Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08369.t1 | RHN42304.1 | 98.6 | 1107 | 14 | 1 | 35 | 1139 | 48 | 1154 | 0.00E+00 | 2114.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08369.t1 | Q9LKW9 | 63.3 | 1115 | 389 | 13 | 35 | 1138 | 37 | 1142 | 0.0e+00 | 1322.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08369.t1 | A0A396GS19 | 98.6 | 1107 | 14 | 1 | 35 | 1139 | 48 | 1154 | 0.0e+00 | 2114.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050257 | MS.gene08369 | 0.870566 | 1.33E-66 | -1.69E-46 |
| MS.gene050258 | MS.gene08369 | 0.884151 | 2.45E-71 | -1.69E-46 |
| MS.gene050348 | MS.gene08369 | 0.828958 | 6.73E-55 | -1.69E-46 |
| MS.gene052307 | MS.gene08369 | 0.808278 | 3.35E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene08369 | 0.800693 | 1.28E-48 | -1.69E-46 |
| MS.gene053945 | MS.gene08369 | 0.81253 | 4.05E-51 | -1.69E-46 |
| MS.gene054585 | MS.gene08369 | 0.803071 | 4.15E-49 | -1.69E-46 |
| MS.gene058649 | MS.gene08369 | 0.820175 | 7.88E-53 | -1.69E-46 |
| MS.gene059778 | MS.gene08369 | 0.805677 | 1.19E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08369.t1 | MTR_2g038400 | 70.707 | 99 | 19 | 1 | 112 | 200 | 8 | 106 | 1.21e-31 | 120 |
| MS.gene08369.t1 | MTR_2g028230 | 24.494 | 445 | 279 | 12 | 25 | 442 | 3 | 417 | 9.47e-19 | 91.7 |
| MS.gene08369.t1 | MTR_3g055600 | 25.323 | 387 | 237 | 13 | 95 | 450 | 86 | 451 | 6.26e-14 | 76.6 |
| MS.gene08369.t1 | MTR_1g082440 | 26.444 | 329 | 214 | 9 | 95 | 403 | 81 | 401 | 2.13e-13 | 74.7 |
| MS.gene08369.t1 | MTR_1g082450 | 24.336 | 452 | 293 | 15 | 19 | 444 | 11 | 439 | 3.79e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08369.t1 | AT2G01980 | 63.360 | 1119 | 390 | 13 | 31 | 1138 | 33 | 1142 | 0.0 | 1379 |
| MS.gene08369.t1 | AT1G14660 | 67.397 | 730 | 233 | 3 | 13 | 739 | 13 | 740 | 0.0 | 994 |
| MS.gene08369.t1 | AT1G14660 | 63.699 | 730 | 237 | 5 | 13 | 739 | 13 | 717 | 0.0 | 920 |
| MS.gene08369.t1 | AT1G79610 | 25.416 | 421 | 275 | 12 | 40 | 442 | 33 | 432 | 4.70e-26 | 114 |
| MS.gene08369.t1 | AT1G54370 | 26.562 | 384 | 247 | 12 | 40 | 404 | 32 | 399 | 6.56e-20 | 95.5 |
| MS.gene08369.t1 | AT5G55470 | 24.267 | 375 | 257 | 10 | 95 | 450 | 78 | 444 | 6.17e-14 | 76.6 |
Find 231 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCCTTTCTAAGATATTT+TGG | 0.131042 | 4.1:-17234810 | MS.gene08369:CDS |
| CCGTTAATTTCTCAAATATC+TGG | 0.182812 | 4.1:+17228878 | None:intergenic |
| CAAGAGAGTGCGGATGTTTC+TGG | 0.218016 | 4.1:-17236551 | MS.gene08369:CDS |
| TGCGTAAAAGTTGGATAAAA+TGG | 0.220967 | 4.1:+17229288 | None:intergenic |
| CTCATCCTTGGCATTGCTCT+TGG | 0.232996 | 4.1:-17243225 | MS.gene08369:CDS |
| AATGGAAGTTCACCAAATTA+AGG | 0.242574 | 4.1:-17238586 | MS.gene08369:intron |
| TCTTATTTGCTTCGACAAAA+AGG | 0.244610 | 4.1:+17229184 | None:intergenic |
| GCAATGCAGCTGAGCATATA+TGG | 0.245091 | 4.1:-17227621 | MS.gene08369:CDS |
| GGGCCAAATCAAATGGTATT+TGG | 0.247097 | 4.1:-17229447 | MS.gene08369:CDS |
| GACATATCCTTCTAGTAAAA+AGG | 0.248756 | 4.1:+17228765 | None:intergenic |
