AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene074171

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene074171.t1 MTR_6g021950 99.257 404 3 0 1 404 1 404 0.0 832
MS.gene074171.t1 MTR_4g104320 80.890 382 72 1 24 404 26 407 0.0 635
MS.gene074171.t1 MTR_3g075320 75.931 403 97 0 2 404 4 406 0.0 617
MS.gene074171.t1 MTR_3g086310 75.448 391 93 2 14 404 16 403 0.0 587
MS.gene074171.t1 MTR_1g047370 68.146 383 122 0 22 404 68 450 0.0 565
MS.gene074171.t1 MTR_7g059290 66.062 386 131 0 19 404 59 444 0.0 549
MS.gene074171.t1 MTR_3g086320 67.332 401 125 4 6 404 10 406 0.0 533
MS.gene074171.t1 MTR_1g062930 62.760 384 136 1 26 402 34 417 0.0 518
MS.gene074171.t1 MTR_1g111590 65.147 373 127 1 27 396 35 407 0.0 517
MS.gene074171.t1 MTR_7g102940 63.757 378 136 1 26 402 35 412 6.46e-179 506
MS.gene074171.t1 MTR_4g107870 57.487 374 154 3 34 404 63 434 5.49e-160 457
MS.gene074171.t1 MTR_3g075320 75.000 284 71 0 2 285 4 287 2.63e-156 442
MS.gene074171.t1 MTR_5g038510 56.250 368 160 1 38 404 82 449 3.05e-153 441
MS.gene074171.t1 MTR_8g468980 53.616 401 170 4 20 404 55 455 3.97e-151 436
MS.gene074171.t1 MTR_4g132460 60.857 350 133 3 56 404 39 385 5.12e-151 432
MS.gene074171.t1 MTR_5g038490 55.928 388 162 3 26 404 62 449 7.91e-150 432
MS.gene074171.t1 MTR_2g023990 59.143 350 139 3 56 404 63 409 5.47e-146 421
MS.gene074171.t1 MTR_6g011420 53.299 394 171 3 24 404 60 453 6.44e-146 422
MS.gene074171.t1 MTR_7g009390 58.192 354 147 1 52 404 98 451 7.81e-143 414
MS.gene074171.t1 MTR_8g078390 45.480 354 185 6 56 404 42 392 3.02e-98 298
MS.gene074171.t1 MTR_3g030900 45.198 354 186 6 56 404 23 373 7.54e-97 294
MS.gene074171.t1 MTR_8g078310 45.198 354 186 6 56 404 42 392 1.12e-96 294
MS.gene074171.t1 MTR_3g070740 65.854 205 57 2 201 404 134 326 3.07e-91 278
MS.gene074171.t1 MTR_8g078350 45.198 354 186 6 56 404 42 392 5.38e-91 280
MS.gene074171.t1 MTR_4g064420 44.540 348 172 7 56 400 42 371 3.04e-89 276
MS.gene074171.t1 MTR_8g078280 43.503 354 192 6 56 404 42 392 4.96e-89 275
MS.gene074171.t1 MTR_5g019060 42.373 354 196 6 56 404 41 391 9.04e-84 261
MS.gene074171.t1 MTR_5g035840 42.373 354 196 6 56 404 41 391 2.07e-83 260
MS.gene074171.t1 MTR_5g019160 42.090 354 197 6 56 404 41 391 6.42e-83 259
MS.gene074171.t1 MTR_5g019170 42.609 345 190 6 56 395 41 382 1.43e-80 254
MS.gene074171.t1 MTR_5g019090 42.090 354 197 6 56 404 41 391 1.83e-80 253
MS.gene074171.t1 MTR_2g023980 50.584 257 93 6 131 385 1 225 6.74e-73 231
MS.gene074171.t1 MTR_1g069950 43.657 268 147 3 131 396 1 266 2.51e-68 217
MS.gene074171.t1 MTR_6g077900 43.253 289 141 7 89 374 6 274 1.67e-58 192
MS.gene074171.t1 MTR_1g115550 38.699 292 153 7 69 359 9 275 9.94e-50 171
MS.gene074171.t1 MTR_1g067450 36.491 285 157 4 75 359 64 324 7.19e-40 146
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene074171.t1 AT3G27400 72.167 406 107 2 4 404 12 416 0.0 613
MS.gene074171.t1 AT3G27400 72.167 406 107 2 4 404 8 412 0.0 612
MS.gene074171.t1 AT5G63180 72.953 403 106 2 5 404 30 432 0.0 612
MS.gene074171.t1 AT1G67750 74.036 389 99 1 16 404 22 408 0.0 605
MS.gene074171.t1 AT4G24780 73.116 398 105 2 8 404 12 408 0.0 592
MS.gene074171.t1 AT4G24780 73.116 398 105 2 8 404 12 408 0.0 592
MS.gene074171.t1 AT4G13710 66.667 393 127 1 16 404 78 470 0.0 587
MS.gene074171.t1 AT4G13710 66.667 393 127 1 16 404 59 451 0.0 585
MS.gene074171.t1 AT3G07010 68.317 404 121 1 8 404 13 416 0.0 571
MS.gene074171.t1 AT3G07010 71.088 377 109 0 28 404 7 383 0.0 566
