Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08549.t1 | XP_013446634.1 | 98.4 | 379 | 6 | 0 | 1 | 379 | 1 | 379 | 3.50E-220 | 773.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08549.t1 | A0A072TTY8 | 98.4 | 379 | 6 | 0 | 1 | 379 | 1 | 379 | 2.5e-220 | 773.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051102 | MS.gene08549 | 0.803126 | 4.05E-49 | -1.69E-46 |
| MS.gene058638 | MS.gene08549 | 0.820482 | 6.70E-53 | -1.69E-46 |
| MS.gene058639 | MS.gene08549 | 0.817558 | 3.10E-52 | -1.69E-46 |
| MS.gene061006 | MS.gene08549 | 0.812912 | 3.34E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08549.t1 | MTR_8g085850 | 98.417 | 379 | 6 | 0 | 1 | 379 | 1 | 379 | 0.0 | 774 |
| MS.gene08549.t1 | MTR_8g085850 | 96.042 | 379 | 6 | 1 | 1 | 379 | 1 | 370 | 0.0 | 749 |
| MS.gene08549.t1 | MTR_8g085850 | 94.545 | 385 | 6 | 2 | 1 | 379 | 1 | 376 | 0.0 | 743 |
| MS.gene08549.t1 | MTR_4g088785 | 39.259 | 270 | 152 | 4 | 114 | 375 | 120 | 385 | 6.65e-61 | 205 |
| MS.gene08549.t1 | MTR_2g085170 | 37.269 | 271 | 157 | 5 | 114 | 375 | 181 | 447 | 1.55e-56 | 194 |
| MS.gene08549.t1 | MTR_2g013690 | 37.868 | 272 | 155 | 5 | 114 | 375 | 158 | 425 | 8.75e-55 | 189 |
| MS.gene08549.t1 | MTR_8g055930 | 36.803 | 269 | 145 | 7 | 114 | 368 | 117 | 374 | 4.84e-50 | 173 |
| MS.gene08549.t1 | MTR_1g096320 | 36.667 | 270 | 156 | 7 | 114 | 374 | 351 | 614 | 1.07e-49 | 178 |
| MS.gene08549.t1 | MTR_1g096320 | 36.296 | 270 | 157 | 6 | 114 | 374 | 345 | 608 | 1.08e-49 | 178 |
| MS.gene08549.t1 | MTR_8g055930 | 36.803 | 269 | 145 | 7 | 114 | 368 | 117 | 374 | 1.74e-49 | 173 |
| MS.gene08549.t1 | MTR_1g021670 | 35.814 | 215 | 134 | 2 | 155 | 368 | 171 | 382 | 1.60e-41 | 152 |
| MS.gene08549.t1 | MTR_2g019450 | 35.135 | 222 | 137 | 6 | 159 | 376 | 117 | 335 | 1.29e-34 | 133 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08549.t1 | AT4G38500 | 70.526 | 380 | 106 | 3 | 1 | 379 | 1 | 375 | 0.0 | 563 |
| MS.gene08549.t1 | AT1G28240 | 40.000 | 270 | 150 | 4 | 114 | 375 | 168 | 433 | 5.24e-63 | 211 |
| MS.gene08549.t1 | AT1G53040 | 37.269 | 271 | 158 | 5 | 114 | 375 | 140 | 407 | 5.65e-57 | 192 |
| MS.gene08549.t1 | AT1G53040 | 37.269 | 271 | 158 | 5 | 114 | 375 | 140 | 407 | 2.10e-56 | 192 |
| MS.gene08549.t1 | AT1G53040 | 37.269 | 271 | 158 | 5 | 114 | 375 | 140 | 407 | 2.10e-56 | 192 |
| MS.gene08549.t1 | AT1G53040 | 37.269 | 271 | 158 | 5 | 114 | 375 | 140 | 407 | 5.93e-56 | 192 |
| MS.gene08549.t1 | AT1G53040 | 37.269 | 271 | 158 | 5 | 114 | 375 | 140 | 407 | 5.93e-56 | 192 |
| MS.gene08549.t1 | AT1G53040 | 37.269 | 271 | 158 | 5 | 114 | 375 | 140 | 407 | 5.93e-56 | 192 |
| MS.gene08549.t1 | AT4G09630 | 35.316 | 269 | 161 | 5 | 114 | 374 | 337 | 600 | 4.44e-51 | 181 |
| MS.gene08549.t1 | AT4G09630 | 35.316 | 269 | 161 | 5 | 114 | 374 | 352 | 615 | 8.08e-51 | 181 |
| MS.gene08549.t1 | AT2G02910 | 36.047 | 258 | 152 | 5 | 114 | 369 | 117 | 363 | 1.59e-50 | 176 |
| MS.gene08549.t1 | AT2G02910 | 36.047 | 258 | 152 | 5 | 114 | 369 | 117 | 363 | 1.59e-50 | 176 |
| MS.gene08549.t1 | AT1G34550 | 36.667 | 270 | 156 | 7 | 114 | 374 | 283 | 546 | 5.83e-50 | 177 |
| MS.gene08549.t1 | AT1G34550 | 36.667 | 270 | 156 | 7 | 114 | 374 | 377 | 640 | 9.82e-50 | 178 |
| MS.gene08549.t1 | AT5G42660 | 31.873 | 251 | 158 | 4 | 127 | 368 | 129 | 375 | 2.57e-42 | 154 |
| MS.gene08549.t1 | AT5G46220 | 32.127 | 221 | 144 | 4 | 159 | 375 | 118 | 336 | 4.67e-33 | 129 |
Find 87 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGAAAATGGGTGGGAATT+TGG | 0.216004 | 4.3:-15041221 | MS.gene08549:CDS |
| TTCGGTCTCCTCTACGATTC+AGG | 0.222504 | 4.3:+15042957 | None:intergenic |
| GGAACCTTCCCATTCCTTCT+TGG | 0.250532 | 4.3:+15041162 | None:intergenic |
