Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07835.t1 | XP_003627181.2 | 87 | 924 | 64 | 2 | 1 | 923 | 1 | 869 | 0.00E+00 | 1597.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07835.t1 | P38414 | 71.9 | 915 | 199 | 5 | 11 | 923 | 8 | 866 | 0.0e+00 | 1321.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07835.t1 | G7LIX6 | 87.0 | 924 | 64 | 2 | 1 | 923 | 1 | 869 | 0.0e+00 | 1597.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052700 | MS.gene07835 | 0.870547 | 1.34E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07835.t1 | MTR_8g018510 | 87.338 | 924 | 61 | 4 | 1 | 923 | 1 | 869 | 0.0 | 1646 |
| MS.gene07835.t1 | MTR_8g018520 | 75.615 | 935 | 149 | 10 | 1 | 923 | 1 | 868 | 0.0 | 1396 |
| MS.gene07835.t1 | MTR_8g018570 | 73.326 | 926 | 188 | 7 | 1 | 923 | 1 | 870 | 0.0 | 1385 |
| MS.gene07835.t1 | MTR_8g018550 | 72.186 | 924 | 200 | 4 | 1 | 923 | 1 | 868 | 0.0 | 1352 |
| MS.gene07835.t1 | MTR_8g018690 | 70.811 | 925 | 208 | 6 | 1 | 923 | 1 | 865 | 0.0 | 1350 |
| MS.gene07835.t1 | MTR_8g020990 | 70.238 | 924 | 218 | 4 | 1 | 923 | 1 | 868 | 0.0 | 1340 |
| MS.gene07835.t1 | MTR_8g018690 | 68.757 | 925 | 207 | 7 | 1 | 923 | 1 | 845 | 0.0 | 1298 |
| MS.gene07835.t1 | MTR_2g099570 | 62.879 | 924 | 279 | 9 | 1 | 923 | 1 | 861 | 0.0 | 1176 |
| MS.gene07835.t1 | MTR_8g018420 | 62.569 | 911 | 277 | 6 | 14 | 923 | 9 | 856 | 0.0 | 1162 |
| MS.gene07835.t1 | MTR_2g099560 | 60.541 | 925 | 301 | 9 | 1 | 923 | 1 | 863 | 0.0 | 1142 |
| MS.gene07835.t1 | MTR_8g018730 | 59.022 | 920 | 314 | 11 | 8 | 923 | 4 | 864 | 0.0 | 1095 |
| MS.gene07835.t1 | MTR_8g018735 | 58.843 | 916 | 316 | 10 | 11 | 923 | 8 | 865 | 0.0 | 1092 |
| MS.gene07835.t1 | MTR_3g081130 | 56.583 | 919 | 332 | 10 | 8 | 923 | 4 | 858 | 0.0 | 1056 |
| MS.gene07835.t1 | MTR_3g081130 | 57.464 | 844 | 297 | 8 | 83 | 923 | 2 | 786 | 0.0 | 1001 |
| MS.gene07835.t1 | MTR_8g018730 | 54.842 | 919 | 324 | 12 | 8 | 923 | 4 | 834 | 0.0 | 991 |
| MS.gene07835.t1 | MTR_8g018590 | 56.969 | 904 | 287 | 17 | 40 | 923 | 2 | 823 | 0.0 | 986 |
| MS.gene07835.t1 | MTR_1g083020 | 53.863 | 919 | 339 | 9 | 13 | 923 | 17 | 858 | 0.0 | 980 |
| MS.gene07835.t1 | MTR_8g018430 | 87.856 | 527 | 63 | 1 | 398 | 923 | 335 | 861 | 0.0 | 977 |
| MS.gene07835.t1 | MTR_8g018430 | 73.313 | 326 | 82 | 1 | 11 | 336 | 8 | 328 | 4.99e-165 | 504 |
| MS.gene07835.t1 | MTR_7g113410 | 52.324 | 925 | 354 | 11 | 10 | 923 | 19 | 867 | 0.0 | 960 |
| MS.gene07835.t1 | MTR_1g104650 | 51.299 | 924 | 359 | 12 | 15 | 923 | 9 | 856 | 0.0 | 937 |
| MS.gene07835.t1 | MTR_8g018450 | 84.393 | 519 | 78 | 2 | 408 | 923 | 310 | 828 | 0.0 | 919 |
| MS.gene07835.t1 | MTR_8g018450 | 64.444 | 315 | 95 | 5 | 11 | 324 | 8 | 306 | 1.35e-127 | 405 |
| MS.gene07835.t1 | MTR_5g024020 | 67.864 | 529 | 167 | 3 | 396 | 923 | 341 | 867 | 0.0 | 763 |
| MS.gene07835.t1 | MTR_5g024020 | 59.248 | 319 | 124 | 5 | 13 | 327 | 11 | 327 | 5.41e-117 | 378 |
| MS.gene07835.t1 | MTR_8g018730 | 59.438 | 641 | 201 | 8 | 285 | 923 | 1 | 584 | 0.0 | 763 |
| MS.gene07835.t1 | MTR_8g018650 | 69.844 | 514 | 138 | 3 | 411 | 923 | 310 | 807 | 0.0 | 755 |
| MS.gene07835.t1 | MTR_8g018650 | 56.774 | 310 | 118 | 4 | 14 | 322 | 9 | 303 | 2.58e-106 | 348 |
| MS.gene07835.t1 | MTR_8g018620 | 68.798 | 516 | 142 | 5 | 410 | 923 | 309 | 807 | 0.0 | 739 |