| GGTATTTGGTTAATTTCTAA+TGG | 0.259059 | 4.1:-17229433 | MS.gene08369:CDS |
| TCAGATGCAGTTATCTTCTT+TGG | 0.260845 | 4.1:-17243321 | MS.gene08369:CDS |
| TGTTTCCCCTCTTATATATA+TGG | 0.263470 | 4.1:+17228813 | None:intergenic |
| CTATTCTATCGGATGGTTCT+TGG | 0.275444 | 4.1:-17237065 | MS.gene08369:CDS |
| TCATCAAGGGTCTTGTTATC+TGG | 0.277394 | 4.1:-17227865 | MS.gene08369:CDS |
| CCTTGAGAATGCTGGGATAT+TGG | 0.280460 | 4.1:-17229780 | MS.gene08369:CDS |
| TACCTGACATTGACAAATTT+AGG | 0.281458 | 4.1:+17228671 | None:intergenic |
| ATGTTAAATTAACATCTTCT+AGG | 0.288334 | 4.1:+17230066 | None:intergenic |
| CAAAGACTCCCCTTCAATTA+TGG | 0.288506 | 4.1:+17237337 | None:intergenic |
| TAACCAAATACCATTTGATT+TGG | 0.295146 | 4.1:+17229444 | None:intergenic |
| AGCAAAGCTTACATCACTTT+TGG | 0.306140 | 4.1:-17236387 | MS.gene08369:intron |
| TAGGTGTCCAAGCTGCTTAC+TGG | 0.315571 | 4.1:-17230705 | MS.gene08369:CDS |
| TGCCCTTGCAGACAAACTAT+TGG | 0.319388 | 4.1:+17227641 | None:intergenic |
| TTGTGCTAGAAACTTGATTA+TGG | 0.324653 | 4.1:+17237022 | None:intergenic |
| AACAAAGCATTAGAGGCTTT+TGG | 0.326153 | 4.1:-17232287 | MS.gene08369:CDS |
| ATTCTTCCACTGATAGCATT+AGG | 0.326908 | 4.1:+17230638 | None:intergenic |
| ACGTGGCTTGACACTTTATA+AGG | 0.334941 | 4.1:-17229473 | MS.gene08369:CDS |
| TTTGGTCTCAGTCTTGCTCT+TGG | 0.339821 | 4.1:-17243303 | MS.gene08369:CDS |
| TTCACTGTGGGCCAGTCAGC+AGG | 0.341866 | 4.1:+17232236 | None:intergenic |
| GTATTTGGTTAATTTCTAAT+GGG | 0.342597 | 4.1:-17229432 | MS.gene08369:CDS |
| GTAGGAATTGGCCTTGCGTT+CGG | 0.344237 | 4.1:-17236911 | MS.gene08369:CDS |
| CGTATGTCTTTCAAATTCAT+AGG | 0.344417 | 4.1:+17232131 | None:intergenic |
| CCAGATATTTGAGAAATTAA+CGG | 0.345061 | 4.1:-17228878 | MS.gene08369:CDS |
| AATGCTCAACAAAGCATTAG+AGG | 0.353136 | 4.1:-17232294 | MS.gene08369:CDS |
| GGCATTGCTCTTGGATCCTT+AGG | 0.353533 | 4.1:-17243216 | MS.gene08369:intron |
| TAGGAATTGGCCTTGCGTTC+GGG | 0.362803 | 4.1:-17236910 | MS.gene08369:CDS |
| TCACCTCTTCCCCTCAAGAC+TGG | 0.370990 | 4.1:+17227095 | None:intergenic |
| GGAAAACGTCGCTGTTGCTT+GGG | 0.371969 | 4.1:-17237436 | MS.gene08369:CDS |
| AGTGGAAGAATCAATAGATT+TGG | 0.376295 | 4.1:-17230626 | MS.gene08369:CDS |
| CATCATCGGCTGGGAAAGAT+TGG | 0.376365 | 4.1:-17238876 | MS.gene08369:CDS |
| AATACCATTGTTCCAGTCTC+TGG | 0.378166 | 4.1:+17233698 | None:intergenic |
| CAACAATTACATGATTTCAT+AGG | 0.380350 | 4.1:-17230421 | MS.gene08369:intron |
| AGGAACTCGGGCCTGCTGAC+TGG | 0.382866 | 4.1:-17232247 | MS.gene08369:CDS |
| TTCCTAAATTTGTCAATGTC+AGG | 0.384859 | 4.1:-17228673 | MS.gene08369:intron |
| GTCACTTTCACTATCGGTTA+AGG | 0.386511 | 4.1:-17234721 | MS.gene08369:intron |
| CAAGAACCATCCGATAGAAT+AGG | 0.386858 | 4.1:+17237066 | None:intergenic |
| GATTGCTCCAGTGTAGGAAT+TGG | 0.390911 | 4.1:-17236923 | MS.gene08369:intron |
| ATGAGCAAAGCGACAGTGTA+AGG | 0.392815 | 4.1:+17243243 | None:intergenic |
| TATCTGGGGAAGTAATAGTT+TGG | 0.406891 | 4.1:+17228894 | None:intergenic |
| TGGAAAACGTCGCTGTTGCT+TGG | 0.406997 | 4.1:-17237437 | MS.gene08369:CDS |
| TTCTGCCTGTAGAAATGTTC+AGG | 0.410277 | 4.1:+17227693 | None:intergenic |
