Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08610.t1 | XP_003606412.1 | 94.2 | 291 | 17 | 0 | 1 | 291 | 1 | 291 | 6.70E-94 | 354 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08610.t1 | Q8LEE9 | 55.2 | 145 | 63 | 2 | 78 | 221 | 44 | 187 | 3.5e-35 | 150.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08610.t1 | G7JPF4 | 94.2 | 291 | 17 | 0 | 1 | 291 | 1 | 291 | 4.8e-94 | 354.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056470 | MS.gene08610 | 0.813269 | 2.79E-51 | -1.69E-46 |
| MS.gene058848 | MS.gene08610 | 0.804522 | 2.08E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08610.t1 | MTR_4g059840 | 92.388 | 289 | 22 | 0 | 1 | 289 | 1 | 289 | 0.0 | 503 |
| MS.gene08610.t1 | MTR_4g059790 | 95.189 | 291 | 14 | 0 | 1 | 291 | 1 | 291 | 1.40e-175 | 486 |
| MS.gene08610.t1 | MTR_4g053380 | 79.522 | 293 | 56 | 3 | 1 | 289 | 2 | 294 | 5.57e-146 | 412 |
| MS.gene08610.t1 | MTR_2g093970 | 57.597 | 283 | 107 | 6 | 9 | 283 | 8 | 285 | 8.36e-96 | 284 |
| MS.gene08610.t1 | MTR_2g017970 | 56.364 | 220 | 86 | 3 | 73 | 291 | 68 | 278 | 2.77e-75 | 231 |
| MS.gene08610.t1 | MTR_8g087450 | 57.143 | 210 | 77 | 3 | 22 | 220 | 17 | 224 | 2.94e-75 | 232 |
| MS.gene08610.t1 | MTR_2g017960 | 55.505 | 218 | 87 | 3 | 73 | 289 | 68 | 276 | 1.48e-72 | 224 |
| MS.gene08610.t1 | MTR_2g093980 | 45.361 | 291 | 142 | 6 | 5 | 289 | 3 | 282 | 6.64e-71 | 221 |
| MS.gene08610.t1 | MTR_2g017950 | 43.831 | 308 | 134 | 10 | 1 | 287 | 1 | 290 | 3.50e-69 | 216 |
| MS.gene08610.t1 | MTR_4g059780 | 55.838 | 197 | 78 | 3 | 30 | 222 | 48 | 239 | 9.31e-67 | 211 |
| MS.gene08610.t1 | MTR_8g087460 | 51.883 | 239 | 89 | 8 | 5 | 220 | 7 | 242 | 1.17e-66 | 211 |
| MS.gene08610.t1 | MTR_8g087470 | 52.301 | 239 | 88 | 8 | 5 | 220 | 7 | 242 | 1.69e-66 | 210 |
| MS.gene08610.t1 | MTR_4g059720 | 50.698 | 215 | 74 | 5 | 11 | 225 | 10 | 192 | 6.28e-59 | 189 |
| MS.gene08610.t1 | MTR_2g093990 | 55.034 | 149 | 66 | 1 | 73 | 221 | 41 | 188 | 7.03e-51 | 168 |
| MS.gene08610.t1 | MTR_7g101080 | 44.937 | 158 | 85 | 2 | 65 | 221 | 32 | 188 | 1.13e-38 | 137 |
| MS.gene08610.t1 | MTR_2g090765 | 37.333 | 225 | 123 | 3 | 66 | 283 | 31 | 244 | 1.26e-30 | 115 |
| MS.gene08610.t1 | MTR_7g075453 | 32.967 | 182 | 115 | 3 | 66 | 247 | 177 | 351 | 4.84e-19 | 86.7 |
| MS.gene08610.t1 | MTR_5g098060 | 29.464 | 224 | 143 | 7 | 72 | 289 | 47 | 261 | 1.70e-16 | 77.8 |