| MS.gene07835.t1 | MTR_8g018620 | 57.097 | 310 | 117 | 4 | 14 | 322 | 9 | 303 | 2.36e-107 | 351 |
| MS.gene07835.t1 | MTR_8g018735 | 55.789 | 665 | 234 | 9 | 11 | 672 | 8 | 615 | 0.0 | 730 |
| MS.gene07835.t1 | MTR_5g024020 | 64.015 | 528 | 153 | 3 | 396 | 923 | 341 | 831 | 0.0 | 705 |
| MS.gene07835.t1 | MTR_5g024020 | 59.248 | 319 | 124 | 5 | 13 | 327 | 11 | 327 | 2.95e-117 | 378 |
| MS.gene07835.t1 | MTR_8g021020 | 78.465 | 404 | 83 | 1 | 524 | 923 | 28 | 431 | 0.0 | 678 |
| MS.gene07835.t1 | MTR_4g066170 | 40.362 | 939 | 461 | 23 | 6 | 923 | 46 | 906 | 0.0 | 646 |
| MS.gene07835.t1 | MTR_3g479460 | 40.000 | 915 | 454 | 17 | 31 | 923 | 62 | 903 | 0.0 | 644 |
| MS.gene07835.t1 | MTR_3g079450 | 41.889 | 826 | 405 | 16 | 110 | 923 | 140 | 902 | 0.0 | 627 |
| MS.gene07835.t1 | MTR_8g011340 | 39.218 | 844 | 436 | 16 | 57 | 884 | 46 | 828 | 0.0 | 592 |
| MS.gene07835.t1 | MTR_3g079420 | 42.022 | 821 | 404 | 16 | 114 | 923 | 106 | 865 | 0.0 | 583 |
| MS.gene07835.t1 | MTR_8g020970 | 47.547 | 530 | 273 | 4 | 396 | 922 | 399 | 926 | 1.21e-170 | 521 |
| MS.gene07835.t1 | MTR_8g020970 | 40.753 | 292 | 161 | 7 | 35 | 322 | 93 | 376 | 1.54e-52 | 199 |
| MS.gene07835.t1 | MTR_8g080230 | 45.709 | 536 | 276 | 7 | 396 | 923 | 388 | 916 | 9.65e-157 | 484 |
| MS.gene07835.t1 | MTR_8g080230 | 37.828 | 267 | 147 | 9 | 65 | 322 | 109 | 365 | 9.61e-40 | 159 |
| MS.gene07835.t1 | MTR_4g088810 | 44.933 | 523 | 277 | 4 | 401 | 920 | 378 | 892 | 4.65e-150 | 466 |
| MS.gene07835.t1 | MTR_4g088810 | 36.066 | 305 | 178 | 9 | 8 | 303 | 54 | 350 | 1.14e-41 | 165 |
| MS.gene07835.t1 | MTR_6g452500 | 42.412 | 514 | 281 | 7 | 397 | 906 | 103 | 605 | 7.77e-143 | 438 |
| MS.gene07835.t1 | MTR_3g079450 | 41.187 | 573 | 265 | 14 | 110 | 672 | 140 | 650 | 8.98e-130 | 405 |
| MS.gene07835.t1 | MTR_8g020970 | 48.214 | 280 | 140 | 4 | 396 | 672 | 399 | 676 | 6.17e-76 | 262 |
| MS.gene07835.t1 | MTR_8g020970 | 40.753 | 292 | 161 | 7 | 35 | 322 | 93 | 376 | 1.05e-53 | 199 |
| MS.gene07835.t1 | MTR_7g012030 | 58.065 | 124 | 51 | 1 | 570 | 692 | 80 | 203 | 6.65e-42 | 152 |
| MS.gene07835.t1 | MTR_6g046330 | 52.593 | 135 | 52 | 2 | 570 | 692 | 70 | 204 | 8.49e-37 | 141 |
| MS.gene07835.t1 | MTR_8g463810 | 34.513 | 226 | 82 | 4 | 484 | 708 | 197 | 357 | 4.44e-32 | 130 |
| MS.gene07835.t1 | MTR_4g088805 | 40.659 | 91 | 54 | 0 | 832 | 922 | 1 | 91 | 5.22e-17 | 77.4 |
| MS.gene07835.t1 | MTR_7g113408 | 42.188 | 64 | 36 | 1 | 814 | 877 | 7 | 69 | 1.92e-12 | 64.3 |
| MS.gene07835.t1 | MTR_2g005920 | 48.214 | 56 | 29 | 0 | 796 | 851 | 58 | 113 | 2.44e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07835.t1 | AT1G55020 | 50.799 | 939 | 366 | 13 | 1 | 923 | 1 | 859 | 0.0 | 954 |
| MS.gene07835.t1 | AT3G22400 | 50.484 | 929 | 365 | 13 | 14 | 923 | 34 | 886 | 0.0 | 931 |
| MS.gene07835.t1 | AT1G17420 | 41.486 | 875 | 440 | 12 | 58 | 923 | 108 | 919 | 0.0 | 672 |
| MS.gene07835.t1 | AT1G72520 | 41.123 | 873 | 447 | 13 | 58 | 923 | 114 | 926 | 0.0 | 670 |
| MS.gene07835.t1 | AT3G45140 | 40.363 | 882 | 414 | 23 | 66 | 923 | 103 | 896 | 0.0 | 596 |
| MS.gene07835.t1 | AT1G67560 | 39.908 | 872 | 448 | 19 | 64 | 923 | 110 | 917 | 0.0 | 596 |
| MS.gene07835.t1 | AT3G45140 | 41.496 | 829 | 383 | 21 | 119 | 923 | 4 | 754 | 0.0 | 587 |
