Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08203.t1 | XP_013449504.1 | 97.5 | 279 | 7 | 0 | 3 | 281 | 50 | 328 | 1.10E-152 | 549.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08203.t1 | Q9LU39 | 25.4 | 244 | 154 | 8 | 41 | 276 | 61 | 284 | 1.7e-10 | 68.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08203.t1 | A0A072U1J2 | 97.5 | 279 | 7 | 0 | 3 | 281 | 50 | 328 | 7.6e-153 | 549.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051838 | MS.gene08203 | 0.813348 | 2.68E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08203.t1 | MTR_7g085670 | 97.491 | 279 | 7 | 0 | 3 | 281 | 50 | 328 | 0.0 | 563 |
| MS.gene08203.t1 | MTR_7g085670 | 97.740 | 177 | 4 | 0 | 3 | 179 | 50 | 226 | 8.87e-126 | 358 |
| MS.gene08203.t1 | MTR_4g007990 | 28.571 | 245 | 149 | 12 | 36 | 268 | 135 | 365 | 1.92e-17 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08203.t1 | AT3G03890 | 76.357 | 258 | 61 | 0 | 20 | 277 | 62 | 319 | 3.59e-148 | 418 |
| MS.gene08203.t1 | AT3G03890 | 75.000 | 244 | 61 | 0 | 20 | 263 | 62 | 305 | 6.54e-138 | 391 |
| MS.gene08203.t1 | AT1G51560 | 27.626 | 257 | 136 | 12 | 36 | 268 | 141 | 371 | 1.10e-17 | 82.4 |
| MS.gene08203.t1 | AT3G21140 | 29.084 | 251 | 140 | 11 | 36 | 268 | 137 | 367 | 1.50e-17 | 82.0 |
Find 66 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACACAAATCGTACAACTTT+TGG | 0.244472 | 7.3:+22967660 | None:intergenic |
| TCCTAAATGTTCAGTGCTTT+TGG | 0.253580 | 7.3:-22968106 | MS.gene08203:CDS |
| GGCCATACGAGCTGCATATT+TGG | 0.255255 | 7.3:-22967835 | MS.gene08203:CDS |
| CTTTGCTGACATAATAGATT+TGG | 0.270171 | 7.3:-22966622 | MS.gene08203:CDS |
| CGAGACATCCCAATGCGTTT+TGG | 0.271589 | 7.3:-22967812 | MS.gene08203:CDS |
| GCCAAAAGCACTGAACATTT+AGG | 0.293730 | 7.3:+22968105 | None:intergenic |
| GGTGTTGCCACAGCTTTGTT+AGG | 0.347039 | 7.3:-22967636 | MS.gene08203:CDS |
| CGGTTATCCATCAGGATCTA+TGG | 0.347934 | 7.3:-22968531 | MS.gene08203:CDS |
| ATGAATCAGGTTGTTTCCTC+TGG | 0.356396 | 7.3:-22969639 | MS.gene08203:intron |
| TCAATTAATTCAAGCTCATC+AGG | 0.370693 | 7.3:-22969586 | MS.gene08203:intron |
| GGCTTGGAAAACTGAGCAAT+GGG | 0.383757 | 7.3:+22966915 | None:intergenic |
| GCCACAGCTTTGTTAGGATC+AGG | 0.395641 | 7.3:-22967630 | MS.gene08203:CDS |
| TCCTGAAGATAGGACTGATT+TGG | 0.404816 | 7.3:-22968076 | MS.gene08203:CDS |
| CAACTTGAGGCTTGGCAGCT+TGG | 0.406436 | 7.3:+22966118 | None:intergenic |
| ACAGTTCGAATTTCTTCAAC+TGG | 0.411436 | 7.3:+22969148 | None:intergenic |
| TCTTCGACTTCAGAGTTTAC+CGG | 0.413103 | 7.3:-22966966 | MS.gene08203:intron |
| TCGTCTAGGTTTCAATGTTA+AGG | 0.415391 | 7.3:-22966598 | MS.gene08203:intron |
| AAGTCGCTCACTGCTAATAT+AGG | 0.415949 | 7.3:+22968479 | None:intergenic |
| TGCTGATTTGTACTCATCTC+CGG | 0.430709 | 7.3:+22966947 | None:intergenic |
| TCTTACTTTCTATCTTCTGC+AGG | 0.436757 | 7.3:+22966273 | None:intergenic |
| TGGCTAGAGATCCTGAAGAT+AGG | 0.437357 | 7.3:-22968086 | MS.gene08203:CDS |
| GCAGCACTGGACCTCAGTTC+CGG | 0.448145 | 7.3:-22966742 | MS.gene08203:intron |
| AGGTACCTGAGTAGTGGATT+GGG | 0.448889 | 7.3:+22969845 | None:intergenic |
| TTATATTCAGGTACCTGAAA+AGG | 0.458927 | 7.3:-22967865 | MS.gene08203:intron |
| CTGTACTTTGCAGGACTTAG+CGG | 0.469481 | 7.3:-22968133 | MS.gene08203:intron |
| AAGTATGACGGTTATCCATC+AGG | 0.473161 | 7.3:-22968539 | MS.gene08203:CDS |
| CTCGTAATGAAGGTTGACTT+TGG | 0.474484 | 7.3:-22967708 | MS.gene08203:intron |
| GATTAATACCGCTACTGGCT+TGG | 0.477699 | 7.3:+22966899 | None:intergenic |
| AAAGTTACCCAAAACGCATT+GGG | 0.484421 | 7.3:+22967804 | None:intergenic |