MS.gene074171.t1 AT1G04680 67.617 386 121 1 23 404 44 429 0.0 554
MS.gene074171.t1 AT3G24670 68.586 382 120 0 23 404 59 440 0.0 550
MS.gene074171.t1 AT3G24230 65.026 386 130 2 23 404 67 451 0.0 543
MS.gene074171.t1 AT5G48900 68.848 382 119 0 23 404 36 417 0.0 533
MS.gene074171.t1 AT4G13210 68.407 383 120 1 23 404 56 438 0.0 526
MS.gene074171.t1 AT4G13210 68.407 383 120 1 23 404 19 401 0.0 524
MS.gene074171.t1 AT3G53190 61.259 413 143 3 1 396 2 414 1.22e-180 511
MS.gene074171.t1 AT5G04310 62.402 383 131 1 27 396 53 435 6.11e-171 486
MS.gene074171.t1 AT5G04310 62.402 383 131 1 27 396 53 435 7.64e-170 485
MS.gene074171.t1 AT5G04310 62.402 383 131 1 27 396 53 435 7.64e-170 485
MS.gene074171.t1 AT3G54920 59.740 385 131 4 27 396 37 412 4.03e-168 480
MS.gene074171.t1 AT5G55720 56.608 401 159 4 5 404 6 392 3.61e-167 474
MS.gene074171.t1 AT1G14420 54.211 380 166 2 33 404 80 459 4.65e-151 436
MS.gene074171.t1 AT1G11920 58.000 350 144 3 56 404 37 384 4.90e-147 422
MS.gene074171.t1 AT5G15110 55.211 355 157 2 52 404 118 472 3.72e-145 421
MS.gene074171.t1 AT3G01270 56.056 355 154 2 52 404 121 475 4.73e-145 421
MS.gene074171.t1 AT4G22090 57.429 350 145 3 56 404 47 393 7.20e-145 417
MS.gene074171.t1 AT4G22080 56.857 350 147 3 56 404 47 393 3.34e-142 410
MS.gene074171.t1 AT2G02720 53.521 355 159 1 56 404 101 455 6.49e-140 407
MS.gene074171.t1 AT1G30350 52.010 398 158 5 7 404 4 368 3.31e-139 402
MS.gene074171.t1 AT5G09280 47.984 248 127 2 89 335 6 252 2.04e-77 242
MS.gene074171.t1 AT3G55140 39.510 286 147 7 75 359 16 276 5.57e-50 172
MS.gene074171.t1 AT3G09540 36.111 288 158 5 73 359 61 323 2.04e-43 155
MS.gene074171.t1 AT3G55140 39.044 251 132 6 110 359 22 252 9.03e-42 149
MS.gene074171.t1 AT3G09540 35.764 288 155 6 73 359 61 319 2.26e-41 150
MS.gene074171.t1 AT3G09540 35.510 245 134 4 73 317 61 281 6.17e-36 133

Find 82 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTAATTCACAACATATT+TGG 0.148343 6.1:-5559902 MS.gene074171:CDS
TGTCGGTTGTTCTCCCAATT+TGG 0.183698 6.1:+5560329 None:intergenic
GAAGAGGATGAAACAAAATT+TGG 0.190078 6.1:+5561359 None:intergenic
CACCAGAACATAGTGGATTT+TGG 0.212123 6.1:-5559953 MS.gene074171:CDS
ATACATACCTTGGCATTCTT+TGG 0.236926 6.1:+5559685 None:intergenic
ATCTACATTGTCACTGATTC+AGG 0.262745 6.1:-5560245 MS.gene074171:CDS
TCAATTAAAACAAGAACTTT+TGG 0.293810 6.1:-5560126 MS.gene074171:CDS
TCATGACAAAGTTATGCTTT+TGG 0.300199 6.1:-5559784 MS.gene074171:CDS
GCTGATTGTGCAATTGGATT+TGG 0.305034 6.1:-5560299 MS.gene074171:CDS
GTCGGTTGTTCTCCCAATTT+GGG 0.308400 6.1:+5560330 None:intergenic
CAATTCAAGATGAACCATTA+TGG 0.310393 6.1:-5560175 MS.gene074171:CDS
TCCTTGCTAAATCTATTATC+TGG 0.317797 6.1:+5558622 None:intergenic
TACCTTAATGTTCCTGGCTT+AGG 0.318773 6.1:+5560203 None:intergenic
GTTGGAGATGTGACCCAAAT+TGG 0.323275 6.1:-5560343 MS.gene074171:CDS
GGTTCCATCACTACTACTTC+TGG 0.332285 6.1:-5558433 MS.gene074171:CDS
GCACCATACCTTAATGTTCC+TGG 0.337883 6.1:+5560197 None:intergenic
TTCCCTTGGCTGTTGATTGT+AGG 0.338196 6.1:+5558658 None:intergenic
ACCTTAATGTTCCTGGCTTA+GGG 0.354026 6.1:+5560204 None:intergenic
ACATCTTGTACAACAAGTTC+AGG 0.356255 6.1:+5561326 None:intergenic
AGACTAGCTGATTGTGCAAT+TGG 0.358822 6.1:-5560305 MS.gene074171:CDS
ACCCTAAGCCAGGAACATTA+AGG 0.369613 6.1:-5560205 MS.gene074171:CDS
GTGAATATAATAGCTGGAAT+TGG 0.370547 6.1:-5558570 MS.gene074171:CDS
CACAATCAGCTAGTCTTTGT+CGG 0.381751 6.1:+5560312 None:intergenic
GCAAGACCAGCCTCTCTTGT+TGG 0.384223 6.1:-5558454 MS.gene074171:CDS
