AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene07963

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07963.t1 MTR_4g045707 75.064 389 96 1 1 389 1 388 0.0 587
MS.gene07963.t1 MTR_3g101010 69.767 387 114 2 5 389 4 389 0.0 521
MS.gene07963.t1 MTR_3g018740 67.188 384 124 2 5 387 4 386 0.0 516
MS.gene07963.t1 MTR_3g048000 65.354 381 114 2 7 387 28 390 3.98e-178 501
MS.gene07963.t1 MTR_8g027395 64.341 387 129 3 6 389 17 397 1.73e-174 492
MS.gene07963.t1 MTR_2g046030 64.010 389 128 4 5 387 4 386 1.22e-172 487
MS.gene07963.t1 MTR_2g045980 64.781 389 125 5 5 387 4 386 2.18e-171 484
MS.gene07963.t1 MTR_3g101030 63.659 410 121 10 4 389 24 429 2.59e-171 485
MS.gene07963.t1 MTR_8g461160 62.879 396 134 5 1 387 1 392 4.04e-168 476
MS.gene07963.t1 MTR_7g451890 60.309 388 147 3 6 387 14 400 4.31e-163 463
MS.gene07963.t1 MTR_3g101180 60.150 399 146 5 1 387 1 398 4.69e-163 463
MS.gene07963.t1 MTR_8g027420 61.458 384 134 3 6 389 6 375 3.11e-161 457
MS.gene07963.t1 MTR_7g047780 59.278 388 151 3 6 387 14 400 5.06e-160 456
MS.gene07963.t1 MTR_7g050750 60.154 389 148 4 5 387 7 394 3.61e-159 453
MS.gene07963.t1 MTR_4g088525 61.853 367 131 3 25 388 8 368 5.93e-159 451
MS.gene07963.t1 MTR_3g101130 59.343 396 147 5 1 389 1 389 6.69e-157 447
MS.gene07963.t1 MTR_4g088535 60.892 381 130 3 4 384 5 366 1.08e-156 446
MS.gene07963.t1 MTR_7g050810 59.021 388 152 3 6 387 16 402 4.53e-156 446
MS.gene07963.t1 MTR_3g101050 60.253 395 127 7 3 388 24 397 3.51e-148 425
MS.gene07963.t1 MTR_3g015620 56.186 388 139 5 6 387 16 378 3.49e-136 394
MS.gene07963.t1 MTR_3g102920 56.667 390 126 7 4 387 56 408 2.45e-135 393
MS.gene07963.t1 MTR_3g101200 53.435 393 149 7 1 387 26 390 2.23e-126 370
MS.gene07963.t1 MTR_3g100995 67.059 255 80 3 134 387 11 262 4.93e-121 351
MS.gene07963.t1 MTR_3g101190 48.907 366 125 4 24 389 9 312 5.47e-114 335
MS.gene07963.t1 MTR_3g018747 66.154 260 71 4 130 387 9 253 5.06e-113 330
MS.gene07963.t1 MTR_7g050830 52.381 315 116 4 6 298 16 318 2.32e-106 316
MS.gene07963.t1 MTR_3g100010 52.733 311 98 3 31 308 42 336 2.29e-100 301
MS.gene07963.t1 MTR_3g015760 58.889 270 102 5 122 387 15 279 3.49e-97 291
MS.gene07963.t1 MTR_3g099970 68.020 197 45 2 130 326 20 198 1.26e-89 269
MS.gene07963.t1 MTR_3g111160 65.766 222 71 5 171 389 1 220 5.22e-88 265
MS.gene07963.t1 MTR_2g046410 66.667 207 60 3 187 387 144 347 2.10e-87 268
MS.gene07963.t1 MTR_3g100520 60.909 220 74 2 171 389 1 209 2.55e-87 263
MS.gene07963.t1 MTR_3g101110 55.187 241 73 5 130 363 68 280 2.80e-77 240
MS.gene07963.t1 MTR_3g114310 38.776 392 216 11 11 386 24 407 2.88e-77 244
MS.gene07963.t1 MTR_3g111150 55.932 177 54 1 8 184 1 153 1.31e-60 193
MS.gene07963.t1 MTR_3g101020 56.216 185 53 3 204 387 1 158 8.66e-60 191
MS.gene07963.t1 MTR_3g101150 63.924 158 50 3 236 387 1 157 1.55e-59 190
MS.gene07963.t1 MTR_3g102870 58.750 160 60 2 193 347 1 159 5.77e-54 176
