Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07473.t1 | XP_013468835.1 | 100 | 203 | 0 | 0 | 1 | 203 | 46 | 248 | 1.40E-109 | 405.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07473.t1 | Q1G3L1 | 73.8 | 195 | 49 | 2 | 5 | 198 | 76 | 269 | 9.3e-75 | 281.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07473.t1 | A0A072VM55 | 100.0 | 203 | 0 | 0 | 1 | 203 | 46 | 248 | 9.8e-110 | 405.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058027 | MS.gene07473 | 0.802688 | 4.98E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 58 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTGACCATAACCTGTAAT+TGG | 0.168759 | 1.3:-55292941 | None:intergenic |
| TCTCATCTAGACTACTTGTT+TGG | 0.252981 | 1.3:-55293507 | None:intergenic |
| TACAGTCTGGTCATTCTTGC+AGG | 0.260868 | 1.3:+55291763 | MS.gene07473:CDS |
| TACAGGTTAATTTCTTTATC+CGG | 0.292822 | 1.3:+55293343 | MS.gene07473:intron |
| CTGGTCATTCTTGCAGGGCT+TGG | 0.297184 | 1.3:+55291769 | MS.gene07473:CDS |
| TATTAAACTCTTTACTCTTT+GGG | 0.301931 | 1.3:-55291841 | None:intergenic |
| CTTGGAGTTGCGGCTGCTGC+TGG | 0.310884 | 1.3:+55291787 | MS.gene07473:CDS |
| CTCATCTAGACTACTTGTTT+GGG | 0.313277 | 1.3:-55293506 | None:intergenic |
| TTCTCCAGCACAACTAATTC+TGG | 0.313380 | 1.3:+55293461 | MS.gene07473:CDS |
| AAAGAATTCCCAACAGGGTT+TGG | 0.335930 | 1.3:+55292987 | MS.gene07473:CDS |
| GGATCCCCAATTACAGGTTA+TGG | 0.342971 | 1.3:+55292935 | MS.gene07473:CDS |
| CACAAATGTTACCGGCTTCT+CGG | 0.372686 | 1.3:-55291728 | None:intergenic |
| CGAGAAGCCGGTAACATTTG+TGG | 0.402449 | 1.3:+55291729 | MS.gene07473:CDS |
| AGGATTGGATCCCCAATTAC+AGG | 0.409135 | 1.3:+55292929 | MS.gene07473:CDS |
| GTTGGAATTGCAGAAAACTA+TGG | 0.412465 | 1.3:+55290512 | MS.gene07473:CDS |
| CCTGACCATAACCTGTAATT+GGG | 0.414561 | 1.3:-55292940 | None:intergenic |
| CTCGTCAAAGAATTCCCAAC+AGG | 0.416592 | 1.3:+55292981 | MS.gene07473:CDS |
| TCATCGGTCCAAACCCTGTT+GGG | 0.437968 | 1.3:-55292995 | None:intergenic |
| ACAGGTTAATTTCTTTATCC+GGG | 0.440134 | 1.3:+55293344 | MS.gene07473:intron |
| TTCCAGGTCAGAGGGAGGAT+TGG | 0.449707 | 1.3:+55292914 | MS.gene07473:intron |
| GACTCCAGAATTAGTTGTGC+TGG | 0.450239 | 1.3:-55293465 | None:intergenic |
| TACTTGTTTGGGTTGTAAGA+AGG | 0.465698 | 1.3:-55293495 | None:intergenic |
| ACAAATGTTACCGGCTTCTC+GGG | 0.475865 | 1.3:-55291727 | None:intergenic |
| AAGAATTCAAGATGATGGTC+AGG | 0.477460 | 1.3:+55292145 | MS.gene07473:CDS |
| CCCAATTACAGGTTATGGTC+AGG | 0.479884 | 1.3:+55292940 | MS.gene07473:CDS |
| CTCATCGGTCCAAACCCTGT+TGG | 0.484272 | 1.3:-55292996 | None:intergenic |
| CTCAAAAGAATTCAAGATGA+TGG | 0.488801 | 1.3:+55292140 | MS.gene07473:CDS |
| ACTTGTTTGGGTTGTAAGAA+GGG | 0.491275 | 1.3:-55293494 | None:intergenic |
| GCCGGTAACATTTGTGGAGG+GGG | 0.515141 | 1.3:+55291735 | MS.gene07473:CDS |
| AGACATAAACCTTGTCAAAG+AGG | 0.517648 | 1.3:-55290540 | None:intergenic |
| ATATAATATTCCCGAGAAGC+CGG | 0.533779 | 1.3:+55291717 | MS.gene07473:CDS |
| TCTTGCAGGGCTTGGAGTTG+CGG | 0.534096 | 1.3:+55291777 | MS.gene07473:CDS |
| ACAGTCTGGTCATTCTTGCA+GGG | 0.534491 | 1.3:+55291764 | MS.gene07473:CDS |
| TCAAAGGAGCTGACGGTGAG+TGG | 0.548735 | 1.3:+55293403 | MS.gene07473:CDS |
| TTCTCGGGAATATTATATGT+TGG | 0.548981 | 1.3:-55291712 | None:intergenic |
| TATTGGATTTCCAGGTCAGA+GGG | 0.556067 | 1.3:+55292906 | MS.gene07473:intron |
| TCAAATGCATCGTCTGAGCA+AGG | 0.560458 | 1.3:+55290563 | MS.gene07473:CDS |
| AGAATTAGTTGTGCTGGAGA+AGG | 0.564476 | 1.3:-55293459 | None:intergenic |
