AlfalfaGEDB | MS.gene08479

M. sativa cultivar XinJiangDaYe / MS.gene08479

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20 PF08263.15 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08479.t1	XP_013444501.1	92	1066	85	0	1	1066	23	1088	0.00E+00	1351.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08479.t1	Q9C7S5	61.8	1059	390	10	11	1066	36	1082	8.3e-207	722.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08479.t1	A0A072TMU1	92.0	1066	85	0	1	1066	23	1088	0.0e+00	1351.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050996	MS.gene08479	0.871276	7.73E-67	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08479.t1	MTR_8g023720	96.435	1066	38	0	1	1066	23	1088	0.0	2080
MS.gene08479.t1	MTR_2g078810	47.186	1066	512	20	9	1061	21	1048	0.0	830
MS.gene08479.t1	MTR_2g078810	47.097	1068	510	20	9	1061	41	1068	0.0	830
MS.gene08479.t1	MTR_1g100787	34.183	1059	558	20	89	1058	257	1265	8.52e-149	477
MS.gene08479.t1	MTR_1g100787	30.904	741	388	22	13	669	13	713	6.11e-54	206
MS.gene08479.t1	MTR_2g070020	33.629	1127	605	35	9	1058	22	1082	1.84e-142	456
MS.gene08479.t1	MTR_3g009400	32.461	1146	628	26	48	1066	60	1186	8.40e-140	451
MS.gene08479.t1	MTR_2g437730	32.093	1156	626	31	9	1046	7	1121	1.61e-136	441
MS.gene08479.t1	MTR_1g047670	32.081	1091	596	28	48	1055	55	1083	5.97e-133	431
MS.gene08479.t1	MTR_1g047670	30.000	520	301	9	180	654	53	554	4.32e-39	158

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08479.t1	AT1G72300	59.207	1059	417	11	11	1066	36	1082	0.0	1201
MS.gene08479.t1	AT5G53890	46.979	1026	493	19	48	1061	42	1028	0.0	798
MS.gene08479.t1	AT2G02220	45.679	1053	494	20	17	1061	26	1008	0.0	775
MS.gene08479.t1	AT1G17240	51.064	705	321	10	9	711	38	720	0.0	649
MS.gene08479.t1	AT1G17240	51.064	705	321	10	9	711	33	715	0.0	648
MS.gene08479.t1	AT1G17250	50.892	729	337	12	6	727	35	749	0.0	645
MS.gene08479.t1	AT5G07280	35.183	1009	572	20	89	1061	230	1192	1.85e-151	482
MS.gene08479.t1	AT5G07280	31.803	610	315	14	117	653	88	669	5.71e-52	199
MS.gene08479.t1	AT5G07280	29.184	490	237	10	269	654	79	562	9.57e-34	141
MS.gene08479.t1	AT2G01950	33.892	1133	624	29	24	1066	37	1134	1.66e-150	478

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Find 237 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCTTGGAGAGCATCA+GGG	0.620484	8.2:-72250953	None:intergenic
AAACAGCGGCGTTCATCCTG+AGG	0.622839	8.2:+72251905	MS.gene08479:CDS
AAACCAGCGAGTCCTCTAGA+AGG	0.466094	8.2:-72249890	None:intergenic
AAACGGGAATTTCACCGGAT+AGG	0.611436	8.2:-72251533	None:intergenic
AAACTCGCAATTGTGCGGTT+TGG	0.448547	8.2:+72251668	MS.gene08479:CDS
AACAGCACAACACGAGAATC+TGG	0.425661	8.2:+72252172	MS.gene08479:CDS
AACAGGTTGAAGAATATCAC+TGG	0.566653	8.2:+72250892	MS.gene08479:CDS
AACCAAGTTTGAAATTTGAT+CGG	0.467490	8.2:-72251478	None:intergenic
AACCACCTAACCCTAAAACT+TGG	0.478132	8.2:-72251035	None:intergenic
AACGCCGCTGTTTGAGTATG+GGG	0.574749	8.2:-72251895	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAACTTTCAGGAGATTT+AGG	+	chr8.2:72252107-72252126	MS.gene08479:CDS	30.0%
AAGATGAGAAAGAGATTCAA+GGG	-	chr8.2:72249939-72249958	None:intergenic	30.0%
AATAGGACCTATCAAATGAT+TGG	-	chr8.2:72250530-72250549	None:intergenic	30.0%
ACAGTGTCAATAATGTTATC+AGG	-	chr8.2:72251809-72251828	None:intergenic	30.0%
ATGCAAGCCTAAAATTTCAA+GGG	+	chr8.2:72252637-72252656	MS.gene08479:CDS	30.0%
ATGTAATCTAGTGAGTGAAA+CGG	-	chr8.2:72251553-72251572	None:intergenic	30.0%
CAAGTGACTTACAATCATAA+AGG	-	chr8.2:72250780-72250799	None:intergenic	30.0%
CAATTCTGCTATAAGATTCT+TGG	+	chr8.2:72250279-72250298	MS.gene08479:CDS	30.0%
CAGTGTCAATAATGTTATCA+GGG	-	chr8.2:72251808-72251827	None:intergenic	30.0%
CTTCATGTCAATAATTTGAC+TGG	+	chr8.2:72250592-72250611	MS.gene08479:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	72249665	72252865	72249665	ID=MS.gene08479
chr8.2	mRNA	72249665	72252865	72249665	ID=MS.gene08479.t1;Parent=MS.gene08479
chr8.2	exon	72249665	72252865	72249665	ID=MS.gene08479.t1.exon1;Parent=MS.gene08479.t1
chr8.2	CDS	72249665	72252865	72249665	ID=cds.MS.gene08479.t1;Parent=MS.gene08479.t1