| MS.gene08610.t1 | MTR_5g098420 | 29.442 | 197 | 124 | 7 | 40 | 235 | 167 | 349 | 9.74e-13 | 68.2 |
| MS.gene08610.t1 | MTR_2g437700 | 30.519 | 154 | 100 | 4 | 72 | 221 | 194 | 344 | 6.57e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08610.t1 | AT5G60490 | 54.000 | 150 | 67 | 2 | 73 | 221 | 39 | 187 | 2.81e-47 | 159 |
| MS.gene08610.t1 | AT5G03170 | 47.305 | 167 | 87 | 1 | 66 | 231 | 29 | 195 | 3.17e-47 | 159 |
| MS.gene08610.t1 | AT5G44130 | 36.816 | 201 | 113 | 6 | 72 | 268 | 35 | 225 | 3.21e-28 | 109 |
| MS.gene08610.t1 | AT2G20520 | 36.190 | 210 | 128 | 4 | 52 | 258 | 19 | 225 | 1.14e-27 | 107 |
| MS.gene08610.t1 | AT1G03870 | 32.420 | 219 | 137 | 5 | 72 | 289 | 38 | 246 | 7.46e-26 | 103 |
| MS.gene08610.t1 | AT3G60900 | 29.121 | 182 | 124 | 2 | 66 | 247 | 183 | 359 | 2.50e-16 | 79.0 |
| MS.gene08610.t1 | AT3G46550 | 31.183 | 186 | 114 | 7 | 58 | 233 | 193 | 374 | 3.38e-14 | 72.8 |
| MS.gene08610.t1 | AT2G04780 | 30.263 | 152 | 100 | 3 | 72 | 221 | 45 | 192 | 5.80e-13 | 67.8 |
| MS.gene08610.t1 | AT2G04780 | 30.263 | 152 | 100 | 3 | 72 | 221 | 45 | 192 | 5.80e-13 | 67.8 |
Find 82 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACATTAAGTTCCACCTTTC+CGG | 0.174394 | 4.1:-38931036 | None:intergenic |
| GCTGTATCGGTTGAAGGTTC+TGG | 0.299723 | 4.1:-38931227 | None:intergenic |
| ACCGGGGAAGGCACCATCTT+TGG | 0.311761 | 4.1:+38931202 | MS.gene08610:CDS |
| GTAAATAGCAAGACGTTTAT+CGG | 0.328237 | 4.1:-38931129 | None:intergenic |
| CCAACTCAATTCACAACTAT+TGG | 0.336498 | 4.1:+38930818 | MS.gene08610:CDS |
| ATCTGATGATGTGTCTTTAT+CGG | 0.338588 | 4.1:-38931264 | None:intergenic |
| TCAACAGTGCCTGCGGTGTC+AGG | 0.354935 | 4.1:-38930720 | None:intergenic |
| CGTCTTGCTATTTACAAAGT+TGG | 0.358413 | 4.1:+38931137 | MS.gene08610:CDS |
| ACATTAAGTTCCACCTTTCC+GGG | 0.361148 | 4.1:-38931035 | None:intergenic |
| TAGTGGTGGTTGAATACAAT+AGG | 0.367638 | 4.1:-38930575 | None:intergenic |
| AATGAAGGTACCAATGGTTT+AGG | 0.368336 | 4.1:-38930672 | None:intergenic |
| TGGCAAAGTGCTTCTTCCTA+TGG | 0.388422 | 4.1:+38931157 | MS.gene08610:CDS |
| GCCTTTGCTGTATCGGTTGA+AGG | 0.393378 | 4.1:-38931233 | None:intergenic |
| TCTGATGATGTGTCTTTATC+GGG | 0.411707 | 4.1:-38931263 | None:intergenic |
| ACTTGGACTTGTATTAGCTT+TGG | 0.413681 | 4.1:+38931358 | MS.gene08610:CDS |