GAGGGTGATTTGTTCTTGAA+TGG 0.394829 6.1:-5558541 MS.gene074171:CDS
CTCTAGGTCTAGGAGAAACT+TGG 0.396252 6.1:-5560405 MS.gene074171:CDS
AAGAGGATGAAACAAAATTT+GGG 0.396495 6.1:+5561360 None:intergenic
GGCTATTTATCATGTGGAAC+TGG 0.405816 6.1:-5560383 MS.gene074171:CDS
GTTCATGATTGTGTTCCAAC+GGG 0.420422 6.1:-5559996 MS.gene074171:CDS
GGAGCATTCTTTAGACAAAC+TGG 0.421504 6.1:-5558520 MS.gene074171:CDS
TCCCTTGGCTGTTGATTGTA+GGG 0.426471 6.1:+5558659 None:intergenic
AATTCATACAAGACAATTGA+TGG 0.427271 6.1:-5560101 MS.gene074171:CDS
GATCATATTCAAAAGAGATA+TGG 0.439191 6.1:-5560153 MS.gene074171:CDS
GCAATCCAATTGATGATTGT+TGG 0.439325 6.1:-5560361 MS.gene074171:CDS
CATCTCCAACAATCATCAAT+TGG 0.440002 6.1:+5560356 None:intergenic
GAACAATGATTACACACATT+GGG 0.453403 6.1:-5558710 MS.gene074171:CDS
GTTAATAATGTTATAATACA+TGG 0.461906 6.1:-5560026 MS.gene074171:CDS
GGATTTGGAAAAGATGCAAT+TGG 0.464882 6.1:-5560284 MS.gene074171:CDS
CAGAAAGTGAATATAATAGC+TGG 0.465031 6.1:-5558576 MS.gene074171:CDS
GTCCAAAATCCACTATGTTC+TGG 0.466293 6.1:+5559951 None:intergenic
GTGCAAGAAATCTGTTCCCT+TGG 0.476596 6.1:+5558644 None:intergenic
CTAATATTTGTGTTCCCCGT+TGG 0.486392 6.1:+5559981 None:intergenic
GCATCAATGTCTCTAGGTCT+AGG 0.489694 6.1:-5560415 MS.gene074171:CDS
TTGGAGATGTGACCCAAATT+GGG 0.502512 6.1:-5560342 MS.gene074171:CDS
GGTCTTATTGATGTTATACA+TGG 0.506577 6.1:-5559846 MS.gene074171:CDS
GGTGTGCTCACTTGCAAGAA+GGG 0.516097 6.1:-5558412 MS.gene074171:CDS
TGGTGTGCTCACTTGCAAGA+AGG 0.516822 6.1:-5558413 MS.gene074171:CDS
AGCTGGAATTGGAGATCAGA+GGG 0.527960 6.1:-5558559 MS.gene074171:CDS
CATTGGGAAATGTATGCAAT+TGG 0.540092 6.1:-5558694 MS.gene074171:CDS
TCTTTGTCTAATTGTCGAGA+TGG 0.541742 6.1:-5559867 MS.gene074171:CDS
ATGGAACCAACAAGAGAGGC+TGG 0.542918 6.1:+5558448 None:intergenic
TGTTCATGATTGTGTTCCAA+CGG 0.543560 6.1:-5559997 MS.gene074171:CDS
GTAGGAGCATCAATGTCTCT+AGG 0.545125 6.1:-5560421 MS.gene074171:intron
TGAACAATGATTACACACAT+TGG 0.549687 6.1:-5558711 MS.gene074171:CDS
GTGACCTGCATGTCCTTGTC+CGG 0.551806 6.1:+5559741 None:intergenic
TACACCGGACAAGGACATGC+AGG 0.561475 6.1:-5559745 MS.gene074171:CDS
TACAAGACAATTGATGGAAG+AGG 0.566366 6.1:-5560095 MS.gene074171:CDS
AATTCCATCACCATCTGAAA+CGG 0.566606 6.1:+5559929 None:intergenic
ACCAGATAATAGATTTAGCA+AGG 0.568377 6.1:-5558623 MS.gene074171:CDS
AACCCTACAATCAACAGCCA+AGG 0.572050 6.1:-5558661 MS.gene074171:CDS
AACTTGGGCTATTTATCATG+TGG 0.574554 6.1:-5560389 MS.gene074171:CDS
TGGACCGTTTCAGATGGTGA+TGG 0.575388 6.1:-5559933 MS.gene074171:CDS
AAGCCAGGAACATTAAGGTA+TGG 0.578760 6.1:-5560200 MS.gene074171:CDS
TTCAGGGTCTTGAACTGAAG+AGG 0.579107 6.1:+5561343 None:intergenic
GCTAGTGTTCACATTGCAAA+TGG 0.586396 6.1:-5560071 MS.gene074171:CDS
ACATAGTGATTCTTATACAC+CGG 0.587740 6.1:-5559760 MS.gene074171:CDS
TGGGAAATGTATGCAATTGG+TGG 0.593671 6.1:-5558691 MS.gene074171:CDS
CATCTTGTACAACAAGTTCA+GGG 0.601679 6.1:+5561327 None:intergenic
CACACCAGAAGTAGTAGTGA+TGG 0.602959 6.1:+5558429 None:intergenic
GATGCAGTAAACCCTAAGCC+AGG 0.603794 6.1:-5560215 MS.gene074171:CDS
TTTGGAAAAGATGCAATTGG+TGG 0.625951 6.1:-5560281 MS.gene074171:CDS
TGATTCTTATACACCGGACA+AGG 0.630256 6.1:-5559754 MS.gene074171:CDS
ACCCTACAATCAACAGCCAA+GGG 0.631197 6.1:-5558660 MS.gene074171:CDS
TCTAGGTCTAGGAGAAACTT+GGG 0.631443 6.1:-5560404 MS.gene074171:CDS
AGAGACTCACCAGAACATAG+TGG 0.640397 6.1:-5559960 MS.gene074171:CDS
AGTGTTCACATTGCAAATGG+TGG 0.646316 6.1:-5560068 MS.gene074171:CDS
TAGCTGGAATTGGAGATCAG+AGG 0.658304 6.1:-5558560 MS.gene074171:CDS