MS.gene07963.t1 MTR_3g100990 60.769 130 51 0 5 134 4 133 8.14e-48 170
MS.gene07963.t1 MTR_4g093550 58.333 84 35 0 6 89 6 89 4.41e-24 95.5
MS.gene07963.t1 MTR_6g046890 60.000 70 28 0 14 83 7 76 1.79e-18 81.6
MS.gene07963.t1 MTR_3g101080 91.429 35 3 0 345 379 5 39 1.30e-17 77.4
MS.gene07963.t1 MTR_3g101140 57.143 70 25 2 324 389 48 116 4.06e-15 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07963.t1 AT1G47710 54.381 388 171 5 5 387 4 390 1.99e-141 408
MS.gene07963.t1 AT1G47710 54.381 388 171 5 5 387 31 417 1.33e-140 407
MS.gene07963.t1 AT3G45220 47.462 394 186 7 6 386 5 390 1.07e-118 350
MS.gene07963.t1 AT2G25240 48.861 395 171 11 6 386 5 382 5.34e-118 348
MS.gene07963.t1 AT2G26390 47.880 401 170 11 6 386 5 386 7.03e-117 345
MS.gene07963.t1 AT1G64030 42.821 390 193 7 5 386 4 371 7.94e-101 304
MS.gene07963.t1 AT2G14540 43.188 389 191 7 5 386 32 397 2.02e-97 296
MS.gene07963.t1 AT1G62170 42.473 372 176 6 28 388 89 433 2.17e-96 295
MS.gene07963.t1 AT2G35580 41.388 389 186 9 5 386 18 371 2.56e-89 274
MS.gene07963.t1 AT1G62170 39.012 405 176 7 28 388 89 466 2.83e-89 277
MS.gene07963.t1 AT1G64010 48.165 218 88 6 171 386 1 195 6.92e-59 190
MS.gene07963.t1 AT1G64010 48.276 203 80 6 186 386 2 181 1.26e-52 173
MS.gene07963.t1 AT1G63280 53.913 115 49 2 130 242 8 120 4.01e-35 125
MS.gene07963.t1 AT1G62160 38.308 201 97 6 193 388 42 220 2.53e-33 124
MS.gene07963.t1 AT1G51330 47.748 111 55 2 129 236 30 140 2.51e-26 104
MS.gene07963.t1 AT1G64020 33.333 117 75 3 7 121 6 121 6.16e-13 65.5

Find 90 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAGACTTGTGAAATATTT+TGG 0.124070 6.3:-30872045 None:intergenic
TGACCAATGAAATTAATTTA+TGG 0.167404 6.3:+30871481 MS.gene07963:CDS
CCAAGGTTCAATGTTTCATT+TGG 0.241843 6.3:+30871915 MS.gene07963:CDS
TCATCTTGGCCTAGTTTATA+AGG 0.304109 6.3:-30871750 None:intergenic
GACCAATGAAATTAATTTAT+GGG 0.305437 6.3:+30871482 MS.gene07963:CDS
AGCCCATAAATTAATTTCAT+TGG 0.326511 6.3:-30871484 None:intergenic
AATAGAAACGTACCTTGTTC+TGG 0.335113 6.3:-30870936 None:intergenic
CAAGGTTCAATGTTTCATTT+GGG 0.365934 6.3:+30871916 MS.gene07963:CDS
TATTTCTAATTAAAGAAGAT+TGG 0.368668 6.3:+30872177 MS.gene07963:CDS
CTTAAACTTCCTTATAAACT+AGG 0.403498 6.3:+30871741 MS.gene07963:CDS
TCTGATATGCTGAAGGAGTT+AGG 0.408689 6.3:+30871948 MS.gene07963:CDS
CCCTCTACTTCAAAGGAGTA+TGG 0.413172 6.3:+30871589 MS.gene07963:CDS
AAAGGAGTTGAGTTGATTGA+TGG 0.417224 6.3:-30870749 None:intergenic
ACCGGAGCAATCCTCTTTGT+TGG 0.418802 6.3:+30872200 MS.gene07963:CDS
GAGAGGCCATCTTTCGCATC+TGG 0.419845 6.3:-30871801 None:intergenic
CGAGGCCCGCCTGTGAGATA+AGG 0.420462 6.3:-30870805 None:intergenic
GAAAGATGGCCTCTCAGCTT+TGG 0.432705 6.3:+30871809 MS.gene07963:CDS
TTGTTTAAAGAAGAGATGTT+TGG 0.447288 6.3:-30870611 None:intergenic
AGCAATCCTCTTTGTTGGAC+AGG 0.457539 6.3:+30872205 MS.gene07963:CDS