| CCCTCTGTTTCCAACTTAGA+TGG | 0.289303 | 4.3:+15041642 | None:intergenic |
| TTGCATTATTGTTTCATATA+TGG | 0.295124 | 4.3:-15042690 | MS.gene08549:CDS |
| CTCAAGCACAATATAGTATA+TGG | 0.297313 | 4.3:-15041113 | MS.gene08549:CDS |
| AAAATCTTACTGTGAAGTTT+TGG | 0.300865 | 4.3:+15041893 | None:intergenic |
| AAGACAGTGCTGGTGGAAAA+TGG | 0.314469 | 4.3:-15041233 | MS.gene08549:CDS |
| ATGAAGATTGTTTGGAAGAA+AGG | 0.317826 | 4.3:-15042766 | MS.gene08549:CDS |
| TTCCTTCTTGGTTCATCATA+AGG | 0.337709 | 4.3:+15041174 | None:intergenic |
| TATATGGATCGATGGTAAAA+TGG | 0.347228 | 4.3:-15041097 | MS.gene08549:CDS |
| TCATACTCATAGGGTAATCT+TGG | 0.351324 | 4.3:+15042785 | None:intergenic |
| CCAAGGTGGCGGTGCTGAAA+TGG | 0.351450 | 4.3:-15041439 | MS.gene08549:CDS |
| TGCAAATTTGTTGTTGCATC+TGG | 0.352480 | 4.3:-15041387 | MS.gene08549:CDS |
| CAAACAATCTTCATACTCAT+AGG | 0.357259 | 4.3:+15042775 | None:intergenic |
| GACCGAAGGCTTATATTTGA+TGG | 0.363931 | 4.3:+15041333 | None:intergenic |
| TTTCATGTGAAGATCAATAA+GGG | 0.369903 | 4.3:+15040230 | None:intergenic |
| CTTGAGGACTTTGATTAGTT+CGG | 0.386357 | 4.3:+15042939 | None:intergenic |
| CTATGAGTATGAAGATTGTT+TGG | 0.391719 | 4.3:-15042774 | MS.gene08549:CDS |
| AATGACTGGGGACTATCATT+TGG | 0.416204 | 4.3:+15041680 | None:intergenic |
| CTTTACTTTGCAGATACCTA+TGG | 0.418949 | 4.3:-15040350 | MS.gene08549:intron |
| GGGTCATTGAAAAGAGGAAT+CGG | 0.440433 | 4.3:+15041782 | None:intergenic |
| TTTGTTCGATTGGTTCTTGT+AGG | 0.451618 | 4.3:-15042742 | MS.gene08549:CDS |
| CATACTCATAGGGTAATCTT+GGG | 0.452966 | 4.3:+15042786 | None:intergenic |
| ATCATTTGGAATCTCATCTT+CGG | 0.461359 | 4.3:+15041694 | None:intergenic |
| TACACCATGTTAGACACTTA+CGG | 0.465973 | 4.3:-15041923 | MS.gene08549:CDS |
| CCATTTCAGCACCGCCACCT+TGG | 0.484766 | 4.3:+15041439 | None:intergenic |
| TTGTCGGAAGTTCTTCGAGT+AGG | 0.505208 | 4.3:+15041743 | None:intergenic |
| TATGATGAACCAAGAAGGAA+TGG | 0.506816 | 4.3:-15041171 | MS.gene08549:CDS |
| TTATCAGGGTCATTGAAAAG+AGG | 0.508697 | 4.3:+15041776 | None:intergenic |
| GAAGGCTTATATTTGATGGT+TGG | 0.512680 | 4.3:+15041337 | None:intergenic |
| GAAGAAAGGATTTGTTCGAT+TGG | 0.513330 | 4.3:-15042752 | MS.gene08549:CDS |
| TGTCGGAAGTTCTTCGAGTA+GGG | 0.514918 | 4.3:+15041744 | None:intergenic |
| GCATCACCGTAGTATATATG+AGG | 0.519031 | 4.3:-15040292 | MS.gene08549:CDS |
| AACCATCAAATATAAGCCTT+CGG | 0.519958 | 4.3:-15041335 | MS.gene08549:CDS |
| CATATACTATATTGTGCTTG+AGG | 0.530273 | 4.3:+15041114 | None:intergenic |
| CTTTCTTATGGTGGTTGATG+AGG | 0.530607 | 4.3:-15041295 | MS.gene08549:CDS |
| CTTATATTTGATGGTTGGTG+AGG | 0.533258 | 4.3:+15041342 | None:intergenic |
| GTTCGATTGGTTCTTGTAGG+AGG | 0.533545 | 4.3:-15042739 | MS.gene08549:CDS |
| TTCTTGTAGGAGGCATCTTG+TGG | 0.534438 | 4.3:-15042729 | MS.gene08549:CDS |
| CAAACTGAAGTCGAATATGA+AGG | 0.536496 | 4.3:-15041609 | MS.gene08549:intron |
| ATCCATTGCTTATCCTTGAG+AGG | 0.537955 | 4.3:-15041062 | MS.gene08549:intron |
| AATCAAAGTCCTCAAGCTAA+AGG | 0.538960 | 4.3:-15042932 | MS.gene08549:intron |
| TTAACATATTTAATGTCTGT+AGG | 0.542344 | 4.3:+15041414 | None:intergenic |
| AAACAATCTTCATACTCATA+GGG | 0.542519 | 4.3:+15042776 | None:intergenic |
| TGTTAATCACCTTTAGCTTG+AGG | 0.545035 | 4.3:+15042923 | None:intergenic |
| AGACAGTGCTGGTGGAAAAT+GGG | 0.552076 | 4.3:-15041232 | MS.gene08549:CDS |
| GGTCATTGAAAAGAGGAATC+GGG | 0.552084 | 4.3:+15041783 | None:intergenic |
| GATCGATGGTAAAATGGAGC+TGG | 0.562303 | 4.3:-15041091 | MS.gene08549:CDS |
| ATGTATGCTTCCCTCGCCAT+AGG | 0.564145 | 4.3:+15040334 | None:intergenic |
| ATGATGAACCAAGAAGGAAT+GGG | 0.578603 | 4.3:-15041170 | MS.gene08549:CDS |
| AAAGACATTAGTACCTCTCA+AGG | 0.586604 | 4.3:+15041049 | None:intergenic |