Gene Sequence

>MS.gene08479

ATGTCCTCTTTCAAAAAAACAACCTTTTTTCTAACCTTATTCATTGTCCATGTCTCTTCTTCTTGTAACCAACTTGACAAAGATTCTCTCTTATCTTTCTCTTCAAATTTCTCAACTTTTTCACCTCACCTACCACCTCTTAACTGGTCTCCTTCCATTGATTGTTGCAGTTGGGAAGGTATAACTTGTGATCAAAATAATCACCATGTTACACATCTTTTCTTACCTTCTAGAGGACTCGCTGGTTTCATTTCATTTTCTCTTATAACTTCCCTTGAATCTCTTTCTCATCTTAATCTTTCACATAATAGATTTTATGGTAATCTTCAAAATCACTTTTTTGATCTTCTTAATCAACTTTTAGTCCTTGATTTGAGTTATAATCACTTCTCTGGTGAATTACCACCTTTTGTTAAACCTAGCAATGGAACTGGAAATGGAAATAGTAGTGTTATTCAGGAATTGGATTTGTCTAGTAATTCATTCAATGGAACATTACCAGTTTCGCTGATTCAGTATCTTGCAGAAGGAGGGAATTTGATTTCTTTCAATGTAAGTAACAACAGTTTCACAGGTCAAATTCCAATTTCAATCTTTTGTGTTAATGAATTGAACAATTCTGCTATAAGATTCTTGGATTATTCTTCCAATGATTTTAGTGGTAATATTGAGAAAGGTTTAGGAGCATGTTCTAAGCTTGAGAGATTTAGGGCTGGTTTCAATGTTCTAGCAGGGGAAATACCAATTGATATTTATGATGCTGTTTCACTCATTGAAATATCATTGCCACTTAATAAGATTGATGGATCAATTGGTGATAGAGTTGTCAATCTTGTCAATCTCACTGTTTTGGAGCTTTATTCCAATCATTTGATAGGTCCTATTCCTAGGGATATTGGTAGACTTTCCAAGTTGGAAAAGTTACTTCTTCATGTCAATAATTTGACTGGTACAATTCCACCATCTTTGATGAATTGTAACAATCTTGTTGTGTTGAATTTGAGGGTGAATAATTTGGAAGGAAATCTATCGGCGTTCAATTTCGCGGGATTTGGAAGACTTGCTACGCTTGATCTTGGCAACAATGGGTTTAGCGGTGTTTTACCGCCGACCCTTTATGATTGTAAGTCACTTGCAGCATTGAGGCTTGCAACTAATAAACTTGAGGGACAGGTTTCATCTGAGATACTTAGACTCGAGTCTCTTTCGTTTTTATCGATTTCTAATAACAGGTTGAAGAATATCACTGGTGCTCTTAGAATACTCACTGGCCTTAAGAAGCTCAGTACCCTGATGCTCTCCAAGAATTTTTACAATGAAATGATACCACATGGTGTGAACATCATTGACCCTGATGGATTCCAAAATATCCAAGTTTTAGGGTTAGGTGGTTGTAATTTCACCGGTCAGATACCAAGTTGGCTTGAAAATTTAAAGAAGCTTGAGGCCGTAGACCTGTCCTTTAATCAATTCAGTGGTTCAATTCCTTCCTGGTTAGGTACACTTCCTCAGCTTTTCTACATAGACTTGTCTGTGAACCTACTTACAGGTCTGTTTCCTATCGAGCTCACAAAACTCCCTGCACTAGCATCGCAACAAGCAAATGATAAAGTAGAAAGGACATACTTAGAGTTACCTGTCTTTGCTAATGCCAACAATGTTTCTTTGTTGCAATACAATCAACTTTCAAGCCTTCCACCAGCAATTTATCTCGGAACCAATCACCTCAGTGGCAGCATCCCGATTGAGATTGGCCAACTGAAAGCTCTTCTTCAGCTGGACCTGAAGAAAAACGACTTCTCTGGCAATATACCCGATCAAATTTCAAACTTGGTTAACCTAGAGAAACTAGACCTCTCGGGAAACAACCTATCCGGTGAAATTCCCGTTTCACTCACTAGATTACATTTCTTGTCCTTTTTCAGTGTAGCACACAATAATCTTCAAGGACAGATACCAACTGGTGGTCAGTTTAATACTTTTTCCAACACCAGCTTTGAAGGAAACTCGCAATTGTGCGGTTTGGCTATTCAGCACCCTTGTTCTTCTCAACAAAATACTACTAGTACTTCAGTTCGTAGCAAACCCAGCAAAAAACTAATAGTAATACTTATTATCGCTGTCTCTTTCGGCATAGCTACCCTGATAACATTATTGACACTGTGGATACTCTCCAAGAGAAGGGTTAATCCCAGAGGAGATTCTGATAAGATTGAATTGGAATCAATTTCCCCATACTCAAACAGCGGCGTTCATCCTGAGGTTGATAAGGAGGCTAGCCTGGTGGTATTGTTTCCAAACAAAAATAATGAAGCCAAGGATCTTTCCATATTAGAGATCATAAAAGCCACTGAACATTTCAGTCAGGCAAATATAATAGGATGTGGCGGTTTTGGTTTGGTTTATAAAGCATCATTTCAAAATGGAACTAAGCTAGCCATCAAGAAACTTTCAGGAGATTTAGGCCTCATGGAAAGGGAATTTAAAGCAGAAGTAGAGGCTTTGTCAACAGCACAACACGAGAATCTGGTATCGTTGCAAGGCTACTGCGTGCACGATGGTTATCGGCTACTCATATATAATTACATGGAGAATGGAAGTCTCGATTACTGGCTGCATGAAAAGTCTGACGGTGCATCTCAACTCGATTGGCCGACTCGTTTGAAGATCGCACAGGGAGCAGGTTGCGGTTTGGCCTATTTGCATATGATTTGTGATCCACACATCGTGCACCGCGATATAAAGTCAAGCAATATACTCCTCAATGATAAGTTTGAGGCGCGTGTTGCTGATTTCGGGTTGTCGCGGTTGATTCTTCCGTATCAGACTCATGTTACAACGGAACTTGTAGGTACATTAGGTTACATTCCTCCGGAGTATGGGCAAGCCTGGGTGGCTACTCTTAGAGGAGATGTGTACAGCTTTGGTGTTGTAATGCTTGAGCTTCTCACTGGAAGGAGACCTATGGATGTATGCAAGCCTAAAATTTCAAGGGAGTTGGTCAGTTGGGTTCAACAGATGAAAAACGAAGGAAAACAAGAACAAGTATTCGACTCAAATCTACGAGGGAAGGGATTTGAAGGAGAGATGCTGCAGGTACTTGATATAGCATGCATGTGTGTTAATATGAATCCTTTCAAGAGACCAACCATCAGAGAAGTTGTTGAATGGCTAAATAATGTTCACAAAAATAAAGACTAG