| TTTCTATCTTCTGCAGGTCG+AGG | 0.484803 | 7.3:+22966279 | None:intergenic |
| GAGGTACCTGAGTAGTGGAT+TGG | 0.486138 | 7.3:+22969844 | None:intergenic |
| CGCCAAATATGCAGCTCGTA+TGG | 0.487531 | 7.3:+22967833 | None:intergenic |
| TTAGAGATTAATACCGCTAC+TGG | 0.492574 | 7.3:+22966894 | None:intergenic |
| CTAAAGCGATTGTGCAGCAC+TGG | 0.493445 | 7.3:-22966755 | MS.gene08203:CDS |
| TTGGTTCAATGCGTACAAAT+CGG | 0.494738 | 7.3:+22967679 | None:intergenic |
| CGACTTGGCAGTTCATTCAA+AGG | 0.496656 | 7.3:-22968462 | MS.gene08203:intron |
| TTCTATCTTCTGCAGGTCGA+GGG | 0.497692 | 7.3:+22966280 | None:intergenic |
| GACTTTGCATGTGATGCAAA+TGG | 0.502893 | 7.3:-22968506 | MS.gene08203:CDS |
| ACCAAATCAGTCCTATCTTC+AGG | 0.507307 | 7.3:+22968075 | None:intergenic |
| AAAAGTTACCCAAAACGCAT+TGG | 0.512742 | 7.3:+22967803 | None:intergenic |
| AAAGTTGTACGATTTGTGTC+AGG | 0.512754 | 7.3:-22967657 | MS.gene08203:CDS |
| AACAGAAACCTTCGAGAATG+TGG | 0.529578 | 7.3:+22969096 | None:intergenic |
| GTATCAATCAACTTGAGGCT+TGG | 0.543974 | 7.3:+22966110 | None:intergenic |
| TCTTCTGCAGGTCGAGGGAA+AGG | 0.546658 | 7.3:+22966285 | None:intergenic |
| TAGATGTATCAATCAACTTG+AGG | 0.555292 | 7.3:+22966105 | None:intergenic |
| ATAATAGATTTGGATCGTCT+AGG | 0.558053 | 7.3:-22966612 | MS.gene08203:CDS |
| GGTACCTGAAAAGGATAAAG+AGG | 0.559008 | 7.3:-22967856 | MS.gene08203:CDS |
| TGGCTTGGAAAACTGAGCAA+TGG | 0.563411 | 7.3:+22966914 | None:intergenic |
| TTCTTCCCAATCCACTACTC+AGG | 0.566362 | 7.3:-22969850 | MS.gene08203:intron |
| GTTCGAATTTCTTCAACTGG+TGG | 0.572856 | 7.3:+22969151 | None:intergenic |
| GACGCTCTCCACATTCTCGA+AGG | 0.577675 | 7.3:-22969104 | MS.gene08203:intron |
| TCCCACGTAGACTACGATCA+AGG | 0.587187 | 7.3:+22969125 | None:intergenic |
| AAATAGAGGTACCTGAGTAG+TGG | 0.589705 | 7.3:+22969839 | None:intergenic |
| CAGGTCGAGGGAAAGGCACA+CGG | 0.592459 | 7.3:+22966292 | None:intergenic |
| TATATTAGCAGTGAGCGACT+TGG | 0.593728 | 7.3:-22968477 | MS.gene08203:CDS |
| AAGTCAACCATAGATCCTGA+TGG | 0.598237 | 7.3:+22968524 | None:intergenic |
| ACAGCTTTGTTAGGATCAGG+AGG | 0.602593 | 7.3:-22967627 | MS.gene08203:intron |
| GTCCTTGATCGTAGTCTACG+TGG | 0.607414 | 7.3:-22969127 | MS.gene08203:CDS |
| TTTGACACGCAGAAGTATGA+CGG | 0.611261 | 7.3:-22968551 | MS.gene08203:intron |
| TCCTTGATCGTAGTCTACGT+GGG | 0.641535 | 7.3:-22969126 | MS.gene08203:CDS |
| AAGGGGACATACCGGAACTG+AGG | 0.652484 | 7.3:+22966731 | None:intergenic |
| TCCTGATCCTAACAAAGCTG+TGG | 0.652822 | 7.3:+22967629 | None:intergenic |
| TCGCACATGAACAAAGATCA+CGG | 0.675086 | 7.3:-22966786 | MS.gene08203:CDS |
| GATTTGGTGATCACTATCCA+CGG | 0.676849 | 7.3:-22968060 | MS.gene08203:CDS |
| GCTTGGAAAACTGAGCAATG+GGG | 0.731088 | 7.3:+22966916 | None:intergenic |
| TTACAAAGATAGCATCACCG+TGG | 0.791867 | 7.3:+22968043 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAACTGTAAATTATTA+TGG | - | chr7.3:22967022-22967041 | MS.gene08203:intron | 10.0% |
| !! | ATTTGATAAATAATAGTAAA+AGG | + | chr7.3:22968017-22968036 | None:intergenic | 10.0% |
| !! | CTATTGAATAATAATTAATT+GGG | - | chr7.3:22966196-22966215 | MS.gene08203:intron | 10.0% |
| !! | TATATTAAAAGAGAAAATTT+GGG | + | chr7.3:22969150-22969169 | None:intergenic | 10.0% |
| !! | TTATATTAAAAGAGAAAATT+TGG | + | chr7.3:22969151-22969170 | None:intergenic | 10.0% |
| !! | AAATATTATCATGTAAACAT+AGG | - | chr7.3:22968493-22968512 | MS.gene08203:CDS | 15.0% |
| !! | AATATTATCATGTAAACATA+GGG | - | chr7.3:22968494-22968513 | MS.gene08203:CDS | 15.0% |