ATCTGTTTACAAAGCCAACT+TGG 0.459177 6.3:+30870900 MS.gene07963:CDS
TAGAGAATTGACGGTCATCT+TGG 0.462332 6.3:-30871764 None:intergenic
CATCATCGCTGCCGGCTCTG+AGG 0.467291 6.3:+30870684 MS.gene07963:CDS
ATTCTTCCAGATGCGAAAGA+TGG 0.468275 6.3:+30871795 MS.gene07963:CDS
GAGGCCCGCCTGTGAGATAA+GGG 0.471132 6.3:-30870804 None:intergenic
GTCAGACCTCCGGGAGAGAA+AGG 0.477684 6.3:-30871981 None:intergenic
TAAAGTACATAGAGAATTGA+CGG 0.488589 6.3:-30871773 None:intergenic
TCTTTAATTAGAAATAAGAA+TGG 0.489113 6.3:-30872170 None:intergenic
ATCATCGCTGCCGGCTCTGA+GGG 0.489637 6.3:+30870685 MS.gene07963:CDS
TCTCAATGGCAGCTCAATCA+AGG 0.494273 6.3:+30871659 MS.gene07963:CDS
CTTTAATTAGAAATAAGAAT+GGG 0.499662 6.3:-30872169 None:intergenic
AGATGACAGAATTTGTTTGA+AGG 0.503106 6.3:-30870881 None:intergenic
GACAGAATTTGTTTGAAGGT+AGG 0.503242 6.3:-30870877 None:intergenic
TCTATTTCTCAAGTTCAAGT+AGG 0.508265 6.3:+30871879 MS.gene07963:CDS
CTAATTAAAGAAGATTGGAC+CGG 0.510289 6.3:+30872182 MS.gene07963:CDS
GTTGATTGATGGATTTAGAG+TGG 0.516262 6.3:-30870738 None:intergenic
GACGAGGTGGACCAAAGGAT+TGG 0.517152 6.3:-30872121 None:intergenic
TCCTTTCATGACCAGCATGA+AGG 0.520615 6.3:+30871683 MS.gene07963:CDS
CAATATATCCGTGCTTCCGA+TGG 0.522007 6.3:+30871708 MS.gene07963:CDS
CTGTGTGGTACCCTCAGAGC+CGG 0.522370 6.3:-30870695 None:intergenic
GTTAAGCTGTTGACCGCCCC+TGG 0.522777 6.3:-30871546 None:intergenic
TTTAAGTACTTTAAAACCAT+CGG 0.527283 6.3:-30871724 None:intergenic
ATTCTCAGCATCATCGCTGC+CGG 0.530249 6.3:+30870676 MS.gene07963:CDS
ACCATACTCCTTTGAAGTAG+AGG 0.534276 6.3:-30871590 None:intergenic
GTTAAAGAAGTTATTTCACC+AGG 0.535374 6.3:+30871528 MS.gene07963:CDS
GAAATCAACGGAAGCCAAGT+TGG 0.539046 6.3:-30870914 None:intergenic
TTCATCATAGTGAATGAAGA+AGG 0.540566 6.3:+30872065 MS.gene07963:CDS
TATCCTTTCCGTCGTACTCA+CGG 0.544427 6.3:+30870780 MS.gene07963:CDS
CCATACTCCTTTGAAGTAGA+GGG 0.548242 6.3:-30871589 None:intergenic
GCTAATGCCCTCTACTTCAA+AGG 0.549267 6.3:+30871582 MS.gene07963:CDS
TGTTTGAAGGTAGGTTGAAG+AGG 0.552542 6.3:-30870868 None:intergenic
CCAAATGAAACATTGAACCT+TGG 0.554304 6.3:-30871915 None:intergenic
TGGACCAAAGGATTGGCAAA+AGG 0.556762 6.3:-30872114 None:intergenic
TGAAACTTCTGATATGCTGA+AGG 0.565713 6.3:+30871941 MS.gene07963:CDS
TCCTTCATGCTGGTCATGAA+AGG 0.565992 6.3:-30871684 None:intergenic
TTCCGTTGATTTCCAGAACA+AGG 0.568196 6.3:+30870924 MS.gene07963:CDS
TCCAACAAAGAGGATTGCTC+CGG 0.578306 6.3:-30872201 None:intergenic
GATATATTGATCCTTCATGC+TGG 0.580830 6.3:-30871694 None:intergenic
CTTTAAAACCATCGGAAGCA+CGG 0.585513 6.3:-30871716 None:intergenic
TTGTTCAATCCAAACACTAT+CGG 0.587103 6.3:-30870839 None:intergenic
GTGAAATAACTTCTTTAACA+AGG 0.594053 6.3:-30871524 None:intergenic
GGTCCGTGAGTACGACGGAA+AGG 0.596845 6.3:-30870783 None:intergenic
AGAAGTTATTTCACCAGGGG+CGG 0.597921 6.3:+30871533 MS.gene07963:CDS
GATTGATGGATTTAGAGTGG+AGG 0.601249 6.3:-30870735 None:intergenic
