Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074414.t1 | XP_013461079.1 | 96.9 | 262 | 8 | 0 | 1 | 262 | 1 | 262 | 1.70E-152 | 548.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074414.t1 | Q9FMX0 | 66.9 | 266 | 81 | 3 | 1 | 262 | 1 | 263 | 1.3e-105 | 384.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074414.t1 | A0A072V160 | 96.9 | 262 | 8 | 0 | 1 | 262 | 1 | 262 | 1.2e-152 | 548.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050301 | MS.gene074414 | 0.807281 | 5.46E-50 | -1.69E-46 |
| MS.gene051663 | MS.gene074414 | 0.809398 | 1.93E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene074414 | 0.80508 | 1.59E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene074414 | 0.808275 | 3.36E-50 | -1.69E-46 |
| MS.gene05811 | MS.gene074414 | 0.805868 | 1.08E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074414.t1 | MTR_3g078860 | 96.947 | 262 | 8 | 0 | 1 | 262 | 1 | 262 | 0.0 | 533 |
| MS.gene074414.t1 | MTR_1g048990 | 48.673 | 226 | 99 | 3 | 43 | 252 | 51 | 275 | 1.13e-66 | 209 |
| MS.gene074414.t1 | MTR_1g048990 | 47.594 | 187 | 81 | 3 | 43 | 213 | 51 | 236 | 8.25e-50 | 164 |
| MS.gene074414.t1 | MTR_3g094250 | 32.328 | 232 | 140 | 8 | 20 | 243 | 7 | 229 | 6.72e-30 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074414.t1 | AT5G23310 | 66.541 | 266 | 82 | 2 | 1 | 262 | 1 | 263 | 7.57e-131 | 371 |
| MS.gene074414.t1 | AT5G51100 | 50.435 | 230 | 95 | 4 | 33 | 245 | 36 | 263 | 3.34e-76 | 234 |
| MS.gene074414.t1 | AT5G51100 | 48.696 | 230 | 90 | 5 | 33 | 245 | 36 | 254 | 1.51e-69 | 216 |
| MS.gene074414.t1 | AT4G25100 | 50.235 | 213 | 101 | 3 | 39 | 250 | 1 | 209 | 1.85e-67 | 208 |
| MS.gene074414.t1 | AT4G25100 | 50.235 | 213 | 101 | 3 | 39 | 250 | 1 | 209 | 1.85e-67 | 208 |
| MS.gene074414.t1 | AT4G25100 | 50.235 | 213 | 101 | 3 | 39 | 250 | 1 | 209 | 1.85e-67 | 208 |
| MS.gene074414.t1 | AT4G25100 | 50.235 | 213 | 101 | 3 | 39 | 250 | 1 | 209 | 1.85e-67 | 208 |
| MS.gene074414.t1 | AT5G51100 | 50.761 | 197 | 79 | 3 | 65 | 245 | 1 | 195 | 1.56e-66 | 207 |
| MS.gene074414.t1 | AT5G51100 | 50.761 | 197 | 79 | 3 | 65 | 245 | 1 | 195 | 1.56e-66 | 207 |
| MS.gene074414.t1 | AT5G51100 | 50.538 | 186 | 73 | 4 | 33 | 201 | 36 | 219 | 6.79e-57 | 182 |
| MS.gene074414.t1 | AT5G51100 | 50.538 | 186 | 73 | 4 | 33 | 201 | 36 | 219 | 6.79e-57 | 182 |
| MS.gene074414.t1 | AT4G25100 | 49.198 | 187 | 90 | 3 | 65 | 250 | 1 | 183 | 7.15e-57 | 180 |
| MS.gene074414.t1 | AT3G10920 | 33.482 | 224 | 129 | 8 | 32 | 243 | 9 | 224 | 2.48e-31 | 116 |
| MS.gene074414.t1 | AT3G10920 | 33.036 | 224 | 129 | 9 | 32 | 243 | 9 | 223 | 5.33e-29 | 110 |
| MS.gene074414.t1 | AT3G56350 | 35.484 | 186 | 96 | 5 | 55 | 228 | 42 | 215 | 8.96e-28 | 107 |
Find 68 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACAGATTGAAAAGGATTT+TGG | 0.090800 | 3.4:-75364585 | MS.gene074414:CDS |
| GGGAAGGATGATATACTTTA+TGG | 0.140754 | 3.4:-75365405 | MS.gene074414:CDS |
| CACAAATCCAAATTGATTAT+TGG | 0.163080 | 3.4:+75363895 | None:intergenic |
| CGTGCAGCCAATAATCAATT+TGG | 0.180074 | 3.4:-75363902 | MS.gene074414:intron |
| TTTGGAATCATGACTTCTTC+TGG | 0.232976 | 3.4:-75364656 | MS.gene074414:CDS |
| GCACTTGCATTGTTTGGTTC+TGG | 0.259459 | 3.4:-75364525 | MS.gene074414:CDS |
| TGGAATAGGGTTTAAGTAAC+AGG | 0.279125 | 3.4:+75366627 | None:intergenic |
| TTGCATTGTTTGGTTCTGGC+TGG | 0.291240 | 3.4:-75364521 | MS.gene074414:CDS |
| GAAGCTGCACTTGCATTGTT+TGG | 0.347281 | 3.4:-75364531 | MS.gene074414:CDS |
| GGAGGTGATATGCCCATTCT+AGG | 0.347578 | 3.4:-75364615 | MS.gene074414:CDS |