| CAGGGTTTGGACCGATGAGG+AGG | 0.578696 | 1.3:+55293000 | MS.gene07473:CDS |
| CAAATGCATCGTCTGAGCAA+GGG | 0.589240 | 1.3:+55290564 | MS.gene07473:CDS |
| GTATTGGATTTCCAGGTCAG+AGG | 0.591215 | 1.3:+55292905 | MS.gene07473:intron |
| ATGTTCAACACCCTCCTCAT+CGG | 0.592436 | 1.3:-55293011 | None:intergenic |
| AGCCGGTAACATTTGTGGAG+GGG | 0.592583 | 1.3:+55291734 | MS.gene07473:CDS |
| CAGGTTAATTTCTTTATCCG+GGG | 0.595507 | 1.3:+55293345 | MS.gene07473:intron |
| AAGCCGGTAACATTTGTGGA+GGG | 0.611693 | 1.3:+55291733 | MS.gene07473:CDS |
| TATGTTGGAGCATCATCGAA+TGG | 0.615482 | 1.3:-55291697 | None:intergenic |
| GTATTCGCTGAGATGTTCAA+AGG | 0.627485 | 1.3:+55293387 | MS.gene07473:CDS |
| CTGACCATAACCTGTAATTG+GGG | 0.635184 | 1.3:-55292939 | None:intergenic |
| GAGATGTTCAAAGGAGCTGA+CGG | 0.637033 | 1.3:+55293396 | MS.gene07473:CDS |
| ATGGATCAACCTCTTTGACA+AGG | 0.641918 | 1.3:+55290531 | MS.gene07473:CDS |
| GAAGCCGGTAACATTTGTGG+AGG | 0.643600 | 1.3:+55291732 | MS.gene07473:CDS |
| TGGATTTCCAGGTCAGAGGG+AGG | 0.644772 | 1.3:+55292909 | MS.gene07473:intron |
| AGGGTTTGGACCGATGAGGA+GGG | 0.654864 | 1.3:+55293001 | MS.gene07473:CDS |
| CAACAGGGTTTGGACCGATG+AGG | 0.658274 | 1.3:+55292997 | MS.gene07473:CDS |
| GGAGGGTGTTGAACATGTCG+AGG | 0.659911 | 1.3:+55293018 | MS.gene07473:CDS |
| TCGTCAAAGAATTCCCAACA+GGG | 0.663020 | 1.3:+55292982 | MS.gene07473:CDS |
| TAGGTACAAGATTTATAACA+AGG | 0.670702 | 1.3:+55292115 | MS.gene07473:intron |
| TGCAAGAATGACCAGACTGT+AGG | 0.695526 | 1.3:-55291761 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTTAAATCTTCTTTA+TGG | + | chr1.3:55293249-55293268 | MS.gene07473:intron | 10.0% |
| !!! | TCATTTATTGATTTTAATTA+AGG | + | chr1.3:55290661-55290680 | MS.gene07473:intron | 10.0% |
| !! | ATATATAATATAAAATCACC+AGG | + | chr1.3:55292496-55292515 | MS.gene07473:intron | 15.0% |
| !! | TATTATCAAAATTCAAACAT+AGG | - | chr1.3:55292414-55292433 | None:intergenic | 15.0% |
| !! | TTAATTAAGGAATAATGTTT+AGG | + | chr1.3:55290674-55290693 | MS.gene07473:intron | 15.0% |
| !!! | ACATTATTTGTATTATTTCT+CGG | + | chr1.3:55293220-55293239 | MS.gene07473:intron | 15.0% |
| !!! | AGTAGTTTTTTTTTTTTAGA+GGG | + | chr1.3:55291113-55291132 | MS.gene07473:intron | 15.0% |
| !!! | ATGTTTGAATTTTGATAATA+AGG | + | chr1.3:55292414-55292433 | MS.gene07473:intron | 15.0% |
| !!! | GTAAATTGTATGTTAATTTT+TGG | + | chr1.3:55292833-55292852 | MS.gene07473:intron | 15.0% |
| !!! | TATATTATCATTTTTCATTG+AGG | - | chr1.3:55292481-55292500 | None:intergenic | 15.0% |
| !!! | TTACAAATCATTGTTTTATT+TGG | - | chr1.3:55292817-55292836 | None:intergenic | 15.0% |
| !!! | TTTTTTTGCTTAAATAATGA+AGG | + | chr1.3:55291083-55291102 | MS.gene07473:intron | 15.0% |
| !! | AAAAGAGTTAAAAAATGTTG+AGG | + | chr1.3:55291672-55291691 | MS.gene07473:CDS | 20.0% |
| !! | AAATGAGTAATGCATATATT+AGG | - | chr1.3:55290647-55290666 | None:intergenic | 20.0% |
| !! | AACAATCAGAACAAAATAAA+TGG | - | chr1.3:55292083-55292102 | None:intergenic | 20.0% |
| !! | AACTTCATTAAAAATTATGG+TGG | - | chr1.3:55290844-55290863 | None:intergenic | 20.0% |
| !! | AATGAGTAATGCATATATTA+GGG | - | chr1.3:55290646-55290665 | None:intergenic | 20.0% |
| !! | AATTTGACATAAAAACTGTT+AGG | - | chr1.3:55292391-55292410 | None:intergenic | 20.0% |
| !! | ACCAACTTCATTAAAAATTA+TGG | - | chr1.3:55290847-55290866 | None:intergenic | 20.0% |
| !! | ATACAAAGACAACTAAAATT+GGG | + | chr1.3:55292341-55292360 | MS.gene07473:intron | 20.0% |