| CGTTAATTTCTCAAATATCT+GGG | 0.421200 | 4.1:+17228879 | None:intergenic |
| TTTACGCATGGGAGCACATT+GGG | 0.423269 | 4.1:-17229273 | MS.gene08369:CDS |
| GCTATTATTCTCGTCTGGTC+CGG | 0.434655 | 4.1:-17234765 | MS.gene08369:CDS |
| ATTTGCAAGGACAGCTTTCA+AGG | 0.435228 | 4.1:-17236419 | MS.gene08369:CDS |
| AACAAGGCTACAACTGCAAC+AGG | 0.435383 | 4.1:+17237392 | None:intergenic |
| GTGACAACATTACAGATATA+TGG | 0.435784 | 4.1:+17229225 | None:intergenic |
| AAAACAGCCAGCAGGAGCTC+TGG | 0.435837 | 4.1:+17238642 | None:intergenic |
| ATCATCGGCTGGGAAAGATT+GGG | 0.436905 | 4.1:-17238875 | MS.gene08369:CDS |
| GAAATGACCATATATATAAG+AGG | 0.437424 | 4.1:-17228820 | MS.gene08369:CDS |
| GTTCAAAACCTTGAGAATGC+TGG | 0.441642 | 4.1:-17229788 | MS.gene08369:CDS |
| CACAAGAAGTCTTCCATTGA+AGG | 0.441739 | 4.1:+17229138 | None:intergenic |
| CTTTGACGTGGTTCAAAGGT+TGG | 0.443015 | 4.1:+17227321 | None:intergenic |
| AAGAACCATCCGATAGAATA+GGG | 0.444727 | 4.1:+17237067 | None:intergenic |
| TTCTTGGAGAGACCTTCAAC+TGG | 0.449538 | 4.1:-17237049 | MS.gene08369:CDS |
| TCTTGTTTAAATGACATTGA+AGG | 0.449962 | 4.1:-17232203 | MS.gene08369:CDS |
| CTTCGATCTGTGCTTTGTGA+AGG | 0.450365 | 4.1:+17227207 | None:intergenic |
| CTGAAGCTGAAGCTGAAAGC+AGG | 0.455045 | 4.1:+17243385 | None:intergenic |
| GGCAACTGCTCCACGCAATC+CGG | 0.460952 | 4.1:+17234746 | None:intergenic |
| TCTCAAATCCGACCCTTCAA+TGG | 0.461744 | 4.1:-17229151 | MS.gene08369:CDS |
| TTTGTTGTGTAGGAAAATCA+TGG | 0.462139 | 4.1:-17234896 | MS.gene08369:intron |
| TGGAGGAACTTGTAGTAACT+TGG | 0.462214 | 4.1:+17230550 | None:intergenic |
| TAAACCTTTCCAGTCACATA+GGG | 0.464931 | 4.1:+17230591 | None:intergenic |
| CAGTTCATATTACACTTCCT+TGG | 0.465881 | 4.1:-17233543 | MS.gene08369:CDS |
| ACCTCAAGGTCATCAAGAAC+TGG | 0.466080 | 4.1:-17228740 | MS.gene08369:CDS |
| TTCCCAGTCTTGAGGGGAAG+AGG | 0.466992 | 4.1:-17227098 | MS.gene08369:CDS |
| GTTGGATATGACAAACTTTG+AGG | 0.468284 | 4.1:+17227339 | None:intergenic |
| TTTCGAGAGCTCATTCTCAA+TGG | 0.469315 | 4.1:-17238604 | MS.gene08369:CDS |
| GCGTAAAAGTTGGATAAAAT+GGG | 0.469459 | 4.1:+17229289 | None:intergenic |
| TGCCTTGTCACTTTCACTAT+CGG | 0.470497 | 4.1:-17234727 | MS.gene08369:CDS |
| GGTAACCGCACCAGCAGCTC+TGG | 0.473166 | 4.1:-17228719 | MS.gene08369:CDS |
| ACTGTCGCTTTGCTCATCCT+TGG | 0.476445 | 4.1:-17243237 | MS.gene08369:CDS |
| CAATGCAGCTGAGCATATAT+GGG | 0.477903 | 4.1:-17227620 | MS.gene08369:CDS |
| ATTGAATTGACTCCAGAGAC+TGG | 0.478667 | 4.1:-17233710 | MS.gene08369:CDS |
| TGAAGCTGAAAGCAGGGAAA+AGG | 0.481172 | 4.1:+17243392 | None:intergenic |
| GATTATGGTAGCCCAGTTGA+AGG | 0.483438 | 4.1:+17237037 | None:intergenic |
| TTCAAAACCTTGAGAATGCT+GGG | 0.486859 | 4.1:-17229787 | MS.gene08369:CDS |
| CACCTCTTCCCCTCAAGACT+GGG | 0.487508 | 4.1:+17227096 | None:intergenic |
| AAGAAGCTATTATTCTCGTC+TGG | 0.489581 | 4.1:-17234770 | MS.gene08369:CDS |
| GTTATAGCTGAAGGAATACT+TGG | 0.492084 | 4.1:-17235425 | MS.gene08369:CDS |
| TTAGGAAGCTTAACCATAGG+AGG | 0.492485 | 4.1:+17229583 | None:intergenic |
| GGACTCTAGTCCCACGCAAA+AGG | 0.493391 | 4.1:+17243265 | None:intergenic |