| TACCTCTCAAGGATAAGCAA+TGG | 0.591774 | 4.3:+15041060 | None:intergenic |
| AACCTTATGATGAACCAAGA+AGG | 0.594367 | 4.3:-15041176 | MS.gene08549:CDS |
| CATGTGTAACAAAGATAGCA+AGG | 0.594625 | 4.3:-15041948 | MS.gene08549:CDS |
| CAGCCTCCTCATATATACTA+CGG | 0.594788 | 4.3:+15040286 | None:intergenic |
| GCCATCTAAGTTGGAAACAG+AGG | 0.596922 | 4.3:-15041643 | MS.gene08549:CDS |
| CAATATAGTATATGGATCGA+TGG | 0.599167 | 4.3:-15041105 | MS.gene08549:CDS |
| CATGAAAATATATTATTACG+AGG | 0.601665 | 4.3:-15040214 | MS.gene08549:CDS |
| TTTGCAGATACCTATGGCGA+GGG | 0.607683 | 4.3:-15040344 | MS.gene08549:intron |
| GTACACTGTGGATTTATCCA+AGG | 0.610351 | 4.3:-15041456 | MS.gene08549:CDS |
| ATGAAAATATATTATTACGA+GGG | 0.617211 | 4.3:-15040213 | MS.gene08549:CDS |
| AGGTATCTCTGAAATTCATG+AGG | 0.620375 | 4.3:-15041275 | MS.gene08549:CDS |
| CCATCTAAGTTGGAAACAGA+GGG | 0.624638 | 4.3:-15041642 | MS.gene08549:CDS |
| TGAAAATATATTATTACGAG+GGG | 0.626637 | 4.3:-15040212 | MS.gene08549:CDS |
| CAGTGCTGGTGGAAAATGGG+TGG | 0.627288 | 4.3:-15041229 | MS.gene08549:CDS |
| CTTTGCAGATACCTATGGCG+AGG | 0.627617 | 4.3:-15040345 | MS.gene08549:intron |
| AGTGCTGGTGGAAAATGGGT+GGG | 0.629765 | 4.3:-15041228 | MS.gene08549:CDS |
| TGTGGATTTATCCAAGGTGG+CGG | 0.630667 | 4.3:-15041450 | MS.gene08549:CDS |
| TTCATGTGAAGATCAATAAG+GGG | 0.638820 | 4.3:+15040231 | None:intergenic |
| CACTGTGGATTTATCCAAGG+TGG | 0.649390 | 4.3:-15041453 | MS.gene08549:CDS |
| TCACCGTAGTATATATGAGG+AGG | 0.655353 | 4.3:-15040289 | MS.gene08549:CDS |
| GTGGAAGAAGACAGTGCTGG+TGG | 0.659638 | 4.3:-15041240 | MS.gene08549:CDS |
| GAATTTGAATCAAATATGGA+GGG | 0.659901 | 4.3:-15043007 | None:intergenic |
| AGGAGGCTGATGCAAACAAG+AGG | 0.661285 | 4.3:-15040272 | MS.gene08549:CDS |
| GGTATCTCTGAAATTCATGA+GGG | 0.662047 | 4.3:-15041274 | MS.gene08549:CDS |
| TTCCTAAAATAATAACACAC+AGG | 0.669290 | 4.3:-15041143 | MS.gene08549:CDS |
| TGAACCAAGAAGGAATGGGA+AGG | 0.676745 | 4.3:-15041166 | MS.gene08549:CDS |
| GTGATGCTTATGTTGAGCAA+TGG | 0.678793 | 4.3:+15040308 | None:intergenic |
| ATTACGAGGGGATGAAACCA+TGG | 0.679419 | 4.3:-15040200 | MS.gene08549:CDS |
| TTCACCCCTTAGGTACACTG+TGG | 0.682969 | 4.3:-15041468 | MS.gene08549:intron |
| CATGAGGGAAAATACTACTG+TGG | 0.685868 | 4.3:-15041259 | MS.gene08549:CDS |
| AAGTCCGTAAGTGTCTAACA+TGG | 0.687949 | 4.3:+15041919 | None:intergenic |
| ATACTCATAGGGTAATCTTG+GGG | 0.692428 | 4.3:+15042787 | None:intergenic |
| TCTTTGCGCCTGAATCGTAG+AGG | 0.704517 | 4.3:-15042965 | MS.gene08549:CDS |
| TCTAAGTTGGAAACAGAGGG+AGG | 0.714380 | 4.3:-15041639 | MS.gene08549:CDS |
| ACTGTGGAAGAAGACAGTGC+TGG | 0.718968 | 4.3:-15041243 | MS.gene08549:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATCTGTTTATTTAAAT+AGG | - | chr4.3:15042190-15042209 | MS.gene08549:intron | 10.0% |
| !!! | ACTTAATTAATTTTGAAAAT+TGG | - | chr4.3:15040626-15040645 | MS.gene08549:intron | 10.0% |
| !!! | CTTAATTAATTTTGAAAATT+GGG | - | chr4.3:15040627-15040646 | MS.gene08549:intron | 10.0% |
| !! | ATAAATGTTAAGATTCTTTA+TGG | - | chr4.3:15042618-15042637 | MS.gene08549:intron | 15.0% |
| !! | ATGAAAATATATTATTACGA+GGG | - | chr4.3:15042954-15042973 | MS.gene08549:CDS | 15.0% |
| !!! | AAAAATATCTAAAATCTGAT+TGG | - | chr4.3:15040998-15041017 | MS.gene08549:intron | 15.0% |
| !!! | TAAATTTTTGACAATTTTGT+CGG | + | chr4.3:15041443-15041462 | None:intergenic | 15.0% |
| !! | ATACACGAAAATATACAATT+TGG | + | chr4.3:15042594-15042613 | None:intergenic | 20.0% |
| !! | CATGAAAATATATTATTACG+AGG | - | chr4.3:15042953-15042972 | MS.gene08549:CDS | 20.0% |
| !! | TAAATAGTAACATACTTGTT+GGG | - | chr4.3:15042645-15042664 | MS.gene08549:intron | 20.0% |
| !! | TGAAAATATATTATTACGAG+GGG | - | chr4.3:15042955-15042974 | MS.gene08549:CDS | 20.0% |