GGGAAATGTATGCAATTGGT+GGG 0.659423 6.1:-5558690 MS.gene074171:CDS
AGTGATGGAACCAACAAGAG+AGG 0.669990 6.1:+5558444 None:intergenic
TTCATGATTGTGTTCCAACG+GGG 0.684589 6.1:-5559995 MS.gene074171:CDS
TTGTTGTACAAGATGTACAA+AGG 0.691137 6.1:-5561319 MS.gene074171:intron
GGCTTGTCCAAAGAATGCCA+AGG 0.703891 6.1:-5559692 MS.gene074171:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTCTATTATTGAAAATT+TGG - chr6.1:5560715-5560734 MS.gene074171:intron 10.0%
!! TTCATAATATATAATTAACT+TGG + chr6.1:5559273-5559292 None:intergenic 10.0%
!!! ACATTTTTTTTTTATGTTTA+TGG + chr6.1:5560695-5560714 None:intergenic 10.0%
!!! CATTTTTTTTTTATGTTTAT+GGG + chr6.1:5560694-5560713 None:intergenic 10.0%
!! CAATCACAAATAAAATTATT+TGG + chr6.1:5560363-5560382 None:intergenic 15.0%
!! CTGAAAACAATAATTATTTA+TGG + chr6.1:5561046-5561065 None:intergenic 15.0%
!! GTTAATAATGTTATAATACA+TGG - chr6.1:5559777-5559796 MS.gene074171:CDS 15.0%
!!! ACTTTTTTTTCTTTCTAAAT+GGG + chr6.1:5559018-5559037 None:intergenic 15.0%
!!! ATAGAATTTAATTTCTATCA+CGG - chr6.1:5560411-5560430 MS.gene074171:CDS 15.0%
!!! TTCTTGTTTGTTTTTTTAAA+AGG - chr6.1:5559070-5559089 MS.gene074171:intron 15.0%
!! AAATTCAAAAAGTAGGATAA+AGG - chr6.1:5560895-5560914 MS.gene074171:intron 20.0%
!! ATATGGTAAAAAAAAAGTCA+TGG - chr6.1:5560165-5560184 MS.gene074171:CDS 20.0%
!! ATTTACGTATAAATGTTTGA+AGG + chr6.1:5559147-5559166 None:intergenic 20.0%
!! CCTTAAAAAATTCAAAAAGT+AGG - chr6.1:5560888-5560907 MS.gene074171:intron 20.0%
!! TAGAAAGAAAAAAAAGTCTT+TGG - chr6.1:5559021-5559040 MS.gene074171:intron 20.0%
!! TGTTTAATTCACAACATATT+TGG - chr6.1:5559901-5559920 MS.gene074171:CDS 20.0%
!! TTTACGTATAAATGTTTGAA+GGG + chr6.1:5559146-5559165 None:intergenic 20.0%
!!! AACTGATTTTAGTTTATTCT+TGG + chr6.1:5558830-5558849 None:intergenic 20.0%
!!! ACTATTGCTTTTAATCATTT+TGG - chr6.1:5560083-5560102 MS.gene074171:CDS 20.0%
!!! ATTTTAATTTCTCTTCTTGT+AGG - chr6.1:5559364-5559383 MS.gene074171:intron 20.0%
!!! CCTACTTTTTGAATTTTTTA+AGG + chr6.1:5560891-5560910 None:intergenic 20.0%
!!! GACTTTTTTTTCTTTCTAAA+TGG + chr6.1:5559019-5559038 None:intergenic 20.0%
!!! TCAATTAAAACAAGAACTTT+TGG - chr6.1:5559677-5559696 MS.gene074171:intron 20.0%
!!! TCACTATTTTTTTTAGCATA+TGG - chr6.1:5560148-5560167 MS.gene074171:CDS 20.0%
!!! TTGAATTTTTTAAGGTAGTT+AGG + chr6.1:5560883-5560902 None:intergenic 20.0%
! AAGAGGATGAAACAAAATTT+GGG + chr6.1:5558446-5558465 None:intergenic 25.0%
! AATTCATACAAGACAATTGA+TGG - chr6.1:5559702-5559721 MS.gene074171:CDS 25.0%
! ATAAATGTTTGAAGGGAAAA+GGG + chr6.1:5559139-5559158 None:intergenic 25.0%
! GATCATATTCAAAAGAGATA+TGG - chr6.1:5559650-5559669 MS.gene074171:intron 25.0%
! GCTATTATGAGATATTTAGA+AGG + chr6.1:5560751-5560770 None:intergenic 25.0%
! TATAAATGTTTGAAGGGAAA+AGG + chr6.1:5559140-5559159 None:intergenic 25.0%
! TCAAAGAGTTTAATTACTGA+CGG - chr6.1:5559187-5559206 MS.gene074171:intron 25.0%
! TGAGTGTTTGAACAAATAAT+AGG + chr6.1:5560954-5560973 None:intergenic 25.0%
!! AGATTTTCTTAGTGCTTATT+TGG - chr6.1:5560474-5560493 MS.gene074171:intron 25.0%
!! CTTTTGAATATGATCCATAA+TGG + chr6.1:5559645-5559664 None:intergenic 25.0%
!! TCTTAATCATGTTTTGTATG+TGG - chr6.1:5558525-5558544 MS.gene074171:CDS 25.0%
!!! CTTTTAATCATTTTGGTGAA+GGG - chr6.1:5560090-5560109 MS.gene074171:CDS 25.0%
!!! GGTAAGTTCTTGTTTTTAAT+TGG - chr6.1:5559091-5559110 MS.gene074171:intron 25.0%
!!! TGCTCAAACTCTTTTAATTT+GGG + chr6.1:5560242-5560261 None:intergenic 25.0%