| ACATCTTCATGATGCTGTCC+AGG | 0.493830 | 4.1:-17229741 | MS.gene08369:intron |
| AAAAGGCAACTGAATGATAA+GGG | 0.497714 | 4.1:+17228782 | None:intergenic |
| TTATACCCTATTCTATCGGA+TGG | 0.498354 | 4.1:-17237072 | MS.gene08369:CDS |
| TATCCAAAATATCTTAGAAA+GGG | 0.504139 | 4.1:+17234807 | None:intergenic |
| GGCTTGACACTTTATAAGGA+AGG | 0.504240 | 4.1:-17229469 | MS.gene08369:CDS |
| AGGTGTCCAAGCTGCTTACT+GGG | 0.506147 | 4.1:-17230704 | MS.gene08369:CDS |
| ATATCCAAAATATCTTAGAA+AGG | 0.507755 | 4.1:+17234806 | None:intergenic |
| AAGGAAGGGGCCAAATCAAA+TGG | 0.508064 | 4.1:-17229454 | MS.gene08369:CDS |
| ATATGGTACTCATCATCGGC+TGG | 0.508250 | 4.1:-17238886 | MS.gene08369:CDS |
| TGTCTAGATGCATTGTTGTT+GGG | 0.508423 | 4.1:-17234839 | MS.gene08369:CDS |
| TTTCATACTTTGTAAACTCA+AGG | 0.508771 | 4.1:+17232315 | None:intergenic |
| GAAAACGTCGCTGTTGCTTG+GGG | 0.509537 | 4.1:-17237435 | MS.gene08369:CDS |
| GCTCTGCCGTCTTCAGTTCG+TGG | 0.511630 | 4.1:-17229532 | MS.gene08369:CDS |
| CATCTGAGCCCCTATGTGAC+TGG | 0.511845 | 4.1:-17230600 | MS.gene08369:CDS |
| AATTTCTAATGGGGTGGTGA+AGG | 0.512481 | 4.1:-17229422 | MS.gene08369:intron |
| CTTGGAGATGATGAGGAACT+CGG | 0.514506 | 4.1:-17232260 | MS.gene08369:CDS |
| GTGTCTAGATGCATTGTTGT+TGG | 0.514928 | 4.1:-17234840 | MS.gene08369:CDS |
| GCAGCTCTGGTTCCTTCACA+TGG | 0.515262 | 4.1:-17228706 | MS.gene08369:CDS |
| GGGAGTCTTTGATGAATGAT+GGG | 0.518002 | 4.1:-17237325 | MS.gene08369:intron |
| GGGGAGTCTTTGATGAATGA+TGG | 0.519175 | 4.1:-17237326 | MS.gene08369:CDS |
| AAGTTAAGCACCATAATTGA+AGG | 0.519301 | 4.1:-17237347 | MS.gene08369:CDS |
| AGCATAGTGCTCTTATGAGT+TGG | 0.519368 | 4.1:-17227716 | MS.gene08369:CDS |
| ATTACTTAGAAACCCTCCTA+TGG | 0.521653 | 4.1:-17229596 | MS.gene08369:CDS |
| GTGCTCCCATGCGTAAAAGT+TGG | 0.522400 | 4.1:+17229279 | None:intergenic |
| GAAATATATCTCTTCACTGT+GGG | 0.522957 | 4.1:+17232224 | None:intergenic |
| TACTGGGAGATGCTTGATGA+AGG | 0.523358 | 4.1:-17230688 | MS.gene08369:CDS |
| AATGGAAGACTTCTTGTGGC+AGG | 0.523572 | 4.1:-17229133 | MS.gene08369:intron |
| TTCGATCTGTGCTTTGTGAA+GGG | 0.525010 | 4.1:+17227208 | None:intergenic |
| CTAAACCTTTCCAGTCACAT+AGG | 0.527288 | 4.1:+17230590 | None:intergenic |
| GAGCTCTCGAAAAGGAGAGC+AGG | 0.527488 | 4.1:+17238615 | None:intergenic |
| TTGAGAATGAGCTCTCGAAA+AGG | 0.527824 | 4.1:+17238607 | None:intergenic |
| TTGGTTAATTTCTAATGGGG+TGG | 0.532424 | 4.1:-17229428 | MS.gene08369:CDS |
| TCCTTTGTACCGCTTACAAG+TGG | 0.534784 | 4.1:+17229508 | None:intergenic |
| ATGGTTGAAATTACAACACC+TGG | 0.535919 | 4.1:+17237583 | None:intergenic |
| GATTGATCCAGAGCTCCTGC+TGG | 0.537349 | 4.1:-17238649 | MS.gene08369:CDS |
| TGTTAATTTAACATACCCTC+AGG | 0.537586 | 4.1:-17230057 | MS.gene08369:intron |
| TATTTGGTTAATTTCTAATG+GGG | 0.539043 | 4.1:-17229431 | MS.gene08369:CDS |
| ACCAGTTCTTGATGACCTTG+AGG | 0.539488 | 4.1:+17228739 | None:intergenic |
| TTTCTAGCACAAGTTTCACT+TGG | 0.539570 | 4.1:-17237011 | MS.gene08369:CDS |
| ACGACTTTGACGTGGTTCAA+AGG | 0.541912 | 4.1:+17227317 | None:intergenic |