| !! | TTAACATATTTAATGTCTGT+AGG | + | chr4.3:15041756-15041775 | None:intergenic | 20.0% |
| !! | TTGCATTATTGTTTCATATA+TGG | - | chr4.3:15040477-15040496 | MS.gene08549:intron | 20.0% |
| !!! | CCAAAAAAATTCATATTTTC+TGG | - | chr4.3:15040536-15040555 | MS.gene08549:intron | 20.0% |
| !!! | CCAGAAAATATGAATTTTTT+TGG | + | chr4.3:15040539-15040558 | None:intergenic | 20.0% |
| ! | AAACAATCTTCATACTCATA+GGG | + | chr4.3:15040394-15040413 | None:intergenic | 25.0% |
| ! | ATAATGAAGTCCAAAAACAA+TGG | + | chr4.3:15041317-15041336 | None:intergenic | 25.0% |
| ! | ATTACACAATAAACATTCGT+AGG | - | chr4.3:15042310-15042329 | MS.gene08549:intron | 25.0% |
| ! | ATTATGACAATCAACTTAAG+AGG | + | chr4.3:15040606-15040625 | None:intergenic | 25.0% |
| ! | ATTCGTATTACCATAAAGAT+TGG | + | chr4.3:15042158-15042177 | None:intergenic | 25.0% |
| ! | GTAAATAGTAACATACTTGT+TGG | - | chr4.3:15042644-15042663 | MS.gene08549:intron | 25.0% |
| ! | GTAGTACTTATTAGTTACTT+TGG | - | chr4.3:15040825-15040844 | MS.gene08549:intron | 25.0% |
| ! | TATTGTGTAATTAACTGACA+AGG | + | chr4.3:15042301-15042320 | None:intergenic | 25.0% |
| ! | TCTCTAACTAAGAAATTACA+GGG | + | chr4.3:15040875-15040894 | None:intergenic | 25.0% |
| ! | TTATGACAATCAACTTAAGA+GGG | + | chr4.3:15040605-15040624 | None:intergenic | 25.0% |
| ! | TTCCTAAAATAATAACACAC+AGG | - | chr4.3:15042024-15042043 | MS.gene08549:intron | 25.0% |
| ! | TTCGTATTACCATAAAGATT+GGG | + | chr4.3:15042157-15042176 | None:intergenic | 25.0% |
| ! | TTCTCTAACTAAGAAATTAC+AGG | + | chr4.3:15040876-15040895 | None:intergenic | 25.0% |
| ! | TTTCATGTGAAGATCAATAA+GGG | + | chr4.3:15042940-15042959 | None:intergenic | 25.0% |
| !! | AAAACTTCACAGTAAGATTT+TGG | - | chr4.3:15041276-15041295 | MS.gene08549:CDS | 25.0% |
| !! | AAAATCTTACTGTGAAGTTT+TGG | + | chr4.3:15041277-15041296 | None:intergenic | 25.0% |
| !! | ATTTGAAGGGTTCAATTTTA+TGG | - | chr4.3:15042340-15042359 | MS.gene08549:intron | 25.0% |
| !! | TAGGGATAACTATTTTATCA+GGG | + | chr4.3:15041408-15041427 | None:intergenic | 25.0% |
| !! | TTTTCATGTGAAGATCAATA+AGG | + | chr4.3:15042941-15042960 | None:intergenic | 25.0% |
| !! | TTTTTCCTTTCATTCTTTGA+TGG | - | chr4.3:15040955-15040974 | MS.gene08549:intron | 25.0% |
| !!! | AAAAAGTATGCTTTTTCGAA+AGG | - | chr4.3:15041094-15041113 | MS.gene08549:CDS | 25.0% |
| !!! | AACCTGTGTGTTATTATTTT+AGG | + | chr4.3:15042029-15042048 | None:intergenic | 25.0% |
| !!! | ATTTTGAAAATTGGGTAGAA+TGG | - | chr4.3:15040635-15040654 | MS.gene08549:intron | 25.0% |
| !!! | CTTATTAGTTACTTTGGAAT+AGG | - | chr4.3:15040831-15040850 | MS.gene08549:intron | 25.0% |
| !!! | GAAACTTTTTTGCTTTCTTA+TGG | - | chr4.3:15041860-15041879 | MS.gene08549:intron | 25.0% |
| !!! | TTGGAGATTCATTACTTTTT+TGG | - | chr4.3:15040753-15040772 | MS.gene08549:intron | 25.0% |
| !!! | TTTTGAAAATTGGGTAGAAT+GGG | - | chr4.3:15040636-15040655 | MS.gene08549:intron | 25.0% |
| AAAAAAGTTTCTTTGACCGA+AGG | + | chr4.3:15041851-15041870 | None:intergenic | 30.0% | |
| AACCATCAAATATAAGCCTT+CGG | - | chr4.3:15041832-15041851 | MS.gene08549:intron | 30.0% | |
| AAGCTATCTCAAGAAACAAA+AGG | + | chr4.3:15042231-15042250 | None:intergenic | 30.0% | |
| ATATCTATCATCAGATCAGA+AGG | + | chr4.3:15042772-15042791 | None:intergenic | 30.0% | |
| ATGAAGATTGTTTGGAAGAA+AGG | - | chr4.3:15040401-15040420 | MS.gene08549:intron | 30.0% | |
| ATGTAGCATTAGTGCATAAT+AGG | - | chr4.3:15042693-15042712 | MS.gene08549:CDS | 30.0% | |
| CAAACAATCTTCATACTCAT+AGG | + | chr4.3:15040395-15040414 | None:intergenic | 30.0% | |
| CAATATAGTATATGGATCGA+TGG | - | chr4.3:15042062-15042081 | MS.gene08549:intron | 30.0% | |
| CATATACTATATTGTGCTTG+AGG | + | chr4.3:15042056-15042075 | None:intergenic | 30.0% | |