| !! | ACTATTATTTATCAAATGAT+TGG | - | chr7.3:22968020-22968039 | MS.gene08203:intron | 15.0% |
| !! | CCAATTAATTATTATTCAAT+AGG | + | chr7.3:22966198-22966217 | None:intergenic | 15.0% |
| !! | CCTATTGAATAATAATTAAT+TGG | - | chr7.3:22966195-22966214 | MS.gene08203:intron | 15.0% |
| !!! | TATTTATTGCTTTTCTTTTA+GGG | - | chr7.3:22969805-22969824 | MS.gene08203:intron | 15.0% |
| !!! | TGAAATTTTGTTTTAGTAAT+TGG | - | chr7.3:22967360-22967379 | MS.gene08203:intron | 15.0% |
| !!! | TTTTAGTTAAGTTTTGATTT+TGG | + | chr7.3:22968645-22968664 | None:intergenic | 15.0% |
| !!! | TTTTTAACAATAAACTTTGA+GGG | + | chr7.3:22967567-22967586 | None:intergenic | 15.0% |
| !!! | TTTTTTAACAATAAACTTTG+AGG | + | chr7.3:22967568-22967587 | None:intergenic | 15.0% |
| !! | AAAAAAAAACAGCATATTGT+AGG | + | chr7.3:22969757-22969776 | None:intergenic | 20.0% |
| !! | AAGAAATAATGTATAACTAC+TGG | + | chr7.3:22967979-22967998 | None:intergenic | 20.0% |
| !! | AATAGGTTCAAAGAAAAAAA+GGG | + | chr7.3:22966181-22966200 | None:intergenic | 20.0% |
| !! | AATTGAATGTGTATAATATC+AGG | - | chr7.3:22966747-22966766 | MS.gene08203:CDS | 20.0% |
| !! | AATTTGTGAACTTGTATAAA+TGG | - | chr7.3:22967644-22967663 | MS.gene08203:CDS | 20.0% |
| !! | ATAATAGAATCATTATACGA+AGG | - | chr7.3:22968059-22968078 | MS.gene08203:CDS | 20.0% |
| !! | ATACACATGAAATTAACTTA+TGG | + | chr7.3:22968941-22968960 | None:intergenic | 20.0% |
| !! | TAAGTAAAAATACTGTCTAA+AGG | + | chr7.3:22969458-22969477 | None:intergenic | 20.0% |
| !! | TAATAGAATCATTATACGAA+GGG | - | chr7.3:22968060-22968079 | MS.gene08203:CDS | 20.0% |
| !! | TAATTAATTAATGTGATTCG+TGG | - | chr7.3:22966309-22966328 | MS.gene08203:CDS | 20.0% |
| !! | TTTAAAAATCACCTACAAAT+TGG | - | chr7.3:22969490-22969509 | MS.gene08203:intron | 20.0% |
| !!! | AAGATTGATTTATGTTAATG+GGG | - | chr7.3:22966770-22966789 | MS.gene08203:CDS | 20.0% |
| !!! | ATAATCATTTTTTTTTAGGC+TGG | - | chr7.3:22969635-22969654 | MS.gene08203:intron | 20.0% |
| !!! | ATTTTATTCCACTCATTAAA+AGG | + | chr7.3:22968472-22968491 | None:intergenic | 20.0% |
| !!! | CTATTTATTGCTTTTCTTTT+AGG | - | chr7.3:22969804-22969823 | MS.gene08203:intron | 20.0% |
| !!! | GAAGATTGATTTATGTTAAT+GGG | - | chr7.3:22966769-22966788 | MS.gene08203:CDS | 20.0% |
| !!! | TGCATAAAAAAGAGTATATA+AGG | - | chr7.3:22968810-22968829 | MS.gene08203:intron | 20.0% |
| !!! | TTTTATTCCACTCATTAAAA+GGG | + | chr7.3:22968471-22968490 | None:intergenic | 20.0% |
| ! | AAAAATACTGTCTAAAGGTA+TGG | + | chr7.3:22969453-22969472 | None:intergenic | 25.0% |
| ! | AAATAAAAGACAAGATGAGA+AGG | + | chr7.3:22967404-22967423 | None:intergenic | 25.0% |
| ! | AAATATCTTTCCATTACTTC+AGG | - | chr7.3:22968892-22968911 | MS.gene08203:intron | 25.0% |
| ! | AATAGAATCATTATACGAAG+GGG | - | chr7.3:22968061-22968080 | MS.gene08203:CDS | 25.0% |
| ! | ACTTCTACAAAAATCAATGA+AGG | + | chr7.3:22966544-22966563 | None:intergenic | 25.0% |
| ! | ATAGTCCTGAAATTATATTC+AGG | - | chr7.3:22968097-22968116 | MS.gene08203:CDS | 25.0% |
| ! | ATGTAAACTTGACATAAGAT+GGG | + | chr7.3:22966953-22966972 | None:intergenic | 25.0% |
| ! | ATTAAAAGAGAAAATTTGGG+TGG | + | chr7.3:22969147-22969166 | None:intergenic | 25.0% |
| ! | ATTAACTTATGGTTCATAGA+TGG | + | chr7.3:22968930-22968949 | None:intergenic | 25.0% |
| ! | ATTATAACTGTTAAGATGAC+CGG | + | chr7.3:22967755-22967774 | None:intergenic | 25.0% |
| ! | CAATAGGTTCAAAGAAAAAA+AGG | + | chr7.3:22966182-22966201 | None:intergenic | 25.0% |
| ! | CAGTGAAGATTTCAATTTAA+TGG | + | chr7.3:22967315-22967334 | None:intergenic | 25.0% |