| !! | ATATTAAACTCTTTACTCTT+TGG | - | chr1.3:55291845-55291864 | None:intergenic | 20.0% |
| !! | TATACAAAGACAACTAAAAT+TGG | + | chr1.3:55292340-55292359 | MS.gene07473:intron | 20.0% |
| !! | TATTAAACTCTTTACTCTTT+GGG | - | chr1.3:55291844-55291863 | None:intergenic | 20.0% |
| !!! | AATATTTAAGTTCCTCTAAA+TGG | - | chr1.3:55292229-55292248 | None:intergenic | 20.0% |
| !!! | AATTTTTTGGTAGAACAAAA+AGG | - | chr1.3:55292779-55292798 | None:intergenic | 20.0% |
| !!! | ACCATAATTTTTAATGAAGT+TGG | + | chr1.3:55290843-55290862 | MS.gene07473:intron | 20.0% |
| !!! | CATATTTTCTAGTATTGATT+GGG | - | chr1.3:55291526-55291545 | None:intergenic | 20.0% |
| !!! | GAGTAGTTTTTTTTTTTTAG+AGG | + | chr1.3:55291112-55291131 | MS.gene07473:intron | 20.0% |
| !!! | TCATATTTTCTAGTATTGAT+TGG | - | chr1.3:55291527-55291546 | None:intergenic | 20.0% |
| !!! | TTTTAAATCTTCTTTATGGT+GGG | + | chr1.3:55293253-55293272 | MS.gene07473:intron | 20.0% |
| !!! | TTTTTAAATCTTCTTTATGG+TGG | + | chr1.3:55293252-55293271 | MS.gene07473:intron | 20.0% |
| ! | AAAACACTCTAATTACCAAT+TGG | + | chr1.3:55290897-55290916 | MS.gene07473:intron | 25.0% |
| ! | AAACACTCTAATTACCAATT+GGG | + | chr1.3:55290898-55290917 | MS.gene07473:intron | 25.0% |
| ! | AGATAACTATGAAAAAGGAA+AGG | + | chr1.3:55293156-55293175 | MS.gene07473:intron | 25.0% |
| ! | AGTAAAGAGTTTAATATCCT+TGG | + | chr1.3:55291848-55291867 | MS.gene07473:intron | 25.0% |
| ! | TAAACACTCTAATTACCAAT+TGG | + | chr1.3:55290950-55290969 | MS.gene07473:intron | 25.0% |
| ! | TACAGGTTAATTTCTTTATC+CGG | + | chr1.3:55293343-55293362 | MS.gene07473:intron | 25.0% |
| ! | TAGGTACAAGATTTATAACA+AGG | + | chr1.3:55292115-55292134 | MS.gene07473:intron | 25.0% |
| ! | TCAGATAAATAATATGACCA+AGG | - | chr1.3:55291868-55291887 | None:intergenic | 25.0% |
| ! | TCATACAAAGTTATCACATA+TGG | + | chr1.3:55291263-55291282 | MS.gene07473:intron | 25.0% |
| !! | AAGGAATAATGTTTAGGTTT+AGG | + | chr1.3:55290680-55290699 | MS.gene07473:intron | 25.0% |
| !! | TGCAGAAACATACATATTTT+AGG | + | chr1.3:55293071-55293090 | MS.gene07473:intron | 25.0% |
| !!! | CTTATTGATTGTTGAGTTTT+GGG | + | chr1.3:55291936-55291955 | MS.gene07473:intron | 25.0% |
| !!! | TAAATGGAGATGCTTTATTT+TGG | - | chr1.3:55292213-55292232 | None:intergenic | 25.0% |
| !!! | TGTGGAATTTTAAAGTTGTT+AGG | + | chr1.3:55290805-55290824 | MS.gene07473:intron | 25.0% |
| !!! | TTATTTTGGTTTTCTGATTC+AGG | - | chr1.3:55292199-55292218 | None:intergenic | 25.0% |
| AAAAAAAAAAACTACTCCCC+CGG | - | chr1.3:55291109-55291128 | None:intergenic | 30.0% | |
| AACACTCTAATTACCAATTG+GGG | + | chr1.3:55290899-55290918 | MS.gene07473:intron | 30.0% | |
| AACTCAACAATCAATAAGCA+TGG | - | chr1.3:55291934-55291953 | None:intergenic | 30.0% | |
| ACAGGTTAATTTCTTTATCC+GGG | + | chr1.3:55293344-55293363 | MS.gene07473:intron | 30.0% | |
| ACTAAAATTGGGTGATGAAA+TGG | + | chr1.3:55292352-55292371 | MS.gene07473:intron | 30.0% | |
| ACTTAGCACGAATTATAGTT+CGG | - | chr1.3:55291050-55291069 | None:intergenic | 30.0% | |
| ATGTAGAAATGTTAGTAGCA+AGG | + | chr1.3:55291215-55291234 | MS.gene07473:intron | 30.0% | |
| ATTTGCATCCAAGTCATAAA+TGG | - | chr1.3:55291306-55291325 | None:intergenic | 30.0% | |
| CATGTATGTATGTGTGTAAT+AGG | + | chr1.3:55291001-55291020 | MS.gene07473:intron | 30.0% | |
| CCTCTTTCATTTATTGTTCA+GGG | - | chr1.3:55292743-55292762 | None:intergenic | 30.0% | |
| CTCAAAAGAATTCAAGATGA+TGG | + | chr1.3:55292140-55292159 | MS.gene07473:CDS | 30.0% | |