| CTATGAGTATGAAGATTGTT+TGG | - | chr4.3:15040393-15040412 | MS.gene08549:intron | 30.0% | |
| CTCAAGCACAATATAGTATA+TGG | - | chr4.3:15042054-15042073 | MS.gene08549:intron | 30.0% | |
| GAATAGGAATGTAAGGATTA+AGG | - | chr4.3:15040847-15040866 | MS.gene08549:intron | 30.0% | |
| TAGTTTATGCCCAATCTTTA+TGG | - | chr4.3:15042145-15042164 | MS.gene08549:intron | 30.0% | |
| TATATGGATCGATGGTAAAA+TGG | - | chr4.3:15042070-15042089 | MS.gene08549:intron | 30.0% | |
| TATCTCAAGAAACAAAAGGA+CGG | + | chr4.3:15042227-15042246 | None:intergenic | 30.0% | |
| TTCATGTGAAGATCAATAAG+GGG | + | chr4.3:15042939-15042958 | None:intergenic | 30.0% | |
| ! | AAACAGCATTTAAAGCTGAA+CGG | - | chr4.3:15040729-15040748 | MS.gene08549:intron | 30.0% |
| ! | ATCATTTGGAATCTCATCTT+CGG | + | chr4.3:15041476-15041495 | None:intergenic | 30.0% |
| ! | GAAACATTTTGCATTAATGG+AGG | + | chr4.3:15041671-15041690 | None:intergenic | 30.0% |
| ! | GATATAGGATTGTTTTCTTC+AGG | - | chr4.3:15040350-15040369 | MS.gene08549:intron | 30.0% |
| ! | GTAGGGATAACTATTTTATC+AGG | + | chr4.3:15041409-15041428 | None:intergenic | 30.0% |
| ! | TGGGAAACATTTTGCATTAA+TGG | + | chr4.3:15041674-15041693 | None:intergenic | 30.0% |
| ! | TTACTAGTGATTTGTGTTTG+TGG | - | chr4.3:15042449-15042468 | MS.gene08549:intron | 30.0% |
| !! | CTCTCATTTTTCTCGTATAT+AGG | - | chr4.3:15042375-15042394 | MS.gene08549:intron | 30.0% |
| !! | GTCTTTTTATTTGAACTCCA+TGG | + | chr4.3:15042987-15043006 | None:intergenic | 30.0% |
| !! | TACTTTGGAATAGGAATGTA+AGG | - | chr4.3:15040840-15040859 | MS.gene08549:intron | 30.0% |
| !! | TGAATTCCTAGTTTGTTTGT+TGG | - | chr4.3:15040314-15040333 | MS.gene08549:CDS | 30.0% |
| !! | TTTCTTGAGATAGCTTGTTA+AGG | - | chr4.3:15042235-15042254 | MS.gene08549:intron | 30.0% |
| !! | TTTTGGCTAACCTGATAAAA+AGG | + | chr4.3:15040522-15040541 | None:intergenic | 30.0% |
| !!! | ACTTTTTTGCTTTCTTATGG+TGG | - | chr4.3:15041863-15041882 | MS.gene08549:intron | 30.0% |
| !!! | CAATTTTTAGTACCAAGACA+TGG | + | chr4.3:15040911-15040930 | None:intergenic | 30.0% |
| AAAGACATTAGTACCTCTCA+AGG | + | chr4.3:15042121-15042140 | None:intergenic | 35.0% | |
| AACCTTATGATGAACCAAGA+AGG | - | chr4.3:15041991-15042010 | MS.gene08549:intron | 35.0% | |
| AATAGAGGATAATCACTTGG+TGG | - | chr4.3:15041052-15041071 | MS.gene08549:intron | 35.0% | |
| AATCAAAGTCCTCAAGCTAA+AGG | - | chr4.3:15040235-15040254 | MS.gene08549:CDS | 35.0% | |
| AGGAATAGAGGATAATCACT+TGG | - | chr4.3:15041049-15041068 | MS.gene08549:intron | 35.0% | |
| ATAAATCCACAGTGTACCTA+AGG | + | chr4.3:15041708-15041727 | None:intergenic | 35.0% | |
| ATAATGCATCAGCTTCATGA+TGG | + | chr4.3:15042413-15042432 | None:intergenic | 35.0% | |
| ATACTCATAGGGTAATCTTG+GGG | + | chr4.3:15040383-15040402 | None:intergenic | 35.0% | |
| ATAGAGGATAATCACTTGGT+GGG | - | chr4.3:15041053-15041072 | MS.gene08549:intron | 35.0% | |
| ATGATGAACCAAGAAGGAAT+GGG | - | chr4.3:15041997-15042016 | MS.gene08549:intron | 35.0% | |
| CAAACTGAAGTCGAATATGA+AGG | - | chr4.3:15041558-15041577 | MS.gene08549:intron | 35.0% | |
| CATACTCATAGGGTAATCTT+GGG | + | chr4.3:15040384-15040403 | None:intergenic | 35.0% | |
| CATGTGTAACAAAGATAGCA+AGG | - | chr4.3:15041219-15041238 | MS.gene08549:CDS | 35.0% | |
| CTCAACCATCAAAGAATGAA+AGG | + | chr4.3:15040963-15040982 | None:intergenic | 35.0% | |
| CTTTACTTTGCAGATACCTA+TGG | - | chr4.3:15042817-15042836 | MS.gene08549:CDS | 35.0% | |
| GTGTTTGTGGATTTCCTTTA+CGG | - | chr4.3:15042462-15042481 | MS.gene08549:intron | 35.0% | |
| TAAATCCACAGTGTACCTAA+GGG | + | chr4.3:15041707-15041726 | None:intergenic | 35.0% | |
| TACACCATGTTAGACACTTA+CGG | - | chr4.3:15041244-15041263 | MS.gene08549:CDS | 35.0% | |