| CACCTTTCCGGGTTTAGCTC+CGG | 0.421883 | 4.1:-38931024 | None:intergenic |
| GGCTCTATCAAGGTTGTGTA+TGG | 0.423819 | 4.1:+38931323 | MS.gene08610:CDS |
| AACCCTGTGAGAACACTTGC+CGG | 0.424215 | 4.1:+38931005 | MS.gene08610:CDS |
| GGAAGTGTGAACATATCAAC+TGG | 0.430205 | 4.1:+38931071 | MS.gene08610:CDS |
| GCAGCTGGTGTGGTTGGAGC+TGG | 0.431548 | 4.1:-38930645 | None:intergenic |
| GCCCATCGGAAAGAGAGTTT+AGG | 0.440037 | 4.1:-38930911 | None:intergenic |
| TGTATGCCTTCGCCTTTCTC+AGG | 0.442653 | 4.1:-38930755 | None:intergenic |
| TGGACTTGTATTAGCTTTGG+TGG | 0.449753 | 4.1:+38931361 | MS.gene08610:CDS |
| GAAGTGAACACGACAATCAA+TGG | 0.449825 | 4.1:+38931095 | MS.gene08610:CDS |
| TTTAGGCGCCTTTGCTGTAT+CGG | 0.459218 | 4.1:-38931240 | None:intergenic |
| CCGGATGACAGTGCCTTCTC+AGG | 0.460688 | 4.1:+38930873 | MS.gene08610:CDS |
| AATCCAACTGAAAACAAGTC+TGG | 0.463708 | 4.1:+38931302 | MS.gene08610:CDS |
| GGAGCTGCAGCTGGTGTGGT+TGG | 0.478200 | 4.1:-38930651 | None:intergenic |
| GAACTTAATGTCGTGAGTTA+CGG | 0.484314 | 4.1:+38931047 | MS.gene08610:CDS |
| CCTGAGAAGGCACTGTCATC+CGG | 0.484418 | 4.1:-38930873 | None:intergenic |
| CGTTGCTAAGGCACCGGGGA+AGG | 0.485444 | 4.1:+38931190 | MS.gene08610:CDS |
| GCTGGTAGTGTAGGTTGTAC+AGG | 0.487178 | 4.1:-38930627 | None:intergenic |
| GTGGTTGGAGCTGGTAGTGT+AGG | 0.493589 | 4.1:-38930636 | None:intergenic |
| GCCAAAGATGGTGCCTTCCC+CGG | 0.494928 | 4.1:-38931203 | None:intergenic |
| AGTGGTGGTTGAATACAATA+GGG | 0.497408 | 4.1:-38930574 | None:intergenic |
| CCAATAGTTGTGAATTGAGT+TGG | 0.499317 | 4.1:-38930818 | None:intergenic |
| TTCCTAAACTCTCTTTCCGA+TGG | 0.502985 | 4.1:+38930909 | MS.gene08610:CDS |
| CAACAGTGCCTGCGGTGTCA+GGG | 0.508035 | 4.1:-38930719 | None:intergenic |
| GGTTGTACAGGAGCAGTAGC+AGG | 0.514138 | 4.1:-38930615 | None:intergenic |
| GCTCCGGCAAGTGTTCTCAC+AGG | 0.514999 | 4.1:-38931008 | None:intergenic |
| AAACAAGTCTGGCTCTATCA+AGG | 0.521993 | 4.1:+38931313 | MS.gene08610:CDS |
| CTAGGTGACTCTGGTAATGA+AGG | 0.531327 | 4.1:-38930687 | None:intergenic |
| AAGTGAACACGACAATCAAT+GGG | 0.531816 | 4.1:+38931096 | MS.gene08610:CDS |
| AGTGCCTGCGGTGTCAGGGG+TGG | 0.531927 | 4.1:-38930715 | None:intergenic |
| GCAGGCACTGTTGACATTGT+CGG | 0.533562 | 4.1:+38930729 | MS.gene08610:CDS |
| GAAGGTTCTGGTGCCAAAGA+TGG | 0.536850 | 4.1:-38931215 | None:intergenic |
| GCCTTCTCAGGACTCAAGGC+GGG | 0.537555 | 4.1:+38930885 | MS.gene08610:CDS |