| ! | GATTTCTTTATCCAATTTGT+AGG | + | chr7.3:22969504-22969523 | None:intergenic | 25.0% |
| ! | GTATATAGTATGATCAAGAA+AGG | - | chr7.3:22969278-22969297 | MS.gene08203:intron | 25.0% |
| ! | TCATACTATATACTGTACAA+CGG | + | chr7.3:22969271-22969290 | None:intergenic | 25.0% |
| !! | AAGATTAGATTTGACTTCAT+CGG | - | chr7.3:22967608-22967627 | MS.gene08203:intron | 25.0% |
| !! | GGAAGATTGATTTATGTTAA+TGG | - | chr7.3:22966768-22966787 | MS.gene08203:CDS | 25.0% |
| !! | TTTAGTTGTTGTTGTTCATA+GGG | + | chr7.3:22967243-22967262 | None:intergenic | 25.0% |
| !! | TTTTCAGAAAAGTTCATGTT+AGG | + | chr7.3:22968601-22968620 | None:intergenic | 25.0% |
| !!! | GCAATCTTTTAATTTGTTTG+TGG | + | chr7.3:22967798-22967817 | None:intergenic | 25.0% |
| !!! | TTTATTTTTAACATCACCAG+AGG | + | chr7.3:22966354-22966373 | None:intergenic | 25.0% |
| !!! | TTTTAGTTGTTGTTGTTCAT+AGG | + | chr7.3:22967244-22967263 | None:intergenic | 25.0% |
| AAATGAACTACTCGTAATGA+AGG | - | chr7.3:22968256-22968275 | MS.gene08203:intron | 30.0% | |
| AAGGGAAATGTTTCATACTA+TGG | + | chr7.3:22968453-22968472 | None:intergenic | 30.0% | |
| AGAAAAGTTCATGTTAGGAA+AGG | + | chr7.3:22968596-22968615 | None:intergenic | 30.0% | |
| AGCTATACAAATCAGTGTAA+GGG | + | chr7.3:22966911-22966930 | None:intergenic | 30.0% | |
| AGGTACCTGAATATAATTTC+AGG | + | chr7.3:22968105-22968124 | None:intergenic | 30.0% | |
| ATAATAGATTTGGATCGTCT+AGG | - | chr7.3:22969362-22969381 | MS.gene08203:intron | 30.0% | |
| ATCAAGAAATCAACAGCTTT+AGG | + | chr7.3:22968687-22968706 | None:intergenic | 30.0% | |
| CAGAGAAGTGAATTACAAAA+TGG | + | chr7.3:22966423-22966442 | None:intergenic | 30.0% | |
| CATACTATATACTGTACAAC+GGG | + | chr7.3:22969270-22969289 | None:intergenic | 30.0% | |
| CATGTAAACTTGACATAAGA+TGG | + | chr7.3:22966954-22966973 | None:intergenic | 30.0% | |
| CTAAATTGACAGAAGCTAAT+GGG | + | chr7.3:22966583-22966602 | None:intergenic | 30.0% | |
| CTTTGAACATTACAAATGCT+GGG | - | chr7.3:22967117-22967136 | MS.gene08203:intron | 30.0% | |
| CTTTGCTGACATAATAGATT+TGG | - | chr7.3:22969352-22969371 | MS.gene08203:intron | 30.0% | |
| TCAAGAAATCAACAGCTTTA+GGG | + | chr7.3:22968686-22968705 | None:intergenic | 30.0% | |
| TCAATTAATTCAAGCTCATC+AGG | - | chr7.3:22966388-22966407 | MS.gene08203:intron | 30.0% | |
| TCTTTGAACATTACAAATGC+TGG | - | chr7.3:22967116-22967135 | MS.gene08203:intron | 30.0% | |
| TGTAAACTTGACATAAGATG+GGG | + | chr7.3:22966952-22966971 | None:intergenic | 30.0% | |
| TTATAACTGTTAAGATGACC+GGG | + | chr7.3:22967754-22967773 | None:intergenic | 30.0% | |
| TTATATTCAGGTACCTGAAA+AGG | - | chr7.3:22968109-22968128 | MS.gene08203:CDS | 30.0% | |
| TTATGTTAATGGGGTTATTG+TGG | - | chr7.3:22966779-22966798 | MS.gene08203:CDS | 30.0% | |
| ! | AACATTTCCCTTTTAATGAG+TGG | - | chr7.3:22968461-22968480 | MS.gene08203:intron | 30.0% |
| ! | CAATTTTAAACTACCAGCAA+GGG | + | chr7.3:22966732-22966751 | None:intergenic | 30.0% |
| ! | CATTATAGTTGATACCTTGA+AGG | - | chr7.3:22968524-22968543 | MS.gene08203:CDS | 30.0% |
| ! | CATTTTGTAATTCACTTCTC+TGG | - | chr7.3:22966421-22966440 | MS.gene08203:intron | 30.0% |
| ! | TATTGTTTTCTGTACTTTGC+AGG | - | chr7.3:22967832-22967851 | MS.gene08203:CDS | 30.0% |
| ! | TCAATTTTAAACTACCAGCA+AGG | + | chr7.3:22966733-22966752 | None:intergenic | 30.0% |
| ! | TGTAAATTATTATGGTGCCA+TGG | - | chr7.3:22967030-22967049 | MS.gene08203:intron | 30.0% |
| !! | TGAAAACTGTACTTGTTATC+TGG | - | chr7.3:22968774-22968793 | MS.gene08203:intron | 30.0% |
| !!! | GTTATTTTGCTGTTAATGCT+GGG | - | chr7.3:22968395-22968414 | MS.gene08203:intron | 30.0% |