Find 228 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTACTTCCATACCAATTT+TGG | 0.089508 | 8.3:+72060330 | MS.gene07835:CDS |
| CATCATGCAGCTGTTAATTT+TGG | 0.165788 | 8.3:+72065288 | MS.gene07835:CDS |
| CCACTGTGCCCTTCACCTTT+TGG | 0.205162 | 8.3:-72058234 | None:intergenic |
| CTTTAGGAGGTGGAAACTTT+AGG | 0.219107 | 8.3:-72063559 | None:intergenic |
| GTATGTAAAGCTTGTTGTTT+TGG | 0.234578 | 8.3:-72064110 | None:intergenic |
| AAACCATGAAACTCATTAAA+TGG | 0.239469 | 8.3:-72065736 | None:intergenic |
| TATAGAATCAACATTCTTAA+TGG | 0.251411 | 8.3:+72064654 | MS.gene07835:CDS |
| ATTCTGAACTGGAAGCATTT+TGG | 0.258615 | 8.3:+72065148 | MS.gene07835:CDS |
| GACTGGCCTGCTCCCAAAAT+TGG | 0.265639 | 8.3:-72060343 | None:intergenic |
| AGCTTGGCTCGTCCCGTTAT+TGG | 0.267881 | 8.3:+72060932 | MS.gene07835:CDS |
| TACCTAATGATCTACTTAAA+AGG | 0.269659 | 8.3:+72064740 | MS.gene07835:CDS |
| TTTAGGAGGTGGAAACTTTA+GGG | 0.285322 | 8.3:-72063558 | None:intergenic |
| TAGATACCTTGAATCACTTT+AGG | 0.292784 | 8.3:-72063575 | None:intergenic |
| GTTTAGCTGTAACTGTTCTT+TGG | 0.296790 | 8.3:-72063946 | None:intergenic |
| GCTTCAACACCTTCCTTTGC+AGG | 0.298053 | 8.3:-72064315 | None:intergenic |
| GAAGAATTGAAGACTTTAAG+AGG | 0.337498 | 8.3:+72060824 | MS.gene07835:CDS |
| CATTAAATGGAGATACTATT+AGG | 0.340776 | 8.3:-72065723 | None:intergenic |
| TTCTGATTCACAGCCATTAG+AGG | 0.344188 | 8.3:+72065545 | MS.gene07835:CDS |
| CTGCTGATGGACTAGAGATA+TGG | 0.344271 | 8.3:+72065055 | MS.gene07835:CDS |
| ATAGAATCAACATTCTTAAT+GGG | 0.362811 | 8.3:+72064655 | MS.gene07835:CDS |
| TGCTATATTATATAAGGATT+GGG | 0.365078 | 8.3:+72064699 | MS.gene07835:CDS |
| CTGCTATATTATATAAGGAT+TGG | 0.366515 | 8.3:+72064698 | MS.gene07835:CDS |
| ATTGTCTGCTATATTATATA+AGG | 0.367333 | 8.3:+72064693 | MS.gene07835:CDS |
| AGCAAGCTAAATGCTGAATA+TGG | 0.370132 | 8.3:+72063903 | MS.gene07835:CDS |
| AGAAGCGCCGATGGAGGCCC+CGG | 0.373552 | 8.3:-72058380 | None:intergenic |
| TCTTCTCTATAGTAGACTAA+TGG | 0.377121 | 8.3:-72060803 | None:intergenic |
| TCCATCCCAGGGGCTTTCCC+TGG | 0.380090 | 8.3:+72063275 | MS.gene07835:CDS |
| AGAGTTGCATACAAAGTTGA+TGG | 0.380177 | 8.3:-72060494 | None:intergenic |
| CATTCATCATAGCAACAAAT+AGG | 0.380660 | 8.3:+72064524 | MS.gene07835:CDS |
| AAGGTGTTGAAGCTTCTATT+TGG | 0.386060 | 8.3:+72064325 | MS.gene07835:CDS |
| TCATCAAAGCTGGTAAATTC+TGG | 0.386583 | 8.3:-72061306 | None:intergenic |
| TCAGCATTTAGCTTGCTCTT+TGG | 0.386589 | 8.3:-72063897 | None:intergenic |
| AGCCCCTGGGATGGACAAAA+AGG | 0.387316 | 8.3:-72063267 | None:intergenic |
| TTTAGTCAAAAGTGGATTCA+AGG | 0.389226 | 8.3:+72058321 | MS.gene07835:CDS |
| TGACCAAATGCTTCATCTCT+TGG | 0.391905 | 8.3:-72061186 | None:intergenic |
| AGGAAGCGGAAAAGGGAAAG+TGG | 0.395527 | 8.3:+72060282 | MS.gene07835:intron |
| CCACCTCCTAAAGTGATTCA+AGG | 0.407448 | 8.3:+72063569 | MS.gene07835:CDS |
| ACAAGACTTCTATGATTGTA+AGG | 0.408698 | 8.3:-72065464 | None:intergenic |
| AATAGTGATATGGGAGTTCC+AGG | 0.408824 | 8.3:+72060391 | MS.gene07835:CDS |
| TGGTATATTCATTACCTTGT+TGG | 0.409146 | 8.3:-72060563 | None:intergenic |
| TCAACTTTGTATGCAACTCT+TGG | 0.409868 | 8.3:+72060497 | MS.gene07835:CDS |
| GGAGAGAAAACTTATATTGA+AGG | 0.414733 | 8.3:+72060304 | MS.gene07835:CDS |
| CATTTAGCTTGCTCTTTGGT+GGG | 0.415059 | 8.3:-72063893 | None:intergenic |