| ACTATATCACCCCACACAAT+TGG | 0.353385 | 3.4:+75363995 | None:intergenic |
| TGTTTGGTTCTGGCTGGGTT+TGG | 0.363228 | 3.4:-75364515 | MS.gene074414:CDS |
| AGACGAGAGCTAGTTGGAAT+AGG | 0.389477 | 3.4:+75366613 | None:intergenic |
| TTGGAATCATGACTTCTTCT+GGG | 0.399356 | 3.4:-75364655 | MS.gene074414:CDS |
| AATGCAGCATGCATACTATC+TGG | 0.401361 | 3.4:-75363758 | MS.gene074414:intron |
| AATAATCAATTTGGATTTGT+GGG | 0.402335 | 3.4:-75363893 | MS.gene074414:CDS |
| GACGAGAGCTAGTTGGAATA+GGG | 0.406364 | 3.4:+75366614 | None:intergenic |
| ACCCCACACAATTGGGCAAA+TGG | 0.409488 | 3.4:+75364003 | None:intergenic |
| TTCTGAACCACCTTGTGTCT+TGG | 0.411846 | 3.4:-75363618 | MS.gene074414:CDS |
| CTTCTGGGAATCCATGCAAC+CGG | 0.415502 | 3.4:-75364640 | MS.gene074414:CDS |
| ATTGTCTGCTTGCTCAAATA+TGG | 0.433157 | 3.4:+75365486 | None:intergenic |
| TGCATTGTTTGGTTCTGGCT+GGG | 0.440277 | 3.4:-75364520 | MS.gene074414:CDS |
| TTTACCCTGTGAAGAAGCTT+AGG | 0.443807 | 3.4:+75366556 | None:intergenic |
| CAATAATCAATTTGGATTTG+TGG | 0.448288 | 3.4:-75363894 | MS.gene074414:CDS |
| CTATATCACCCCACACAATT+GGG | 0.451922 | 3.4:+75363996 | None:intergenic |
| AGCAGACAATCGACATGCAC+TGG | 0.468183 | 3.4:-75365473 | MS.gene074414:CDS |
| AAGGTTTGAACGAACAGCTT+GGG | 0.470005 | 3.4:-75365425 | MS.gene074414:CDS |
| CATCATCGGAACTTTGTTGA+AGG | 0.473142 | 3.4:-75365444 | MS.gene074414:CDS |
| AGATTCCTAAGCTTCTTCAC+AGG | 0.484788 | 3.4:-75366561 | MS.gene074414:CDS |
| ATCACCTCCTCCCGGTTGCA+TGG | 0.486059 | 3.4:+75364629 | None:intergenic |
| CTGTTGAAGGAGACCTAGAA+TGG | 0.488189 | 3.4:+75364602 | None:intergenic |
| TCTCCTTCAACAGATTGAAA+AGG | 0.504146 | 3.4:-75364592 | MS.gene074414:CDS |
| CTGCAACGGAACGCTTGACA+TGG | 0.509366 | 3.4:-75363591 | MS.gene074414:CDS |
| CACTTACATGTTCGTAGGGA+GGG | 0.519044 | 3.4:+75365915 | None:intergenic |
| GAAGGTTTGAACGAACAGCT+TGG | 0.524067 | 3.4:-75365426 | MS.gene074414:CDS |
| TGGTACACTTACATGTTCGT+AGG | 0.546092 | 3.4:+75365910 | None:intergenic |
| TATACTTTATGGTTACACCT+TGG | 0.547554 | 3.4:-75365394 | MS.gene074414:CDS |
| TGCCATTTGCCCAATTGTGT+GGG | 0.548387 | 3.4:-75364005 | MS.gene074414:CDS |
| TGCACTGGGGAGAGCATCAT+CGG | 0.548417 | 3.4:-75365458 | MS.gene074414:CDS |
| CACTTTGACTAGTTCATCCA+AGG | 0.548426 | 3.4:+75365377 | None:intergenic |
| TTCTGGGAATCCATGCAACC+GGG | 0.558653 | 3.4:-75364639 | MS.gene074414:CDS |
| GAATCCATGCAACCGGGAGG+AGG | 0.560022 | 3.4:-75364633 | MS.gene074414:CDS |
| GCAGACAATCGACATGCACT+GGG | 0.561935 | 3.4:-75365472 | MS.gene074414:CDS |
| ATGCCATTTGCCCAATTGTG+TGG | 0.565068 | 3.4:-75364006 | MS.gene074414:CDS |
| TGCATACTATCTGGATTACA+AGG | 0.567151 | 3.4:-75363749 | MS.gene074414:intron |
| ACTTACATGTTCGTAGGGAG+GGG | 0.579268 | 3.4:+75365916 | None:intergenic |
| TGTGTCTTGGAATGCTGCAA+CGG | 0.582003 | 3.4:-75363605 | MS.gene074414:CDS |
| GGAACGCTTGACATGGGGAG+AGG | 0.586433 | 3.4:-75363584 | MS.gene074414:CDS |
| GATTCCTAAGCTTCTTCACA+GGG | 0.589975 | 3.4:-75366560 | MS.gene074414:intron |
| TGCAACGGAACGCTTGACAT+GGG | 0.591829 | 3.4:-75363590 | MS.gene074414:CDS |
| GGTACACTTACATGTTCGTA+GGG | 0.593745 | 3.4:+75365911 | None:intergenic |
| GAAATGAGACGAGAGCTAGT+TGG | 0.595195 | 3.4:+75366607 | None:intergenic |
| GCATTGTTGAACTCAGGTGA+GGG | 0.599120 | 3.4:+75365336 | None:intergenic |
| TGTTGAAGGAGACCTAGAAT+GGG | 0.600044 | 3.4:+75364603 | None:intergenic |
| TGCATTGTTGAACTCAGGTG+AGG | 0.604713 | 3.4:+75365335 | None:intergenic |
| TCAGCTGCATTGTTGAACTC+AGG | 0.612280 | 3.4:+75365330 | None:intergenic |
| TGAGTTCAACAATGCAGCTG+AGG | 0.616915 | 3.4:-75365328 | MS.gene074414:intron |