| GATTGTTATAAGCTGATGAT+AGG | + | chr1.3:55292096-55292115 | MS.gene07473:intron | 30.0% | |
| GCTCTCAAATATGTTCATTT+GGG | + | chr1.3:55293319-55293338 | MS.gene07473:intron | 30.0% | |
| GTATATCTTCTTCCTACAAA+TGG | - | chr1.3:55292325-55292344 | None:intergenic | 30.0% | |
| TCACAATGAAATTCACGTAT+AGG | - | chr1.3:55291350-55291369 | None:intergenic | 30.0% | |
| TCCTCTTTCATTTATTGTTC+AGG | - | chr1.3:55292744-55292763 | None:intergenic | 30.0% | |
| TCTGAAAGAAAAATGCTACA+TGG | + | chr1.3:55291883-55291902 | MS.gene07473:intron | 30.0% | |
| TGCTCTCAAATATGTTCATT+TGG | + | chr1.3:55293318-55293337 | MS.gene07473:intron | 30.0% | |
| TGTCTTGATGTGAAATGTAT+TGG | + | chr1.3:55292889-55292908 | MS.gene07473:intron | 30.0% | |
| TTCTCGGGAATATTATATGT+TGG | - | chr1.3:55291715-55291734 | None:intergenic | 30.0% | |
| TTGTTCAGGGTAAAAAACTT+CGG | - | chr1.3:55292730-55292749 | None:intergenic | 30.0% | |
| TTTACTACTACTGGATCAAA+AGG | - | chr1.3:55292529-55292548 | None:intergenic | 30.0% | |
| TTTGCTTAAATAATGAAGGC+CGG | + | chr1.3:55291087-55291106 | MS.gene07473:intron | 30.0% | |
| ! | AAGTGATCTTTTACTACTAC+TGG | - | chr1.3:55292538-55292557 | None:intergenic | 30.0% |
| ! | AATAAAGCATCTCCATTTAG+AGG | + | chr1.3:55292214-55292233 | MS.gene07473:intron | 30.0% |
| ! | AATATGTTCATTTGGGTTAC+AGG | + | chr1.3:55293326-55293345 | MS.gene07473:intron | 30.0% |
| ! | GTTTTACACGGCATTTTATT+TGG | + | chr1.3:55291584-55291603 | MS.gene07473:intron | 30.0% |
| !! | GCTTATTGATTGTTGAGTTT+TGG | + | chr1.3:55291935-55291954 | MS.gene07473:intron | 30.0% |
| !!! | CATTGTTTTATTTGGTGCTT+TGG | - | chr1.3:55292809-55292828 | None:intergenic | 30.0% |
| !!! | TGCTACTTTTACACTGATAA+CGG | - | chr1.3:55292454-55292473 | None:intergenic | 30.0% |
| AAACAGTATTAGCGTGAAAG+TGG | - | chr1.3:55290608-55290627 | None:intergenic | 35.0% | |
| AGACATAAACCTTGTCAAAG+AGG | - | chr1.3:55290543-55290562 | None:intergenic | 35.0% | |
| ATATAATATTCCCGAGAAGC+CGG | + | chr1.3:55291717-55291736 | MS.gene07473:CDS | 35.0% | |
| ATATGCAGTAAGCTAGGTAT+AGG | + | chr1.3:55292645-55292664 | MS.gene07473:intron | 35.0% | |
| ATGAGTTAGCAAGATGTCTA+TGG | - | chr1.3:55291247-55291266 | None:intergenic | 35.0% | |
| CAAATCGAAAATTTCCCACT+TGG | + | chr1.3:55291321-55291340 | MS.gene07473:intron | 35.0% | |
| CAACACAAACTGAAGGATAT+TGG | - | chr1.3:55292265-55292284 | None:intergenic | 35.0% | |
| CAATATCCTTCAGTTTGTGT+TGG | + | chr1.3:55292263-55292282 | MS.gene07473:intron | 35.0% | |
| CAGGTTAATTTCTTTATCCG+GGG | + | chr1.3:55293345-55293364 | MS.gene07473:intron | 35.0% | |
| CCAAAAACACTATTGTAGCA+TGG | - | chr1.3:55291479-55291498 | None:intergenic | 35.0% | |
| CCCTGAACAATAAATGAAAG+AGG | + | chr1.3:55292740-55292759 | MS.gene07473:intron | 35.0% | |
| CTAAGTGTGTTTGACACAAA+TGG | + | chr1.3:55290743-55290762 | MS.gene07473:intron | 35.0% | |
| CTAGCTTACTGCATATTGAA+AGG | - | chr1.3:55292641-55292660 | None:intergenic | 35.0% | |
| CTTTCAATATGCAGTAAGCT+AGG | + | chr1.3:55292639-55292658 | MS.gene07473:intron | 35.0% | |
| GGAGGAGATAACTATGAAAA+AGG | + | chr1.3:55293151-55293170 | MS.gene07473:intron | 35.0% | |
| GTGAAATGTATTGGATTTCC+AGG | + | chr1.3:55292898-55292917 | MS.gene07473:intron | 35.0% | |
| GTTGGAATTGCAGAAAACTA+TGG | + | chr1.3:55290512-55290531 | MS.gene07473:CDS | 35.0% | |
| GTTGGATATGAAATGAAGCT+GGG | + | chr1.3:55292285-55292304 | MS.gene07473:intron | 35.0% | |