ACAATGTGGTGAATTATCAT+CGG + chr6.1:5558987-5559006 None:intergenic 30.0%
ACATAGTGATTCTTATACAC+CGG - chr6.1:5560043-5560062 MS.gene074171:CDS 30.0%
ACCAGATAATAGATTTAGCA+AGG - chr6.1:5561180-5561199 MS.gene074171:intron 30.0%
ATATGTAAGACCAACACTTT+GGG - chr6.1:5560386-5560405 MS.gene074171:CDS 30.0%
ATGCCAAGGTATGTATATAT+AGG - chr6.1:5560125-5560144 MS.gene074171:CDS 30.0%
CAATTCAAGATGAACCATTA+TGG - chr6.1:5559628-5559647 MS.gene074171:intron 30.0%
CAGAAAGTGAATATAATAGC+TGG - chr6.1:5561227-5561246 MS.gene074171:intron 30.0%
CGTTGTTCAACATCATTAAA+CGG + chr6.1:5560293-5560312 None:intergenic 30.0%
GAACAATGATTACACACATT+GGG - chr6.1:5561093-5561112 MS.gene074171:intron 30.0%
GAAGAGGATGAAACAAAATT+TGG + chr6.1:5558447-5558466 None:intergenic 30.0%
GGTAAAAAAAAAGTCATGGA+TGG - chr6.1:5560169-5560188 MS.gene074171:CDS 30.0%
GTCATGATACTACTAAGAAA+GGG + chr6.1:5560794-5560813 None:intergenic 30.0%
GTGAATATAATAGCTGGAAT+TGG - chr6.1:5561233-5561252 MS.gene074171:intron 30.0%
GTTGTTCAACATCATTAAAC+GGG + chr6.1:5560292-5560311 None:intergenic 30.0%
TACTTGTGGTGAATTATCAT+CGG + chr6.1:5558944-5558963 None:intergenic 30.0%
TATATGTAAGACCAACACTT+TGG - chr6.1:5560385-5560404 MS.gene074171:CDS 30.0%
TCCTTGCTAAATCTATTATC+TGG + chr6.1:5561184-5561203 None:intergenic 30.0%
TGAACAATGATTACACACAT+TGG - chr6.1:5561092-5561111 MS.gene074171:intron 30.0%
TGACCTATATATACATACCT+TGG + chr6.1:5560131-5560150 None:intergenic 30.0%
TTGGAGTTTATGTGTTAAAG+TGG + chr6.1:5560545-5560564 None:intergenic 30.0%
TTGTTGTACAAGATGTACAA+AGG - chr6.1:5558484-5558503 MS.gene074171:CDS 30.0%
TTTCTTAGTGCTTATTTGGA+TGG - chr6.1:5560478-5560497 MS.gene074171:intron 30.0%
! AATGGGTTTATATGACAATG+TGG + chr6.1:5559001-5559020 None:intergenic 30.0%
! ATTGTTTTCAGATGTAGACA+TGG - chr6.1:5561055-5561074 MS.gene074171:intron 30.0%
! CATGACAAAGTTATGCTTTT+GGG - chr6.1:5560020-5560039 MS.gene074171:CDS 30.0%
! GCTTTTATGAAGTTGAGAAT+TGG + chr6.1:5560564-5560583 None:intergenic 30.0%
! GTGTAAAATAGTCTTACTTG+TGG + chr6.1:5558958-5558977 None:intergenic 30.0%
! GTTTAATAGAAGTGCATTGT+CGG - chr6.1:5558894-5558913 MS.gene074171:intron 30.0%
! TCATGACAAAGTTATGCTTT+TGG - chr6.1:5560019-5560038 MS.gene074171:CDS 30.0%
!! CGGGTTCTCTTTTTAAAAAA+AGG + chr6.1:5560273-5560292 None:intergenic 30.0%
!! GCTTTTAATCATTTTGGTGA+AGG - chr6.1:5560089-5560108 MS.gene074171:CDS 30.0%
!! GGTCTTATTGATGTTATACA+TGG - chr6.1:5559957-5559976 MS.gene074171:CDS 30.0%
!! GTGCTCAAACTCTTTTAATT+TGG + chr6.1:5560243-5560262 None:intergenic 30.0%
!! TAGACATGGTTATTTTCATG+TGG - chr6.1:5561069-5561088 MS.gene074171:intron 30.0%
!!! TTAAGTCTCTACCTTGTTTT+TGG + chr6.1:5560828-5560847 None:intergenic 30.0%
AACTTGGGCTATTTATCATG+TGG - chr6.1:5559414-5559433 MS.gene074171:intron 35.0%
AAGAAAATCTCATTGCAGGT+GGG + chr6.1:5560464-5560483 None:intergenic 35.0%
AATTCCATCACCATCTGAAA+CGG + chr6.1:5559877-5559896 None:intergenic 35.0%
AATTCTATCTCCCAAAGTGT+TGG + chr6.1:5560399-5560418 None:intergenic 35.0%
ACATCTTGTACAACAAGTTC+AGG + chr6.1:5558480-5558499 None:intergenic 35.0%
ATACATACCTTGGCATTCTT+TGG + chr6.1:5560121-5560140 None:intergenic 35.0%
CACTAAGAAAATCTCATTGC+AGG + chr6.1:5560468-5560487 None:intergenic 35.0%
CATCTCCAACAATCATCAAT+TGG + chr6.1:5559450-5559469 None:intergenic 35.0%
CATCTTGTACAACAAGTTCA+GGG + chr6.1:5558479-5558498 None:intergenic 35.0%
CATTGGGAAATGTATGCAAT+TGG - chr6.1:5561109-5561128 MS.gene074171:intron 35.0%
CGTCATGATACTACTAAGAA+AGG + chr6.1:5560795-5560814 None:intergenic 35.0%