| AATCAATTTGGATTTGTGGG+AGG | 0.617816 | 3.4:-75363890 | MS.gene074414:intron |
| TTTGAACGAACAGCTTGGGA+AGG | 0.619243 | 3.4:-75365421 | MS.gene074414:CDS |
| ATGGGCATATCACCTCCTCC+CGG | 0.633695 | 3.4:+75364621 | None:intergenic |
| GCAACGGAACGCTTGACATG+GGG | 0.640768 | 3.4:-75363589 | MS.gene074414:CDS |
| CAGCATTCCAAGACACAAGG+TGG | 0.656423 | 3.4:+75363611 | None:intergenic |
| ACACTTACATGTTCGTAGGG+AGG | 0.658707 | 3.4:+75365914 | None:intergenic |
| GTCAAAGTGACATACAACAA+TGG | 0.665004 | 3.4:-75365363 | MS.gene074414:CDS |
| TTGCAGCATTCCAAGACACA+AGG | 0.678422 | 3.4:+75363608 | None:intergenic |
| GCCATTTGCCCAATTGTGTG+GGG | 0.687217 | 3.4:-75364004 | MS.gene074414:CDS |
| TGGGAATCCATGCAACCGGG+AGG | 0.708383 | 3.4:-75364636 | MS.gene074414:CDS |
| CAGACAATCGACATGCACTG+GGG | 0.790084 | 3.4:-75365471 | MS.gene074414:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATAGTAAAAGTTAAA+TGG | + | chr3.4:75363683-75363702 | None:intergenic | 10.0% |
| !! | GTATATTACATAATAAAATT+AGG | - | chr3.4:75364972-75364991 | MS.gene074414:intron | 10.0% |
| !! | AATGTTTGACTATTAAAATT+TGG | - | chr3.4:75363849-75363868 | MS.gene074414:intron | 15.0% |
| !! | ATATATTACAACTGAAAATT+GGG | + | chr3.4:75363713-75363732 | None:intergenic | 15.0% |
| !! | TTCTTTCTTTATCATTATAT+TGG | + | chr3.4:75364460-75364479 | None:intergenic | 15.0% |
| !!! | ATCATTATATTGGTTAAAAT+CGG | + | chr3.4:75364450-75364469 | None:intergenic | 15.0% |
| !!! | TATGACTAAATACATTTTTA+TGG | + | chr3.4:75365085-75365104 | None:intergenic | 15.0% |
| !!! | TATTATTGCATTGATAAATA+TGG | - | chr3.4:75363812-75363831 | MS.gene074414:intron | 15.0% |
| !!! | TTCAACAAATGATTTTTATT+TGG | - | chr3.4:75365242-75365261 | MS.gene074414:intron | 15.0% |
| !! | AAGTAATGATTAATAATCAC+AGG | - | chr3.4:75363890-75363909 | MS.gene074414:intron | 20.0% |
| !! | AATAATCAATTTGGATTTGT+GGG | - | chr3.4:75366284-75366303 | MS.gene074414:intron | 20.0% |
| !! | AATTCAGAAAAACAAAATCT+TGG | + | chr3.4:75365857-75365876 | None:intergenic | 20.0% |
| !! | CAATAACAAAATTACAATTG+TGG | - | chr3.4:75365423-75365442 | MS.gene074414:CDS | 20.0% |
| !! | CATATATTACAACTGAAAAT+TGG | + | chr3.4:75363714-75363733 | None:intergenic | 20.0% |
| !! | GCATATTAAGAAGATAATAT+GGG | + | chr3.4:75365765-75365784 | None:intergenic | 20.0% |
| !! | TTAATATGCCATAAAATCAT+TGG | - | chr3.4:75365776-75365795 | MS.gene074414:intron | 20.0% |
| !! | TTATTAATGACACGTAAAAA+TGG | + | chr3.4:75365204-75365223 | None:intergenic | 20.0% |
| !!! | ATTTACATATTTTATGCTTG+AGG | - | chr3.4:75365908-75365927 | MS.gene074414:intron | 20.0% |
| !!! | CAATTTTTTTTTCTGATTTG+TGG | - | chr3.4:75364144-75364163 | MS.gene074414:intron | 20.0% |
| !!! | CTACTCAATTTTTTATGTTA+AGG | + | chr3.4:75363987-75364006 | None:intergenic | 20.0% |
| !!! | GACAGATTTTATATAATGAA+GGG | + | chr3.4:75366218-75366237 | None:intergenic | 20.0% |
| !!! | TACATTTTTGAGTTTGTTAA+AGG | + | chr3.4:75364607-75364626 | None:intergenic | 20.0% |
| !!! | TGATCTTTTAAAGTTGATTA+TGG | - | chr3.4:75364900-75364919 | MS.gene074414:intron | 20.0% |
| !!! | TTTGAAACTATATCAATGTA+AGG | - | chr3.4:75365129-75365148 | MS.gene074414:intron | 20.0% |
| ! | AAACATTTGCAACAATCAAT+CGG | + | chr3.4:75366095-75366114 | None:intergenic | 25.0% |
| ! | AAATTGAGTAGAGTCATTAA+AGG | - | chr3.4:75363996-75364015 | MS.gene074414:intron | 25.0% |
| ! | AACTGTTTAATCTTTCTTGA+AGG | - | chr3.4:75363779-75363798 | MS.gene074414:intron | 25.0% |
| ! | AAGTTAGAATCATGATATGA+AGG | + | chr3.4:75364635-75364654 | None:intergenic | 25.0% |