Protein sequence

>MS.gene08479.t1

MSSFKKTTFFLTLFIVHVSSSCNQLDKDSLLSFSSNFSTFSPHLPPLNWSPSIDCCSWEGITCDQNNHHVTHLFLPSRGLAGFISFSLITSLESLSHLNLSHNRFYGNLQNHFFDLLNQLLVLDLSYNHFSGELPPFVKPSNGTGNGNSSVIQELDLSSNSFNGTLPVSLIQYLAEGGNLISFNVSNNSFTGQIPISIFCVNELNNSAIRFLDYSSNDFSGNIEKGLGACSKLERFRAGFNVLAGEIPIDIYDAVSLIEISLPLNKIDGSIGDRVVNLVNLTVLELYSNHLIGPIPRDIGRLSKLEKLLLHVNNLTGTIPPSLMNCNNLVVLNLRVNNLEGNLSAFNFAGFGRLATLDLGNNGFSGVLPPTLYDCKSLAALRLATNKLEGQVSSEILRLESLSFLSISNNRLKNITGALRILTGLKKLSTLMLSKNFYNEMIPHGVNIIDPDGFQNIQVLGLGGCNFTGQIPSWLENLKKLEAVDLSFNQFSGSIPSWLGTLPQLFYIDLSVNLLTGLFPIELTKLPALASQQANDKVERTYLELPVFANANNVSLLQYNQLSSLPPAIYLGTNHLSGSIPIEIGQLKALLQLDLKKNDFSGNIPDQISNLVNLEKLDLSGNNLSGEIPVSLTRLHFLSFFSVAHNNLQGQIPTGGQFNTFSNTSFEGNSQLCGLAIQHPCSSQQNTTSTSVRSKPSKKLIVILIIAVSFGIATLITLLTLWILSKRRVNPRGDSDKIELESISPYSNSGVHPEVDKEASLVVLFPNKNNEAKDLSILEIIKATEHFSQANIIGCGGFGLVYKASFQNGTKLAIKKLSGDLGLMEREFKAEVEALSTAQHENLVSLQGYCVHDGYRLLIYNYMENGSLDYWLHEKSDGASQLDWPTRLKIAQGAGCGLAYLHMICDPHIVHRDIKSSNILLNDKFEARVADFGLSRLILPYQTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGVVMLELLTGRRPMDVCKPKISRELVSWVQQMKNEGKQEQVFDSNLRGKGFEGEMLQVLDIACMCVNMNPFKRPTIREVVEWLNNVHKNKD