Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074416.t1 | RHN68853.1 | 94.8 | 290 | 15 | 0 | 5 | 294 | 4 | 293 | 2.20E-159 | 571.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074416.t1 | Q9FH04 | 69.5 | 292 | 88 | 1 | 4 | 294 | 7 | 298 | 6.9e-122 | 438.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074416.t1 | A0A396IWN8 | 94.8 | 290 | 15 | 0 | 5 | 294 | 4 | 293 | 1.6e-159 | 571.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050301 | MS.gene074416 | 0.81371 | 2.23E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene074416 | 0.805031 | 1.62E-49 | -1.69E-46 |
| MS.gene060559 | MS.gene074416 | 0.806571 | 7.71E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074416.t1 | MTR_3g079180 | 94.138 | 290 | 17 | 0 | 5 | 294 | 4 | 293 | 0.0 | 563 |
| MS.gene074416.t1 | MTR_5g087710 | 74.740 | 289 | 72 | 1 | 6 | 294 | 11 | 298 | 6.98e-159 | 449 |
| MS.gene074416.t1 | MTR_3g099460 | 56.811 | 301 | 127 | 2 | 1 | 298 | 3 | 303 | 1.73e-115 | 336 |
| MS.gene074416.t1 | MTR_3g099460 | 57.239 | 297 | 124 | 2 | 1 | 294 | 3 | 299 | 2.86e-114 | 335 |
| MS.gene074416.t1 | MTR_3g099460 | 56.146 | 301 | 122 | 3 | 1 | 298 | 3 | 296 | 8.54e-111 | 324 |
| MS.gene074416.t1 | MTR_3g099460 | 56.566 | 297 | 119 | 3 | 1 | 294 | 3 | 292 | 1.61e-109 | 323 |
| MS.gene074416.t1 | MTR_3g079170 | 77.778 | 189 | 28 | 1 | 106 | 294 | 25 | 199 | 4.48e-104 | 306 |
| MS.gene074416.t1 | MTR_1g069430 | 51.399 | 286 | 136 | 3 | 10 | 294 | 4 | 287 | 3.04e-95 | 286 |
| MS.gene074416.t1 | MTR_7g099040 | 50.000 | 294 | 142 | 2 | 1 | 294 | 1 | 289 | 1.34e-94 | 285 |
| MS.gene074416.t1 | MTR_3g099460 | 59.740 | 231 | 92 | 1 | 65 | 294 | 6 | 236 | 3.60e-90 | 272 |
| MS.gene074416.t1 | MTR_7g068330 | 47.508 | 301 | 154 | 3 | 4 | 301 | 3 | 302 | 4.37e-89 | 271 |
| MS.gene074416.t1 | MTR_6g068930 | 48.746 | 279 | 138 | 3 | 14 | 292 | 10 | 283 | 3.69e-88 | 268 |
| MS.gene074416.t1 | MTR_3g089940 | 48.387 | 279 | 143 | 1 | 11 | 289 | 6 | 283 | 3.47e-87 | 265 |
| MS.gene074416.t1 | MTR_3g089940 | 48.387 | 279 | 143 | 1 | 11 | 289 | 6 | 283 | 5.81e-87 | 265 |
| MS.gene074416.t1 | MTR_3g089977 | 48.029 | 279 | 144 | 1 | 11 | 289 | 6 | 283 | 8.30e-87 | 265 |
| MS.gene074416.t1 | MTR_3g089940 | 48.188 | 276 | 142 | 1 | 14 | 289 | 9 | 283 | 3.61e-86 | 263 |
| MS.gene074416.t1 | MTR_3g089940 | 48.188 | 276 | 142 | 1 | 14 | 289 | 9 | 283 | 8.90e-86 | 262 |
| MS.gene074416.t1 | MTR_3g089970 | 47.405 | 289 | 147 | 2 | 1 | 289 | 1 | 284 | 1.56e-85 | 262 |
| MS.gene074416.t1 | MTR_7g068320 | 46.844 | 301 | 155 | 4 | 10 | 306 | 16 | 315 | 1.95e-85 | 262 |
| MS.gene074416.t1 | MTR_0001s0660 | 44.484 | 281 | 150 | 4 | 14 | 293 | 8 | 283 | 7.01e-81 | 252 |
| MS.gene074416.t1 | MTR_5g045710 | 44.161 | 274 | 148 | 4 | 14 | 286 | 8 | 277 | 1.12e-77 | 241 |
| MS.gene074416.t1 | MTR_5g045710 | 43.590 | 195 | 106 | 3 | 93 | 286 | 3 | 194 | 7.63e-52 | 172 |
| MS.gene074416.t1 | MTR_8g095220 | 31.317 | 281 | 178 | 8 | 9 | 280 | 47 | 321 | 6.70e-28 | 112 |
| MS.gene074416.t1 | MTR_8g095220 | 30.682 | 264 | 170 | 6 | 9 | 264 | 47 | 305 | 4.45e-27 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074416.t1 | AT5G42250 | 69.521 | 292 | 88 | 1 | 4 | 294 | 7 | 298 | 2.93e-155 | 439 |
| MS.gene074416.t1 | AT4G22110 | 61.538 | 286 | 108 | 2 | 10 | 293 | 11 | 296 | 3.29e-123 | 358 |
| MS.gene074416.t1 | AT4G22110 | 61.538 | 286 | 108 | 2 | 10 | 293 | 11 | 296 | 3.29e-123 | 358 |
| MS.gene074416.t1 | AT1G22430 | 56.536 | 306 | 131 | 2 | 1 | 304 | 1 | 306 | 1.05e-121 | 352 |
| MS.gene074416.t1 | AT1G22430 | 55.663 | 309 | 135 | 2 | 1 | 307 | 1 | 309 | 1.56e-120 | 351 |