| !!! | TGGGGATATTGAAGTTTTTT+TGG | - | chr7.3:22967161-22967180 | MS.gene08203:intron | 30.0% |
| !!! | TTTTTTTAGGCTGGTTATCA+GGG | - | chr7.3:22969644-22969663 | MS.gene08203:intron | 30.0% |
| !!! | TTTTTTTTAGGCTGGTTATC+AGG | - | chr7.3:22969643-22969662 | MS.gene08203:intron | 30.0% |
| AAAAGTTACCCAAAACGCAT+TGG | + | chr7.3:22968174-22968193 | None:intergenic | 35.0% | |
| AAAGTTACCCAAAACGCATT+GGG | + | chr7.3:22968173-22968192 | None:intergenic | 35.0% | |
| AAAGTTGTACGATTTGTGTC+AGG | - | chr7.3:22968317-22968336 | MS.gene08203:intron | 35.0% | |
| AATAACCAACAAGAGTAGTG+AGG | + | chr7.3:22968381-22968400 | None:intergenic | 35.0% | |
| AATATGGCTGTTAACTTTCC+TGG | - | chr7.3:22967057-22967076 | MS.gene08203:intron | 35.0% | |
| ACAGTTCGAATTTCTTCAAC+TGG | + | chr7.3:22966829-22966848 | None:intergenic | 35.0% | |
| AGAGAAGAGTGAAGAAATAG+AGG | + | chr7.3:22966152-22966171 | None:intergenic | 35.0% | |
| ATACAAATCAGTGTAAGGGT+AGG | + | chr7.3:22966907-22966926 | None:intergenic | 35.0% | |
| CAGCTATACAAATCAGTGTA+AGG | + | chr7.3:22966912-22966931 | None:intergenic | 35.0% | |
| CATGCAGTATATGATCAGAA+AGG | + | chr7.3:22967342-22967361 | None:intergenic | 35.0% | |
| CCTAAATTGACAGAAGCTAA+TGG | + | chr7.3:22966584-22966603 | None:intergenic | 35.0% | |
| TAAAAGACAAGATGAGAAGG+AGG | + | chr7.3:22967401-22967420 | None:intergenic | 35.0% | |
| TCGTCTAGGTTTCAATGTTA+AGG | - | chr7.3:22969376-22969395 | MS.gene08203:intron | 35.0% | |
| TCTTACTTTCTATCTTCTGC+AGG | + | chr7.3:22969704-22969723 | None:intergenic | 35.0% | |
| TGATTCGTGGTTTATGAATC+AGG | - | chr7.3:22966322-22966341 | MS.gene08203:CDS | 35.0% | |
| TGGGATTGATCAAATAAGAG+AGG | - | chr7.3:22967136-22967155 | MS.gene08203:intron | 35.0% | |
| TGTTAATGCTGGGATATGTT+TGG | - | chr7.3:22968405-22968424 | MS.gene08203:intron | 35.0% | |
| TTAGAGATTAATACCGCTAC+TGG | + | chr7.3:22969083-22969102 | None:intergenic | 35.0% | |
| TTGACATAAGATGGGGAAAA+AGG | + | chr7.3:22966945-22966964 | None:intergenic | 35.0% | |
| TTGATCAAATAAGAGAGGCA+TGG | - | chr7.3:22967141-22967160 | MS.gene08203:intron | 35.0% | |
| TTGGTTCAATGCGTACAAAT+CGG | + | chr7.3:22968298-22968317 | None:intergenic | 35.0% | |
| ! | AAAACAAACTCTAGCCTTCA+AGG | + | chr7.3:22968541-22968560 | None:intergenic | 35.0% |
| ! | CCATTAGCTTCTGTCAATTT+AGG | - | chr7.3:22966581-22966600 | MS.gene08203:intron | 35.0% |
| ! | GACACAAATCGTACAACTTT+TGG | + | chr7.3:22968317-22968336 | None:intergenic | 35.0% |
| ! | GATTTGACTTCATCGGAAAT+AGG | - | chr7.3:22967615-22967634 | MS.gene08203:intron | 35.0% |
| ! | TCCTAAATGTTCAGTGCTTT+TGG | - | chr7.3:22967868-22967887 | MS.gene08203:intron | 35.0% |
| ! | TGATCAAATAAGAGAGGCAT+GGG | - | chr7.3:22967142-22967161 | MS.gene08203:intron | 35.0% |
| ! | TTGTTGTTGTTCATAGGGAA+GGG | + | chr7.3:22967238-22967257 | None:intergenic | 35.0% |
| !! | AAATTATTATGGTGCCATGG+TGG | - | chr7.3:22967033-22967052 | MS.gene08203:intron | 35.0% |
| !! | ACTTATCTAGAAGCACTTCT+GGG | - | chr7.3:22966448-22966467 | MS.gene08203:intron | 35.0% |
| !! | TATTGACTTAGGCTTGTCAA+AGG | - | chr7.3:22967682-22967701 | MS.gene08203:CDS | 35.0% |
| !!! | GGTTATTTTGCTGTTAATGC+TGG | - | chr7.3:22968394-22968413 | MS.gene08203:intron | 35.0% |
| AACAGAAACCTTCGAGAATG+TGG | + | chr7.3:22966881-22966900 | None:intergenic | 40.0% | |
| AAGTATGACGGTTATCCATC+AGG | - | chr7.3:22967435-22967454 | MS.gene08203:intron | 40.0% | |
| AAGTCAACCATAGATCCTGA+TGG | + | chr7.3:22967453-22967472 | None:intergenic | 40.0% | |