| CCAATATCCCAGCATTCTCA+AGG | 0.543142 | 4.1:+17229780 | None:intergenic |
| TTGTTGTGTAGGAAAATCAT+GGG | 0.545555 | 4.1:-17234895 | MS.gene08369:intron |
| TGGTTTATACCCTATTCTAT+CGG | 0.546971 | 4.1:-17237076 | MS.gene08369:CDS |
| AATCCAATAGTTTGTCTGCA+AGG | 0.547564 | 4.1:-17227644 | MS.gene08369:CDS |
| GCTTGACACTTTATAAGGAA+GGG | 0.547709 | 4.1:-17229468 | MS.gene08369:CDS |
| AAATGACCATATATATAAGA+GGG | 0.548802 | 4.1:-17228819 | MS.gene08369:CDS |
| CCACGTCAAAGTCGTCCACT+TGG | 0.549984 | 4.1:-17227309 | MS.gene08369:CDS |
| TCAAGAGAATACTACCATGA+TGG | 0.551115 | 4.1:+17235387 | None:intergenic |
| ATCCAATAGTTTGTCTGCAA+GGG | 0.551501 | 4.1:-17227643 | MS.gene08369:CDS |
| GTTGGCCTGAACATTTCTAC+AGG | 0.551991 | 4.1:-17227698 | MS.gene08369:CDS |
| AAGAAGATAACTGCATCTGA+TGG | 0.552503 | 4.1:+17243324 | None:intergenic |
| AGTGGAGTTGTTATAGCTGA+AGG | 0.555246 | 4.1:-17235434 | MS.gene08369:CDS |
| GGTTCTATTCCGCATTTGCA+AGG | 0.560213 | 4.1:-17236432 | MS.gene08369:CDS |
| CTTGACACTTTATAAGGAAG+GGG | 0.561781 | 4.1:-17229467 | MS.gene08369:CDS |
| GACTCCAGAGACTGGAACAA+TGG | 0.562141 | 4.1:-17233702 | MS.gene08369:intron |
| GAAGTCTTCCATTGAAGGGT+CGG | 0.562961 | 4.1:+17229143 | None:intergenic |
| CGGCTGGGAAAGATTGGGGA+TGG | 0.563072 | 4.1:-17238870 | MS.gene08369:CDS |
| CAGAATATGGTACTCATCAT+CGG | 0.564072 | 4.1:-17238890 | MS.gene08369:CDS |
| CTCGTCTGGTCCGGATTGCG+TGG | 0.564346 | 4.1:-17234756 | MS.gene08369:CDS |
| AAGTAATATACATCCTATGT+TGG | 0.565785 | 4.1:-17229557 | MS.gene08369:CDS |
| TAAGAGCACTATGCTGTCTA+CGG | 0.567627 | 4.1:+17227724 | None:intergenic |
| AGTTAAGCACCATAATTGAA+GGG | 0.568316 | 4.1:-17237346 | MS.gene08369:CDS |
| GCACAAATGATCATACTAGC+TGG | 0.568613 | 4.1:-17237607 | MS.gene08369:CDS |
| TCGGTGGGAACATACTTGAC+TGG | 0.568854 | 4.1:+17230530 | None:intergenic |
| ATGATAACTTATTCATGCCA+AGG | 0.569926 | 4.1:+17233526 | None:intergenic |
| CTTGTCCAGGACGGCTATCG+TGG | 0.569928 | 4.1:-17237096 | MS.gene08369:intron |
| GAAAGCTGTCCTTGCAAATG+CGG | 0.571222 | 4.1:+17236423 | None:intergenic |
| CATCAATGAAAGTGTTGTAG+AGG | 0.573406 | 4.1:-17230108 | MS.gene08369:CDS |
| CTGGGAAAAGATAGTGTGCT+TGG | 0.574208 | 4.1:+17227114 | None:intergenic |
| TTCAGGGTTATTACATGCTG+CGG | 0.574831 | 4.1:-17227766 | MS.gene08369:CDS |
| GCATCTCCCAGTAAGCAGCT+TGG | 0.576636 | 4.1:+17230698 | None:intergenic |
| TTGGAGATGATGAGGAACTC+GGG | 0.577198 | 4.1:-17232259 | MS.gene08369:CDS |
| GTAGCCTTGTTGAAAGACCT+TGG | 0.580182 | 4.1:-17237380 | MS.gene08369:CDS |
| CTTCAATGGAAGACTTCTTG+TGG | 0.580242 | 4.1:-17229137 | MS.gene08369:CDS |
| TATGACAAACTTTGAGGTGG+TGG | 0.581509 | 4.1:+17227345 | None:intergenic |
| TGTGAAGGAACCAGAGCTGC+TGG | 0.583150 | 4.1:+17228709 | None:intergenic |
| ATGATCATACTAGCTGGTCC+AGG | 0.583245 | 4.1:-17237601 | MS.gene08369:CDS |
| GGAGGAACTTGTAGTAACTT+GGG | 0.585618 | 4.1:+17230551 | None:intergenic |
| ATATATAAGAGGGGAAACAA+TGG | 0.588945 | 4.1:-17228809 | MS.gene08369:CDS |
| AAAACGTCGCTGTTGCTTGG+GGG | 0.590953 | 4.1:-17237434 | MS.gene08369:CDS |
| GAATAAGTTATCATCAGCTA+AGG | 0.591134 | 4.1:-17233517 | MS.gene08369:intron |