| MS.gene074416.t1 | AT1G22430 | 55.663 | 309 | 135 | 2 | 1 | 307 | 1 | 309 | 1.56e-120 | 351 |
| MS.gene074416.t1 | AT1G22440 | 59.091 | 286 | 115 | 2 | 10 | 293 | 8 | 293 | 1.09e-118 | 347 |
| MS.gene074416.t1 | AT4G22110 | 61.719 | 256 | 96 | 2 | 10 | 263 | 11 | 266 | 1.65e-109 | 319 |
| MS.gene074416.t1 | AT1G22430 | 56.296 | 270 | 116 | 2 | 1 | 268 | 1 | 270 | 7.33e-106 | 310 |
| MS.gene074416.t1 | AT1G22430 | 56.296 | 270 | 116 | 2 | 1 | 268 | 1 | 270 | 7.33e-106 | 310 |
| MS.gene074416.t1 | AT5G43940 | 50.526 | 285 | 140 | 1 | 10 | 294 | 4 | 287 | 5.92e-97 | 291 |
| MS.gene074416.t1 | AT5G24760 | 48.630 | 292 | 145 | 3 | 1 | 292 | 1 | 287 | 7.00e-94 | 283 |
| MS.gene074416.t1 | AT5G43940 | 48.148 | 297 | 141 | 2 | 10 | 294 | 4 | 299 | 8.51e-93 | 281 |
| MS.gene074416.t1 | AT1G64710 | 50.865 | 289 | 134 | 5 | 8 | 291 | 2 | 287 | 1.78e-92 | 280 |
| MS.gene074416.t1 | AT1G32780 | 50.825 | 303 | 129 | 6 | 1 | 291 | 1 | 295 | 4.57e-91 | 276 |
| MS.gene074416.t1 | AT1G77120 | 47.670 | 279 | 145 | 1 | 11 | 289 | 5 | 282 | 4.57e-86 | 263 |
| MS.gene074416.t1 | AT5G24760 | 49.049 | 263 | 129 | 3 | 30 | 292 | 1 | 258 | 6.22e-85 | 259 |
| MS.gene074416.t1 | AT5G24760 | 49.049 | 263 | 129 | 3 | 30 | 292 | 1 | 258 | 6.22e-85 | 259 |
| MS.gene074416.t1 | AT1G64710 | 49.813 | 267 | 126 | 5 | 30 | 291 | 1 | 264 | 2.11e-83 | 256 |
| MS.gene074416.t1 | AT1G64710 | 49.537 | 216 | 102 | 4 | 80 | 291 | 6 | 218 | 3.89e-65 | 207 |
| MS.gene074416.t1 | AT5G24760 | 50.286 | 175 | 85 | 2 | 118 | 292 | 1 | 173 | 4.57e-52 | 172 |
| MS.gene074416.t1 | AT5G63620 | 27.941 | 272 | 183 | 6 | 17 | 280 | 57 | 323 | 1.90e-25 | 105 |
| MS.gene074416.t1 | AT5G63620 | 27.941 | 272 | 183 | 6 | 17 | 280 | 57 | 323 | 2.03e-25 | 105 |
| MS.gene074416.t1 | AT5G63620 | 27.755 | 245 | 168 | 4 | 17 | 254 | 57 | 299 | 9.10e-25 | 102 |
Find 79 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCCCGTTGGGAGGAATTTC+TGG | 0.006237 | 3.4:-75374568 | None:intergenic |
| GATATATGATCTCTCCTTTC+AGG | 0.200277 | 3.4:-75374477 | None:intergenic |
| TCCTTTCAGGTCTGTGAATC+TGG | 0.240774 | 3.4:-75374464 | None:intergenic |
| ATTATACCTTTACATCTTAT+AGG | 0.250215 | 3.4:-75373590 | None:intergenic |
| GCCTCATGGCCCAGAATTCT+TGG | 0.272725 | 3.4:-75373997 | None:intergenic |
| TGTGGAGCAACTAAGATTAT+AGG | 0.294026 | 3.4:+75375128 | MS.gene074416:CDS |
| ATTTAATCAGGAAAGAAGTT+TGG | 0.338330 | 3.4:+75375415 | MS.gene074416:intron |
| GCTGAGGGAGCCAGACTTTG+TGG | 0.365458 | 3.4:+75375110 | MS.gene074416:CDS |
| CTCCTATACCACAACTTAGA+AGG | 0.376928 | 3.4:-75374594 | None:intergenic |
| CCCCGTTGGGAGGAATTTCT+GGG | 0.393869 | 3.4:-75374567 | None:intergenic |
| CTTAGTTGCTCCACAAAGTC+TGG | 0.399813 | 3.4:-75375120 | None:intergenic |
| ACCCAGAAATTCCTCCCAAC+GGG | 0.406796 | 3.4:+75374566 | MS.gene074416:CDS |
| TTCTGGGCCATGAGGCAATT+GGG | 0.419100 | 3.4:+75374004 | MS.gene074416:CDS |
| GTGTGTTGGTATGGCGTCAT+TGG | 0.452631 | 3.4:+75375746 | MS.gene074416:CDS |
| CACCAATGCCATGTGAAGTT+CGG | 0.452924 | 3.4:+75373758 | MS.gene074416:CDS |
| TCCCATTCAAAGTTTCTCCT+TGG | 0.454915 | 3.4:+75374422 | MS.gene074416:CDS |
| CACATTCTCAAAAGCTTGAA+AGG | 0.456163 | 3.4:+75375888 | MS.gene074416:CDS |
| ATTAGTACAAAGGTTGCTCT+TGG | 0.458794 | 3.4:-75374398 | None:intergenic |
| AGAACAGCAGGTGTGGAGCC+AGG | 0.460110 | 3.4:+75374799 | MS.gene074416:CDS |
| CTTAGAAGGCACGCCCCGTT+GGG | 0.460209 | 3.4:-75374580 | None:intergenic |
| TCTGTACACTCCCCACAATC+TGG | 0.473910 | 3.4:-75374364 | None:intergenic |
| ATTCTGGGCCATGAGGCAAT+TGG | 0.475497 | 3.4:+75374003 | MS.gene074416:CDS |