AAAGGATTGGCAAAAGGCGT+AGG 0.604074 6.3:-30872108 None:intergenic
ACGGACCCTTATCTCACAGG+CGG 0.605806 6.3:+30870799 MS.gene07963:CDS
CTCACGGACCCTTATCTCAC+AGG 0.609329 6.3:+30870796 MS.gene07963:CDS
TAGTGTAATTACGCAGCAAG+AGG 0.609538 6.3:-30872236 None:intergenic
CGGACCCTTATCTCACAGGC+GGG 0.612436 6.3:+30870800 MS.gene07963:CDS
GGAAAGGATATGAGACGCAA+AGG 0.618163 6.3:-30870767 None:intergenic
CGAGCACCTGTCCAACAAAG+AGG 0.619877 6.3:-30872211 None:intergenic
TAAAGAAGTTATTTCACCAG+GGG 0.624921 6.3:+30871530 MS.gene07963:CDS
ACAAAGTCTAGTTGAGGACG+AGG 0.625288 6.3:-30872137 None:intergenic
AGAAGGCACTGAAGCTGCTG+CGG 0.627362 6.3:+30872082 MS.gene07963:CDS
AAACACTATCGGCAAAAGAG+AGG 0.630018 6.3:-30870828 None:intergenic
TGATTGAGCTGCCATTGAGA+AGG 0.630337 6.3:-30871656 None:intergenic
TTGAGGACGAGGTGGACCAA+AGG 0.632392 6.3:-30872126 None:intergenic
TTAAAGAAGTTATTTCACCA+GGG 0.632918 6.3:+30871529 MS.gene07963:CDS
AGAATAATTTGAATCGAGAG+AGG 0.633850 6.3:-30870658 None:intergenic
TACCTTGTTCTGGAAATCAA+CGG 0.635038 6.3:-30870926 None:intergenic
TAATTAGAAATAAGAATGGG+TGG 0.638436 6.3:-30872166 None:intergenic
ATAAGGGTCCGTGAGTACGA+CGG 0.655078 6.3:-30870788 None:intergenic
AGTGTAATTACGCAGCAAGA+GGG 0.656663 6.3:-30872235 None:intergenic
GGTTGATCATTGATTCACGA+CGG 0.660933 6.3:-30870564 None:intergenic
TATGCTGAAGGAGTTAGGAG+TGG 0.666483 6.3:+30871953 MS.gene07963:CDS
TAGGTGACTTCAGAATTCCA+AGG 0.671150 6.3:+30871898 MS.gene07963:CDS
TCTTCTCAACCAAAGCTGAG+AGG 0.678042 6.3:-30871818 None:intergenic
GTCGAGAAGTTGTTGCTGTG+TGG 0.694260 6.3:-30870710 None:intergenic
AAGTCTAGTTGAGGACGAGG+TGG 0.694397 6.3:-30872134 None:intergenic
TCAGCTACAAAGTCTAGTTG+AGG 0.698934 6.3:-30872143 None:intergenic
CTATCGGCAAAAGAGAGGCG+AGG 0.702993 6.3:-30870823 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTTGATATGATTTTAT+AGG + chr6.3:30871449-30871468 MS.gene07963:intron 10.0%
!! CTTTAATTAGAAATAAGAAT+GGG - chr6.3:30872172-30872191 None:intergenic 15.0%
!! TCTTTAATTAGAAATAAGAA+TGG - chr6.3:30872173-30872192 None:intergenic 15.0%
!!! TATTTCTAATTAAAGAAGAT+TGG + chr6.3:30872177-30872196 MS.gene07963:CDS 15.0%
!! GACCAATGAAATTAATTTAT+GGG + chr6.3:30871482-30871501 MS.gene07963:CDS 20.0%
!! TGACCAATGAAATTAATTTA+TGG + chr6.3:30871481-30871500 MS.gene07963:CDS 20.0%
!!! TTTAAGTACTTTAAAACCAT+CGG - chr6.3:30871727-30871746 None:intergenic 20.0%
! AGCCCATAAATTAATTTCAT+TGG - chr6.3:30871487-30871506 None:intergenic 25.0%
! ATGCATTTGAATAACATTCA+TGG - chr6.3:30871230-30871249 None:intergenic 25.0%
! CTTAAACTTCCTTATAAACT+AGG + chr6.3:30871741-30871760 MS.gene07963:CDS 25.0%
! GTAAAGGTTATCACTAAATT+AGG - chr6.3:30871030-30871049 None:intergenic 25.0%
! GTGAAATAACTTCTTTAACA+AGG - chr6.3:30871527-30871546 None:intergenic 25.0%
! GTGAAGTTAAATCCATTATA+GGG - chr6.3:30870980-30870999 None:intergenic 25.0%
! TAAAGTACATAGAGAATTGA+CGG - chr6.3:30871776-30871795 None:intergenic 25.0%