| CAGACGTGATCCCGAACGCA+AGG | 0.591474 | 4.1:+17236900 | None:intergenic |
| GACGGCAGAGCATCCAACAT+AGG | 0.594632 | 4.1:+17229544 | None:intergenic |
| TTAAATGACATTGAAGGTGA+AGG | 0.595505 | 4.1:-17232197 | MS.gene08369:CDS |
| TATGGTACTCATCATCGGCT+GGG | 0.600265 | 4.1:-17238885 | MS.gene08369:CDS |
| GGCAGAATCAGCAGAAACAG+AGG | 0.601053 | 4.1:-17227677 | MS.gene08369:CDS |
| TTTGCAAGGACAGCTTTCAA+GGG | 0.602190 | 4.1:-17236418 | MS.gene08369:CDS |
| TGAGCAAAGCGACAGTGTAA+GGG | 0.603045 | 4.1:+17243244 | None:intergenic |
| TAGGAAGCTTAACCATAGGA+GGG | 0.603732 | 4.1:+17229584 | None:intergenic |
| TGAAGCTGAAGCTGAAAGCA+GGG | 0.603810 | 4.1:+17243386 | None:intergenic |
| GTCACATAGGGGCTCAGATG+AGG | 0.604387 | 4.1:+17230603 | None:intergenic |
| CGTTAACAAACTTCTGATCG+TGG | 0.604443 | 4.1:+17227380 | None:intergenic |
| TGGTGAACTTGGAGATGATG+AGG | 0.606363 | 4.1:-17232267 | MS.gene08369:CDS |
| GAAGGATATGTCAAACCTCA+AGG | 0.608024 | 4.1:-17228754 | MS.gene08369:CDS |
| AGTGGTCCACGAACTGAAGA+CGG | 0.608054 | 4.1:+17229526 | None:intergenic |
| GGGGAAGTAATAGTTTGGAA+AGG | 0.611142 | 4.1:+17228899 | None:intergenic |
| TCATCGGCTGGGAAAGATTG+GGG | 0.611442 | 4.1:-17238874 | MS.gene08369:CDS |
| ATTGTTGTCGAGCAATTCTG+TGG | 0.612263 | 4.1:+17230437 | None:intergenic |
| CTTGGTGCAGTCAAATCAGA+AGG | 0.612515 | 4.1:-17227291 | MS.gene08369:CDS |
| ATCAATGAAAGTGTTGTAGA+GGG | 0.612681 | 4.1:-17230107 | MS.gene08369:CDS |
| GTTAATTTCTCAAATATCTG+GGG | 0.614184 | 4.1:+17228880 | None:intergenic |
| AAGCTTCGATTCCCATGTGA+AGG | 0.617052 | 4.1:+17228694 | None:intergenic |
| ACAAGAAGTCTTCCATTGAA+GGG | 0.617197 | 4.1:+17229139 | None:intergenic |
| TCTGATTTGACTGCACCAAG+TGG | 0.618381 | 4.1:+17227294 | None:intergenic |
| AAAATGTAACTAACTTCGGT+GGG | 0.618493 | 4.1:+17230515 | None:intergenic |
| GTTAAGCACCATAATTGAAG+GGG | 0.621552 | 4.1:-17237345 | MS.gene08369:CDS |
| GCTGAGCATATATGGGAGCA+TGG | 0.622094 | 4.1:-17227613 | MS.gene08369:intron |
| ATCTGGTTGAAGCTAGAGCA+AGG | 0.622880 | 4.1:-17227848 | MS.gene08369:CDS |
| ACTGGGAGATGCTTGATGAA+GGG | 0.625192 | 4.1:-17230687 | MS.gene08369:CDS |
| GGCACCAAGGTCTTTCAACA+AGG | 0.628942 | 4.1:+17237376 | None:intergenic |
| TCTTGGAGAGACCTTCAACT+GGG | 0.632984 | 4.1:-17237048 | MS.gene08369:CDS |
| ACCACTTGTAAGCGGTACAA+AGG | 0.633296 | 4.1:-17229509 | MS.gene08369:CDS |
| AGGAACCAGAGCTGCTGGTG+CGG | 0.633962 | 4.1:+17228714 | None:intergenic |
| AACAAACTTCTGATCGTGGG+AGG | 0.634561 | 4.1:+17227384 | None:intergenic |
| GTTAACAAACTTCTGATCGT+GGG | 0.634598 | 4.1:+17227381 | None:intergenic |
| TAATATCCTAATGCTATCAG+TGG | 0.634949 | 4.1:-17230644 | MS.gene08369:CDS |
| GAGCCCCTATGTGACTGGAA+AGG | 0.639123 | 4.1:-17230595 | MS.gene08369:CDS |
| AAAAGAACATTGGAGTGAAG+GGG | 0.640108 | 4.1:-17227254 | MS.gene08369:CDS |
| GTTCGTGGACCACTTGTAAG+CGG | 0.642715 | 4.1:-17229517 | MS.gene08369:CDS |
| TTTATAGGCTCAAGAGAGTG+CGG | 0.648228 | 4.1:-17236561 | MS.gene08369:intron |
| CCAAGTGGACGACTTTGACG+TGG | 0.649192 | 4.1:+17227309 | None:intergenic |
| TGGTTGGTTTAGCGTTCGGG+TGG | 0.652099 | 4.1:-17233740 | MS.gene08369:intron |