| TATGATGAACCAAGAAGGAA+TGG | - | chr4.3:15041996-15042015 | MS.gene08549:intron | 35.0% | |
| TCATACTCATAGGGTAATCT+TGG | + | chr4.3:15040385-15040404 | None:intergenic | 35.0% | |
| TCCAAAAAGAGGAAATGACT+GGG | + | chr4.3:15041503-15041522 | None:intergenic | 35.0% | |
| TGAAGTCCAAAAACAATGGA+TGG | + | chr4.3:15041313-15041332 | None:intergenic | 35.0% | |
| TTATCAGGGTCATTGAAAAG+AGG | + | chr4.3:15041394-15041413 | None:intergenic | 35.0% | |
| TTCCTTCTTGGTTCATCATA+AGG | + | chr4.3:15041996-15042015 | None:intergenic | 35.0% | |
| ! | AAACATAGCGATTTTCTGCT+TGG | - | chr4.3:15041188-15041207 | MS.gene08549:CDS | 35.0% |
| ! | AACAGCATTTAAAGCTGAAC+GGG | - | chr4.3:15040730-15040749 | MS.gene08549:intron | 35.0% |
| ! | AGACACTTTTGTAATCAGAG+CGG | - | chr4.3:15042567-15042586 | MS.gene08549:intron | 35.0% |
| ! | AGGATTGTTTTCTTCAGGAA+GGG | - | chr4.3:15040355-15040374 | MS.gene08549:intron | 35.0% |
| ! | CAAGCAATAGTTTTCCGTAA+AGG | + | chr4.3:15042479-15042498 | None:intergenic | 35.0% |
| ! | CTTATATTTGATGGTTGGTG+AGG | + | chr4.3:15041828-15041847 | None:intergenic | 35.0% |
| ! | CTTGAGGACTTTGATTAGTT+CGG | + | chr4.3:15040231-15040250 | None:intergenic | 35.0% |
| ! | GAAGAAAGGATTTGTTCGAT+TGG | - | chr4.3:15040415-15040434 | MS.gene08549:intron | 35.0% |
| ! | GAAGGCTTATATTTGATGGT+TGG | + | chr4.3:15041833-15041852 | None:intergenic | 35.0% |
| ! | TAGGATTGTTTTCTTCAGGA+AGG | - | chr4.3:15040354-15040373 | MS.gene08549:intron | 35.0% |
| ! | TAGTAACATACTTGTTGGGA+TGG | - | chr4.3:15042649-15042668 | MS.gene08549:intron | 35.0% |
| ! | TCATTCTTTGATGGTTGAGA+GGG | - | chr4.3:15040964-15040983 | MS.gene08549:intron | 35.0% |
| ! | TCTAGTGTCTCCTTTTTATC+AGG | - | chr4.3:15040509-15040528 | MS.gene08549:intron | 35.0% |
| ! | TTCATTCTTTGATGGTTGAG+AGG | - | chr4.3:15040963-15040982 | MS.gene08549:intron | 35.0% |
| ! | TTGTCTCCATCCATTGTTTT+TGG | - | chr4.3:15041304-15041323 | MS.gene08549:CDS | 35.0% |
| ! | TTTGTTCGATTGGTTCTTGT+AGG | - | chr4.3:15040425-15040444 | MS.gene08549:intron | 35.0% |
| !! | AGGTATCTCTGAAATTCATG+AGG | - | chr4.3:15041892-15041911 | MS.gene08549:intron | 35.0% |
| !! | CGATTTTTGAAGAACATCTC+CGG | - | chr4.3:15040571-15040590 | MS.gene08549:intron | 35.0% |
| !! | GGTATCTCTGAAATTCATGA+GGG | - | chr4.3:15041893-15041912 | MS.gene08549:intron | 35.0% |
| !! | TGCAAATTTGTTGTTGCATC+TGG | - | chr4.3:15041780-15041799 | MS.gene08549:CDS | 35.0% |
| !! | TGTTAATCACCTTTAGCTTG+AGG | + | chr4.3:15040247-15040266 | None:intergenic | 35.0% |
| AAATCCACAGTGTACCTAAG+GGG | + | chr4.3:15041706-15041725 | None:intergenic | 40.0% | |
| AAGTCCGTAAGTGTCTAACA+TGG | + | chr4.3:15041251-15041270 | None:intergenic | 40.0% | |
| AATGACTGGGGACTATCATT+TGG | + | chr4.3:15041490-15041509 | None:intergenic | 40.0% | |
| ACTTAAGAGGGATTAACGAC+CGG | + | chr4.3:15040593-15040612 | None:intergenic | 40.0% | |
| ATCAATAGCAGACCATGTCT+TGG | - | chr4.3:15040896-15040915 | MS.gene08549:intron | 40.0% | |
| ATCCATTGCTTATCCTTGAG+AGG | - | chr4.3:15042105-15042124 | MS.gene08549:intron | 40.0% | |
| CAGCCTCCTCATATATACTA+CGG | + | chr4.3:15042884-15042903 | None:intergenic | 40.0% | |
| CATGAGGGAAAATACTACTG+TGG | - | chr4.3:15041908-15041927 | MS.gene08549:CDS | 40.0% | |
| CCAAAAAGAGGAAATGACTG+GGG | + | chr4.3:15041502-15041521 | None:intergenic | 40.0% | |
| CGTAGGCATAGCAATTTGAA+GGG | - | chr4.3:15042327-15042346 | MS.gene08549:intron | 40.0% | |
| CTCCAAAAAGAGGAAATGAC+TGG | + | chr4.3:15041504-15041523 | None:intergenic | 40.0% | |
| GACCGAAGGCTTATATTTGA+TGG | + | chr4.3:15041837-15041856 | None:intergenic | 40.0% | |
| GCATCACCGTAGTATATATG+AGG | - | chr4.3:15042875-15042894 | MS.gene08549:intron | 40.0% | |