! TAATTAGAAATAAGAATGGG+TGG - chr6.3:30872169-30872188 None:intergenic 25.0%
! TGTGAAGTTAAATCCATTAT+AGG - chr6.3:30870981-30871000 None:intergenic 25.0%
! TTGTTTAAAGAAGAGATGTT+TGG - chr6.3:30870614-30870633 None:intergenic 25.0%
!! GAAAGACTTGTGAAATATTT+TGG - chr6.3:30872048-30872067 None:intergenic 25.0%
!! TTAAAGAAGTTATTTCACCA+GGG + chr6.3:30871529-30871548 MS.gene07963:CDS 25.0%
!! TTTCTAGCATTCAACTTATT+AGG + chr6.3:30871315-30871334 MS.gene07963:intron 25.0%
AGAATAATTTGAATCGAGAG+AGG - chr6.3:30870661-30870680 None:intergenic 30.0%
ATTTCTGATCGTATAACTTC+AGG + chr6.3:30871133-30871152 MS.gene07963:intron 30.0%
CAAGGTTCAATGTTTCATTT+GGG + chr6.3:30871916-30871935 MS.gene07963:CDS 30.0%
CTAATTAAAGAAGATTGGAC+CGG + chr6.3:30872182-30872201 MS.gene07963:CDS 30.0%
TTCATCATAGTGAATGAAGA+AGG + chr6.3:30872065-30872084 MS.gene07963:CDS 30.0%
TTGTTCAATCCAAACACTAT+CGG - chr6.3:30870842-30870861 None:intergenic 30.0%
! AGATGACAGAATTTGTTTGA+AGG - chr6.3:30870884-30870903 None:intergenic 30.0%
! GTTAAAGAAGTTATTTCACC+AGG + chr6.3:30871528-30871547 MS.gene07963:CDS 30.0%
! TAAAGAAGTTATTTCACCAG+GGG + chr6.3:30871530-30871549 MS.gene07963:CDS 30.0%
! TATGATTTTCACCTTCTCAA+TGG + chr6.3:30871645-30871664 MS.gene07963:CDS 30.0%
! TCTATTTCTCAAGTTCAAGT+AGG + chr6.3:30871879-30871898 MS.gene07963:CDS 30.0%
!! CTTAGTCTTGAGTTACAAAA+AGG + chr6.3:30871262-30871281 MS.gene07963:intron 30.0%
!!! ATACTTTTTTTGTCAACCCT+CGG - chr6.3:30871096-30871115 None:intergenic 30.0%
AACTCAAGACTAAGACGTAT+AGG - chr6.3:30871256-30871275 None:intergenic 35.0%
AATAGAAACGTACCTTGTTC+TGG - chr6.3:30870939-30870958 None:intergenic 35.0%
ACTCAAGACTAAGACGTATA+GGG - chr6.3:30871255-30871274 None:intergenic 35.0%
ATACGATCAGAAATCAACGA+AGG - chr6.3:30871127-30871146 None:intergenic 35.0%
ATCTGTTTACAAAGCCAACT+TGG + chr6.3:30870900-30870919 MS.gene07963:CDS 35.0%
CCAAATGAAACATTGAACCT+TGG - chr6.3:30871918-30871937 None:intergenic 35.0%
CCAAGGTTCAATGTTTCATT+TGG + chr6.3:30871915-30871934 MS.gene07963:CDS 35.0%
GATATATTGATCCTTCATGC+TGG - chr6.3:30871697-30871716 None:intergenic 35.0%
GTTAAATCCATTATAGGGCA+TGG - chr6.3:30870975-30870994 None:intergenic 35.0%
TACGATCAGAAATCAACGAA+GGG - chr6.3:30871126-30871145 None:intergenic 35.0%
TCATCTTGGCCTAGTTTATA+AGG - chr6.3:30871753-30871772 None:intergenic 35.0%
TGAAACTTCTGATATGCTGA+AGG + chr6.3:30871941-30871960 MS.gene07963:CDS 35.0%
TGGGCTGAAAAAGAAACAAA+TGG + chr6.3:30871501-30871520 MS.gene07963:CDS 35.0%
! AAAAATGGTTGACTCTGTTG+AGG + chr6.3:30872004-30872023 MS.gene07963:CDS 35.0%
! GACAGAATTTGTTTGAAGGT+AGG - chr6.3:30870880-30870899 None:intergenic 35.0%
!! AAAGGAGTTGAGTTGATTGA+TGG - chr6.3:30870752-30870771 None:intergenic 35.0%
!! GTTGATTGATGGATTTAGAG+TGG - chr6.3:30870741-30870760 None:intergenic 35.0%
!! TACCTTGTTCTGGAAATCAA+CGG - chr6.3:30870929-30870948 None:intergenic 35.0%