| TGGGAGCAAACCTGTGAGCC+AGG | 0.479328 | 3.4:+75375468 | MS.gene074416:CDS |
| TCAATCACCAGTGGCTCACC+AGG | 0.480883 | 3.4:-75373718 | None:intergenic |
| CTTACAGACTTTATCCATGC+TGG | 0.487795 | 3.4:+75375439 | MS.gene074416:CDS |
| TGGGTCAATCTTTGTTACAT+TGG | 0.489612 | 3.4:-75374548 | None:intergenic |
| TTGTAGGGGTAGGTGCTGCT+TGG | 0.489655 | 3.4:+75374776 | MS.gene074416:intron |
| TTTATCCATGCTGGAAAATG+TGG | 0.495400 | 3.4:+75375448 | MS.gene074416:CDS |
| TGCCTTCTAAGTTGTGGTAT+AGG | 0.499801 | 3.4:+75374592 | MS.gene074416:CDS |
| ATCCAAGGAGAAACTTTGAA+TGG | 0.501550 | 3.4:-75374424 | None:intergenic |
| GATGTAACTGAAGTTACAAA+AGG | 0.502449 | 3.4:+75374316 | MS.gene074416:CDS |
| TTGCTTTGAGTGTGTTGGTA+TGG | 0.508900 | 3.4:+75375737 | MS.gene074416:CDS |
| TTTGTTTCCTAGGTTGCTGA+GGG | 0.512157 | 3.4:+75375095 | MS.gene074416:intron |
| CGCGTATGCTTCTTGCAGAA+AGG | 0.512539 | 3.4:+75375776 | MS.gene074416:CDS |
| GCAGAAACTACAACAAATGA+AGG | 0.513094 | 3.4:+75373557 | MS.gene074416:CDS |
| TCCAAGGAGAAACTTTGAAT+GGG | 0.517705 | 3.4:-75374423 | None:intergenic |
| CGAACTTCACATGGCATTGG+TGG | 0.518702 | 3.4:-75373757 | None:intergenic |
| CTAAGTTGTGGTATAGGAGC+GGG | 0.522848 | 3.4:+75374598 | MS.gene074416:CDS |
| GAACAGCAGGTGTGGAGCCA+GGG | 0.526658 | 3.4:+75374800 | MS.gene074416:CDS |
| CAAGACATCACTACTGTTGG+TGG | 0.526980 | 3.4:-75375911 | None:intergenic |
| GATTATTGCTTTGAGTGTGT+TGG | 0.529300 | 3.4:+75375732 | MS.gene074416:CDS |
| ATAGGGTTGTGGAAAGTGTA+GGG | 0.529616 | 3.4:+75374290 | MS.gene074416:intron |
| GGGAGACCTATAAGATGTAA+AGG | 0.533897 | 3.4:+75373584 | MS.gene074416:CDS |
| ACTTAGAAGGCACGCCCCGT+TGG | 0.534372 | 3.4:-75374581 | None:intergenic |
| GGAGGCTAGACCTGGCTCAC+AGG | 0.536572 | 3.4:-75375478 | None:intergenic |
| GGTGCTGCTTGGAGAACAGC+AGG | 0.537682 | 3.4:+75374787 | MS.gene074416:CDS |
| ATCCGAACTTCACATGGCAT+TGG | 0.551966 | 3.4:-75373760 | None:intergenic |
| GTCATCACAGAGATGACTGA+TGG | 0.552088 | 3.4:+75375702 | MS.gene074416:CDS |
| AACCAAGACATCACTACTGT+TGG | 0.556218 | 3.4:-75375914 | None:intergenic |
| GGTTGTGGAAAGTGTAGGGA+AGG | 0.561446 | 3.4:+75374294 | MS.gene074416:CDS |
| GTTTGTTTCCTAGGTTGCTG+AGG | 0.562555 | 3.4:+75375094 | MS.gene074416:intron |
| AATAGGGTTGTGGAAAGTGT+AGG | 0.564211 | 3.4:+75374289 | MS.gene074416:intron |
| TGAATGGGAAATTAGTACAA+AGG | 0.565863 | 3.4:-75374408 | None:intergenic |
| TCTAAGTTGTGGTATAGGAG+CGG | 0.575867 | 3.4:+75374597 | MS.gene074416:CDS |
| AATCTGGTGTTCTCATGTCT+AGG | 0.578514 | 3.4:-75374448 | None:intergenic |
| ACTACAACAAATGAAGGAGA+AGG | 0.580315 | 3.4:+75373563 | MS.gene074416:CDS |
| AAGAAGACCTGGTGAGCCAC+TGG | 0.581478 | 3.4:+75373711 | MS.gene074416:CDS |
| TCATCACAGAGATGACTGAT+GGG | 0.582479 | 3.4:+75375703 | MS.gene074416:CDS |
| AAACTCACCCAATTGCCTCA+TGG | 0.588794 | 3.4:-75374011 | None:intergenic |
| GGGGCGTGCCTTCTAAGTTG+TGG | 0.589755 | 3.4:+75374586 | MS.gene074416:CDS |
| ATGCGGATCCGAACTTCACA+TGG | 0.591473 | 3.4:-75373766 | None:intergenic |
| ACTGGTGATTGAAGAGATCA+TGG | 0.592447 | 3.4:+75373729 | MS.gene074416:CDS |
| TTCTCATGTCTAGGCATCCA+AGG | 0.596709 | 3.4:-75374439 | None:intergenic |
| GCGGCAGTTGCAAGAAGACC+TGG | 0.599166 | 3.4:+75373700 | MS.gene074416:intron |
| AGAAGGCACGCCCCGTTGGG+AGG | 0.613599 | 3.4:-75374577 | None:intergenic |
| TCCAAGAATTCTGGGCCATG+AGG | 0.616098 | 3.4:+75373996 | MS.gene074416:CDS |
| GACCCAGAAATTCCTCCCAA+CGG | 0.618181 | 3.4:+75374565 | MS.gene074416:CDS |
| CTACAACAAATGAAGGAGAA+GGG | 0.624377 | 3.4:+75373564 | MS.gene074416:CDS |
| TGCTTGGAGAACAGCAGGTG+TGG | 0.624709 | 3.4:+75374792 | MS.gene074416:CDS |