| AAGCTTGTACTATCCTCATA+TGG | 0.415647 | 8.3:+72065253 | MS.gene07835:CDS |
| GCATTTAGCTTGCTCTTTGG+TGG | 0.416143 | 8.3:-72063894 | None:intergenic |
| TTAAGTATATATCCTCCATA+TGG | 0.416729 | 8.3:-72065318 | None:intergenic |
| GTCAATCCTTCCTCACTTGA+AGG | 0.416919 | 8.3:-72065687 | None:intergenic |
| CATCCTCAGGCTGATAGCTT+TGG | 0.418449 | 8.3:+72064270 | MS.gene07835:CDS |
| CTATTTGTTGCTATGATGAA+TGG | 0.420998 | 8.3:-72064523 | None:intergenic |
| ATATTTGTAGGAAGCGGAAA+AGG | 0.421470 | 8.3:+72060274 | MS.gene07835:intron |
| TACTCAGTAGACCCTTTCTT+AGG | 0.422090 | 8.3:-72065369 | None:intergenic |
| AAGCTATCAGCCTGAGGATG+TGG | 0.423011 | 8.3:-72064267 | None:intergenic |
| AACCTCTTGAAAGCCTCTAA+TGG | 0.423434 | 8.3:-72065558 | None:intergenic |
| GTTCCAAGAGATGAAGCATT+TGG | 0.423704 | 8.3:+72061183 | MS.gene07835:CDS |
| TGGCATTCGCCTTCTTATAG+AGG | 0.425156 | 8.3:+72065020 | MS.gene07835:CDS |
| GGCAAGTAAACATCACTAAC+AGG | 0.428007 | 8.3:-72064294 | None:intergenic |
| AAGTTGATGGTTCCATGGTT+AGG | 0.428790 | 8.3:-72060481 | None:intergenic |
| CACCTTCATTTCTCTGTCCA+AGG | 0.428954 | 8.3:-72065512 | None:intergenic |
| GTAATTGCAGATTGTAATTG+AGG | 0.430422 | 8.3:-72061267 | None:intergenic |
| GCGCTATAATTGACACCGCC+GGG | 0.430425 | 8.3:+72058362 | MS.gene07835:CDS |
| GCCAAGCTTGCGTAGTTGTC+AGG | 0.431041 | 8.3:-72060917 | None:intergenic |
| TTTGAATGGAATAGTGATAT+GGG | 0.431104 | 8.3:+72060382 | MS.gene07835:CDS |
| TCATTAGGTAGTCCTTGATC+TGG | 0.433138 | 8.3:-72064727 | None:intergenic |
| GAACCCCTGGGAAATTTGCC+AGG | 0.435243 | 8.3:-72063457 | None:intergenic |
| TCGGCGCTTCTGTGGCTCTC+AGG | 0.438364 | 8.3:+72058392 | MS.gene07835:CDS |
| GGAAGCAAGAGTTTATGAAT+AGG | 0.438914 | 8.3:-72064565 | None:intergenic |
| TTAGAGGCTTTCAAGAGGTT+TGG | 0.439698 | 8.3:+72065561 | MS.gene07835:CDS |
| TTGAAGACTTTAAGAGGAGA+TGG | 0.440165 | 8.3:+72060830 | MS.gene07835:CDS |
| TCTAGTCCATCAGCAGCATA+AGG | 0.440778 | 8.3:-72065048 | None:intergenic |
| ACACATCATCAAAAGAATTC+AGG | 0.441238 | 8.3:+72063751 | MS.gene07835:CDS |
| CTACTTAGCTCAATGGCTAA+TGG | 0.442112 | 8.3:-72064243 | None:intergenic |
| TTCTATTTGGCTCCTTGCCA+AGG | 0.442825 | 8.3:+72064338 | MS.gene07835:CDS |
| CAGCAAATTAAGATGTATGC+AGG | 0.449069 | 8.3:+72058187 | None:intergenic |
| TGACAGGGGTTTGGAACCCC+TGG | 0.449764 | 8.3:-72063470 | None:intergenic |
| TGGAGAGAAGTTGTAGAGGT+GGG | 0.451733 | 8.3:+72065168 | MS.gene07835:CDS |
| CTTTCCCTGGCATATTCCCT+CGG | 0.453971 | 8.3:+72063288 | MS.gene07835:CDS |
| ATTTACAATAACATAGGCCT+TGG | 0.455004 | 8.3:-72064355 | None:intergenic |
| TTCTCAATATAAAATGCTCC+TGG | 0.455314 | 8.3:-72060409 | None:intergenic |
| CAAGAGGTTTGGTAGGAAGT+TGG | 0.456860 | 8.3:+72065572 | MS.gene07835:CDS |
| GGCGCTATAATTGACACCGC+CGG | 0.459938 | 8.3:+72058361 | MS.gene07835:CDS |
| GAAGCAAGAGTTTATGAATA+GGG | 0.463724 | 8.3:-72064564 | None:intergenic |
| ATGTGTCTTCTACTCTTAGT+TGG | 0.465425 | 8.3:-72065345 | None:intergenic |
| CGAATGCCATGTGGGGAAGT+TGG | 0.465729 | 8.3:-72065006 | None:intergenic |
| GTCTTCTACTCTTAGTTGGT+CGG | 0.469812 | 8.3:-72065341 | None:intergenic |
| CTTCCGAACTGATGGTGAAT+CGG | 0.470853 | 8.3:+72063535 | MS.gene07835:CDS |
| CATGGTTAGGAATATCTTCA+AGG | 0.473639 | 8.3:-72060468 | None:intergenic |