| ! | AATAAAAAAAAAGGGCAACT+TGG | + | chr3.4:75366068-75366087 | None:intergenic | 25.0% |
| ! | ATAAATGAATACTCTTTCTG+TGG | - | chr3.4:75365163-75365182 | MS.gene074414:intron | 25.0% |
| ! | ATGTCTTTAATTGTAGAATG+TGG | - | chr3.4:75365105-75365124 | MS.gene074414:intron | 25.0% |
| ! | CAATAATCAATTTGGATTTG+TGG | - | chr3.4:75366283-75366302 | MS.gene074414:intron | 25.0% |
| ! | CACAAATCCAAATTGATTAT+TGG | + | chr3.4:75366285-75366304 | None:intergenic | 25.0% |
| ! | CTCCATTTCAAATTTCAAAT+AGG | + | chr3.4:75366240-75366259 | None:intergenic | 25.0% |
| ! | GGCATATTAAGAAGATAATA+TGG | + | chr3.4:75365766-75365785 | None:intergenic | 25.0% |
| ! | TAATTGAAGGATCAACAAAA+AGG | + | chr3.4:75364577-75364596 | None:intergenic | 25.0% |
| ! | TATATCTCCAATCAAAAACA+TGG | + | chr3.4:75364308-75364327 | None:intergenic | 25.0% |
| ! | TGTCTTTAATTGTAGAATGT+GGG | - | chr3.4:75365106-75365125 | MS.gene074414:intron | 25.0% |
| ! | TTCAACTAATCCAAGTATAT+AGG | + | chr3.4:75364340-75364359 | None:intergenic | 25.0% |
| ! | TTGTATTTAAGCAGAAAAAG+AGG | - | chr3.4:75364186-75364205 | MS.gene074414:intron | 25.0% |
| ! | TTTCTGCTTAAATACAATTG+AGG | + | chr3.4:75364183-75364202 | None:intergenic | 25.0% |
| !! | AAACAGTTTTACTTTAGTGT+CGG | + | chr3.4:75363767-75363786 | None:intergenic | 25.0% |
| !! | AATCATTTGTTGAAGAAACA+AGG | + | chr3.4:75365236-75365255 | None:intergenic | 25.0% |
| !! | GGACAGATTTTATATAATGA+AGG | + | chr3.4:75366219-75366238 | None:intergenic | 25.0% |
| !! | GTCCTATTTGAAATTTGAAA+TGG | - | chr3.4:75366235-75366254 | MS.gene074414:intron | 25.0% |
| !! | TCAAAAGTTACAGCATTTTA+TGG | - | chr3.4:75364230-75364249 | MS.gene074414:intron | 25.0% |
| !! | TTGAATTTTGTAGATAAGTC+TGG | + | chr3.4:75363597-75363616 | None:intergenic | 25.0% |
| !! | TTTGTTGCTTCAATATTCAT+AGG | - | chr3.4:75364657-75364676 | MS.gene074414:CDS | 25.0% |
| !!! | AATTCTCATTTTTATCTCAC+TGG | - | chr3.4:75365881-75365900 | MS.gene074414:intron | 25.0% |
| !!! | ACTGTTTTAACCTATATACT+TGG | - | chr3.4:75364327-75364346 | MS.gene074414:intron | 25.0% |
| !!! | ATTCTCATTTTTATCTCACT+GGG | - | chr3.4:75365882-75365901 | MS.gene074414:intron | 25.0% |
| !!! | TTTTTGAGTTTGTTAAAGGT+TGG | + | chr3.4:75364603-75364622 | None:intergenic | 25.0% |
| AAAACATTAGTGATCGACAA+AGG | - | chr3.4:75364493-75364512 | MS.gene074414:intron | 30.0% | |
| AAACATTAGTGATCGACAAA+GGG | - | chr3.4:75364494-75364513 | MS.gene074414:intron | 30.0% | |
| AAATAAGCGACGATATATGA+TGG | + | chr3.4:75366461-75366480 | None:intergenic | 30.0% | |
| ACCTTATTGTTTGATATTGC+CGG | - | chr3.4:75366030-75366049 | MS.gene074414:intron | 30.0% | |
| ATAGCAACAACCTTTATGTT+AGG | - | chr3.4:75366371-75366390 | MS.gene074414:intron | 30.0% | |
| ATCGGCAGCAATAAAAAAAA+AGG | + | chr3.4:75366077-75366096 | None:intergenic | 30.0% | |
| ATTTGGACTTTAACACTACT+AGG | - | chr3.4:75363866-75363885 | MS.gene074414:intron | 30.0% | |
| CCAAAAATATCTACATCACA+TGG | + | chr3.4:75365378-75365397 | None:intergenic | 30.0% | |
| CGGAAGAGGAAAAAATAATT+AGG | + | chr3.4:75365496-75365515 | None:intergenic | 30.0% | |
| GAAACTATATCAATGTAAGG+TGG | - | chr3.4:75365132-75365151 | MS.gene074414:intron | 30.0% | |
| GATTTATTCTCTATGGTAAG+TGG | - | chr3.4:75364121-75364140 | MS.gene074414:intron | 30.0% | |
| GTCAAGTGATTTATTCTCTA+TGG | - | chr3.4:75364114-75364133 | MS.gene074414:intron | 30.0% | |
| TAAAGGTTGGACTTAATTGA+AGG | + | chr3.4:75364590-75364609 | None:intergenic | 30.0% | |
| TATACTTTATGGTTACACCT+TGG | - | chr3.4:75364783-75364802 | MS.gene074414:intron | 30.0% | |
| TCCAATCAAAAACATGGATT+CGG | + | chr3.4:75364302-75364321 | None:intergenic | 30.0% | |