| ACCAGATTCACAGACCTGAA+AGG | 0.631224 | 3.4:+75374463 | MS.gene074416:CDS |
| TTATCCATGCTGGAAAATGT+GGG | 0.638769 | 3.4:+75375449 | MS.gene074416:CDS |
| ATGATCTCTTCAATCACCAG+TGG | 0.657809 | 3.4:-75373727 | None:intergenic |
| CATCACAGAGATGACTGATG+GGG | 0.667922 | 3.4:+75375704 | MS.gene074416:CDS |
| ATCACAGAGATGACTGATGG+GGG | 0.673303 | 3.4:+75375705 | MS.gene074416:CDS |
| AAAATAGCTACTGTAGACCC+TGG | 0.682475 | 3.4:-75374817 | None:intergenic |
| CCCAGAAATTCCTCCCAACG+GGG | 0.690294 | 3.4:+75374567 | MS.gene074416:CDS |
| AGATAGAAGAACATATAATG+CGG | 0.705597 | 3.4:-75373783 | None:intergenic |
| AAGTTTCAGCGAGTACACTG+TGG | 0.726816 | 3.4:+75374516 | MS.gene074416:CDS |
| GGTGATTGAAGAGATCATGG+TGG | 0.829880 | 3.4:+75373732 | MS.gene074416:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTATATATATAATCATAT+TGG | + | chr3.4:75374166-75374185 | MS.gene074416:intron | 10.0% |
| !! | AAATAAAGAATTAATCTTTC+AGG | - | chr3.4:75375502-75375521 | None:intergenic | 15.0% |
| !! | AAATCACAAACTAATAATTT+AGG | - | chr3.4:75374048-75374067 | None:intergenic | 15.0% |
| !! | CAAATTATTATTAATTGAAG+TGG | - | chr3.4:75375036-75375055 | None:intergenic | 15.0% |
| !!! | AATCAATTTTTATGTGAAAT+AGG | + | chr3.4:75374272-75374291 | MS.gene074416:intron | 15.0% |
| !!! | ATCAATTTTTATGTGAAATA+GGG | + | chr3.4:75374273-75374292 | MS.gene074416:intron | 15.0% |
| !! | ATTATACCTTTACATCTTAT+AGG | - | chr3.4:75373593-75373612 | None:intergenic | 20.0% |
| !! | CCAATATTAATTCTAAATTG+TGG | + | chr3.4:75374668-75374687 | MS.gene074416:intron | 20.0% |
| !! | CTAACTGATTAAATATAGAA+AGG | + | chr3.4:75374644-75374663 | MS.gene074416:intron | 20.0% |
| !!! | ATTACTCATTATTTCTCAAT+CGG | + | chr3.4:75375072-75375091 | MS.gene074416:intron | 20.0% |
| !!! | ATTTAAAACTTCCATTTGTA+GGG | + | chr3.4:75374761-75374780 | MS.gene074416:intron | 20.0% |
| !!! | CCACAATTTAGAATTAATAT+TGG | - | chr3.4:75374671-75374690 | None:intergenic | 20.0% |
| !!! | TATTTAAAACTTCCATTTGT+AGG | + | chr3.4:75374760-75374779 | MS.gene074416:intron | 20.0% |
| !!! | TGTTTTTGAAAATGTTTTGA+AGG | + | chr3.4:75373957-75373976 | MS.gene074416:intron | 20.0% |
| ! | AAATTATGATTCTCAGTTGT+TGG | + | chr3.4:75375860-75375879 | MS.gene074416:intron | 25.0% |
| ! | AATGAATTGGTCATGAATAA+AGG | + | chr3.4:75374694-75374713 | MS.gene074416:intron | 25.0% |
| ! | AGACAAATTCAGATTTAGTT+CGG | - | chr3.4:75375673-75375692 | None:intergenic | 25.0% |
| ! | AGATAGAAGAACATATAATG+CGG | - | chr3.4:75373786-75373805 | None:intergenic | 25.0% |
| ! | ATTTAATCAGGAAAGAAGTT+TGG | + | chr3.4:75375415-75375434 | MS.gene074416:intron | 25.0% |
| ! | CTGCCTAAATAAATATAAGA+GGG | - | chr3.4:75375811-75375830 | None:intergenic | 25.0% |
| ! | TAAAGAATTAATCTTTCAGG+AGG | - | chr3.4:75375499-75375518 | None:intergenic | 25.0% |
| ! | TAAATTGTGGTCAAATGAAT+TGG | + | chr3.4:75374681-75374700 | MS.gene074416:intron | 25.0% |
| ! | TCACCCTCTTATATTTATTT+AGG | + | chr3.4:75375805-75375824 | MS.gene074416:intron | 25.0% |
| ! | TCTGCCTAAATAAATATAAG+AGG | - | chr3.4:75375812-75375831 | None:intergenic | 25.0% |
| ! | TGAATGATTAAAAAACACAG+AGG | - | chr3.4:75373879-75373898 | None:intergenic | 25.0% |
| ! | TTACTAGAATTGGGAAATTA+TGG | + | chr3.4:75375271-75375290 | MS.gene074416:intron | 25.0% |
| ! | TTCTGTATGATTTCCTTTAT+TGG | + | chr3.4:75375338-75375357 | MS.gene074416:intron | 25.0% |
| !! | GTGTTTGTTCTTATTTAATC+AGG | + | chr3.4:75375403-75375422 | MS.gene074416:intron | 25.0% |
| !! | TTTAAAACTTCCATTTGTAG+GGG | + | chr3.4:75374762-75374781 | MS.gene074416:intron | 25.0% |