| GAAGGATAAAGCAGAGTGTA+TGG | 0.476976 | 8.3:-72065669 | None:intergenic |
| GACACCGCCGGGGCCTCCAT+CGG | 0.479190 | 8.3:+72058373 | MS.gene07835:CDS |
| ACCACTAGTTTAGTCAAAAG+TGG | 0.484472 | 8.3:+72058313 | MS.gene07835:CDS |
| GTGTCGGATCCTCCAATAAC+GGG | 0.484538 | 8.3:-72060944 | None:intergenic |
| CTTTATCCTTCAAGTGAGGA+AGG | 0.493640 | 8.3:+72065681 | MS.gene07835:CDS |
| TTGGCTCGTCCCGTTATTGG+AGG | 0.494474 | 8.3:+72060935 | MS.gene07835:CDS |
| GTCAGCGCAAGGAACATGAT+AGG | 0.497891 | 8.3:+72060858 | MS.gene07835:CDS |
| AGAAGACACATGCCTAAGAA+AGG | 0.499009 | 8.3:+72065357 | MS.gene07835:CDS |
| GCCTGCTCCCAAAATTGGTA+TGG | 0.499244 | 8.3:-72060338 | None:intergenic |
| TAGGAAGTTGGCTGAAATTG+AGG | 0.499459 | 8.3:+72065584 | MS.gene07835:CDS |
| GCTAAGTAGCCCACATCCTC+AGG | 0.499939 | 8.3:+72064257 | MS.gene07835:CDS |
| AGGCTTTCAAGAGGTTTGGT+AGG | 0.501480 | 8.3:+72065565 | MS.gene07835:CDS |
| CTTCAAGGGTCAAACTTACA+AGG | 0.503229 | 8.3:-72060453 | None:intergenic |
| TATATGCCAGGTGTTGTCCT+TGG | 0.504071 | 8.3:+72063427 | MS.gene07835:CDS |
| TGTCATATTTCTTGTAGTGA+AGG | 0.505065 | 8.3:+72063508 | MS.gene07835:CDS |
| AGATCCTAAAAGTGAGAGTC+GGG | 0.505237 | 8.3:+72061146 | MS.gene07835:intron |
| CCTTGAATCACTTTAGGAGG+TGG | 0.505940 | 8.3:-72063569 | None:intergenic |
| TAAGTATATATCCTCCATAT+GGG | 0.508811 | 8.3:-72065317 | None:intergenic |
| GTTTAAGATGCAAACTTGCT+CGG | 0.515286 | 8.3:+72065221 | MS.gene07835:CDS |
| CTAGTCCATCAGCAGCATAA+GGG | 0.516437 | 8.3:-72065047 | None:intergenic |
| GGCCTCCATCGGCGCTTCTG+TGG | 0.516544 | 8.3:+72058384 | MS.gene07835:CDS |
| TGCTGATGGACTAGAGATAT+GGG | 0.516726 | 8.3:+72065056 | MS.gene07835:CDS |
| GGGCCGATTCACCATCAGTT+CGG | 0.517224 | 8.3:-72063538 | None:intergenic |
| TGTGATTAAGAGAGGCCAAA+AGG | 0.518374 | 8.3:+72058219 | MS.gene07835:CDS |
| GGAAGCGGAAAAGGGAAAGT+GGG | 0.519463 | 8.3:+72060283 | MS.gene07835:intron |
| AATGGAGCTGGTGTTTCACT+TGG | 0.519813 | 8.3:-72060785 | None:intergenic |
| TATGGGATGCTATCAAATCA+TGG | 0.520070 | 8.3:+72065073 | MS.gene07835:CDS |
| TCCTGACAACTACGCAAGCT+TGG | 0.520663 | 8.3:+72060916 | MS.gene07835:CDS |
| TTTGCAAGGGAGATGATTGC+TGG | 0.521676 | 8.3:+72063719 | MS.gene07835:CDS |
| GAAGTTGTAGAGGTGGGTCA+TGG | 0.521933 | 8.3:+72065174 | MS.gene07835:CDS |
| TATATTGAGAATAACATGAC+AGG | 0.522986 | 8.3:+72060421 | MS.gene07835:CDS |
| AGAGAAATGAAGGTGAAGCT+TGG | 0.528891 | 8.3:+72065520 | MS.gene07835:CDS |
| TTTCCCTGGCAAATTTCCCA+GGG | 0.530647 | 8.3:+72063453 | MS.gene07835:CDS |
| GACTTTAAGAGGAGATGGAA+AGG | 0.530818 | 8.3:+72060835 | MS.gene07835:CDS |
| TGCACTTGCAAGGAGTGTCT+TGG | 0.531139 | 8.3:+72064615 | MS.gene07835:CDS |
| TACCTTGGACAGAGAAATGA+AGG | 0.533440 | 8.3:+72065510 | MS.gene07835:CDS |
| GGCGGTGTCAATTATAGCGC+CGG | 0.534286 | 8.3:-72058359 | None:intergenic |
| CACCTTGCCTTACCCTCGAA+GGG | 0.535336 | 8.3:+72060964 | MS.gene07835:CDS |
| GAGAGCCACAGAAGCGCCGA+TGG | 0.535445 | 8.3:-72058389 | None:intergenic |
| CTACGATGTTTACAATGACT+TGG | 0.535774 | 8.3:+72060889 | MS.gene07835:CDS |
| AAACCCTTGTGTTATATGCC+AGG | 0.536532 | 8.3:+72063415 | MS.gene07835:CDS |
| AGTAGCATATGCCTTTGTAT+CGG | 0.538630 | 8.3:-72064181 | None:intergenic |
| ATACAAAGTTGATGGTTCCA+TGG | 0.541812 | 8.3:-72060486 | None:intergenic |
| AATATGCCAGGGAAAGCCCC+TGG | 0.542664 | 8.3:-72063281 | None:intergenic |