| GTTTAGAAGACCTTTCAGAA+AGG | + | chr1.3:55293126-55293145 | MS.gene07473:intron | 35.0% | |
| TATGTCATTGAGTAGGTGAT+TGG | + | chr1.3:55292671-55292690 | MS.gene07473:intron | 35.0% | |
| TCATAAATGGTGTAAGCGTA+AGG | - | chr1.3:55291293-55291312 | None:intergenic | 35.0% | |
| TGTAAAACACAGCCATTCTA+TGG | - | chr1.3:55291572-55291591 | None:intergenic | 35.0% | |
| TTCTTACAACCCAAACAAGT+AGG | + | chr1.3:55293497-55293516 | MS.gene07473:CDS | 35.0% | |
| TTGAAAGGATCTTTAACGAC+TGG | - | chr1.3:55292626-55292645 | None:intergenic | 35.0% | |
| TTGCTTAAATAATGAAGGCC+GGG | + | chr1.3:55291088-55291107 | MS.gene07473:intron | 35.0% | |
| ! | AAGAATTCAAGATGATGGTC+AGG | + | chr1.3:55292145-55292164 | MS.gene07473:CDS | 35.0% |
| ! | AATACTTTTCCATGTCCATG+GGG | - | chr1.3:55293372-55293391 | None:intergenic | 35.0% |
| ! | CCATGCTACAATAGTGTTTT+TGG | + | chr1.3:55291476-55291495 | MS.gene07473:intron | 35.0% |
| ! | GAATACTTTTCCATGTCCAT+GGG | - | chr1.3:55293373-55293392 | None:intergenic | 35.0% |
| ! | TAGAATGGCTGTGTTTTACA+CGG | + | chr1.3:55291572-55291591 | MS.gene07473:intron | 35.0% |
| ! | TCTATTCTCTACCCATGTTT+TGG | + | chr1.3:55291446-55291465 | MS.gene07473:intron | 35.0% |
| ! | TGCTGGATATTCTGTTTTCA+AGG | + | chr1.3:55291804-55291823 | MS.gene07473:CDS | 35.0% |
| ! | TTGGCGTTGTCATTTCTTAA+AGG | + | chr1.3:55291495-55291514 | MS.gene07473:intron | 35.0% |
| !! | ACTTGTTTGGGTTGTAAGAA+GGG | - | chr1.3:55293497-55293516 | None:intergenic | 35.0% |
| !! | TACTTGTTTGGGTTGTAAGA+AGG | - | chr1.3:55293498-55293517 | None:intergenic | 35.0% |
| !!! | ATTGATTGTTGAGTTTTGGG+TGG | + | chr1.3:55291939-55291958 | MS.gene07473:intron | 35.0% |
| AAACCTTATCCCACTAAGTG+GGG | - | chr1.3:55291168-55291187 | None:intergenic | 40.0% | |
| AAAGAATTCCCAACAGGGTT+TGG | + | chr1.3:55292987-55293006 | MS.gene07473:CDS | 40.0% | |
| ACTTCAATATGCAGTCAGCT+CGG | + | chr1.3:55292554-55292573 | MS.gene07473:intron | 40.0% | |
| AGAAGACCTTTCAGAAAGGA+GGG | + | chr1.3:55293130-55293149 | MS.gene07473:intron | 40.0% | |
| AGAATTAGTTGTGCTGGAGA+AGG | - | chr1.3:55293462-55293481 | None:intergenic | 40.0% | |
| ATCAGAATTGAGCTAGACTC+TGG | - | chr1.3:55291998-55292017 | None:intergenic | 40.0% | |
| ATCCAACCAACACAAACTGA+AGG | - | chr1.3:55292272-55292291 | None:intergenic | 40.0% | |
| ATGGATCAACCTCTTTGACA+AGG | + | chr1.3:55290531-55290550 | MS.gene07473:CDS | 40.0% | |
| ATTGAGTAGGTGATTGGAGT+TGG | + | chr1.3:55292677-55292696 | MS.gene07473:intron | 40.0% | |
| CAAACCTTATCCCACTAAGT+GGG | - | chr1.3:55291169-55291188 | None:intergenic | 40.0% | |
| CCTGACCATAACCTGTAATT+GGG | - | chr1.3:55292943-55292962 | None:intergenic | 40.0% | |
| CGCTTACACCATTTATGACT+TGG | + | chr1.3:55291295-55291314 | MS.gene07473:intron | 40.0% | |
| CTGACCATAACCTGTAATTG+GGG | - | chr1.3:55292942-55292961 | None:intergenic | 40.0% | |
| GCAAGGGAAAAACACTGAAA+AGG | + | chr1.3:55290580-55290599 | MS.gene07473:CDS | 40.0% | |
| GGATCAAAAGGAAGAAATCC+TGG | - | chr1.3:55292517-55292536 | None:intergenic | 40.0% | |
| GGTTGGATATGAAATGAAGC+TGG | + | chr1.3:55292284-55292303 | MS.gene07473:intron | 40.0% | |
| GTATTCGCTGAGATGTTCAA+AGG | + | chr1.3:55293387-55293406 | MS.gene07473:CDS | 40.0% | |
| TACTTGATGTTTAGCAGCTG+TGG | + | chr1.3:55293279-55293298 | MS.gene07473:intron | 40.0% | |
| TAGAAGACCTTTCAGAAAGG+AGG | + | chr1.3:55293129-55293148 | MS.gene07473:intron | 40.0% | |
| TAGGCGTTATGTCATTGAGT+AGG | + | chr1.3:55292664-55292683 | MS.gene07473:intron | 40.0% | |