| AAGAGGGAAAATTAAAGACT+TGG | - | chr3.4:75375538-75375557 | None:intergenic | 30.0% | |
| ATCTTCAATCTCATGCAAAA+AGG | - | chr3.4:75375589-75375608 | None:intergenic | 30.0% | |
| ATTAATTGAAGTGGCACTAA+TGG | - | chr3.4:75375027-75375046 | None:intergenic | 30.0% | |
| ATTGGTCATGAATAAAGGAA+AGG | + | chr3.4:75374699-75374718 | MS.gene074416:intron | 30.0% | |
| GAAATGCATAAGATACTACT+AGG | - | chr3.4:75374075-75374094 | None:intergenic | 30.0% | |
| GATGTAACTGAAGTTACAAA+AGG | + | chr3.4:75374316-75374335 | MS.gene074416:CDS | 30.0% | |
| TGAATGGGAAATTAGTACAA+AGG | - | chr3.4:75374411-75374430 | None:intergenic | 30.0% | |
| ! | AACCCAGAAAAATTTGAAGT+CGG | + | chr3.4:75375161-75375180 | MS.gene074416:CDS | 30.0% |
| ! | AATTTTTCTACCAGATTGTG+GGG | + | chr3.4:75374354-75374373 | MS.gene074416:CDS | 30.0% |
| ! | AGTTTTGCATTATAACCTCA+AGG | + | chr3.4:75374962-75374981 | MS.gene074416:intron | 30.0% |
| ! | CAATTTTTCTACCAGATTGT+GGG | + | chr3.4:75374353-75374372 | MS.gene074416:CDS | 30.0% |
| ! | GTCTATCAAAATTTTCCATG+AGG | + | chr3.4:75374921-75374940 | MS.gene074416:intron | 30.0% |
| ! | GTTTTGCATTATAACCTCAA+GGG | + | chr3.4:75374963-75374982 | MS.gene074416:intron | 30.0% |
| ! | TTTTATGTGAAATAGGGTTG+TGG | + | chr3.4:75374279-75374298 | MS.gene074416:intron | 30.0% |
| !! | ATTTTTGGACTAGGATCTAT+TGG | + | chr3.4:75374835-75374854 | MS.gene074416:CDS | 30.0% |
| !!! | AATTTTCCCTCTTGTTTCTA+AGG | + | chr3.4:75375545-75375564 | MS.gene074416:intron | 30.0% |
| !!! | ATACCGACTTCAAATTTTTC+TGG | - | chr3.4:75375167-75375186 | None:intergenic | 30.0% |
| !!! | ATTTTCCCTCTTGTTTCTAA+GGG | + | chr3.4:75375546-75375565 | MS.gene074416:intron | 30.0% |
| !!! | CGGTATGAACTGTTTTTTAA+AGG | + | chr3.4:75375181-75375200 | MS.gene074416:intron | 30.0% |
| !!! | TACCGACTTCAAATTTTTCT+GGG | - | chr3.4:75375166-75375185 | None:intergenic | 30.0% |
| AATTTGAACTTTGTCCCTTG+AGG | - | chr3.4:75374980-75374999 | None:intergenic | 35.0% | |
| ACAAAGTTCAAATTCCCTTG+AGG | + | chr3.4:75374986-75375005 | MS.gene074416:intron | 35.0% | |
| ACAGAACATGTGATAGAAAC+TGG | - | chr3.4:75375324-75375343 | None:intergenic | 35.0% | |
| ACTACAACAAATGAAGGAGA+AGG | + | chr3.4:75373563-75373582 | MS.gene074416:CDS | 35.0% | |
| AGAATTCTTGGAAAAAAGCC+AGG | - | chr3.4:75373988-75374007 | None:intergenic | 35.0% | |
| AGTTAGTATTCTCGTTGCAT+AGG | - | chr3.4:75374630-75374649 | None:intergenic | 35.0% | |
| ATCCAAGGAGAAACTTTGAA+TGG | - | chr3.4:75374427-75374446 | None:intergenic | 35.0% | |
| ATTAGTACAAAGGTTGCTCT+TGG | - | chr3.4:75374401-75374420 | None:intergenic | 35.0% | |
| CACATTCTCAAAAGCTTGAA+AGG | + | chr3.4:75375888-75375907 | MS.gene074416:CDS | 35.0% | |
| CACTGCAATACTATATGTAG+CGG | + | chr3.4:75373681-75373700 | MS.gene074416:intron | 35.0% | |
| CCACAATCTGGTAGAAAAAT+TGG | - | chr3.4:75374355-75374374 | None:intergenic | 35.0% | |
| CTACAACAAATGAAGGAGAA+GGG | + | chr3.4:75373564-75373583 | MS.gene074416:CDS | 35.0% | |
| GATATATGATCTCTCCTTTC+AGG | - | chr3.4:75374480-75374499 | None:intergenic | 35.0% | |
| GATTCTGAATTCTTGCATAG+TGG | - | chr3.4:75375374-75375393 | None:intergenic | 35.0% | |
| GCAGAAACTACAACAAATGA+AGG | + | chr3.4:75373557-75373576 | MS.gene074416:CDS | 35.0% | |
| GCTTGCAGATTACTAGAATT+GGG | + | chr3.4:75375262-75375281 | MS.gene074416:intron | 35.0% | |
| TACTTCCCTTAGAAACAAGA+GGG | - | chr3.4:75375554-75375573 | None:intergenic | 35.0% | |
| TCCAAGGAGAAACTTTGAAT+GGG | - | chr3.4:75374426-75374445 | None:intergenic | 35.0% | |
| TGCTTGCAGATTACTAGAAT+TGG | + | chr3.4:75375261-75375280 | MS.gene074416:intron | 35.0% | |
| TGGGTCAATCTTTGTTACAT+TGG | - | chr3.4:75374551-75374570 | None:intergenic | 35.0% | |