| TCGGCAGCAATAAAAAAAAA+GGG | + | chr3.4:75366076-75366095 | None:intergenic | 30.0% | |
| TGATTGTTGCAAATGTTTGT+TGG | - | chr3.4:75366097-75366116 | MS.gene074414:intron | 30.0% | |
| TTTAAGCAGAAAAAGAGGTT+TGG | - | chr3.4:75364191-75364210 | MS.gene074414:intron | 30.0% | |
| TTTGGACTTTAACACTACTA+GGG | - | chr3.4:75363867-75363886 | MS.gene074414:intron | 30.0% | |
| ! | AATCCTTTTCAATCTGTTGA+AGG | + | chr3.4:75365591-75365610 | None:intergenic | 30.0% |
| ! | AGAGAAGTCCAATGATTTTA+TGG | + | chr3.4:75365787-75365806 | None:intergenic | 30.0% |
| ! | CAACAGATTGAAAAGGATTT+TGG | - | chr3.4:75365592-75365611 | MS.gene074414:intron | 30.0% |
| ! | CCATGTGATGTAGATATTTT+TGG | - | chr3.4:75365375-75365394 | MS.gene074414:CDS | 30.0% |
| ! | GCATTTTGAATAGGTTTATG+TGG | + | chr3.4:75364946-75364965 | None:intergenic | 30.0% |
| !! | GGCATTTGAAGTTTTAACAA+TGG | + | chr3.4:75366156-75366175 | None:intergenic | 30.0% |
| !! | GTGGTTTAGTTCTACAATAA+TGG | - | chr3.4:75365955-75365974 | MS.gene074414:CDS | 30.0% |
| !! | TACACTGAAGCATTTTGAAT+AGG | + | chr3.4:75364955-75364974 | None:intergenic | 30.0% |
| !! | TTTCTAAAACAAGTAGTCCA+CGG | + | chr3.4:75364067-75364086 | None:intergenic | 30.0% |
| !!! | TTATTTTTTCCTCTTCCGAA+AGG | - | chr3.4:75365498-75365517 | MS.gene074414:CDS | 30.0% |
| AAATATGACGATGCAACGTA+TGG | + | chr3.4:75364397-75364416 | None:intergenic | 35.0% | |
| AAGGGGGAATCAATTAGAAA+AGG | + | chr3.4:75365701-75365720 | None:intergenic | 35.0% | |
| AATATCTACATCACATGGAC+TGG | + | chr3.4:75365373-75365392 | None:intergenic | 35.0% | |
| AATCAATTTGGATTTGTGGG+AGG | - | chr3.4:75366287-75366306 | MS.gene074414:intron | 35.0% | |
| AATGAGTTTCATTTATGCCG+TGG | - | chr3.4:75364047-75364066 | MS.gene074414:CDS | 35.0% | |
| ACAAGTTTCCGGTTATGAAT+GGG | + | chr3.4:75365035-75365054 | None:intergenic | 35.0% | |
| ACGCCAATATTATCAACACT+TGG | + | chr3.4:75365008-75365027 | None:intergenic | 35.0% | |
| AGTCATGATTCCAAACCTTT+CGG | + | chr3.4:75365516-75365535 | None:intergenic | 35.0% | |
| ATATCTACATCACATGGACT+GGG | + | chr3.4:75365372-75365391 | None:intergenic | 35.0% | |
| ATGAACAGCAACAAAAGCAA+TGG | + | chr3.4:75364545-75364564 | None:intergenic | 35.0% | |
| ATTGTCTGCTTGCTCAAATA+TGG | + | chr3.4:75364694-75364713 | None:intergenic | 35.0% | |
| CCAATCAAAAACATGGATTC+GGG | + | chr3.4:75364301-75364320 | None:intergenic | 35.0% | |
| CGCCAATATTATCAACACTT+GGG | + | chr3.4:75365007-75365026 | None:intergenic | 35.0% | |
| CTGCTTAAATACAATTGAGG+AGG | + | chr3.4:75364180-75364199 | None:intergenic | 35.0% | |
| GGGAAGGATGATATACTTTA+TGG | - | chr3.4:75364772-75364791 | MS.gene074414:intron | 35.0% | |
| GTCAAAGTGACATACAACAA+TGG | - | chr3.4:75364814-75364833 | MS.gene074414:intron | 35.0% | |
| TCTCCTTCAACAGATTGAAA+AGG | - | chr3.4:75365585-75365604 | MS.gene074414:intron | 35.0% | |
| TGCATACTATCTGGATTACA+AGG | - | chr3.4:75366428-75366447 | MS.gene074414:intron | 35.0% | |
| TGGAATAGGGTTTAAGTAAC+AGG | + | chr3.4:75363553-75363572 | None:intergenic | 35.0% | |
| TTGAAGGATCAACAAAAAGG+AGG | + | chr3.4:75364574-75364593 | None:intergenic | 35.0% | |
| TTGGAATCATGACTTCTTCT+GGG | - | chr3.4:75365522-75365541 | MS.gene074414:intron | 35.0% | |
| TTTCCAATTTCATGCAAGCT+AGG | + | chr3.4:75365282-75365301 | None:intergenic | 35.0% | |
| ! | ATAGTTCTACACAACAGTCT+GGG | + | chr3.4:75365985-75366004 | None:intergenic | 35.0% |
| ! | GTAAAAATGGAAAAGAGTGC+AGG | + | chr3.4:75365191-75365210 | None:intergenic | 35.0% |
| ! | GTCACTTGTCTTTTGTCATT+TGG | - | chr3.4:75365933-75365952 | MS.gene074414:CDS | 35.0% |