| GGGTCATTGAAAAGAGGAAT+CGG | + | chr4.3:15041388-15041407 | None:intergenic | 40.0% | |
| GGTCATTGAAAAGAGGAATC+GGG | + | chr4.3:15041387-15041406 | None:intergenic | 40.0% | |
| GTACACTGTGGATTTATCCA+AGG | - | chr4.3:15041711-15041730 | MS.gene08549:CDS | 40.0% | |
| GTGATGCTTATGTTGAGCAA+TGG | + | chr4.3:15042862-15042881 | None:intergenic | 40.0% | |
| TACCTCTCAAGGATAAGCAA+TGG | + | chr4.3:15042110-15042129 | None:intergenic | 40.0% | |
| TCACCGTAGTATATATGAGG+AGG | - | chr4.3:15042878-15042897 | MS.gene08549:intron | 40.0% | |
| TCATCAGATCAGAAGGATCT+CGG | + | chr4.3:15042765-15042784 | None:intergenic | 40.0% | |
| TCGTAGGCATAGCAATTTGA+AGG | - | chr4.3:15042326-15042345 | MS.gene08549:intron | 40.0% | |
| TCTTTAGATTTAGTCGTGCC+TGG | - | chr4.3:15040698-15040717 | MS.gene08549:intron | 40.0% | |
| ! | ACATACTTGTTGGGATGGAA+TGG | - | chr4.3:15042654-15042673 | MS.gene08549:intron | 40.0% |
| ! | ATTCTTTGATGGTTGAGAGG+GGG | - | chr4.3:15040966-15040985 | MS.gene08549:intron | 40.0% |
| ! | CAGTCATTTCCTCTTTTTGG+AGG | - | chr4.3:15041502-15041521 | MS.gene08549:intron | 40.0% |
| ! | CATTCTTTGATGGTTGAGAG+GGG | - | chr4.3:15040965-15040984 | MS.gene08549:intron | 40.0% |
| ! | CCATCTAAGTTGGAAACAGA+GGG | - | chr4.3:15041525-15041544 | MS.gene08549:intron | 40.0% |
| ! | CTTTCTTATGGTGGTTGATG+AGG | - | chr4.3:15041872-15041891 | MS.gene08549:intron | 40.0% |
| ! | GTTGCATCTGGCATTTTTGA+CGG | - | chr4.3:15041792-15041811 | MS.gene08549:intron | 40.0% |
| ! | TGATGCTGCGTGTATCTTTT+AGG | - | chr4.3:15041358-15041377 | MS.gene08549:CDS | 40.0% |
| !! | CTTGAGATAGCTTGTTAAGG+TGG | - | chr4.3:15042238-15042257 | MS.gene08549:intron | 40.0% |
| !! | GGCGATGCAGATTTTGATAT+AGG | - | chr4.3:15040335-15040354 | MS.gene08549:CDS | 40.0% |
| !! | TTTTTGGAGGCCATCTAAGT+TGG | - | chr4.3:15041515-15041534 | MS.gene08549:intron | 40.0% |
| !!! | AATGCTGTTTTTGCAATGCC+AGG | + | chr4.3:15040719-15040738 | None:intergenic | 40.0% |
| ATCGCGATGACTCACTTTGT+AGG | - | chr4.3:15042790-15042809 | MS.gene08549:CDS | 45.0% | |
| ATTACGAGGGGATGAAACCA+TGG | - | chr4.3:15042967-15042986 | MS.gene08549:CDS | 45.0% | |
| CACTGTGGATTTATCCAAGG+TGG | - | chr4.3:15041714-15041733 | MS.gene08549:CDS | 45.0% | |
| CCCTCTGTTTCCAACTTAGA+TGG | + | chr4.3:15041528-15041547 | None:intergenic | 45.0% | |
| CTTAGATGGCCTCCAAAAAG+AGG | + | chr4.3:15041514-15041533 | None:intergenic | 45.0% | |
| GATCGATGGTAAAATGGAGC+TGG | - | chr4.3:15042076-15042095 | MS.gene08549:intron | 45.0% | |
| GCATCGCCAACAAACAAACT+AGG | + | chr4.3:15040323-15040342 | None:intergenic | 45.0% | |
| GTGGAAAATGGGTGGGAATT+TGG | - | chr4.3:15041946-15041965 | MS.gene08549:CDS | 45.0% | |
| TCTAAGTCGCGCTTGTGATT+TGG | - | chr4.3:15042517-15042536 | MS.gene08549:intron | 45.0% | |
| TGAACCAAGAAGGAATGGGA+AGG | - | chr4.3:15042001-15042020 | MS.gene08549:intron | 45.0% | |
| TGTCGGAAGTTCTTCGAGTA+GGG | + | chr4.3:15041426-15041445 | None:intergenic | 45.0% | |
| TGTGGATTTATCCAAGGTGG+CGG | - | chr4.3:15041717-15041736 | MS.gene08549:CDS | 45.0% | |
| TTGTCGGAAGTTCTTCGAGT+AGG | + | chr4.3:15041427-15041446 | None:intergenic | 45.0% | |
| TTTGCAGATACCTATGGCGA+GGG | - | chr4.3:15042823-15042842 | MS.gene08549:CDS | 45.0% | |
| ! | ACTTGTTGGGATGGAATGGA+TGG | - | chr4.3:15042658-15042677 | MS.gene08549:intron | 45.0% |
| ! | CCCCAGTCATTTCCTCTTTT+TGG | - | chr4.3:15041499-15041518 | MS.gene08549:intron | 45.0% |
| ! | CTTGCTATGCGTAGGAATAG+AGG | - | chr4.3:15041037-15041056 | MS.gene08549:intron | 45.0% |
| ! | GCATTTAAAGCTGAACGGGT+TGG | - | chr4.3:15040734-15040753 | MS.gene08549:intron | 45.0% |
| ! | GCCATCTAAGTTGGAAACAG+AGG | - | chr4.3:15041524-15041543 | MS.gene08549:intron | 45.0% |