| TGGTAGCAATAAGCCAATAA+AGG | - | chr3.4:75375354-75375373 | None:intergenic | 35.0% | |
| TGTGGAGCAACTAAGATTAT+AGG | + | chr3.4:75375128-75375147 | MS.gene074416:CDS | 35.0% | |
| TTATCCATGCTGGAAAATGT+GGG | + | chr3.4:75375449-75375468 | MS.gene074416:CDS | 35.0% | |
| TTTATCCATGCTGGAAAATG+TGG | + | chr3.4:75375448-75375467 | MS.gene074416:CDS | 35.0% | |
| ! | CATTTTATAACCGTCCTCAA+GGG | - | chr3.4:75375003-75375022 | None:intergenic | 35.0% |
| ! | CCAATTTTTCTACCAGATTG+TGG | + | chr3.4:75374352-75374371 | MS.gene074416:CDS | 35.0% |
| ! | GATTATTGCTTTGAGTGTGT+TGG | + | chr3.4:75375732-75375751 | MS.gene074416:CDS | 35.0% |
| ! | TCATTTTATAACCGTCCTCA+AGG | - | chr3.4:75375004-75375023 | None:intergenic | 35.0% |
| !! | GATCTATTGGATTAGCAGTA+AGG | + | chr3.4:75374848-75374867 | MS.gene074416:intron | 35.0% |
| !!! | ACAGTAGCTATTTTTGGACT+AGG | + | chr3.4:75374826-75374845 | MS.gene074416:CDS | 35.0% |
| !!! | GGCTTTTTTCCAAGAATTCT+GGG | + | chr3.4:75373988-75374007 | MS.gene074416:CDS | 35.0% |
| !!! | TGGCTTTTTTCCAAGAATTC+TGG | + | chr3.4:75373987-75374006 | MS.gene074416:CDS | 35.0% |
| AAAATAGCTACTGTAGACCC+TGG | - | chr3.4:75374820-75374839 | None:intergenic | 40.0% | |
| AAACTTCCATTTGTAGGGGT+AGG | + | chr3.4:75374766-75374785 | MS.gene074416:intron | 40.0% | |
| AATCTGGTGTTCTCATGTCT+AGG | - | chr3.4:75374451-75374470 | None:intergenic | 40.0% | |
| ACTGGTGATTGAAGAGATCA+TGG | + | chr3.4:75373729-75373748 | MS.gene074416:CDS | 40.0% | |
| AGTTCAAATTCCCTTGAGGA+CGG | + | chr3.4:75374990-75375009 | MS.gene074416:intron | 40.0% | |
| ATGATCTCTTCAATCACCAG+TGG | - | chr3.4:75373730-75373749 | None:intergenic | 40.0% | |
| ATTCTTGGAAAAAAGCCAGG+AGG | - | chr3.4:75373985-75374004 | None:intergenic | 40.0% | |
| CAGTAAGGACTTCTCAAACT+TGG | + | chr3.4:75374863-75374882 | MS.gene074416:intron | 40.0% | |
| CTACTTCCCTTAGAAACAAG+AGG | - | chr3.4:75375555-75375574 | None:intergenic | 40.0% | |
| CTCCTATACCACAACTTAGA+AGG | - | chr3.4:75374597-75374616 | None:intergenic | 40.0% | |
| CTTACAGACTTTATCCATGC+TGG | + | chr3.4:75375439-75375458 | MS.gene074416:CDS | 40.0% | |
| GGGAGACCTATAAGATGTAA+AGG | + | chr3.4:75373584-75373603 | MS.gene074416:CDS | 40.0% | |
| TCATCACAGAGATGACTGAT+GGG | + | chr3.4:75375703-75375722 | MS.gene074416:CDS | 40.0% | |
| TCCCATTCAAAGTTTCTCCT+TGG | + | chr3.4:75374422-75374441 | MS.gene074416:CDS | 40.0% | |
| TCTAAGTTGTGGTATAGGAG+CGG | + | chr3.4:75374597-75374616 | MS.gene074416:CDS | 40.0% | |
| TGCCTTCTAAGTTGTGGTAT+AGG | + | chr3.4:75374592-75374611 | MS.gene074416:CDS | 40.0% | |
| TTCTTGGAAAAAAGCCAGGA+GGG | - | chr3.4:75373984-75374003 | None:intergenic | 40.0% | |
| TTTGTTTCCTAGGTTGCTGA+GGG | + | chr3.4:75375095-75375114 | MS.gene074416:intron | 40.0% | |
| ! | AAAAACACAGAGGTGTGCTT+TGG | - | chr3.4:75373869-75373888 | None:intergenic | 40.0% |
| ! | AATAGGGTTGTGGAAAGTGT+AGG | + | chr3.4:75374289-75374308 | MS.gene074416:intron | 40.0% |
| ! | ATAGGGTTGTGGAAAGTGTA+GGG | + | chr3.4:75374290-75374309 | MS.gene074416:intron | 40.0% |
| ! | TTGCTTTGAGTGTGTTGGTA+TGG | + | chr3.4:75375737-75375756 | MS.gene074416:CDS | 40.0% |
| !! | GGGTCTACAGTAGCTATTTT+TGG | + | chr3.4:75374820-75374839 | MS.gene074416:CDS | 40.0% |
| !! | TCTCAATCGGTTTGTTTCCT+AGG | + | chr3.4:75375085-75375104 | MS.gene074416:intron | 40.0% |
| !!! | TCTCGCTTTTTCTGACATGA+AGG | + | chr3.4:75373816-75373835 | MS.gene074416:CDS | 40.0% |
| AAACTCACCCAATTGCCTCA+TGG | - | chr3.4:75374014-75374033 | None:intergenic | 45.0% | |
| AAGTTTCAGCGAGTACACTG+TGG | + | chr3.4:75374516-75374535 | MS.gene074416:CDS | 45.0% | |