| TGGATTAACAATTCTTGCAC+CGG | 0.540856 | 4.1:+38930854 | MS.gene08610:CDS |
| GATGTGTCTTTATCGGGTTT+AGG | 0.541363 | 4.1:-38931257 | None:intergenic |
| AGCTGCAGCTCCTAAACCAT+TGG | 0.544279 | 4.1:+38930662 | MS.gene08610:CDS |
| CTCCGGCAAGTGTTCTCACA+GGG | 0.544568 | 4.1:-38931007 | None:intergenic |
| TCCTAAACTCTCTTTCCGAT+GGG | 0.544697 | 4.1:+38930910 | MS.gene08610:CDS |
| GTGGAATCACTAGGTGACTC+TGG | 0.548332 | 4.1:-38930696 | None:intergenic |
| CATTGTCGGAATCCTGAGAA+AGG | 0.566305 | 4.1:+38930743 | MS.gene08610:CDS |
| GCAACGGAAAAGAAATCCAT+AGG | 0.570178 | 4.1:-38931173 | None:intergenic |
| GATTCCACCCCTGACACCGC+AGG | 0.578533 | 4.1:+38930711 | MS.gene08610:CDS |
| CACATCATCAGATTCGTCGC+AGG | 0.581324 | 4.1:+38931274 | MS.gene08610:CDS |
| GTGTCAGGGGTGGAATCACT+AGG | 0.582776 | 4.1:-38930705 | None:intergenic |
| TCAAGGTTGTGTATGGAAAG+TGG | 0.583724 | 4.1:+38931330 | MS.gene08610:CDS |
| TCTGGTAATGAAGGTACCAA+TGG | 0.585762 | 4.1:-38930678 | None:intergenic |
| TATGGAAAGTGGATGTCACT+TGG | 0.586667 | 4.1:+38931341 | MS.gene08610:CDS |
| AACAGTGCCTGCGGTGTCAG+GGG | 0.587591 | 4.1:-38930718 | None:intergenic |
| CTTCCCCGGTGCCTTAGCAA+CGG | 0.588968 | 4.1:-38931189 | None:intergenic |
| AACTAGTATTGTAACTGAGA+AGG | 0.595775 | 4.1:-38930550 | None:intergenic |
| AATGGTTTAGGAGCTGCAGC+TGG | 0.597225 | 4.1:-38930660 | None:intergenic |
| TTTAGGAGCTGCAGCTGGTG+TGG | 0.597546 | 4.1:-38930655 | None:intergenic |
| CAGTGCCTTCTCAGGACTCA+AGG | 0.598053 | 4.1:+38930881 | MS.gene08610:CDS |
| CGGAATCCTGAGAAAGGCGA+AGG | 0.598403 | 4.1:+38930749 | MS.gene08610:CDS |
| TGCCGGAGCTAAACCCGGAA+AGG | 0.606244 | 4.1:+38931022 | MS.gene08610:CDS |
| TCCCGCCTTGAGTCCTGAGA+AGG | 0.611208 | 4.1:-38930886 | None:intergenic |
| ACCTTCAACCGATACAGCAA+AGG | 0.611839 | 4.1:+38931232 | MS.gene08610:CDS |
| ACACTTGCCGGAGCTAAACC+CGG | 0.612612 | 4.1:+38931017 | MS.gene08610:CDS |
| CTTAATGTCGTGAGTTACGG+TGG | 0.615053 | 4.1:+38931050 | MS.gene08610:CDS |
| GACAATGTCAACAGTGCCTG+CGG | 0.617535 | 4.1:-38930727 | None:intergenic |
| CGGAGCTAAACCCGGAAAGG+TGG | 0.627000 | 4.1:+38931025 | MS.gene08610:CDS |
| ATACATAGTCTGAAATAACA+TGG | 0.642288 | 4.1:-38930956 | None:intergenic |
| TAATTCAGATAAAGTAGTGG+TGG | 0.645296 | 4.1:-38930589 | None:intergenic |
| TGCCTTCTCAGGACTCAAGG+CGG | 0.646819 | 4.1:+38930884 | MS.gene08610:CDS |