| AAGTCGCTCACTGCTAATAT+AGG | + | chr7.3:22967498-22967517 | None:intergenic | 40.0% | |
| AATGCTGGGATATGTTTGGA+AGG | - | chr7.3:22968409-22968428 | MS.gene08203:intron | 40.0% | |
| ACCAAATCAGTCCTATCTTC+AGG | + | chr7.3:22967902-22967921 | None:intergenic | 40.0% | |
| ATATACTGTACAACGGGCAA+GGG | + | chr7.3:22969264-22969283 | None:intergenic | 40.0% | |
| ATGCTGGGATATGTTTGGAA+GGG | - | chr7.3:22968410-22968429 | MS.gene08203:intron | 40.0% | |
| CCTAAGTCAATACTGTGTGA+TGG | + | chr7.3:22967674-22967693 | None:intergenic | 40.0% | |
| GACTTTGCATGTGATGCAAA+TGG | - | chr7.3:22967468-22967487 | MS.gene08203:intron | 40.0% | |
| GGTACCTGAAAAGGATAAAG+AGG | - | chr7.3:22968118-22968137 | MS.gene08203:CDS | 40.0% | |
| GTTAACCTCACTACTCTTGT+TGG | - | chr7.3:22968373-22968392 | MS.gene08203:intron | 40.0% | |
| GTTCGAATTTCTTCAACTGG+TGG | + | chr7.3:22966826-22966845 | None:intergenic | 40.0% | |
| TAGAAGCTAAAATCCCTTGC+TGG | - | chr7.3:22966716-22966735 | MS.gene08203:intron | 40.0% | |
| TATATACTGTACAACGGGCA+AGG | + | chr7.3:22969265-22969284 | None:intergenic | 40.0% | |
| TATATTAGCAGTGAGCGACT+TGG | - | chr7.3:22967497-22967516 | MS.gene08203:intron | 40.0% | |
| TCCTGAAGATAGGACTGATT+TGG | - | chr7.3:22967898-22967917 | MS.gene08203:intron | 40.0% | |
| TCGCACATGAACAAAGATCA+CGG | - | chr7.3:22969188-22969207 | MS.gene08203:intron | 40.0% | |
| TCTTCGACTTCAGAGTTTAC+CGG | - | chr7.3:22969008-22969027 | MS.gene08203:intron | 40.0% | |
| TGACTGAATTGATCATCTGC+AGG | - | chr7.3:22969325-22969344 | MS.gene08203:intron | 40.0% | |
| TTACAAAGATAGCATCACCG+TGG | + | chr7.3:22967934-22967953 | None:intergenic | 40.0% | |
| ! | AGTCAATACTGTGTGATGGA+TGG | + | chr7.3:22967670-22967689 | None:intergenic | 40.0% |
| ! | ATGAATCAGGTTGTTTCCTC+TGG | - | chr7.3:22966335-22966354 | MS.gene08203:intron | 40.0% |
| ! | ATGGCCTCTTTATCCTTTTC+AGG | + | chr7.3:22968125-22968144 | None:intergenic | 40.0% |
| ! | CTCGTAATGAAGGTTGACTT+TGG | - | chr7.3:22968266-22968285 | MS.gene08203:intron | 40.0% |
| ! | GATCAAATAAGAGAGGCATG+GGG | - | chr7.3:22967143-22967162 | MS.gene08203:intron | 40.0% |
| ! | GTTGTTGTTGTTCATAGGGA+AGG | + | chr7.3:22967239-22967258 | None:intergenic | 40.0% |
| ! | TGACTTTTGTTCATACCCCA+AGG | - | chr7.3:22967201-22967220 | MS.gene08203:intron | 40.0% |
| ! | TTTGACACGCAGAAGTATGA+CGG | - | chr7.3:22967423-22967442 | MS.gene08203:intron | 40.0% |
| !! | AAATAGAGGTACCTGAGTAG+TGG | + | chr7.3:22966138-22966157 | None:intergenic | 40.0% |
| !! | AAGGGTGTTTACAGTTCCTT+GGG | + | chr7.3:22967220-22967239 | None:intergenic | 40.0% |
| !! | AGCTGTTGATTTCTTGATGC+TGG | - | chr7.3:22968689-22968708 | MS.gene08203:intron | 40.0% |
| !! | CACTTATCTAGAAGCACTTC+TGG | - | chr7.3:22966447-22966466 | MS.gene08203:intron | 40.0% |
| !! | CCATCACACAGTATTGACTT+AGG | - | chr7.3:22967671-22967690 | MS.gene08203:CDS | 40.0% |
| !! | GATTTGGTGATCACTATCCA+CGG | - | chr7.3:22967914-22967933 | MS.gene08203:intron | 40.0% |
| !! | GCCAAAAGCACTGAACATTT+AGG | + | chr7.3:22967872-22967891 | None:intergenic | 40.0% |
| !! | TGCTGATTTGTACTCATCTC+CGG | + | chr7.3:22969030-22969049 | None:intergenic | 40.0% |
| !!! | GAAGGCTAGAGTTTGTTTTG+CGG | - | chr7.3:22968542-22968561 | MS.gene08203:CDS | 40.0% |
| CGGTTATCCATCAGGATCTA+TGG | - | chr7.3:22967443-22967462 | MS.gene08203:intron | 45.0% | |
| CTGAATTGATCATCTGCAGG+TGG | - | chr7.3:22969328-22969347 | MS.gene08203:intron | 45.0% | |
| CTGTACTTTGCAGGACTTAG+CGG | - | chr7.3:22967841-22967860 | MS.gene08203:CDS | 45.0% | |