| ACCAGATTCACAGACCTGAA+AGG | + | chr3.4:75374463-75374482 | MS.gene074416:CDS | 45.0% | |
| ATCACAGAGATGACTGATGG+GGG | + | chr3.4:75375705-75375724 | MS.gene074416:CDS | 45.0% | |
| ATCCGAACTTCACATGGCAT+TGG | - | chr3.4:75373763-75373782 | None:intergenic | 45.0% | |
| CACCAATGCCATGTGAAGTT+CGG | + | chr3.4:75373758-75373777 | MS.gene074416:CDS | 45.0% | |
| CAGAAAAAGCGAGATCGATG+TGG | - | chr3.4:75373810-75373829 | None:intergenic | 45.0% | |
| CATCACAGAGATGACTGATG+GGG | + | chr3.4:75375704-75375723 | MS.gene074416:CDS | 45.0% | |
| CTAAGTTGTGGTATAGGAGC+GGG | + | chr3.4:75374598-75374617 | MS.gene074416:CDS | 45.0% | |
| CTTAGTTGCTCCACAAAGTC+TGG | - | chr3.4:75375123-75375142 | None:intergenic | 45.0% | |
| GATGCTAAGCTAACACCTCA+TGG | - | chr3.4:75374939-75374958 | None:intergenic | 45.0% | |
| GGTGATTGAAGAGATCATGG+TGG | + | chr3.4:75373732-75373751 | MS.gene074416:CDS | 45.0% | |
| GTCATCACAGAGATGACTGA+TGG | + | chr3.4:75375702-75375721 | MS.gene074416:CDS | 45.0% | |
| GTTTGTTTCCTAGGTTGCTG+AGG | + | chr3.4:75375094-75375113 | MS.gene074416:intron | 45.0% | |
| TCTGAATTTGTCTGCTGAGC+AGG | + | chr3.4:75375680-75375699 | MS.gene074416:intron | 45.0% | |
| TTCTCATGTCTAGGCATCCA+AGG | - | chr3.4:75374442-75374461 | None:intergenic | 45.0% | |
| ! | TCCTTTCAGGTCTGTGAATC+TGG | - | chr3.4:75374467-75374486 | None:intergenic | 45.0% |
| !!! | AATGTTTTGAAGGACCCTCC+TGG | + | chr3.4:75373967-75373986 | MS.gene074416:intron | 45.0% |
| ACCCAGAAATTCCTCCCAAC+GGG | + | chr3.4:75374566-75374585 | MS.gene074416:CDS | 50.0% | |
| ATCTTTCAGGAGGCTAGACC+TGG | - | chr3.4:75375489-75375508 | None:intergenic | 50.0% | |
| ATGCGGATCCGAACTTCACA+TGG | - | chr3.4:75373769-75373788 | None:intergenic | 50.0% | |
| ATTCTGGGCCATGAGGCAAT+TGG | + | chr3.4:75374003-75374022 | MS.gene074416:CDS | 50.0% | |
| CGCGTATGCTTCTTGCAGAA+AGG | + | chr3.4:75375776-75375795 | MS.gene074416:CDS | 50.0% | |
| CTAGTATCAACCTGTGACGC+AGG | - | chr3.4:75375237-75375256 | None:intergenic | 50.0% | |
| GACCCAGAAATTCCTCCCAA+CGG | + | chr3.4:75374565-75374584 | MS.gene074416:CDS | 50.0% | |
| TATCAACCTGTGACGCAGGA+GGG | - | chr3.4:75375233-75375252 | None:intergenic | 50.0% | |
| TCCAAGAATTCTGGGCCATG+AGG | + | chr3.4:75373996-75374015 | MS.gene074416:CDS | 50.0% | |
| TCTGTACACTCCCCACAATC+TGG | - | chr3.4:75374367-75374386 | None:intergenic | 50.0% | |
| TTCTGGGCCATGAGGCAATT+GGG | + | chr3.4:75374004-75374023 | MS.gene074416:CDS | 50.0% | |
| ! | CGAACTTCACATGGCATTGG+TGG | - | chr3.4:75373760-75373779 | None:intergenic | 50.0% |
| ! | GGTTGTGGAAAGTGTAGGGA+AGG | + | chr3.4:75374294-75374313 | MS.gene074416:CDS | 50.0% |
| ! | GTGTGTTGGTATGGCGTCAT+TGG | + | chr3.4:75375746-75375765 | MS.gene074416:CDS | 50.0% |
| ! | TGCTCCCACATTTTCCAGCA+TGG | - | chr3.4:75375456-75375475 | None:intergenic | 50.0% |
| AAGAAGACCTGGTGAGCCAC+TGG | + | chr3.4:75373711-75373730 | MS.gene074416:CDS | 55.0% | |
| CCCAGAAATTCCTCCCAACG+GGG | + | chr3.4:75374567-75374586 | MS.gene074416:CDS | 55.0% | |
| CCCCGTTGGGAGGAATTTCT+GGG | - | chr3.4:75374570-75374589 | None:intergenic | 55.0% | |
| GCAGCACCTACCCCTACAAA+TGG | - | chr3.4:75374775-75374794 | None:intergenic | 55.0% | |
| GCCTCATGGCCCAGAATTCT+TGG | - | chr3.4:75374000-75374019 | None:intergenic | 55.0% | |
| GTATCAACCTGTGACGCAGG+AGG | - | chr3.4:75375234-75375253 | None:intergenic | 55.0% | |
| TCAATCACCAGTGGCTCACC+AGG | - | chr3.4:75373721-75373740 | None:intergenic | 55.0% | |
| TGCTTGGAGAACAGCAGGTG+TGG | + | chr3.4:75374792-75374811 | MS.gene074416:CDS | 55.0% | |