| AGGATCCAAGAGCAATGCCA+AGG | 0.652380 | 4.1:+17243220 | None:intergenic |
| CAGCTCTGGTTCCTTCACAT+GGG | 0.654821 | 4.1:-17228705 | MS.gene08369:CDS |
| TTGTTGTCGAGCAATTCTGT+GGG | 0.658504 | 4.1:+17230438 | None:intergenic |
| AAACCTTTCCAGTCACATAG+GGG | 0.659439 | 4.1:+17230592 | None:intergenic |
| AGAAATATATCTCTTCACTG+TGG | 0.659537 | 4.1:+17232223 | None:intergenic |
| TTGAAGAAGATATCATTGTG+AGG | 0.660404 | 4.1:-17227146 | MS.gene08369:CDS |
| GTGGGAACATACTTGACTGG+AGG | 0.673571 | 4.1:+17230533 | None:intergenic |
| AATGACCATATATATAAGAG+GGG | 0.673850 | 4.1:-17228818 | MS.gene08369:CDS |
| AACCGATAGTGAAAGTGACA+AGG | 0.676612 | 4.1:+17234725 | None:intergenic |
| TCACTTTCAGATGCACGATG+AGG | 0.681415 | 4.1:+17232167 | None:intergenic |
| GGATATGACAAACTTTGAGG+TGG | 0.695636 | 4.1:+17227342 | None:intergenic |
| CATATGCATAGAGAAGCAAG+AGG | 0.695865 | 4.1:+17234868 | None:intergenic |
| GAAAGCAGGGAAAAGGAAAG+CGG | 0.699197 | 4.1:+17243399 | None:intergenic |
| GGTCTTTATGAAGTGCTGAG+TGG | 0.701975 | 4.1:-17229252 | MS.gene08369:CDS |
| AAGGAAGCAATGAAATTACG+TGG | 0.710321 | 4.1:-17229490 | MS.gene08369:CDS |
| ATCTGAAAGTGATAGCAACG+TGG | 0.773185 | 4.1:-17232156 | MS.gene08369:CDS |
| GAAGTGTAATATGAACTGTG+TGG | 0.823690 | 4.1:+17233548 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 17227095 | 17243436 | 17227095 | ID=MS.gene08369 |
| chr4.1 | mRNA | 17227095 | 17243436 | 17227095 | ID=MS.gene08369.t1;Parent=MS.gene08369 |
| chr4.1 | exon | 17243217 | 17243436 | 17243217 | ID=MS.gene08369.t1.exon1;Parent=MS.gene08369.t1 |
| chr4.1 | CDS | 17243217 | 17243436 | 17243217 | ID=cds.MS.gene08369.t1;Parent=MS.gene08369.t1 |
| chr4.1 | exon | 17238859 | 17238909 | 17238859 | ID=MS.gene08369.t1.exon2;Parent=MS.gene08369.t1 |
| chr4.1 | CDS | 17238859 | 17238909 | 17238859 | ID=cds.MS.gene08369.t1;Parent=MS.gene08369.t1 |
| chr4.1 | exon | 17238587 | 17238678 | 17238587 | ID=MS.gene08369.t1.exon3;Parent=MS.gene08369.t1 |
| chr4.1 | CDS | 17238587 | 17238678 | 17238587 | ID=cds.MS.gene08369.t1;Parent=MS.gene08369.t1 |
| chr4.1 | exon | 17237561 | 17237638 | 17237561 | ID=MS.gene08369.t1.exon4;Parent=MS.gene08369.t1 |
| chr4.1 | CDS | 17237561 | 17237638 | 17237561 | ID=cds.MS.gene08369.t1;Parent=MS.gene08369.t1 |
| chr4.1 | exon | 17237326 | 17237483 | 17237326 | ID=MS.gene08369.t1.exon5;Parent=MS.gene08369.t1 |
| chr4.1 | CDS | 17237326 | 17237483 | 17237326 | ID=cds.MS.gene08369.t1;Parent=MS.gene08369.t1 |
| chr4.1 | exon | 17237008 | 17237109 | 17237008 | ID=MS.gene08369.t1.exon6;Parent=MS.gene08369.t1 |
| chr4.1 | CDS | 17237008 | 17237109 | 17237008 | ID=cds.MS.gene08369.t1;Parent=MS.gene08369.t1 |
| chr4.1 | exon | 17236817 | 17236934 | 17236817 | ID=MS.gene08369.t1.exon7;Parent=MS.gene08369.t1 |
| chr4.1 | CDS | 17236817 | 17236934 | 17236817 | ID=cds.MS.gene08369.t1;Parent=MS.gene08369.t1 |
| chr4.1 | exon | 17236524 | 17236576 | 17236524 | ID=MS.gene08369.t1.exon8;Parent=MS.gene08369.t1 |
| chr4.1 | CDS | 17236524 | 17236576 | 17236524 | ID=cds.MS.gene08369.t1;Parent=MS.gene08369.t1 |