| TATGTCATTGAGTAGGTGGT+TGG | + | chr1.3:55292586-55292605 | MS.gene07473:intron | 40.0% | |
| TATTGGATTTCCAGGTCAGA+GGG | + | chr1.3:55292906-55292925 | MS.gene07473:intron | 40.0% | |
| TCACGTATAGGTTACCAAGT+GGG | - | chr1.3:55291338-55291357 | None:intergenic | 40.0% | |
| TCCTGACCATAACCTGTAAT+TGG | - | chr1.3:55292944-55292963 | None:intergenic | 40.0% | |
| TCGTCAAAGAATTCCCAACA+GGG | + | chr1.3:55292982-55293001 | MS.gene07473:CDS | 40.0% | |
| TGAAAGGTCTTCTAAACCCA+GGG | - | chr1.3:55293123-55293142 | None:intergenic | 40.0% | |
| TGCTTAAATAATGAAGGCCG+GGG | + | chr1.3:55291089-55291108 | MS.gene07473:intron | 40.0% | |
| TGGTTCTTGGAGAGCTTAAT+TGG | + | chr1.3:55293191-55293210 | MS.gene07473:intron | 40.0% | |
| TTCACGTATAGGTTACCAAG+TGG | - | chr1.3:55291339-55291358 | None:intergenic | 40.0% | |
| TTCTCCAGCACAACTAATTC+TGG | + | chr1.3:55293461-55293480 | MS.gene07473:CDS | 40.0% | |
| TTCTGCAGATCACCATTTGT+AGG | + | chr1.3:55292310-55292329 | MS.gene07473:intron | 40.0% | |
| TTGAGTAGGTGATTGGAGTT+GGG | + | chr1.3:55292678-55292697 | MS.gene07473:intron | 40.0% | |
| ! | ATACTTTTCCATGTCCATGG+GGG | - | chr1.3:55293371-55293390 | None:intergenic | 40.0% |
| ! | ATCCTTCAGTTTGTGTTGGT+TGG | + | chr1.3:55292267-55292286 | MS.gene07473:intron | 40.0% |
| ! | CGAATACTTTTCCATGTCCA+TGG | - | chr1.3:55293374-55293393 | None:intergenic | 40.0% |
| ! | TAGGTGCTATGTCATTGAGT+AGG | + | chr1.3:55292579-55292598 | MS.gene07473:intron | 40.0% |
| ! | TATGTTGGAGCATCATCGAA+TGG | - | chr1.3:55291700-55291719 | None:intergenic | 40.0% |
| !!! | AGTTTTGGGTGGATCCTTAT+TGG | + | chr1.3:55291950-55291969 | MS.gene07473:intron | 40.0% |
| !!! | CTTTGGTGCGTGCAATTTTT+TGG | - | chr1.3:55292792-55292811 | None:intergenic | 40.0% |
| AAGCCGGTAACATTTGTGGA+GGG | + | chr1.3:55291733-55291752 | MS.gene07473:CDS | 45.0% | |
| ACAGTCTGGTCATTCTTGCA+GGG | + | chr1.3:55291764-55291783 | MS.gene07473:CDS | 45.0% | |
| AGGATTGGATCCCCAATTAC+AGG | + | chr1.3:55292929-55292948 | MS.gene07473:CDS | 45.0% | |
| ATATGCAGTCAGCTCGGTAT+AGG | + | chr1.3:55292560-55292579 | MS.gene07473:intron | 45.0% | |
| ATGGAGCCTCACCAAAACAT+GGG | - | chr1.3:55291460-55291479 | None:intergenic | 45.0% | |
| ATGTTCAACACCCTCCTCAT+CGG | - | chr1.3:55293014-55293033 | None:intergenic | 45.0% | |
| ATTGAGTAGGTGGTTGGAGT+TGG | + | chr1.3:55292592-55292611 | MS.gene07473:intron | 45.0% | |
| CAAATGCATCGTCTGAGCAA+GGG | + | chr1.3:55290564-55290583 | MS.gene07473:CDS | 45.0% | |
| CCAAACCTTATCCCACTAAG+TGG | - | chr1.3:55291170-55291189 | None:intergenic | 45.0% | |
| CCACTTAGTGGGATAAGGTT+TGG | + | chr1.3:55291167-55291186 | MS.gene07473:intron | 45.0% | |
| CCCAATTACAGGTTATGGTC+AGG | + | chr1.3:55292940-55292959 | MS.gene07473:CDS | 45.0% | |
| CTCGTCAAAGAATTCCCAAC+AGG | + | chr1.3:55292981-55293000 | MS.gene07473:CDS | 45.0% | |
| CTGAAAGGTCTTCTAAACCC+AGG | - | chr1.3:55293124-55293143 | None:intergenic | 45.0% | |
| CTTCTAAACCCAGGGATGAT+GGG | - | chr1.3:55293115-55293134 | None:intergenic | 45.0% | |
| GAAAAAGGAAAGGAGAGACG+AGG | + | chr1.3:55293166-55293185 | MS.gene07473:intron | 45.0% | |
| GACTCCAGAATTAGTTGTGC+TGG | - | chr1.3:55293468-55293487 | None:intergenic | 45.0% | |
| GAGATGTTCAAAGGAGCTGA+CGG | + | chr1.3:55293396-55293415 | MS.gene07473:CDS | 45.0% | |
| GCTTAAATAATGAAGGCCGG+GGG | + | chr1.3:55291090-55291109 | MS.gene07473:intron | 45.0% | |
| GGATCCCCAATTACAGGTTA+TGG | + | chr1.3:55292935-55292954 | MS.gene07473:CDS | 45.0% | |