| ! | GTTCGATTGGTTCTTGTAGG+AGG | - | chr4.3:15040428-15040447 | MS.gene08549:intron | 45.0% |
| ! | TCTAAGTTGGAAACAGAGGG+AGG | - | chr4.3:15041528-15041547 | MS.gene08549:intron | 45.0% |
| !! | AAGACAGTGCTGGTGGAAAA+TGG | - | chr4.3:15041934-15041953 | MS.gene08549:CDS | 45.0% |
| !! | AGACAGTGCTGGTGGAAAAT+GGG | - | chr4.3:15041935-15041954 | MS.gene08549:CDS | 45.0% |
| !! | GATGCAAACTTGCTATGCGT+AGG | - | chr4.3:15041029-15041048 | MS.gene08549:intron | 45.0% |
| !! | TTCTTGTAGGAGGCATCTTG+TGG | - | chr4.3:15040438-15040457 | MS.gene08549:intron | 45.0% |
| ACCTAAGGGGTGAAGCAAGT+GGG | + | chr4.3:15041693-15041712 | None:intergenic | 50.0% | |
| ACTGTGGAAGAAGACAGTGC+TGG | - | chr4.3:15041924-15041943 | MS.gene08549:CDS | 50.0% | |
| AGGAGGCTGATGCAAACAAG+AGG | - | chr4.3:15042895-15042914 | MS.gene08549:intron | 50.0% | |
| ATGTATGCTTCCCTCGCCAT+AGG | + | chr4.3:15042836-15042855 | None:intergenic | 50.0% | |
| CTTTGCAGATACCTATGGCG+AGG | - | chr4.3:15042822-15042841 | MS.gene08549:CDS | 50.0% | |
| GGAACCTTCCCATTCCTTCT+TGG | + | chr4.3:15042008-15042027 | None:intergenic | 50.0% | |
| TACCTAAGGGGTGAAGCAAG+TGG | + | chr4.3:15041694-15041713 | None:intergenic | 50.0% | |
| TCTTTGCGCCTGAATCGTAG+AGG | - | chr4.3:15040202-15040221 | MS.gene08549:CDS | 50.0% | |
| TTCACCCCTTAGGTACACTG+TGG | - | chr4.3:15041699-15041718 | MS.gene08549:CDS | 50.0% | |
| TTCGGTCTCCTCTACGATTC+AGG | + | chr4.3:15040213-15040232 | None:intergenic | 50.0% | |
| ! | GAGGATAATCACTTGGTGGG+AGG | - | chr4.3:15041056-15041075 | MS.gene08549:intron | 50.0% |
| ! | TTGATGGTTGAGAGGGGGTT+TGG | - | chr4.3:15040971-15040990 | MS.gene08549:intron | 50.0% |
| !! | AGTGCTGGTGGAAAATGGGT+GGG | - | chr4.3:15041939-15041958 | MS.gene08549:CDS | 50.0% |
| !! | GTCGCGCTTGTGATTTGGTT+TGG | - | chr4.3:15042522-15042541 | MS.gene08549:intron | 50.0% |
| TCCCACTTGCTTCACCCCTT+AGG | - | chr4.3:15041689-15041708 | MS.gene08549:CDS | 55.0% | |
| ! | GTGGAAGAAGACAGTGCTGG+TGG | - | chr4.3:15041927-15041946 | MS.gene08549:CDS | 55.0% |
| !! | CAGTGCTGGTGGAAAATGGG+TGG | - | chr4.3:15041938-15041957 | MS.gene08549:CDS | 55.0% |
| CCATTTCAGCACCGCCACCT+TGG | + | chr4.3:15041731-15041750 | None:intergenic | 60.0% | |
| ! | CCAAGGTGGCGGTGCTGAAA+TGG | - | chr4.3:15041728-15041747 | MS.gene08549:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 15040175 | 15043014 | 15040175 | ID=MS.gene08549 |
| chr4.3 | mRNA | 15040175 | 15043014 | 15040175 | ID=MS.gene08549.t1;Parent=MS.gene08549 |
| chr4.3 | exon | 15042933 | 15043014 | 15042933 | ID=MS.gene08549.t1.exon1;Parent=MS.gene08549.t1 |
| chr4.3 | CDS | 15042933 | 15043014 | 15042933 | ID=cds.MS.gene08549.t1;Parent=MS.gene08549.t1 |
| chr4.3 | exon | 15042659 | 15042844 | 15042659 | ID=MS.gene08549.t1.exon2;Parent=MS.gene08549.t1 |
| chr4.3 | CDS | 15042659 | 15042844 | 15042659 | ID=cds.MS.gene08549.t1;Parent=MS.gene08549.t1 |
| chr4.3 | exon | 15041903 | 15041971 | 15041903 | ID=MS.gene08549.t1.exon3;Parent=MS.gene08549.t1 |
| chr4.3 | CDS | 15041903 | 15041971 | 15041903 | ID=cds.MS.gene08549.t1;Parent=MS.gene08549.t1 |
| chr4.3 | exon | 15041610 | 15041809 | 15041610 | ID=MS.gene08549.t1.exon4;Parent=MS.gene08549.t1 |
| chr4.3 | CDS | 15041610 | 15041809 | 15041610 | ID=cds.MS.gene08549.t1;Parent=MS.gene08549.t1 |
| chr4.3 | exon | 15041063 | 15041478 | 15041063 | ID=MS.gene08549.t1.exon5;Parent=MS.gene08549.t1 |
| chr4.3 | CDS | 15041063 | 15041478 | 15041063 | ID=cds.MS.gene08549.t1;Parent=MS.gene08549.t1 |
| chr4.3 | exon | 15040175 | 15040359 | 15040175 | ID=MS.gene08549.t1.exon6;Parent=MS.gene08549.t1 |
| chr4.3 | CDS | 15040175 | 15040359 | 15040175 | ID=cds.MS.gene08549.t1;Parent=MS.gene08549.t1 |
| Gene Sequence |
| Protein sequence |