GGATTTGGAAAAGATGCAAT+TGG - chr6.1:5559519-5559538 MS.gene074171:intron 35.0%
GGTTAGCAAAAATGTGTCTT+TGG - chr6.1:5560190-5560209 MS.gene074171:CDS 35.0%
TAAGAAAATCTCATTGCAGG+TGG + chr6.1:5560465-5560484 None:intergenic 35.0%
TACAAGACAATTGATGGAAG+AGG - chr6.1:5559708-5559727 MS.gene074171:CDS 35.0%
TAGCAAAAATGTGTCTTTGG+AGG - chr6.1:5560193-5560212 MS.gene074171:CDS 35.0%
TCTTTGTCTAATTGTCGAGA+TGG - chr6.1:5559936-5559955 MS.gene074171:CDS 35.0%
TGATACTACTAAGAAAGGGT+TGG + chr6.1:5560790-5560809 None:intergenic 35.0%
TGTTCATGATTGTGTTCCAA+CGG - chr6.1:5559806-5559825 MS.gene074171:CDS 35.0%
TTAGTGCTTATTTGGATGGA+CGG - chr6.1:5560482-5560501 MS.gene074171:intron 35.0%
TTTGGAAAAGATGCAATTGG+TGG - chr6.1:5559522-5559541 MS.gene074171:intron 35.0%
! GATGCAATTGGTGGTAAAAA+TGG - chr6.1:5559531-5559550 MS.gene074171:intron 35.0%
! GCAATCCAATTGATGATTGT+TGG - chr6.1:5559442-5559461 MS.gene074171:intron 35.0%
! TCACGTTTTGCTTGAAATCA+CGG - chr6.1:5560512-5560531 MS.gene074171:intron 35.0%
! TGTCACTAGATGCATGTTTT+TGG + chr6.1:5558642-5558661 None:intergenic 35.0%
!! ATCTACATTGTCACTGATTC+AGG - chr6.1:5559558-5559577 MS.gene074171:intron 35.0%
!!! CTACCTTGTTTTTGGTTCAA+TGG + chr6.1:5560820-5560839 None:intergenic 35.0%
AAGCCAGGAACATTAAGGTA+TGG - chr6.1:5559603-5559622 MS.gene074171:intron 40.0%
ACCTTAATGTTCCTGGCTTA+GGG + chr6.1:5559602-5559621 None:intergenic 40.0%
AGTGTTCACATTGCAAATGG+TGG - chr6.1:5559735-5559754 MS.gene074171:CDS 40.0%
CTAATATTTGTGTTCCCCGT+TGG + chr6.1:5559825-5559844 None:intergenic 40.0%
GCTAGTGTTCACATTGCAAA+TGG - chr6.1:5559732-5559751 MS.gene074171:CDS 40.0%
GCTCCATTGAACCAAAAACA+AGG - chr6.1:5560814-5560833 MS.gene074171:intron 40.0%
GCTGATTGTGCAATTGGATT+TGG - chr6.1:5559504-5559523 MS.gene074171:intron 40.0%
GGCTATTTATCATGTGGAAC+TGG - chr6.1:5559420-5559439 MS.gene074171:intron 40.0%
GGGAAATGTATGCAATTGGT+GGG - chr6.1:5561113-5561132 MS.gene074171:intron 40.0%
GTCCAAAATCCACTATGTTC+TGG + chr6.1:5559855-5559874 None:intergenic 40.0%
GTTCATGATTGTGTTCCAAC+GGG - chr6.1:5559807-5559826 MS.gene074171:CDS 40.0%
TACCTTAATGTTCCTGGCTT+AGG + chr6.1:5559603-5559622 None:intergenic 40.0%
TCTAGGTCTAGGAGAAACTT+GGG - chr6.1:5559399-5559418 MS.gene074171:intron 40.0%
TGATTCTTATACACCGGACA+AGG - chr6.1:5560049-5560068 MS.gene074171:CDS 40.0%
TGGGAAATGTATGCAATTGG+TGG - chr6.1:5561112-5561131 MS.gene074171:intron 40.0%
TTCATGATTGTGTTCCAACG+GGG - chr6.1:5559808-5559827 MS.gene074171:CDS 40.0%
TTGGAGATGTGACCCAAATT+GGG - chr6.1:5559461-5559480 MS.gene074171:intron 40.0%
! AGACTAGCTGATTGTGCAAT+TGG - chr6.1:5559498-5559517 MS.gene074171:intron 40.0%
! GGAGCATTCTTTAGACAAAC+TGG - chr6.1:5561283-5561302 MS.gene074171:intron 40.0%
!! CACAATCAGCTAGTCTTTGT+CGG + chr6.1:5559494-5559513 None:intergenic 40.0%
!! GAGGGTGATTTGTTCTTGAA+TGG - chr6.1:5561262-5561281 MS.gene074171:intron 40.0%
!!! CACCAGAACATAGTGGATTT+TGG - chr6.1:5559850-5559869 MS.gene074171:CDS 40.0%
AACCCTACAATCAACAGCCA+AGG - chr6.1:5561142-5561161 MS.gene074171:intron 45.0%
ACCCTAAGCCAGGAACATTA+AGG - chr6.1:5559598-5559617 MS.gene074171:intron 45.0%
ACCCTACAATCAACAGCCAA+GGG - chr6.1:5561143-5561162 MS.gene074171:intron 45.0%
AGAGACTCACCAGAACATAG+TGG - chr6.1:5559843-5559862 MS.gene074171:CDS 45.0%
AGCTGGAATTGGAGATCAGA+GGG - chr6.1:5561244-5561263 MS.gene074171:intron 45.0%
ATGTAGATATCCCCGCAAGT+GGG - chr6.1:5560666-5560685 MS.gene074171:intron 45.0%
CACACCAGAAGTAGTAGTGA+TGG + chr6.1:5561377-5561396 None:intergenic 45.0%