!! TGAGTTCTTTTTCACAAGTG+TGG - chr6.3:30871391-30871410 None:intergenic 35.0%
!! TTTTGAGTGAAACGTTGGTT+TGG - chr6.3:30870588-30870607 None:intergenic 35.0%
AAACACTATCGGCAAAAGAG+AGG - chr6.3:30870831-30870850 None:intergenic 40.0%
ACGATCAGAAATCAACGAAG+GGG - chr6.3:30871125-30871144 None:intergenic 40.0%
AGAAAAGGGGCTTAGTAATC+CGG - chr6.3:30871065-30871084 None:intergenic 40.0%
ATTCTTCCAGATGCGAAAGA+TGG + chr6.3:30871795-30871814 MS.gene07963:CDS 40.0%
CCTCGGATAACTAGAGAAAA+GGG - chr6.3:30871079-30871098 None:intergenic 40.0%
CCTTTACTTACCTTGAACTC+CGG + chr6.3:30871043-30871062 MS.gene07963:intron 40.0%
CTCGGATAACTAGAGAAAAG+GGG - chr6.3:30871078-30871097 None:intergenic 40.0%
TAGAGAATTGACGGTCATCT+TGG - chr6.3:30871767-30871786 None:intergenic 40.0%
TAGGTGACTTCAGAATTCCA+AGG + chr6.3:30871898-30871917 MS.gene07963:CDS 40.0%
TCAGCTACAAAGTCTAGTTG+AGG - chr6.3:30872146-30872165 None:intergenic 40.0%
TCTGATATGCTGAAGGAGTT+AGG + chr6.3:30871948-30871967 MS.gene07963:CDS 40.0%
! CCTTTTCTCTAGTTATCCGA+GGG + chr6.3:30871077-30871096 MS.gene07963:intron 40.0%
! TCTCTTTTGCCGATAGTGTT+TGG + chr6.3:30870830-30870849 MS.gene07963:CDS 40.0%
! TGTTTGAAGGTAGGTTGAAG+AGG - chr6.3:30870871-30870890 None:intergenic 40.0%
!! AACCATTTTTGTCAGACCTC+CGG - chr6.3:30871994-30872013 None:intergenic 40.0%
!! ACCATACTCCTTTGAAGTAG+AGG - chr6.3:30871593-30871612 None:intergenic 40.0%
!! CCATACTCCTTTGAAGTAGA+GGG - chr6.3:30871592-30871611 None:intergenic 40.0%
!! CTTTAAAACCATCGGAAGCA+CGG - chr6.3:30871719-30871738 None:intergenic 40.0%
!! GATTGATGGATTTAGAGTGG+AGG - chr6.3:30870738-30870757 None:intergenic 40.0%
!! GGTTGATCATTGATTCACGA+CGG - chr6.3:30870567-30870586 None:intergenic 40.0%
!! TTCCGTTGATTTCCAGAACA+AGG + chr6.3:30870924-30870943 MS.gene07963:CDS 40.0%
ACAAAGTCTAGTTGAGGACG+AGG - chr6.3:30872140-30872159 None:intergenic 45.0%
AGCAATCCTCTTTGTTGGAC+AGG + chr6.3:30872205-30872224 MS.gene07963:CDS 45.0%
CAATATATCCGTGCTTCCGA+TGG + chr6.3:30871708-30871727 MS.gene07963:CDS 45.0%
CCACAATCCATGCCCTATAA+TGG + chr6.3:30870965-30870984 MS.gene07963:intron 45.0%
CCCTCGGATAACTAGAGAAA+AGG - chr6.3:30871080-30871099 None:intergenic 45.0%
CCCTCTACTTCAAAGGAGTA+TGG + chr6.3:30871589-30871608 MS.gene07963:CDS 45.0%
CCGGAGTTCAAGGTAAGTAA+AGG - chr6.3:30871046-30871065 None:intergenic 45.0%
GAAATCAACGGAAGCCAAGT+TGG - chr6.3:30870917-30870936 None:intergenic 45.0%
GCTAATGCCCTCTACTTCAA+AGG + chr6.3:30871582-30871601 MS.gene07963:CDS 45.0%
GCTTAGTAATCCGGAGTTCA+AGG - chr6.3:30871056-30871075 None:intergenic 45.0%
GGAAAGGATATGAGACGCAA+AGG - chr6.3:30870770-30870789 None:intergenic 45.0%
TATCCTTTCCGTCGTACTCA+CGG + chr6.3:30870780-30870799 MS.gene07963:CDS 45.0%
TATGCTGAAGGAGTTAGGAG+TGG + chr6.3:30871953-30871972 MS.gene07963:CDS 45.0%
TCCAACAAAGAGGATTGCTC+CGG - chr6.3:30872204-30872223 None:intergenic 45.0%