| GAAGTGTGAACATATCAACT+GGG | 0.654476 | 4.1:+38931072 | MS.gene08610:CDS |
| TGATAATTCAGATAAAGTAG+TGG | 0.674305 | 4.1:-38930592 | None:intergenic |
| AAGTGTGAACATATCAACTG+GGG | 0.748931 | 4.1:+38931073 | MS.gene08610:CDS |
| TTTCCGTTGCTAAGGCACCG+GGG | 0.751333 | 4.1:+38931186 | MS.gene08610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TGATAATTCAGATAAAGTAG+TGG | - | chr4.1:38930595-38930614 | None:intergenic | 25.0% |
| !! | ATACATAGTCTGAAATAACA+TGG | - | chr4.1:38930959-38930978 | None:intergenic | 25.0% |
| AACTAGTATTGTAACTGAGA+AGG | - | chr4.1:38930553-38930572 | None:intergenic | 30.0% | |
| GTAAATAGCAAGACGTTTAT+CGG | - | chr4.1:38931132-38931151 | None:intergenic | 30.0% | |
| TAATTCAGATAAAGTAGTGG+TGG | - | chr4.1:38930592-38930611 | None:intergenic | 30.0% | |
| ! | ATCTGATGATGTGTCTTTAT+CGG | - | chr4.1:38931267-38931286 | None:intergenic | 30.0% |
| AAGTGAACACGACAATCAAT+GGG | + | chr4.1:38931096-38931115 | MS.gene08610:CDS | 35.0% | |
| AAGTGTGAACATATCAACTG+GGG | + | chr4.1:38931073-38931092 | MS.gene08610:CDS | 35.0% | |
| AATCCAACTGAAAACAAGTC+TGG | + | chr4.1:38931302-38931321 | MS.gene08610:CDS | 35.0% | |
| AGTGGTGGTTGAATACAATA+GGG | - | chr4.1:38930577-38930596 | None:intergenic | 35.0% | |
| CAACTATTGGCAACAAAAAC+AGG | + | chr4.1:38930831-38930850 | MS.gene08610:CDS | 35.0% | |
| CCAACTCAATTCACAACTAT+TGG | + | chr4.1:38930818-38930837 | MS.gene08610:CDS | 35.0% | |
| CCAATAGTTGTGAATTGAGT+TGG | - | chr4.1:38930821-38930840 | None:intergenic | 35.0% | |
| GAACTTAATGTCGTGAGTTA+CGG | + | chr4.1:38931047-38931066 | MS.gene08610:CDS | 35.0% | |
| GAAGTGTGAACATATCAACT+GGG | + | chr4.1:38931072-38931091 | MS.gene08610:CDS | 35.0% | |
| TAGTGGTGGTTGAATACAAT+AGG | - | chr4.1:38930578-38930597 | None:intergenic | 35.0% | |
| TGGATTAACAATTCTTGCAC+CGG | + | chr4.1:38930854-38930873 | MS.gene08610:CDS | 35.0% | |
| ! | ACTTGGACTTGTATTAGCTT+TGG | + | chr4.1:38931358-38931377 | MS.gene08610:CDS | 35.0% |
| ! | TCTGATGATGTGTCTTTATC+GGG | - | chr4.1:38931266-38931285 | None:intergenic | 35.0% |
| !! | AATGAAGGTACCAATGGTTT+AGG | - | chr4.1:38930675-38930694 | None:intergenic | 35.0% |
| !! | CGTCTTGCTATTTACAAAGT+TGG | + | chr4.1:38931137-38931156 | MS.gene08610:CDS | 35.0% |
| ACATTAAGTTCCACCTTTCC+GGG | - | chr4.1:38931038-38931057 | None:intergenic | 40.0% | |