CATTGCAGGTGGGAATAAGT+GGG + chr6.1:5560454-5560473 None:intergenic 45.0%
CGGGGATATCTACATAGATG+GGG + chr6.1:5560661-5560680 None:intergenic 45.0%
CTCTAGGTCTAGGAGAAACT+TGG - chr6.1:5559398-5559417 MS.gene074171:intron 45.0%
GACATAGTGCGTGTTTGGAA+TGG + chr6.1:5560639-5560658 None:intergenic 45.0%
GCACCATACCTTAATGTTCC+TGG + chr6.1:5559609-5559628 None:intergenic 45.0%
GCATCAATGTCTCTAGGTCT+AGG - chr6.1:5559388-5559407 MS.gene074171:intron 45.0%
GCGGGGATATCTACATAGAT+GGG + chr6.1:5560662-5560681 None:intergenic 45.0%
GGTTCCATCACTACTACTTC+TGG - chr6.1:5561370-5561389 MS.gene074171:CDS 45.0%
GTCGGTTGTTCTCCCAATTT+GGG + chr6.1:5559476-5559495 None:intergenic 45.0%
GTGCAAGAAATCTGTTCCCT+TGG + chr6.1:5561162-5561181 None:intergenic 45.0%
GTTGGAGATGTGACCCAAAT+TGG - chr6.1:5559460-5559479 MS.gene074171:intron 45.0%
TAGCTGGAATTGGAGATCAG+AGG - chr6.1:5561243-5561262 MS.gene074171:intron 45.0%
TATGTAGATATCCCCGCAAG+TGG - chr6.1:5560665-5560684 MS.gene074171:intron 45.0%
TCATTGCAGGTGGGAATAAG+TGG + chr6.1:5560455-5560474 None:intergenic 45.0%
TGCGGGGATATCTACATAGA+TGG + chr6.1:5560663-5560682 None:intergenic 45.0%
TGTTTATGGGTTCCCACTTG+CGG + chr6.1:5560681-5560700 None:intergenic 45.0%
TTCAGGGTCTTGAACTGAAG+AGG + chr6.1:5558463-5558482 None:intergenic 45.0%
! AGTGATGGAACCAACAAGAG+AGG + chr6.1:5561362-5561381 None:intergenic 45.0%
! GGATTTTGGACCGTTTCAGA+TGG - chr6.1:5559864-5559883 MS.gene074171:CDS 45.0%
! TCCCTTGGCTGTTGATTGTA+GGG + chr6.1:5561147-5561166 None:intergenic 45.0%
! TGTCGGTTGTTCTCCCAATT+TGG + chr6.1:5559477-5559496 None:intergenic 45.0%
! TTCCCTTGGCTGTTGATTGT+AGG + chr6.1:5561148-5561167 None:intergenic 45.0%
!! GTAGGAGCATCAATGTCTCT+AGG - chr6.1:5559382-5559401 MS.gene074171:intron 45.0%
!!! ATTTTTTTTTTTTTTTTGAA+AGG - chr6.1:5560983-5561002 MS.gene074171:intron 5.0%
ATGGAACCAACAAGAGAGGC+TGG + chr6.1:5561358-5561377 None:intergenic 50.0%
ATGGGGACATAGTGCGTGTT+TGG + chr6.1:5560644-5560663 None:intergenic 50.0%
GATGCAGTAAACCCTAAGCC+AGG - chr6.1:5559588-5559607 MS.gene074171:intron 50.0%
GGCTTGTCCAAAGAATGCCA+AGG - chr6.1:5560111-5560130 MS.gene074171:CDS 50.0%
GGTGTGCTCACTTGCAAGAA+GGG - chr6.1:5561391-5561410 MS.gene074171:CDS 50.0%
GTTTATGGGTTCCCACTTGC+GGG + chr6.1:5560680-5560699 None:intergenic 50.0%
TGGACCGTTTCAGATGGTGA+TGG - chr6.1:5559870-5559889 MS.gene074171:CDS 50.0%
TGGTGTGCTCACTTGCAAGA+AGG - chr6.1:5561390-5561409 MS.gene074171:CDS 50.0%
TTTATGGGTTCCCACTTGCG+GGG + chr6.1:5560679-5560698 None:intergenic 50.0%
GCAAGACCAGCCTCTCTTGT+TGG - chr6.1:5561349-5561368 MS.gene074171:CDS 55.0%
GTGACCTGCATGTCCTTGTC+CGG + chr6.1:5560065-5560084 None:intergenic 55.0%
TACACCGGACAAGGACATGC+AGG - chr6.1:5560058-5560077 MS.gene074171:CDS 55.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 5558399 5561426 5558399 ID=MS.gene074171
chr6.1 mRNA 5558399 5561426 5558399 ID=MS.gene074171.t1;Parent=MS.gene074171
chr6.1 exon 5561320 5561426 5561320 ID=MS.gene074171.t1.exon1;Parent=MS.gene074171.t1
chr6.1 CDS 5561320 5561426 5561320 ID=cds.MS.gene074171.t1;Parent=MS.gene074171.t1
chr6.1 exon 5559693 5560439 5559693 ID=MS.gene074171.t1.exon2;Parent=MS.gene074171.t1
chr6.1 CDS 5559693 5560439 5559693 ID=cds.MS.gene074171.t1;Parent=MS.gene074171.t1
chr6.1 exon 5558399 5558759 5558399 ID=MS.gene074171.t1.exon3;Parent=MS.gene074171.t1
chr6.1 CDS 5558399 5558759 5558399 ID=cds.MS.gene074171.t1;Parent=MS.gene074171.t1
Gene Sequence

>MS.gene074171