| CTTGCTCGTTCCTGAAGTAA+TGG | + | chr7.3:22968905-22968924 | None:intergenic | 45.0% | |
| GCTTGGAAAACTGAGCAATG+GGG | + | chr7.3:22969061-22969080 | None:intergenic | 45.0% | |
| GGCTTGGAAAACTGAGCAAT+GGG | + | chr7.3:22969062-22969081 | None:intergenic | 45.0% | |
| GTTAATGGGGTTATTGTGGC+AGG | - | chr7.3:22966783-22966802 | MS.gene08203:CDS | 45.0% | |
| TAACAGCCATATTGCCACCA+TGG | + | chr7.3:22967050-22967069 | None:intergenic | 45.0% | |
| TATACTGTACAACGGGCAAG+GGG | + | chr7.3:22969263-22969282 | None:intergenic | 45.0% | |
| TCCTGATCCTAACAAAGCTG+TGG | + | chr7.3:22968348-22968367 | None:intergenic | 45.0% | |
| TCCTTGATCGTAGTCTACGT+GGG | - | chr7.3:22966848-22966867 | MS.gene08203:intron | 45.0% | |
| TGGCTAGAGATCCTGAAGAT+AGG | - | chr7.3:22967888-22967907 | MS.gene08203:intron | 45.0% | |
| TTCTATCTTCTGCAGGTCGA+GGG | + | chr7.3:22969697-22969716 | None:intergenic | 45.0% | |
| TTCTTCCCAATCCACTACTC+AGG | - | chr7.3:22966124-22966143 | MS.gene08203:CDS | 45.0% | |
| TTGATTTCTTGATGCTGGCG+TGG | - | chr7.3:22968694-22968713 | MS.gene08203:intron | 45.0% | |
| TTTCTATCTTCTGCAGGTCG+AGG | + | chr7.3:22969698-22969717 | None:intergenic | 45.0% | |
| ! | AGGGTGTTTACAGTTCCTTG+GGG | + | chr7.3:22967219-22967238 | None:intergenic | 45.0% |
| ! | CGACTTGGCAGTTCATTCAA+AGG | - | chr7.3:22967512-22967531 | MS.gene08203:intron | 45.0% |
| ! | GAGACATCCCAATGCGTTTT+GGG | - | chr7.3:22968163-22968182 | MS.gene08203:intron | 45.0% |
| ! | GATTAATACCGCTACTGGCT+TGG | + | chr7.3:22969078-22969097 | None:intergenic | 45.0% |
| ! | TCAGTTTTCCAAGCCAGTAG+CGG | - | chr7.3:22969067-22969086 | MS.gene08203:intron | 45.0% |
| ! | TGGCTTGGAAAACTGAGCAA+TGG | + | chr7.3:22969063-22969082 | None:intergenic | 45.0% |
| !! | ACAGCTTTGTTAGGATCAGG+AGG | - | chr7.3:22968347-22968366 | MS.gene08203:intron | 45.0% |
| !! | AGGTACCTGAGTAGTGGATT+GGG | + | chr7.3:22966132-22966151 | None:intergenic | 45.0% |
| !! | GAAGGGTGTTTACAGTTCCT+TGG | + | chr7.3:22967221-22967240 | None:intergenic | 45.0% |
| !!! | TAAAATAATCATTTTTTTTT+AGG | - | chr7.3:22969631-22969650 | MS.gene08203:CDS | 5.0% |
| !!! | TCAATTAAAATATTTTTTAT+TGG | - | chr7.3:22968860-22968879 | MS.gene08203:intron | 5.0% |
| AGTGAAAGCTACTCCAGACC+AGG | + | chr7.3:22967078-22967097 | None:intergenic | 50.0% | |
| CGCCAAATATGCAGCTCGTA+TGG | + | chr7.3:22968144-22968163 | None:intergenic | 50.0% | |
| CTAAAGCGATTGTGCAGCAC+TGG | - | chr7.3:22969219-22969238 | MS.gene08203:intron | 50.0% | |
| CTGTGTGGATGCTGTAAAGC+AGG | - | chr7.3:22968565-22968584 | MS.gene08203:intron | 50.0% | |
| GGCCATACGAGCTGCATATT+TGG | - | chr7.3:22968139-22968158 | MS.gene08203:intron | 50.0% | |
| GGCTGTTAACTTTCCTGGTC+TGG | - | chr7.3:22967062-22967081 | MS.gene08203:intron | 50.0% | |
| GTCCTTGATCGTAGTCTACG+TGG | - | chr7.3:22966847-22966866 | MS.gene08203:intron | 50.0% | |
| TCATGTCTTCAACCTGCTCC+CGG | - | chr7.3:22967733-22967752 | MS.gene08203:intron | 50.0% | |
| TCCCACGTAGACTACGATCA+AGG | + | chr7.3:22966852-22966871 | None:intergenic | 50.0% | |
| ! | CGAGACATCCCAATGCGTTT+TGG | - | chr7.3:22968162-22968181 | MS.gene08203:intron | 50.0% |
| ! | GGTCTGGAGTAGCTTTCACT+AGG | - | chr7.3:22967078-22967097 | MS.gene08203:intron | 50.0% |
| !! | ATGGTGCCATGGTGGCAATA+TGG | - | chr7.3:22967041-22967060 | MS.gene08203:intron | 50.0% |
| !! | GAGGTACCTGAGTAGTGGAT+TGG | + | chr7.3:22966133-22966152 | None:intergenic | 50.0% |
| !! | GCCACAGCTTTGTTAGGATC+AGG | - | chr7.3:22968344-22968363 | MS.gene08203:intron | 50.0% |