| ! | TTACCTAGCTTGCATGAAAT+TGG | - | chr3.4:75365276-75365295 | MS.gene074414:intron | 35.0% |
| ! | TTTGGAATCATGACTTCTTC+TGG | - | chr3.4:75365521-75365540 | MS.gene074414:intron | 35.0% |
| !! | ACTTGTCTTTTGTCATTTGG+TGG | - | chr3.4:75365936-75365955 | MS.gene074414:CDS | 35.0% |
| !! | CTCCCAAGTGTTGATAATAT+TGG | - | chr3.4:75365002-75365021 | MS.gene074414:intron | 35.0% |
| !! | GCTGTAACTTTTGAAGATCT+GGG | + | chr3.4:75364224-75364243 | None:intergenic | 35.0% |
| !! | TGCTGTAACTTTTGAAGATC+TGG | + | chr3.4:75364225-75364244 | None:intergenic | 35.0% |
| !!! | AGATATTTTTGGCTGTTCGT+CGG | - | chr3.4:75365386-75365405 | MS.gene074414:CDS | 35.0% |
| !!! | CTTGTGTTGTTTTGTGTTGT+AGG | + | chr3.4:75366331-75366350 | None:intergenic | 35.0% |
| AAGGTTTGAACGAACAGCTT+GGG | - | chr3.4:75364752-75364771 | MS.gene074414:intron | 40.0% | |
| AATGCAGCATGCATACTATC+TGG | - | chr3.4:75366419-75366438 | MS.gene074414:intron | 40.0% | |
| ACACAACACTTTAGCAAGAC+AGG | + | chr3.4:75365727-75365746 | None:intergenic | 40.0% | |
| ACTATATCACCCCACACAAT+TGG | + | chr3.4:75366185-75366204 | None:intergenic | 40.0% | |
| AGATAGTATGCATGCTGCAT+TGG | + | chr3.4:75366420-75366439 | None:intergenic | 40.0% | |
| AGATTCCTAAGCTTCTTCAC+AGG | - | chr3.4:75363616-75363635 | MS.gene074414:CDS | 40.0% | |
| CAAGTTTCCGGTTATGAATG+GGG | + | chr3.4:75365034-75365053 | None:intergenic | 40.0% | |
| CACAACACTTTAGCAAGACA+GGG | + | chr3.4:75365726-75365745 | None:intergenic | 40.0% | |
| CACAAGTTTCCGGTTATGAA+TGG | + | chr3.4:75365036-75365055 | None:intergenic | 40.0% | |
| CAGCAACAAAAGCAATGGAA+AGG | + | chr3.4:75364540-75364559 | None:intergenic | 40.0% | |
| CATCATCGGAACTTTGTTGA+AGG | - | chr3.4:75364733-75364752 | MS.gene074414:intron | 40.0% | |
| CATGGATTCGGGTAACTATA+TGG | + | chr3.4:75364290-75364309 | None:intergenic | 40.0% | |
| CGTGCAGCCAATAATCAATT+TGG | - | chr3.4:75366275-75366294 | MS.gene074414:intron | 40.0% | |
| CTATATCACCCCACACAATT+GGG | + | chr3.4:75366184-75366203 | None:intergenic | 40.0% | |
| GATTCCTAAGCTTCTTCACA+GGG | - | chr3.4:75363617-75363636 | MS.gene074414:CDS | 40.0% | |
| GCCGGCAATATCAAACAATA+AGG | + | chr3.4:75366034-75366053 | None:intergenic | 40.0% | |
| GGTACACTTACATGTTCGTA+GGG | + | chr3.4:75364269-75364288 | None:intergenic | 40.0% | |
| GTCAGTGATGCCTAACATAA+AGG | + | chr3.4:75366384-75366403 | None:intergenic | 40.0% | |
| TCAGAAGAGTTTCAGACTCT+CGG | + | chr3.4:75365060-75365079 | None:intergenic | 40.0% | |
| TGGTACACTTACATGTTCGT+AGG | + | chr3.4:75364270-75364289 | None:intergenic | 40.0% | |
| TGTTGAAGGAGACCTAGAAT+GGG | + | chr3.4:75365577-75365596 | None:intergenic | 40.0% | |
| TTTACCCTGTGAAGAAGCTT+AGG | + | chr3.4:75363624-75363643 | None:intergenic | 40.0% | |
| ! | AGTTGATTATGGCTCTGTAG+CGG | - | chr3.4:75364911-75364930 | MS.gene074414:intron | 40.0% |
| ! | ATAGTGTAGCTCTGTAGTGT+TGG | - | chr3.4:75363923-75363942 | MS.gene074414:intron | 40.0% |
| ! | CACTTTGACTAGTTCATCCA+AGG | + | chr3.4:75364803-75364822 | None:intergenic | 40.0% |
| ! | CATAGTTCTACACAACAGTC+TGG | + | chr3.4:75365986-75366005 | None:intergenic | 40.0% |
| ! | TTTTCCTCTTCCGAAAGGTT+TGG | - | chr3.4:75365503-75365522 | MS.gene074414:intron | 40.0% |
| !! | CCCGAATCCATGTTTTTGAT+TGG | - | chr3.4:75364298-75364317 | MS.gene074414:intron | 40.0% |
| AATCTGTGTGGGATAAGGCT+TGG | - | chr3.4:75365312-75365331 | MS.gene074414:intron | 45.0% | |
| AATTGTCTGCCCAATCTGTG+TGG | - | chr3.4:75365300-75365319 | MS.gene074414:intron | 45.0% | |
| ACACTTACATGTTCGTAGGG+AGG | + | chr3.4:75364266-75364285 | None:intergenic | 45.0% | |