| CTATTGGCAACAAAAACAGG+TGG | + | chr4.1:38930834-38930853 | MS.gene08610:CDS | 40.0% | |
| GAAGTGAACACGACAATCAA+TGG | + | chr4.1:38931095-38931114 | MS.gene08610:CDS | 40.0% | |
| GACATTAAGTTCCACCTTTC+CGG | - | chr4.1:38931039-38931058 | None:intergenic | 40.0% | |
| GATGTGTCTTTATCGGGTTT+AGG | - | chr4.1:38931260-38931279 | None:intergenic | 40.0% | |
| GCAACGGAAAAGAAATCCAT+AGG | - | chr4.1:38931176-38931195 | None:intergenic | 40.0% | |
| TATGGAAAGTGGATGTCACT+TGG | + | chr4.1:38931341-38931360 | MS.gene08610:CDS | 40.0% | |
| TCAAGGTTGTGTATGGAAAG+TGG | + | chr4.1:38931330-38931349 | MS.gene08610:CDS | 40.0% | |
| TCCTAAACTCTCTTTCCGAT+GGG | + | chr4.1:38930910-38930929 | MS.gene08610:CDS | 40.0% | |
| TTCCTAAACTCTCTTTCCGA+TGG | + | chr4.1:38930909-38930928 | MS.gene08610:CDS | 40.0% | |
| ! | GGAAGTGTGAACATATCAAC+TGG | + | chr4.1:38931071-38931090 | MS.gene08610:CDS | 40.0% |
| ! | GGATTTCTTTTCCGTTGCTA+AGG | + | chr4.1:38931178-38931197 | MS.gene08610:CDS | 40.0% |
| !! | AAACAAGTCTGGCTCTATCA+AGG | + | chr4.1:38931313-38931332 | MS.gene08610:CDS | 40.0% |
| !! | TCTGGTAATGAAGGTACCAA+TGG | - | chr4.1:38930681-38930700 | None:intergenic | 40.0% |
| !! | TGGACTTGTATTAGCTTTGG+TGG | + | chr4.1:38931361-38931380 | MS.gene08610:CDS | 40.0% |
| ACCTTCAACCGATACAGCAA+AGG | + | chr4.1:38931232-38931251 | MS.gene08610:CDS | 45.0% | |
| CATTGTCGGAATCCTGAGAA+AGG | + | chr4.1:38930743-38930762 | MS.gene08610:CDS | 45.0% | |
| CTTAATGTCGTGAGTTACGG+TGG | + | chr4.1:38931050-38931069 | MS.gene08610:CDS | 45.0% | |
| GGCTCTATCAAGGTTGTGTA+TGG | + | chr4.1:38931323-38931342 | MS.gene08610:CDS | 45.0% | |
| ! | CTAGGTGACTCTGGTAATGA+AGG | - | chr4.1:38930690-38930709 | None:intergenic | 45.0% |
| ! | TGGCAAAGTGCTTCTTCCTA+TGG | + | chr4.1:38931157-38931176 | MS.gene08610:CDS | 45.0% |
| ! | TTTAGGCGCCTTTGCTGTAT+CGG | - | chr4.1:38931243-38931262 | None:intergenic | 45.0% |
| !! | GAGCCAGACTTGTTTTCAGT+TGG | - | chr4.1:38931308-38931327 | None:intergenic | 45.0% |
| AACCCTGTGAGAACACTTGC+CGG | + | chr4.1:38931005-38931024 | MS.gene08610:CDS | 50.0% | |
| AATGGTTTAGGAGCTGCAGC+TGG | - | chr4.1:38930663-38930682 | None:intergenic | 50.0% | |
| AGCTGCAGCTCCTAAACCAT+TGG | + | chr4.1:38930662-38930681 | MS.gene08610:CDS | 50.0% | |
| CACATCATCAGATTCGTCGC+AGG | + | chr4.1:38931274-38931293 | MS.gene08610:CDS | 50.0% | |