| !! | GGTGTTGCCACAGCTTTGTT+AGG | - | chr7.3:22968338-22968357 | MS.gene08203:intron | 50.0% |
| !!! | GAGTTTGTTTTGCGGCTGTG+TGG | - | chr7.3:22968550-22968569 | MS.gene08203:intron | 50.0% |
| AAGGGGACATACCGGAACTG+AGG | + | chr7.3:22969246-22969265 | None:intergenic | 55.0% | |
| CAACTTGAGGCTTGGCAGCT+TGG | + | chr7.3:22969859-22969878 | None:intergenic | 55.0% | |
| CTGTTAAGATGACCGGGAGC+AGG | + | chr7.3:22967748-22967767 | None:intergenic | 55.0% | |
| GACGCTCTCCACATTCTCGA+AGG | - | chr7.3:22966870-22966889 | MS.gene08203:intron | 55.0% | |
| TCTTCTGCAGGTCGAGGGAA+AGG | + | chr7.3:22969692-22969711 | None:intergenic | 55.0% | |
| CAACGGGCAAGGGGACATAC+CGG | + | chr7.3:22969254-22969273 | None:intergenic | 60.0% | |
| ! | CAGGTCGAGGGAAAGGCACA+CGG | + | chr7.3:22969685-22969704 | None:intergenic | 60.0% |
| ! | GCAGCACTGGACCTCAGTTC+CGG | - | chr7.3:22969232-22969251 | MS.gene08203:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 22966113 | 22969883 | 22966113 | ID=MS.gene08203 |
| chr7.3 | mRNA | 22966113 | 22969883 | 22966113 | ID=MS.gene08203.t1;Parent=MS.gene08203 |
| chr7.3 | exon | 22969851 | 22969883 | 22969851 | ID=MS.gene08203.t1.exon1;Parent=MS.gene08203.t1 |
| chr7.3 | CDS | 22969851 | 22969883 | 22969851 | ID=cds.MS.gene08203.t1;Parent=MS.gene08203.t1 |
| chr7.3 | exon | 22969587 | 22969652 | 22969587 | ID=MS.gene08203.t1.exon2;Parent=MS.gene08203.t1 |
| chr7.3 | CDS | 22969587 | 22969652 | 22969587 | ID=cds.MS.gene08203.t1;Parent=MS.gene08203.t1 |
| chr7.3 | exon | 22969105 | 22969191 | 22969105 | ID=MS.gene08203.t1.exon3;Parent=MS.gene08203.t1 |
| chr7.3 | CDS | 22969105 | 22969191 | 22969105 | ID=cds.MS.gene08203.t1;Parent=MS.gene08203.t1 |
| chr7.3 | exon | 22968463 | 22968561 | 22968463 | ID=MS.gene08203.t1.exon4;Parent=MS.gene08203.t1 |
| chr7.3 | CDS | 22968463 | 22968561 | 22968463 | ID=cds.MS.gene08203.t1;Parent=MS.gene08203.t1 |
| chr7.3 | exon | 22968047 | 22968142 | 22968047 | ID=MS.gene08203.t1.exon5;Parent=MS.gene08203.t1 |
| chr7.3 | CDS | 22968047 | 22968142 | 22968047 | ID=cds.MS.gene08203.t1;Parent=MS.gene08203.t1 |
| chr7.3 | exon | 22967812 | 22967877 | 22967812 | ID=MS.gene08203.t1.exon6;Parent=MS.gene08203.t1 |
| chr7.3 | CDS | 22967812 | 22967877 | 22967812 | ID=cds.MS.gene08203.t1;Parent=MS.gene08203.t1 |
| chr7.3 | exon | 22967628 | 22967718 | 22967628 | ID=MS.gene08203.t1.exon7;Parent=MS.gene08203.t1 |
| chr7.3 | CDS | 22967628 | 22967718 | 22967628 | ID=cds.MS.gene08203.t1;Parent=MS.gene08203.t1 |
| chr7.3 | exon | 22966908 | 22966975 | 22966908 | ID=MS.gene08203.t1.exon8;Parent=MS.gene08203.t1 |
| chr7.3 | CDS | 22966908 | 22966975 | 22966908 | ID=cds.MS.gene08203.t1;Parent=MS.gene08203.t1 |
| chr7.3 | exon | 22966743 | 22966808 | 22966743 | ID=MS.gene08203.t1.exon9;Parent=MS.gene08203.t1 |
| chr7.3 | CDS | 22966743 | 22966808 | 22966743 | ID=cds.MS.gene08203.t1;Parent=MS.gene08203.t1 |
| chr7.3 | exon | 22966599 | 22966649 | 22966599 | ID=MS.gene08203.t1.exon10;Parent=MS.gene08203.t1 |
| chr7.3 | CDS | 22966599 | 22966649 | 22966599 | ID=cds.MS.gene08203.t1;Parent=MS.gene08203.t1 |
| chr7.3 | exon | 22966279 | 22966343 | 22966279 | ID=MS.gene08203.t1.exon11;Parent=MS.gene08203.t1 |
| chr7.3 | CDS | 22966279 | 22966343 | 22966279 | ID=cds.MS.gene08203.t1;Parent=MS.gene08203.t1 |
| chr7.3 | exon | 22966113 | 22966170 | 22966113 | ID=MS.gene08203.t1.exon12;Parent=MS.gene08203.t1 |
| chr7.3 | CDS | 22966113 | 22966170 | 22966113 | ID=cds.MS.gene08203.t1;Parent=MS.gene08203.t1 |
| Gene Sequence |
| Protein sequence |