ATGACTTCTCATTCATACTTTCTCATTCTTTTTGCTCTTCTAATCCCAAATTTTGTTTCATCCTCTTCAGTTCAAGACCCTGAACTTGTTGTACAAGATGTACAAAGGTAATAACATTTCTTTATTTCTTAATCATGTTTTGTATGTGGACTCACTATAGCTACATTATTCATTTCATACGTATTTCGATCAACAATTTCATTAAGTTTATTGCATAAAAGTTTGATTCATATGTAATGTCCAAAAACATGCATCTAGTGACATATGATAAAATAAATATTTTGTGCATCTAACATAACAAAGTGATATCATAGAGTAGTTTGTTTGAGTGCATGTATAATTTTTTTACACTATCAATGCATAATCTCAAAGCTCATATGTGTGTTATTTCTACATTTGATTATAAAATCAAAATATCTCAATATCAGCCAAGAATAAACTAAAATCAGTTTATGAAAAATGTTGAGTTATTTTTATAAACTCTTCTAAATACGAGTTTAATAGAAGTGCATTGTCGGAGTAAGACTATTTTACACTAACATCCGATGATAATTCACCACAAGTAAGACTATTTTACACTAACATCCGATGATAATTCACCACATTGTCATATAAACCCATTTAGAAAGAAAAAAAAGTCTTTGGCTTGTTAATTGTTAAAAAAAGTCAAGTTCTTGTTTGTTTTTTTAAAAGGTAAGTTCTTGTTTTTAATTGGTTGTTAGTGTAAAACTAGTTATCCCTTTTCCCTTCAAACATTTATACGTAAATACTTATGTCATATAATAACTTCAAAGAGTTTAATTACTGACGGTGTAAAGTTATTTTACATATCAATGTCGTGTTACATTAATTAATGACGTCAACTTTAACGCCAAGTTAATTATATATTATGAAGTATAAATATTATGAAAACAAACTAAATTTTATTATAATAATTGTCTTATTTGAATTAATTAGTTAAATTAATTTTAATTTCTCTTCTTGTAGGAGCATCAATGTCTCTAGGTCTAGGAGAAACTTGGGCTATTTATCATGTGGAACTGGCAATCCAATTGATGATTGTTGGAGATGTGACCCAAATTGGGAGAACAACCGACAAAGACTAGCTGATTGTGCAATTGGATTTGGAAAAGATGCAATTGGTGGTAAAAATGGTAAAATCTACATTGTCACTGATTCAGGTGATGATGATGCAGTAAACCCTAAGCCAGGAACATTAAGGTATGGTGCAATTCAAGATGAACCATTATGGATCATATTCAAAAGAGATATGGTAATTCAATTAAAACAAGAACTTTTGGTAAATTCATACAAGACAATTGATGGAAGAGGTGCTAGTGTTCACATTGCAAATGGTGGATGTATTACAATACATTATGTTAATAATGTTATAATACATGGTATTCATGTTCATGATTGTGTTCCAACGGGGAACACAAATATTAGAGACTCACCAGAACATAGTGGATTTTGGACCGTTTCAGATGGTGATGGAATTTCAGTGTTTAATTCACAACATATTTGGATTGATCATTGTTCTTTGTCTAATTGTCGAGATGGTCTTATTGATGTTATACATGGATCTAATGCTATTACTATTTCAAATAACTATATGACTCATCATGACAAAGTTATGCTTTTGGGACATAGTGATTCTTATACACCGGACAAGGACATGCAGGTCACTATTGCTTTTAATCATTTTGGTGAAGGGCTTGTCCAAAGAATGCCAAGGTATGTATATATAGGTCACTATTTTTTTTAGCATATGGTAAAAAAAAAGTCATGGATGGTTAGCAAAAATGTGTCTTTGGAGGAGAAATACATGCTTAGCTACAAACCCAAATTAAAAGAGTTTGAGCACGTTTACACCTTTTTTTAAAAAGAGAACCCGTTTAATGATGTTGAACAACGTGACTAATTTATTTATCTTTTAATTTCTTTCATTATTATGTGTACGTCCAAATAATTTTATTTGTGATTGCGTATATGTAAGACCAACACTTTGGGAGATAGAATTTAATTTCTATCACGGCGTCTTAAAATGTTCGTCCCACTTATTCCCACCTGCAATGAGATTTTCTTAGTGCTTATTTGGATGGACGGTTGTAAATCACGTTTTGCTTGAAATCACGGCAAAAAACCACTTTAACACATAAACTCCAATTCTCAACTTCATAAAAGCACGATATGTTTACATTGAATAGTGTGCAAATGTACTTTTGTTTCATCAAACGCCATTCCAAACACGCACTATGTCCCCATCTATGTAGATATCCCCGCAAGTGGGAACCCATAAACATAAAAAAAAAATGTAAATTCTATTATTGAAAATTTGGTCATTTCTAACCTTCTAAATATCTCATAATAGCAAATGTCATATTAATACCAACCCTTTCTTAGTAGTATCATGACGCTCCATTGAACCAAAAACAAGGTAGAGACTTAACAAATTCAAAGAAATGTGCATATATACTCATACCTAACTACCTTAAAAAATTCAAAAAGTAGGATAAAGGTTAATTGTGACTTTTTGATTGAGTTATCTATTGCCTATTATTTGTTCAAACACTCACATGAATACATTTTTTTTTTTTTTTTGAAAGGAACTCACATGAATACATATAAGCATGAAAATATATAACCATAAATAATTATTGTTTTCAGATGTAGACATGGTTATTTTCATGTGGTGAACAATGATTACACACATTGGGAAATGTATGCAATTGGTGGGAGTGCTAACCCTACAATCAACAGCCAAGGGAACAGATTTCTTGCACCAGATAATAGATTTAGCAAGGAAGTAACAAAGCATGAAGATGCATCAGAAAGTGAATATAATAGCTGGAATTGGAGATCAGAGGGTGATTTGTTCTTGAATGGAGCATTCTTTAGACAAACTGGTGCTGAATCTTCTTCAATCTATGCTAGAGCTTCAAGTCTTAGTGCAAGACCAGCCTCTCTTGTTGGTTCCATCACTACTACTTCTGGTGTGCTCACTTGCAAGAAGGGCAACCGTTGCTAA
Protein sequence

>MS.gene074171.t1

MTSHSYFLILFALLIPNFVSSSSVQDPELVVQDVQRSINVSRSRRNLGYLSCGTGNPIDDCWRCDPNWENNRQRLADCAIGFGKDAIGGKNGKIYIVTDSGDDDAVNPKPGTLRYGAIQDEPLWIIFKRDMVIQLKQELLVNSYKTIDGRGASVHIANGGCITIHYVNNVIIHGIHVHDCVPTGNTNIRDSPEHSGFWTVSDGDGISVFNSQHIWIDHCSLSNCRDGLIDVIHGSNAITISNNYMTHHDKVMLLGHSDSYTPDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDNRFSKEVTKHEDASESEYNSWNWRSEGDLFLNGAFFRQTGAESSSIYARASSLSARPASLVGSITTTSGVLTCKKGNRC