| ACTTACATGTTCGTAGGGAG+GGG | + | chr3.4:75364264-75364283 | None:intergenic | 45.0% | |
| ACTTTAGCAAGACAGGGAGA+AGG | + | chr3.4:75365720-75365739 | None:intergenic | 45.0% | |
| AGACGAGAGCTAGTTGGAAT+AGG | + | chr3.4:75363567-75363586 | None:intergenic | 45.0% | |
| ATTGTCTGCCCAATCTGTGT+GGG | - | chr3.4:75365301-75365320 | MS.gene074414:intron | 45.0% | |
| CACTTACATGTTCGTAGGGA+GGG | + | chr3.4:75364265-75364284 | None:intergenic | 45.0% | |
| CAGAAGAGTTTCAGACTCTC+GGG | + | chr3.4:75365059-75365078 | None:intergenic | 45.0% | |
| CTGTTGAAGGAGACCTAGAA+TGG | + | chr3.4:75365578-75365597 | None:intergenic | 45.0% | |
| CTTTAGCAAGACAGGGAGAA+GGG | + | chr3.4:75365719-75365738 | None:intergenic | 45.0% | |
| GAAATGAGACGAGAGCTAGT+TGG | + | chr3.4:75363573-75363592 | None:intergenic | 45.0% | |
| GAAGCTGCACTTGCATTGTT+TGG | - | chr3.4:75365646-75365665 | MS.gene074414:intron | 45.0% | |
| GAAGGTTTGAACGAACAGCT+TGG | - | chr3.4:75364751-75364770 | MS.gene074414:intron | 45.0% | |
| GACGAGAGCTAGTTGGAATA+GGG | + | chr3.4:75363566-75363585 | None:intergenic | 45.0% | |
| GATTCCAAACCTTTCGGAAG+AGG | + | chr3.4:75365510-75365529 | None:intergenic | 45.0% | |
| GCATTGTTGAACTCAGGTGA+GGG | + | chr3.4:75364844-75364863 | None:intergenic | 45.0% | |
| TCAGCTGCATTGTTGAACTC+AGG | + | chr3.4:75364850-75364869 | None:intergenic | 45.0% | |
| TGAGTTCAACAATGCAGCTG+AGG | - | chr3.4:75364849-75364868 | MS.gene074414:intron | 45.0% | |
| TGCATTGTTGAACTCAGGTG+AGG | + | chr3.4:75364845-75364864 | None:intergenic | 45.0% | |
| TGTGTCTTGGAATGCTGCAA+CGG | - | chr3.4:75366572-75366591 | MS.gene074414:CDS | 45.0% | |
| TTCTGAACCACCTTGTGTCT+TGG | - | chr3.4:75366559-75366578 | MS.gene074414:intron | 45.0% | |
| TTGCAGCATTCCAAGACACA+AGG | + | chr3.4:75366572-75366591 | None:intergenic | 45.0% | |
| TTTAGCAAGACAGGGAGAAG+GGG | + | chr3.4:75365718-75365737 | None:intergenic | 45.0% | |
| TTTGAACGAACAGCTTGGGA+AGG | - | chr3.4:75364756-75364775 | MS.gene074414:intron | 45.0% | |
| ! | AAGCCTTATCCCACACAGAT+TGG | + | chr3.4:75365313-75365332 | None:intergenic | 45.0% |
| ! | AGCCTTATCCCACACAGATT+GGG | + | chr3.4:75365312-75365331 | None:intergenic | 45.0% |
| ! | ATGCCATTTGCCCAATTGTG+TGG | - | chr3.4:75366171-75366190 | MS.gene074414:intron | 45.0% |
| ! | GCACTTGCATTGTTTGGTTC+TGG | - | chr3.4:75365652-75365671 | MS.gene074414:intron | 45.0% |
| ! | TGCCATTTGCCCAATTGTGT+GGG | - | chr3.4:75366172-75366191 | MS.gene074414:intron | 45.0% |
| ! | TTCTCACGTCGTGCAACTTT+TGG | - | chr3.4:75366504-75366523 | MS.gene074414:intron | 45.0% |
| !! | AACTTGGTGCACTAAATCGC+CGG | + | chr3.4:75366052-75366071 | None:intergenic | 45.0% |
| !! | TGCATTGTTTGGTTCTGGCT+GGG | - | chr3.4:75365657-75365676 | MS.gene074414:intron | 45.0% |
| !! | TTGCATTGTTTGGTTCTGGC+TGG | - | chr3.4:75365656-75365675 | MS.gene074414:intron | 45.0% |
| !!! | CAGGAATTTTAGGTTCTCCC+AGG | + | chr3.4:75366629-75366648 | None:intergenic | 45.0% |
| ACCCCACACAATTGGGCAAA+TGG | + | chr3.4:75366177-75366196 | None:intergenic | 50.0% | |
| AGCAGACAATCGACATGCAC+TGG | - | chr3.4:75364704-75364723 | MS.gene074414:intron | 50.0% | |
| CAGACAATCGACATGCACTG+GGG | - | chr3.4:75364706-75364725 | MS.gene074414:intron | 50.0% | |
| CAGCATTCCAAGACACAAGG+TGG | + | chr3.4:75366569-75366588 | None:intergenic | 50.0% | |
| GCAGACAATCGACATGCACT+GGG | - | chr3.4:75364705-75364724 | MS.gene074414:intron | 50.0% | |
| GCCATTTGCCCAATTGTGTG+GGG | - | chr3.4:75366173-75366192 | MS.gene074414:intron | 50.0% | |
| GCGTCTTCCCCATTCATAAC+CGG | - | chr3.4:75365024-75365043 | MS.gene074414:intron | 50.0% | |