| AATGAATATCATATGCAGAC+TGG | 0.545927 | 8.3:-72060360 | None:intergenic |
| AAGGAACTCTTCCGAACTGA+TGG | 0.546312 | 8.3:+72063527 | MS.gene07835:CDS |
| CAAACCCCTGTCAAAATCCC+TGG | 0.548061 | 8.3:+72063480 | MS.gene07835:CDS |
| ATGTGGGCTACTTAGCTCAA+TGG | 0.548079 | 8.3:-72064250 | None:intergenic |
| GACAGGGGTTTGGAACCCCT+GGG | 0.548417 | 8.3:-72063469 | None:intergenic |
| TATTTGTAGGAAGCGGAAAA+GGG | 0.550518 | 8.3:+72060275 | MS.gene07835:intron |
| CAGTTACAGCTAAACATGGA+TGG | 0.551540 | 8.3:+72063954 | MS.gene07835:CDS |
| CTATAGTAGACTAATGGAGC+TGG | 0.551845 | 8.3:-72060797 | None:intergenic |
| TGTTGCGCAAGATTCTGAAC+TGG | 0.552417 | 8.3:+72065137 | MS.gene07835:CDS |
| ATACCTTGAATCACTTTAGG+AGG | 0.553206 | 8.3:-72063572 | None:intergenic |
| AGTTACAGCTAAACATGGAT+GGG | 0.553988 | 8.3:+72063955 | MS.gene07835:CDS |
| ACACCTTGCCTTACCCTCGA+AGG | 0.554207 | 8.3:+72060963 | MS.gene07835:CDS |
| GGTGTCGGATCCTCCAATAA+CGG | 0.554285 | 8.3:-72060945 | None:intergenic |
| GACTACCCTTATGCTGCTGA+TGG | 0.554343 | 8.3:+72065042 | MS.gene07835:CDS |
| TTCACCAACTTGTCAGCCAC+TGG | 0.557476 | 8.3:+72064388 | MS.gene07835:CDS |
| GCTTCTGATGAGCAATACCT+TGG | 0.559094 | 8.3:+72065495 | MS.gene07835:CDS |
| AGAGTGTATGGCATATTCAC+AGG | 0.562287 | 8.3:-72065657 | None:intergenic |
| CATTAGGTAGTCCTTGATCT+GGG | 0.563331 | 8.3:-72064726 | None:intergenic |
| TGACCGCACATCATCAAAGC+TGG | 0.563563 | 8.3:-72061316 | None:intergenic |
| TAAGAGAGGCCAAAAGGTGA+AGG | 0.563798 | 8.3:+72058225 | MS.gene07835:CDS |
| GAAGACACATGCCTAAGAAA+GGG | 0.564085 | 8.3:+72065358 | MS.gene07835:CDS |
| GCATATTCACAGGCCCGTAT+CGG | 0.564299 | 8.3:-72065647 | None:intergenic |
| GAGCTGGTGTTTCACTTGGA+AGG | 0.572257 | 8.3:-72060781 | None:intergenic |
| AAGGGTAGTCCTCTATAAGA+AGG | 0.572374 | 8.3:-72065029 | None:intergenic |
| ATCTAGAGGAGTGGCTGTCG+AGG | 0.572609 | 8.3:+72064981 | MS.gene07835:intron |
| AGCTATCAGCCTGAGGATGT+GGG | 0.574193 | 8.3:-72064266 | None:intergenic |
| GCCAGGGAAAGCCCCTGGGA+TGG | 0.576658 | 8.3:-72063276 | None:intergenic |
| GAGCAGTTAATCAGTCTGCA+TGG | 0.576806 | 8.3:+72063681 | MS.gene07835:intron |
| AATAAATGCAGCCGATACAA+AGG | 0.577750 | 8.3:+72064170 | MS.gene07835:CDS |
| TTGGAGAGAAGTTGTAGAGG+TGG | 0.579539 | 8.3:+72065167 | MS.gene07835:CDS |
| ATGGGATGCTATCAAATCAT+GGG | 0.579715 | 8.3:+72065074 | MS.gene07835:CDS |
| TTCGACATCAATGCCATCAG+TGG | 0.580057 | 8.3:+72058277 | MS.gene07835:CDS |
| ATGGTTAGGAATATCTTCAA+GGG | 0.581486 | 8.3:-72060467 | None:intergenic |
| AGAGTCATTTACAATAACAT+AGG | 0.582694 | 8.3:-72064361 | None:intergenic |
| GCTTTCTAAGAACTTTCAGA+AGG | 0.585522 | 8.3:+72065398 | MS.gene07835:CDS |
| ATCAGTGCTACCGCTTCTGA+TGG | 0.586071 | 8.3:+72058418 | MS.gene07835:CDS |
| AGCCACAGAAGCGCCGATGG+AGG | 0.586958 | 8.3:-72058386 | None:intergenic |
| AGTCATTGAGAAACCGATAC+GGG | 0.587451 | 8.3:+72065634 | MS.gene07835:CDS |
| TTGAGGCAAAGCTCATTGAA+AGG | 0.587750 | 8.3:+72065601 | MS.gene07835:CDS |
| GTGCTGAAGCAATCCATATG+AGG | 0.588956 | 8.3:-72065266 | None:intergenic |
| TGTACCAGTGGCTGACAAGT+TGG | 0.589181 | 8.3:-72064392 | None:intergenic |
| GACTGATGAAGAATTTGCAA+GGG | 0.596706 | 8.3:+72063706 | MS.gene07835:CDS |
| TGATGTTTACTTGCCTGCAA+AGG | 0.596844 | 8.3:+72064302 | MS.gene07835:CDS |