TCCTTCATGCTGGTCATGAA+AGG - chr6.3:30871687-30871706 None:intergenic 45.0%
TCCTTTCATGACCAGCATGA+AGG + chr6.3:30871683-30871702 MS.gene07963:CDS 45.0%
TCTCAATGGCAGCTCAATCA+AGG + chr6.3:30871659-30871678 MS.gene07963:CDS 45.0%
TCTTCTCAACCAAAGCTGAG+AGG - chr6.3:30871821-30871840 None:intergenic 45.0%
TGATTGAGCTGCCATTGAGA+AGG - chr6.3:30871659-30871678 None:intergenic 45.0%
! AAAGGATTGGCAAAAGGCGT+AGG - chr6.3:30872111-30872130 None:intergenic 45.0%
! AGAAGTTATTTCACCAGGGG+CGG + chr6.3:30871533-30871552 MS.gene07963:CDS 45.0%
! CCATTATAGGGCATGGATTG+TGG - chr6.3:30870968-30870987 None:intergenic 45.0%
! CCCTTTTCTCTAGTTATCCG+AGG + chr6.3:30871076-30871095 MS.gene07963:intron 45.0%
! TACGCCTTTTGCCAATCCTT+TGG + chr6.3:30872110-30872129 MS.gene07963:CDS 45.0%
! TGGACCAAAGGATTGGCAAA+AGG - chr6.3:30872117-30872136 None:intergenic 45.0%
!! ACCATTTTTGTCAGACCTCC+GGG - chr6.3:30871993-30872012 None:intergenic 45.0%
!! CTTTTTCACAAGTGTGGCAG+TGG - chr6.3:30871385-30871404 None:intergenic 45.0%
!! GGCGATTTTGAGTGAAACGT+TGG - chr6.3:30870593-30870612 None:intergenic 45.0%
!! GTGGTTTTACCTTTCTCTCC+CGG + chr6.3:30871972-30871991 MS.gene07963:CDS 45.0%
AAGTCTAGTTGAGGACGAGG+TGG - chr6.3:30872137-30872156 None:intergenic 50.0%
ACCGGAGCAATCCTCTTTGT+TGG + chr6.3:30872200-30872219 MS.gene07963:CDS 50.0%
ATAAGGGTCCGTGAGTACGA+CGG - chr6.3:30870791-30870810 None:intergenic 50.0%
ATTCTCAGCATCATCGCTGC+CGG + chr6.3:30870676-30870695 MS.gene07963:CDS 50.0%
GAAAGATGGCCTCTCAGCTT+TGG + chr6.3:30871809-30871828 MS.gene07963:CDS 50.0%
GTCGAGAAGTTGTTGCTGTG+TGG - chr6.3:30870713-30870732 None:intergenic 50.0%
TCCCGGAGGTCTGACAAAAA+TGG + chr6.3:30871989-30872008 MS.gene07963:CDS 50.0%
! GTTTTACCTTTCTCTCCCGG+AGG + chr6.3:30871975-30871994 MS.gene07963:CDS 50.0%
ACGGACCCTTATCTCACAGG+CGG + chr6.3:30870799-30870818 MS.gene07963:CDS 55.0%
CGAGCACCTGTCCAACAAAG+AGG - chr6.3:30872214-30872233 None:intergenic 55.0%
CTATCGGCAAAAGAGAGGCG+AGG - chr6.3:30870826-30870845 None:intergenic 55.0%
CTCACGGACCCTTATCTCAC+AGG + chr6.3:30870796-30870815 MS.gene07963:CDS 55.0%
GACGAGGTGGACCAAAGGAT+TGG - chr6.3:30872124-30872143 None:intergenic 55.0%
GAGAGGCCATCTTTCGCATC+TGG - chr6.3:30871804-30871823 None:intergenic 55.0%
TTGAGGACGAGGTGGACCAA+AGG - chr6.3:30872129-30872148 None:intergenic 55.0%
!! AGAAGGCACTGAAGCTGCTG+CGG + chr6.3:30872082-30872101 MS.gene07963:CDS 55.0%
CGGACCCTTATCTCACAGGC+GGG + chr6.3:30870800-30870819 MS.gene07963:CDS 60.0%
CTGTGTGGTACCCTCAGAGC+CGG - chr6.3:30870698-30870717 None:intergenic 60.0%
GAGGCCCGCCTGTGAGATAA+GGG - chr6.3:30870807-30870826 None:intergenic 60.0%
GGTCCGTGAGTACGACGGAA+AGG - chr6.3:30870786-30870805 None:intergenic 60.0%
GTCAGACCTCCGGGAGAGAA+AGG - chr6.3:30871984-30872003 None:intergenic 60.0%
GTTAAGCTGTTGACCGCCCC+TGG - chr6.3:30871549-30871568 None:intergenic 60.0%
!! ATCATCGCTGCCGGCTCTGA+GGG + chr6.3:30870685-30870704 MS.gene07963:CDS 60.0%