| GGAGGTGATATGCCCATTCT+AGG | - | chr3.4:75365562-75365581 | MS.gene074414:intron | 50.0% | |
| TGCAACGGAACGCTTGACAT+GGG | - | chr3.4:75366587-75366606 | MS.gene074414:CDS | 50.0% | |
| TGCCCAATCTGTGTGGGATA+AGG | - | chr3.4:75365307-75365326 | MS.gene074414:intron | 50.0% | |
| TTAGCAAGACAGGGAGAAGG+GGG | + | chr3.4:75365717-75365736 | None:intergenic | 50.0% | |
| ! | CTTCTGGGAATCCATGCAAC+CGG | - | chr3.4:75365537-75365556 | MS.gene074414:intron | 50.0% |
| ! | GGAGAGGCTTTTGTGAACCT+GGG | - | chr3.4:75366609-75366628 | MS.gene074414:CDS | 50.0% |
| ! | TTCTGGGAATCCATGCAACC+GGG | - | chr3.4:75365538-75365557 | MS.gene074414:intron | 50.0% |
| !! | TGTTTGGTTCTGGCTGGGTT+TGG | - | chr3.4:75365662-75365681 | MS.gene074414:intron | 50.0% |
| ATGGGCATATCACCTCCTCC+CGG | + | chr3.4:75365559-75365578 | None:intergenic | 55.0% | |
| CTGCAACGGAACGCTTGACA+TGG | - | chr3.4:75366586-75366605 | MS.gene074414:CDS | 55.0% | |
| GACTCTCGGGCACAAGTTTC+CGG | + | chr3.4:75365046-75365065 | None:intergenic | 55.0% | |
| GCAACGGAACGCTTGACATG+GGG | - | chr3.4:75366588-75366607 | MS.gene074414:CDS | 55.0% | |
| ! | GGGAGAGGCTTTTGTGAACC+TGG | - | chr3.4:75366608-75366627 | MS.gene074414:CDS | 55.0% |
| !! | TGCACTGGGGAGAGCATCAT+CGG | - | chr3.4:75364719-75364738 | MS.gene074414:intron | 55.0% |
| ATCACCTCCTCCCGGTTGCA+TGG | + | chr3.4:75365551-75365570 | None:intergenic | 60.0% | |
| GAATCCATGCAACCGGGAGG+AGG | - | chr3.4:75365544-75365563 | MS.gene074414:intron | 60.0% | |
| GGAACGCTTGACATGGGGAG+AGG | - | chr3.4:75366593-75366612 | MS.gene074414:CDS | 60.0% | |
| TGGGAATCCATGCAACCGGG+AGG | - | chr3.4:75365541-75365560 | MS.gene074414:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 75363543 | 75366656 | 75363543 | ID=MS.gene074414 |
| chr3.4 | mRNA | 75363543 | 75366656 | 75363543 | ID=MS.gene074414.t1;Parent=MS.gene074414 |
| chr3.4 | exon | 75366561 | 75366656 | 75366561 | ID=MS.gene074414.t1.exon1;Parent=MS.gene074414.t1 |
| chr3.4 | CDS | 75366561 | 75366656 | 75366561 | ID=cds.MS.gene074414.t1;Parent=MS.gene074414.t1 |
| chr3.4 | exon | 75365922 | 75365999 | 75365922 | ID=MS.gene074414.t1.exon2;Parent=MS.gene074414.t1 |
| chr3.4 | CDS | 75365922 | 75365999 | 75365922 | ID=cds.MS.gene074414.t1;Parent=MS.gene074414.t1 |
| chr3.4 | exon | 75365329 | 75365520 | 75365329 | ID=MS.gene074414.t1.exon3;Parent=MS.gene074414.t1 |
| chr3.4 | CDS | 75365329 | 75365520 | 75365329 | ID=cds.MS.gene074414.t1;Parent=MS.gene074414.t1 |
| chr3.4 | exon | 75364508 | 75364679 | 75364508 | ID=MS.gene074414.t1.exon4;Parent=MS.gene074414.t1 |
| chr3.4 | CDS | 75364508 | 75364679 | 75364508 | ID=cds.MS.gene074414.t1;Parent=MS.gene074414.t1 |
| chr3.4 | exon | 75363997 | 75364070 | 75363997 | ID=MS.gene074414.t1.exon5;Parent=MS.gene074414.t1 |
| chr3.4 | CDS | 75363997 | 75364070 | 75363997 | ID=cds.MS.gene074414.t1;Parent=MS.gene074414.t1 |
| chr3.4 | exon | 75363891 | 75363917 | 75363891 | ID=MS.gene074414.t1.exon6;Parent=MS.gene074414.t1 |
| chr3.4 | CDS | 75363891 | 75363917 | 75363891 | ID=cds.MS.gene074414.t1;Parent=MS.gene074414.t1 |
| chr3.4 | exon | 75363750 | 75363773 | 75363750 | ID=MS.gene074414.t1.exon7;Parent=MS.gene074414.t1 |
| chr3.4 | CDS | 75363750 | 75363773 | 75363750 | ID=cds.MS.gene074414.t1;Parent=MS.gene074414.t1 |
| chr3.4 | exon | 75363543 | 75363668 | 75363543 | ID=MS.gene074414.t1.exon8;Parent=MS.gene074414.t1 |
| chr3.4 | CDS | 75363543 | 75363668 | 75363543 | ID=cds.MS.gene074414.t1;Parent=MS.gene074414.t1 |
| Gene Sequence |
| Protein sequence |