| chr4.1 | exon | 17236388 | 17236453 | 17236388 | ID=MS.gene08369.t1.exon9;Parent=MS.gene08369.t1 |
| chr4.1 | CDS | 17236388 | 17236453 | 17236388 | ID=cds.MS.gene08369.t1;Parent=MS.gene08369.t1 |
| chr4.1 | exon | 17235621 | 17235665 | 17235621 | ID=MS.gene08369.t1.exon10;Parent=MS.gene08369.t1 |
| chr4.1 | CDS | 17235621 | 17235665 | 17235621 | ID=cds.MS.gene08369.t1;Parent=MS.gene08369.t1 |
| chr4.1 | exon | 17235402 | 17235454 | 17235402 | ID=MS.gene08369.t1.exon11;Parent=MS.gene08369.t1 |
| chr4.1 | CDS | 17235402 | 17235454 | 17235402 | ID=cds.MS.gene08369.t1;Parent=MS.gene08369.t1 |
| chr4.1 | exon | 17234722 | 17234906 | 17234722 | ID=MS.gene08369.t1.exon12;Parent=MS.gene08369.t1 |
| chr4.1 | CDS | 17234722 | 17234906 | 17234722 | ID=cds.MS.gene08369.t1;Parent=MS.gene08369.t1 |
| chr4.1 | exon | 17233703 | 17233750 | 17233703 | ID=MS.gene08369.t1.exon13;Parent=MS.gene08369.t1 |
| chr4.1 | CDS | 17233703 | 17233750 | 17233703 | ID=cds.MS.gene08369.t1;Parent=MS.gene08369.t1 |
| chr4.1 | exon | 17233518 | 17233625 | 17233518 | ID=MS.gene08369.t1.exon14;Parent=MS.gene08369.t1 |
| chr4.1 | CDS | 17233518 | 17233625 | 17233518 | ID=cds.MS.gene08369.t1;Parent=MS.gene08369.t1 |
| chr4.1 | exon | 17232114 | 17232345 | 17232114 | ID=MS.gene08369.t1.exon15;Parent=MS.gene08369.t1 |
| chr4.1 | CDS | 17232114 | 17232345 | 17232114 | ID=cds.MS.gene08369.t1;Parent=MS.gene08369.t1 |
| chr4.1 | exon | 17230422 | 17230724 | 17230422 | ID=MS.gene08369.t1.exon16;Parent=MS.gene08369.t1 |
| chr4.1 | CDS | 17230422 | 17230724 | 17230422 | ID=cds.MS.gene08369.t1;Parent=MS.gene08369.t1 |
| chr4.1 | exon | 17230058 | 17230155 | 17230058 | ID=MS.gene08369.t1.exon17;Parent=MS.gene08369.t1 |
| chr4.1 | CDS | 17230058 | 17230155 | 17230058 | ID=cds.MS.gene08369.t1;Parent=MS.gene08369.t1 |
| chr4.1 | exon | 17229742 | 17229873 | 17229742 | ID=MS.gene08369.t1.exon18;Parent=MS.gene08369.t1 |
| chr4.1 | CDS | 17229742 | 17229873 | 17229742 | ID=cds.MS.gene08369.t1;Parent=MS.gene08369.t1 |
| chr4.1 | exon | 17229423 | 17229632 | 17229423 | ID=MS.gene08369.t1.exon19;Parent=MS.gene08369.t1 |
| chr4.1 | CDS | 17229423 | 17229632 | 17229423 | ID=cds.MS.gene08369.t1;Parent=MS.gene08369.t1 |
| chr4.1 | exon | 17229134 | 17229340 | 17229134 | ID=MS.gene08369.t1.exon20;Parent=MS.gene08369.t1 |
| chr4.1 | CDS | 17229134 | 17229340 | 17229134 | ID=cds.MS.gene08369.t1;Parent=MS.gene08369.t1 |
| chr4.1 | exon | 17228674 | 17228935 | 17228674 | ID=MS.gene08369.t1.exon21;Parent=MS.gene08369.t1 |
| chr4.1 | CDS | 17228674 | 17228935 | 17228674 | ID=cds.MS.gene08369.t1;Parent=MS.gene08369.t1 |
| chr4.1 | exon | 17227614 | 17227909 | 17227614 | ID=MS.gene08369.t1.exon22;Parent=MS.gene08369.t1 |
| chr4.1 | CDS | 17227614 | 17227909 | 17227614 | ID=cds.MS.gene08369.t1;Parent=MS.gene08369.t1 |
| chr4.1 | exon | 17227095 | 17227415 | 17227095 | ID=MS.gene08369.t1.exon23;Parent=MS.gene08369.t1 |
| chr4.1 | CDS | 17227095 | 17227415 | 17227095 | ID=cds.MS.gene08369.t1;Parent=MS.gene08369.t1 |
| Gene Sequence |
| Protein sequence |