| CAGATCCTAAAAGTGAGAGT+CGG | 0.598343 | 8.3:+72061145 | MS.gene07835:intron |
| GAGTCATTGAGAAACCGATA+CGG | 0.598611 | 8.3:+72065633 | MS.gene07835:CDS |
| ACTTTAAGAGGAGATGGAAA+GGG | 0.598877 | 8.3:+72060836 | MS.gene07835:CDS |
| GAGGAAGGATTGACTTGCAG+AGG | 0.599561 | 8.3:+72065696 | MS.gene07835:CDS |
| AGATGGAAAGGGTCAGCGCA+AGG | 0.601945 | 8.3:+72060847 | MS.gene07835:CDS |
| AACAAATAGGCATCTTAGCG+TGG | 0.603243 | 8.3:+72064537 | MS.gene07835:CDS |
| ACGCATCTTCTTCGCCAACA+AGG | 0.603727 | 8.3:+72060549 | MS.gene07835:CDS |
| TTCATTGTGTCACGATAATG+TGG | 0.604329 | 8.3:-72064586 | None:intergenic |
| TAAGAAGGCGAATGCCATGT+GGG | 0.605764 | 8.3:-72065014 | None:intergenic |
| CTTGAAGATATTCCTAACCA+TGG | 0.606094 | 8.3:+72060469 | MS.gene07835:CDS |
| AACCCCTGGGAAATTTGCCA+GGG | 0.606683 | 8.3:-72063456 | None:intergenic |
| TACGATGTTTACAATGACTT+GGG | 0.606736 | 8.3:+72060890 | MS.gene07835:CDS |
| GATATGGATATATTGAGTCA+TGG | 0.608683 | 8.3:-72064140 | None:intergenic |
| TTGAAAAGTGTGATTAAGAG+AGG | 0.613449 | 8.3:+72058211 | MS.gene07835:CDS |
| CAATAACATAGGCCTTGGCA+AGG | 0.615590 | 8.3:-72064350 | None:intergenic |
| ATATGCCAGGGAAAGCCCCT+GGG | 0.616719 | 8.3:-72063280 | None:intergenic |
| AAAATGCCAAGGACAACACC+TGG | 0.618003 | 8.3:-72063433 | None:intergenic |
| AACACCTGGCATATAACACA+AGG | 0.620609 | 8.3:-72063419 | None:intergenic |
| TAAGTTATTACCATCAGAAG+CGG | 0.620851 | 8.3:-72058428 | None:intergenic |
| AGCGCCGATGGAGGCCCCGG+CGG | 0.621894 | 8.3:-72058377 | None:intergenic |
| ACTCAATATATCCATATCTG+AGG | 0.622340 | 8.3:+72064145 | MS.gene07835:CDS |
| TTTGGTCAATACCCATATGG+AGG | 0.625329 | 8.3:+72065306 | MS.gene07835:CDS |
| TTACCAGCTTTGATGATGTG+CGG | 0.627282 | 8.3:+72061313 | MS.gene07835:CDS |
| TATGATTGTAAGGTCAGTGA+GGG | 0.628518 | 8.3:-72065454 | None:intergenic |
| GTTTACTTGCCTGCAAAGGA+AGG | 0.628654 | 8.3:+72064306 | MS.gene07835:CDS |
| GAGTGTCTTGGTAAATGCAG+AGG | 0.628961 | 8.3:+72064627 | MS.gene07835:CDS |
| TTCCCTGGCAAATTTCCCAG+GGG | 0.633881 | 8.3:+72063454 | MS.gene07835:CDS |
| ACTTTCAGAAGGCGTATCTG+AGG | 0.634152 | 8.3:+72065409 | MS.gene07835:CDS |
| AGAACAGTTACAGCTAAACA+TGG | 0.634430 | 8.3:+72063950 | MS.gene07835:CDS |
| ATTTGCCAGGGAAAATGCCA+AGG | 0.636609 | 8.3:-72063444 | None:intergenic |
| TGAACATTAATGCACTTGCA+AGG | 0.638089 | 8.3:+72064605 | MS.gene07835:CDS |
| CGCTATAATTGACACCGCCG+GGG | 0.640358 | 8.3:+72058363 | MS.gene07835:CDS |
| AGTGTCTTGGTAAATGCAGA+GGG | 0.642136 | 8.3:+72064628 | MS.gene07835:CDS |
| AGCAAATTAAGATGTATGCA+GGG | 0.642640 | 8.3:+72058188 | None:intergenic |
| CAATCATAGAAGTCTTGTCA+AGG | 0.644608 | 8.3:+72065469 | MS.gene07835:CDS |
| TCTGCTTTATCCTTCAAGTG+AGG | 0.644857 | 8.3:+72065677 | MS.gene07835:CDS |
| GAGGATCCAACTTCCCCACA+TGG | 0.646308 | 8.3:+72065000 | MS.gene07835:CDS |
| AAGAGAGGCCAAAAGGTGAA+GGG | 0.652859 | 8.3:+72058226 | MS.gene07835:CDS |
| TGACTGATGAAGAATTTGCA+AGG | 0.653058 | 8.3:+72063705 | MS.gene07835:CDS |
| GGTGTCAATTATAGCGCCGG+CGG | 0.653936 | 8.3:-72058356 | None:intergenic |
| TCGAGGGTAAGGCAAGGTGT+CGG | 0.654212 | 8.3:-72060960 | None:intergenic |
| AGCCATTAGAGGCTTTCAAG+AGG | 0.658271 | 8.3:+72065556 | MS.gene07835:CDS |
| ATAAGAAGGCGAATGCCATG+TGG | 0.659079 | 8.3:-72065015 | None:intergenic |
| ACCTTGCCTTACCCTCGAAG+GGG | 0.659200 | 8.3:+72060965 | MS.gene07835:CDS |