| GTATTGGATTTCCAGGTCAG+AGG | + | chr1.3:55292905-55292924 | MS.gene07473:intron | 45.0% | |
| GTGCTATGTCATTGAGTAGG+TGG | + | chr1.3:55292582-55292601 | MS.gene07473:intron | 45.0% | |
| TACAGTCTGGTCATTCTTGC+AGG | + | chr1.3:55291763-55291782 | MS.gene07473:CDS | 45.0% | |
| TCAAATGCATCGTCTGAGCA+AGG | + | chr1.3:55290563-55290582 | MS.gene07473:CDS | 45.0% | |
| TCTTCTAAACCCAGGGATGA+TGG | - | chr1.3:55293116-55293135 | None:intergenic | 45.0% | |
| TGAATAGACCCATCATCCCT+GGG | + | chr1.3:55293104-55293123 | MS.gene07473:intron | 45.0% | |
| TGCAAGAATGACCAGACTGT+AGG | - | chr1.3:55291764-55291783 | None:intergenic | 45.0% | |
| TGGGGTAAGAGAAGCCAATA+AGG | - | chr1.3:55291967-55291986 | None:intergenic | 45.0% | |
| TTGAATAGACCCATCATCCC+TGG | + | chr1.3:55293103-55293122 | MS.gene07473:intron | 45.0% | |
| TTGAGTAGGTGGTTGGAGTT+GGG | + | chr1.3:55292593-55292612 | MS.gene07473:intron | 45.0% | |
| TTTAGCTGACCCCACTTAGT+GGG | + | chr1.3:55291156-55291175 | MS.gene07473:intron | 45.0% | |
| TTTCCTATTTCCGCTTCGTG+AGG | - | chr1.3:55291420-55291439 | None:intergenic | 45.0% | |
| ! | AATTGAGCTAGACTCTGGAG+TGG | - | chr1.3:55291993-55292012 | None:intergenic | 45.0% |
| ! | AATTTTTCGTCGCTGTCCTG+TGG | + | chr1.3:55291546-55291565 | MS.gene07473:intron | 45.0% |
| !! | ACAAATGTTACCGGCTTCTC+GGG | - | chr1.3:55291730-55291749 | None:intergenic | 45.0% |
| !! | CACAAATGTTACCGGCTTCT+CGG | - | chr1.3:55291731-55291750 | None:intergenic | 45.0% |
| !!! | CTAGACTCTGGAGTGGTTTT+GGG | - | chr1.3:55291986-55292005 | None:intergenic | 45.0% |
| !!! | TAGACTCTGGAGTGGTTTTG+GGG | - | chr1.3:55291985-55292004 | None:intergenic | 45.0% |
| !!! | TCTCTACCCATGTTTTGGTG+AGG | + | chr1.3:55291451-55291470 | MS.gene07473:intron | 45.0% |
| AGACCTTTCAGAAAGGAGGG+AGG | + | chr1.3:55293133-55293152 | MS.gene07473:intron | 50.0% | |
| AGCCGGTAACATTTGTGGAG+GGG | + | chr1.3:55291734-55291753 | MS.gene07473:CDS | 50.0% | |
| AGGTGATTGGAGTTGGGTGA+TGG | + | chr1.3:55292684-55292703 | MS.gene07473:intron | 50.0% | |
| CACTTAACCCAAGTCACGTC+AGG | - | chr1.3:55290787-55290806 | None:intergenic | 50.0% | |
| CATGGAGCCTCACCAAAACA+TGG | - | chr1.3:55291461-55291480 | None:intergenic | 50.0% | |
| CGAGAAGCCGGTAACATTTG+TGG | + | chr1.3:55291729-55291748 | MS.gene07473:CDS | 50.0% | |
| CTTTAGCTGACCCCACTTAG+TGG | + | chr1.3:55291155-55291174 | MS.gene07473:intron | 50.0% | |
| GAAGCCGGTAACATTTGTGG+AGG | + | chr1.3:55291732-55291751 | MS.gene07473:CDS | 50.0% | |
| TCATCGGTCCAAACCCTGTT+GGG | - | chr1.3:55292998-55293017 | None:intergenic | 50.0% | |
| TCTCCTCCCTCCTTTCTGAA+AGG | - | chr1.3:55293139-55293158 | None:intergenic | 50.0% | |
| TGACCCCACTTAGTGGGATA+AGG | + | chr1.3:55291162-55291181 | MS.gene07473:intron | 50.0% | |
| ! | GACGTGACTTGGGTTAAGTG+TGG | + | chr1.3:55290787-55290806 | MS.gene07473:intron | 50.0% |
| !!! | GCTAGACTCTGGAGTGGTTT+TGG | - | chr1.3:55291987-55292006 | None:intergenic | 50.0% |
| AATTGGAGTTTGCGCGTGCG+CGG | + | chr1.3:55290914-55290933 | MS.gene07473:intron | 55.0% | |
| ACGCACACGCTAACCCCAAT+TGG | - | chr1.3:55290968-55290987 | None:intergenic | 55.0% | |
| ACGCCTCACGAAGCGGAAAT+AGG | + | chr1.3:55291414-55291433 | MS.gene07473:intron | 55.0% | |
| AGGAAAGGAGAGACGAGGTG+TGG | + | chr1.3:55293171-55293190 | MS.gene07473:intron | 55.0% | |
| AGGGTTTGGACCGATGAGGA+GGG | + | chr1.3:55293001-55293020 | MS.gene07473:CDS | 55.0% | |
| ATCCAATCCTCCCTCTGACC+TGG | - | chr1.3:55292919-55292938 | None:intergenic | 55.0% | |