CGAGGCCCGCCTGTGAGATA+AGG - chr6.3:30870808-30870827 None:intergenic 65.0%
!! CATCATCGCTGCCGGCTCTG+AGG + chr6.3:30870684-30870703 MS.gene07963:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 30870556 30872250 30870556 ID=MS.gene07963
chr6.3 mRNA 30870556 30872250 30870556 ID=MS.gene07963.t1;Parent=MS.gene07963
chr6.3 exon 30870556 30870945 30870556 ID=MS.gene07963.t1.exon1;Parent=MS.gene07963.t1
chr6.3 CDS 30870556 30870945 30870556 ID=cds.MS.gene07963.t1;Parent=MS.gene07963.t1
chr6.3 exon 30871471 30872250 30871471 ID=MS.gene07963.t1.exon2;Parent=MS.gene07963.t1
chr6.3 CDS 30871471 30872250 30871471 ID=cds.MS.gene07963.t1;Parent=MS.gene07963.t1
Gene Sequence

>MS.gene07963

ATGGAGTTCCGTCGTGAATCAATGATCAACCAAACCAACGTTTCACTCAAAATCGCCAAACATCTCTTCTTTAAACAATCTAACAGCAACATTGTGTTTTCACCTCTCTCGATTCAAATTATTCTCAGCATCATCGCTGCCGGCTCTGAGGGTACCACACAGCAACAACTTCTCGACTTCCTCCACTCTAAATCCATCAATCAACTCAACTCCTTTGCGTCTCATATCCTTTCCGTCGTACTCACGGACCCTTATCTCACAGGCGGGCCTCGCCTCTCTTTTGCCGATAGTGTTTGGATTGAACAATCACTTCCTCTTCAACCTACCTTCAAACAAATTCTGTCATCTGTTTACAAAGCCAACTTGGCTTCCGTTGATTTCCAGAACAAGGTACGTTTCTATTTTTTCACCACAATCCATGCCCTATAATGGATTTAACTTCACAAACAATTAGTTTATTGTATTTCATAACCTAATTTAGTGATAACCTTTACTTACCTTGAACTCCGGATTACTAAGCCCCTTTTCTCTAGTTATCCGAGGGTTGACAAAAAAAGTATAGATAACCCCTTCGTTGATTTCTGATCGTATAACTTCAGGTCATTAAATGTATAAAGCTAATAATTCACTCTTTTAACACACACACACACTTTAAATTGATTAAAGCAATTCCATGAATGTTATTCAAATGCATCACCCTATACGTCTTAGTCTTGAGTTACAAAAAGGAATGCAAAACAACATTTTTGTCATTATTATTTTCTAGCATTCAACTTATTAGGCAACATAACGATTGATAATTAGACTAACAAAAAGTTAAATTCTTCCACTGCCACACTTGTGAAAAAGAACTCAACTTATCTATTTGCAATTCTTATTTTTTATTTTTTTTTAAAATTTGATATGATTTTATAGGCTGTTGAAGTGACCAATGAAATTAATTTATGGGCTGAAAAAGAAACAAATGGCCTTGTTAAAGAAGTTATTTCACCAGGGGCGGTCAACAGCTTAACGAGACTCATCTTTGCTAATGCCCTCTACTTCAAAGGAGTATGGTCTAAGAATTTTGATGCTTCAAAAACGAAAGATTATGATTTTCACCTTCTCAATGGCAGCTCAATCAAGGTTCCTTTCATGACCAGCATGAAGGATCAATATATCCGTGCTTCCGATGGTTTTAAAGTACTTAAACTTCCTTATAAACTAGGCCAAGATGACCGTCAATTCTCTATGTACTTTATTCTTCCAGATGCGAAAGATGGCCTCTCAGCTTTGGTTGAGAAGATGACTTCTGAATCTGAGTCACTACACGACAAGCTTCATTCTATTTCTCAAGTTCAAGTAGGTGACTTCAGAATTCCAAGGTTCAATGTTTCATTTGGGTTTGAAACTTCTGATATGCTGAAGGAGTTAGGAGTGGTTTTACCTTTCTCTCCCGGAGGTCTGACAAAAATGGTTGACTCTGTTGAGGATCAAAAGCTTTATGTTTCCAAAATATTTCACAAGTCTTTCATCATAGTGAATGAAGAAGGCACTGAAGCTGCTGCGGTAACCTACGCCTTTTGCCAATCCTTTGGTCCACCTCGTCCTCAACTAGACTTTGTAGCTGACCACCCATTCTTATTTCTAATTAAAGAAGATTGGACCGGAGCAATCCTCTTTGTTGGACAGGTGCTCGACCCTCTTGCTGCGTAA
Protein sequence

>MS.gene07963.t1

MEFRRESMINQTNVSLKIAKHLFFKQSNSNIVFSPLSIQIILSIIAAGSEGTTQQQLLDFLHSKSINQLNSFASHILSVVLTDPYLTGGPRLSFADSVWIEQSLPLQPTFKQILSSVYKANLASVDFQNKAVEVTNEINLWAEKETNGLVKEVISPGAVNSLTRLIFANALYFKGVWSKNFDASKTKDYDFHLLNGSSIKVPFMTSMKDQYIRASDGFKVLKLPYKLGQDDRQFSMYFILPDAKDGLSALVEKMTSESESLHDKLHSISQVQVGDFRIPRFNVSFGFETSDMLKELGVVLPFSPGGLTKMVDSVEDQKLYVSKIFHKSFIIVNEEGTEAAAVTYAFCQSFGPPRPQLDFVADHPFLFLIKEDWTGAILFVGQVLDPLAA