| !! | CACAGAGGTGTGCTTTGGAG+AGG | - | chr3.4:75373864-75373883 | None:intergenic | 55.0% |
| !! | TTGTAGGGGTAGGTGCTGCT+TGG | + | chr3.4:75374776-75374795 | MS.gene074416:intron | 55.0% |
| AGAACAGCAGGTGTGGAGCC+AGG | + | chr3.4:75374799-75374818 | MS.gene074416:CDS | 60.0% | |
| GAACAGCAGGTGTGGAGCCA+GGG | + | chr3.4:75374800-75374819 | MS.gene074416:CDS | 60.0% | |
| GCCCCGTTGGGAGGAATTTC+TGG | - | chr3.4:75374571-75374590 | None:intergenic | 60.0% | |
| GCGGCAGTTGCAAGAAGACC+TGG | + | chr3.4:75373700-75373719 | MS.gene074416:intron | 60.0% | |
| GCTGAGGGAGCCAGACTTTG+TGG | + | chr3.4:75375110-75375129 | MS.gene074416:CDS | 60.0% | |
| GGGGCGTGCCTTCTAAGTTG+TGG | + | chr3.4:75374586-75374605 | MS.gene074416:CDS | 60.0% | |
| TGGGAGCAAACCTGTGAGCC+AGG | + | chr3.4:75375468-75375487 | MS.gene074416:CDS | 60.0% | |
| ! | ACTTAGAAGGCACGCCCCGT+TGG | - | chr3.4:75374584-75374603 | None:intergenic | 60.0% |
| ! | CTTAGAAGGCACGCCCCGTT+GGG | - | chr3.4:75374583-75374602 | None:intergenic | 60.0% |
| ! | TCTGGCTCCCTCAGCAACCT+AGG | - | chr3.4:75375105-75375124 | None:intergenic | 60.0% |
| !! | GGTGCTGCTTGGAGAACAGC+AGG | + | chr3.4:75374787-75374806 | MS.gene074416:CDS | 60.0% |
| CAACCTGTGACGCAGGAGGG+TGG | - | chr3.4:75375230-75375249 | None:intergenic | 65.0% | |
| GGAGGCTAGACCTGGCTCAC+AGG | - | chr3.4:75375481-75375500 | None:intergenic | 65.0% | |
| TAGCCACCCTCCTGCGTCAC+AGG | + | chr3.4:75375224-75375243 | MS.gene074416:intron | 65.0% | |
| ! | AGAAGGCACGCCCCGTTGGG+AGG | - | chr3.4:75374580-75374599 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 75373554 | 75375923 | 75373554 | ID=MS.gene074416 |
| chr3.4 | mRNA | 75373554 | 75375923 | 75373554 | ID=MS.gene074416.t1;Parent=MS.gene074416 |
| chr3.4 | exon | 75373554 | 75373605 | 75373554 | ID=MS.gene074416.t1.exon1;Parent=MS.gene074416.t1 |
| chr3.4 | CDS | 75373554 | 75373605 | 75373554 | ID=cds.MS.gene074416.t1;Parent=MS.gene074416.t1 |
| chr3.4 | exon | 75373701 | 75373837 | 75373701 | ID=MS.gene074416.t1.exon2;Parent=MS.gene074416.t1 |
| chr3.4 | CDS | 75373701 | 75373837 | 75373701 | ID=cds.MS.gene074416.t1;Parent=MS.gene074416.t1 |
| chr3.4 | exon | 75373979 | 75374025 | 75373979 | ID=MS.gene074416.t1.exon3;Parent=MS.gene074416.t1 |
| chr3.4 | CDS | 75373979 | 75374025 | 75373979 | ID=cds.MS.gene074416.t1;Parent=MS.gene074416.t1 |
| chr3.4 | exon | 75374294 | 75374619 | 75374294 | ID=MS.gene074416.t1.exon4;Parent=MS.gene074416.t1 |
| chr3.4 | CDS | 75374294 | 75374619 | 75374294 | ID=cds.MS.gene074416.t1;Parent=MS.gene074416.t1 |
| chr3.4 | exon | 75374782 | 75374864 | 75374782 | ID=MS.gene074416.t1.exon5;Parent=MS.gene074416.t1 |
| chr3.4 | CDS | 75374782 | 75374864 | 75374782 | ID=cds.MS.gene074416.t1;Parent=MS.gene074416.t1 |
| chr3.4 | exon | 75375107 | 75375182 | 75375107 | ID=MS.gene074416.t1.exon6;Parent=MS.gene074416.t1 |
| chr3.4 | CDS | 75375107 | 75375182 | 75375107 | ID=cds.MS.gene074416.t1;Parent=MS.gene074416.t1 |
| chr3.4 | exon | 75375425 | 75375489 | 75375425 | ID=MS.gene074416.t1.exon7;Parent=MS.gene074416.t1 |
| chr3.4 | CDS | 75375425 | 75375489 | 75375425 | ID=cds.MS.gene074416.t1;Parent=MS.gene074416.t1 |
| chr3.4 | exon | 75375702 | 75375797 | 75375702 | ID=MS.gene074416.t1.exon8;Parent=MS.gene074416.t1 |
| chr3.4 | CDS | 75375702 | 75375797 | 75375702 | ID=cds.MS.gene074416.t1;Parent=MS.gene074416.t1 |
| chr3.4 | exon | 75375876 | 75375923 | 75375876 | ID=MS.gene074416.t1.exon9;Parent=MS.gene074416.t1 |
| chr3.4 | CDS | 75375876 | 75375923 | 75375876 | ID=cds.MS.gene074416.t1;Parent=MS.gene074416.t1 |
| Gene Sequence |
| Protein sequence |