| CAACAGGGTTTGGACCGATG+AGG | + | chr1.3:55292997-55293016 | MS.gene07473:CDS | 55.0% | |
| CACAGCCATTCTATGGCCAC+AGG | - | chr1.3:55291565-55291584 | None:intergenic | 55.0% | |
| CTCATCGGTCCAAACCCTGT+TGG | - | chr1.3:55292999-55293018 | None:intergenic | 55.0% | |
| CTGGTCATTCTTGCAGGGCT+TGG | + | chr1.3:55291769-55291788 | MS.gene07473:CDS | 55.0% | |
| GAGAGACGAGGTGTGGTTCT+TGG | + | chr1.3:55293178-55293197 | MS.gene07473:intron | 55.0% | |
| GCCCCCTCCACAAATGTTAC+CGG | - | chr1.3:55291739-55291758 | None:intergenic | 55.0% | |
| GCCGGTAACATTTGTGGAGG+GGG | + | chr1.3:55291735-55291754 | MS.gene07473:CDS | 55.0% | |
| GCTCACACCTGACGTGACTT+GGG | + | chr1.3:55290777-55290796 | MS.gene07473:intron | 55.0% | |
| GCTGTCCTGTGGCCATAGAA+TGG | + | chr1.3:55291557-55291576 | MS.gene07473:intron | 55.0% | |
| GTGAGGCGTACACGCATACA+AGG | - | chr1.3:55291403-55291422 | None:intergenic | 55.0% | |
| TCAAAGGAGCTGACGGTGAG+TGG | + | chr1.3:55293403-55293422 | MS.gene07473:CDS | 55.0% | |
| TCTTGCAGGGCTTGGAGTTG+CGG | + | chr1.3:55291777-55291796 | MS.gene07473:CDS | 55.0% | |
| TGCTCACACCTGACGTGACT+TGG | + | chr1.3:55290776-55290795 | MS.gene07473:intron | 55.0% | |
| TGGATTTCCAGGTCAGAGGG+AGG | + | chr1.3:55292909-55292928 | MS.gene07473:intron | 55.0% | |
| TTCCAGGTCAGAGGGAGGAT+TGG | + | chr1.3:55292914-55292933 | MS.gene07473:intron | 55.0% | |
| !! | GGAGGGTGTTGAACATGTCG+AGG | + | chr1.3:55293018-55293037 | MS.gene07473:CDS | 55.0% |
| CAGGGTTTGGACCGATGAGG+AGG | + | chr1.3:55293000-55293019 | MS.gene07473:CDS | 60.0% | |
| GCGCACGCGCAAACTCCAAT+TGG | - | chr1.3:55290915-55290934 | None:intergenic | 60.0% | |
| TGCGTGTACGCCTCACGAAG+CGG | + | chr1.3:55291407-55291426 | MS.gene07473:intron | 60.0% | |
| TTCTTTATCCGGGGCCCCCA+TGG | + | chr1.3:55293354-55293373 | MS.gene07473:CDS | 60.0% | |
| CTTGGAGTTGCGGCTGCTGC+TGG | + | chr1.3:55291787-55291806 | MS.gene07473:CDS | 65.0% | |
| TTCCATGTCCATGGGGGCCC+CGG | - | chr1.3:55293365-55293384 | None:intergenic | 65.0% | |
| ATCCGGGGCCCCCATGGACA+TGG | + | chr1.3:55293360-55293379 | MS.gene07473:CDS | 70.0% | |
| !! | GGAGGGGGCGTCCTACAGTC+TGG | + | chr1.3:55291750-55291769 | MS.gene07473:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 55290510 | 55293518 | 55290510 | ID=MS.gene07473 |
| chr1.3 | mRNA | 55290510 | 55293518 | 55290510 | ID=MS.gene07473.t1;Parent=MS.gene07473 |
| chr1.3 | exon | 55290510 | 55290601 | 55290510 | ID=MS.gene07473.t1.exon1;Parent=MS.gene07473.t1 |
| chr1.3 | CDS | 55290510 | 55290601 | 55290510 | ID=cds.MS.gene07473.t1;Parent=MS.gene07473.t1 |
| chr1.3 | exon | 55291667 | 55291848 | 55291667 | ID=MS.gene07473.t1.exon2;Parent=MS.gene07473.t1 |
| chr1.3 | CDS | 55291667 | 55291848 | 55291667 | ID=cds.MS.gene07473.t1;Parent=MS.gene07473.t1 |
| chr1.3 | exon | 55292118 | 55292166 | 55292118 | ID=MS.gene07473.t1.exon3;Parent=MS.gene07473.t1 |
| chr1.3 | CDS | 55292118 | 55292166 | 55292118 | ID=cds.MS.gene07473.t1;Parent=MS.gene07473.t1 |
| chr1.3 | exon | 55292920 | 55293039 | 55292920 | ID=MS.gene07473.t1.exon4;Parent=MS.gene07473.t1 |
| chr1.3 | CDS | 55292920 | 55293039 | 55292920 | ID=cds.MS.gene07473.t1;Parent=MS.gene07473.t1 |
| chr1.3 | exon | 55293348 | 55293518 | 55293348 | ID=MS.gene07473.t1.exon5;Parent=MS.gene07473.t1 |
| chr1.3 | CDS | 55293348 | 55293518 | 55293348 | ID=cds.MS.gene07473.t1;Parent=MS.gene07473.t1 |
| Gene Sequence |
| Protein sequence |