| GCATGCTATATCTAGAGGAG+TGG | 0.665208 | 8.3:+72064972 | MS.gene07835:intron |
| GTTACAGCTAAACATGGATG+GGG | 0.665834 | 8.3:+72063956 | MS.gene07835:CDS |
| AAAACCGAGGGAATATGCCA+GGG | 0.671184 | 8.3:-72063292 | None:intergenic |
| AAGAAGGCGAATGCCATGTG+GGG | 0.675767 | 8.3:-72065013 | None:intergenic |
| CCTTGCCTTACCCTCGAAGG+GGG | 0.681885 | 8.3:+72060966 | MS.gene07835:CDS |
| CTATGATTGTAAGGTCAGTG+AGG | 0.688724 | 8.3:-72065455 | None:intergenic |
| GGACCAAAGCTATCAGCCTG+AGG | 0.704451 | 8.3:-72064273 | None:intergenic |
| GTGATTTGAAGAATGCTACA+TGG | 0.707488 | 8.3:+72065196 | MS.gene07835:CDS |
| CCAAAAGGTGAAGGGCACAG+TGG | 0.713521 | 8.3:+72058234 | MS.gene07835:CDS |
| ATTTGAAGAATGCTACATGG+TGG | 0.753052 | 8.3:+72065199 | MS.gene07835:CDS |
| ACACCTGGCATATAACACAA+GGG | 0.768752 | 8.3:-72063418 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 72058199 | 72065743 | 72058199 | ID=MS.gene07835 |
| chr8.3 | mRNA | 72058199 | 72065743 | 72058199 | ID=MS.gene07835.t1;Parent=MS.gene07835 |
| chr8.3 | exon | 72058199 | 72058439 | 72058199 | ID=MS.gene07835.t1.exon1;Parent=MS.gene07835.t1 |
| chr8.3 | CDS | 72058199 | 72058439 | 72058199 | ID=cds.MS.gene07835.t1;Parent=MS.gene07835.t1 |
| chr8.3 | exon | 72060284 | 72060570 | 72060284 | ID=MS.gene07835.t1.exon2;Parent=MS.gene07835.t1 |
| chr8.3 | CDS | 72060284 | 72060570 | 72060284 | ID=cds.MS.gene07835.t1;Parent=MS.gene07835.t1 |
| chr8.3 | exon | 72060776 | 72061016 | 72060776 | ID=MS.gene07835.t1.exon3;Parent=MS.gene07835.t1 |
| chr8.3 | CDS | 72060776 | 72061016 | 72060776 | ID=cds.MS.gene07835.t1;Parent=MS.gene07835.t1 |
| chr8.3 | exon | 72061148 | 72061348 | 72061148 | ID=MS.gene07835.t1.exon4;Parent=MS.gene07835.t1 |
| chr8.3 | CDS | 72061148 | 72061348 | 72061148 | ID=cds.MS.gene07835.t1;Parent=MS.gene07835.t1 |
| chr8.3 | exon | 72063216 | 72063309 | 72063216 | ID=MS.gene07835.t1.exon5;Parent=MS.gene07835.t1 |
| chr8.3 | CDS | 72063216 | 72063309 | 72063216 | ID=cds.MS.gene07835.t1;Parent=MS.gene07835.t1 |
| chr8.3 | exon | 72063400 | 72063590 | 72063400 | ID=MS.gene07835.t1.exon6;Parent=MS.gene07835.t1 |
| chr8.3 | CDS | 72063400 | 72063590 | 72063400 | ID=cds.MS.gene07835.t1;Parent=MS.gene07835.t1 |
| chr8.3 | exon | 72063687 | 72063772 | 72063687 | ID=MS.gene07835.t1.exon7;Parent=MS.gene07835.t1 |
| chr8.3 | CDS | 72063687 | 72063772 | 72063687 | ID=cds.MS.gene07835.t1;Parent=MS.gene07835.t1 |
| chr8.3 | exon | 72063888 | 72063992 | 72063888 | ID=MS.gene07835.t1.exon8;Parent=MS.gene07835.t1 |
| chr8.3 | CDS | 72063888 | 72063992 | 72063888 | ID=cds.MS.gene07835.t1;Parent=MS.gene07835.t1 |
| chr8.3 | exon | 72064105 | 72064409 | 72064105 | ID=MS.gene07835.t1.exon9;Parent=MS.gene07835.t1 |
| chr8.3 | CDS | 72064105 | 72064409 | 72064105 | ID=cds.MS.gene07835.t1;Parent=MS.gene07835.t1 |
| chr8.3 | exon | 72064498 | 72064761 | 72064498 | ID=MS.gene07835.t1.exon10;Parent=MS.gene07835.t1 |
| chr8.3 | CDS | 72064498 | 72064761 | 72064498 | ID=cds.MS.gene07835.t1;Parent=MS.gene07835.t1 |
| chr8.3 | exon | 72064987 | 72065743 | 72064987 | ID=MS.gene07835.t1.exon11;Parent=MS.gene07835.t1 |
| chr8.3 | CDS | 72064987 | 72065743 | 72064987 | ID=cds.MS.gene07835.t1;Parent=MS.gene07835.t1 |
| Gene Sequence |
| Protein sequence |