| GACAATGTCAACAGTGCCTG+CGG | - | chr4.1:38930730-38930749 | None:intergenic | 50.0% | |
| GCCCATCGGAAAGAGAGTTT+AGG | - | chr4.1:38930914-38930933 | None:intergenic | 50.0% | |
| GTGGAATCACTAGGTGACTC+TGG | - | chr4.1:38930699-38930718 | None:intergenic | 50.0% | |
| TGTATGCCTTCGCCTTTCTC+AGG | - | chr4.1:38930758-38930777 | None:intergenic | 50.0% | |
| ! | CAACTCGAGCTTTTGCCCAT+CGG | - | chr4.1:38930928-38930947 | None:intergenic | 50.0% |
| ! | CTTTTCCGTTGCTAAGGCAC+CGG | + | chr4.1:38931184-38931203 | MS.gene08610:CDS | 50.0% |
| ! | GAAGGTTCTGGTGCCAAAGA+TGG | - | chr4.1:38931218-38931237 | None:intergenic | 50.0% |
| ! | GCAGGCACTGTTGACATTGT+CGG | + | chr4.1:38930729-38930748 | MS.gene08610:CDS | 50.0% |
| ! | GCTGGTAGTGTAGGTTGTAC+AGG | - | chr4.1:38930630-38930649 | None:intergenic | 50.0% |
| !! | GCCTTTGCTGTATCGGTTGA+AGG | - | chr4.1:38931236-38931255 | None:intergenic | 50.0% |
| !! | GCTGTATCGGTTGAAGGTTC+TGG | - | chr4.1:38931230-38931249 | None:intergenic | 50.0% |
| !! | TTTTCCGTTGCTAAGGCACC+GGG | + | chr4.1:38931185-38931204 | MS.gene08610:CDS | 50.0% |
| ACACTTGCCGGAGCTAAACC+CGG | + | chr4.1:38931017-38931036 | MS.gene08610:CDS | 55.0% | |
| CAGTGCCTTCTCAGGACTCA+AGG | + | chr4.1:38930881-38930900 | MS.gene08610:CDS | 55.0% | |
| CGGAATCCTGAGAAAGGCGA+AGG | + | chr4.1:38930749-38930768 | MS.gene08610:CDS | 55.0% | |
| CTCCGGCAAGTGTTCTCACA+GGG | - | chr4.1:38931010-38931029 | None:intergenic | 55.0% | |
| GGTTGTACAGGAGCAGTAGC+AGG | - | chr4.1:38930618-38930637 | None:intergenic | 55.0% | |
| GTGTCAGGGGTGGAATCACT+AGG | - | chr4.1:38930708-38930727 | None:intergenic | 55.0% | |
| TGCCTTCTCAGGACTCAAGG+CGG | + | chr4.1:38930884-38930903 | MS.gene08610:CDS | 55.0% | |
| TTTAGGAGCTGCAGCTGGTG+TGG | - | chr4.1:38930658-38930677 | None:intergenic | 55.0% | |
| ! | CACCTTTCCGGGTTTAGCTC+CGG | - | chr4.1:38931027-38931046 | None:intergenic | 55.0% |
| ! | GTGGTTGGAGCTGGTAGTGT+AGG | - | chr4.1:38930639-38930658 | None:intergenic | 55.0% |
| !! | CCTGAGAAGGCACTGTCATC+CGG | - | chr4.1:38930876-38930895 | None:intergenic | 55.0% |
| !! | TTTCCGTTGCTAAGGCACCG+GGG | + | chr4.1:38931186-38931205 | MS.gene08610:CDS | 55.0% |
| CCGGATGACAGTGCCTTCTC+AGG | + | chr4.1:38930873-38930892 | MS.gene08610:CDS | 60.0% | |
| CGGAGCTAAACCCGGAAAGG+TGG | + | chr4.1:38931025-38931044 | MS.gene08610:CDS | 60.0% | |
| CTTCCCCGGTGCCTTAGCAA+CGG | - | chr4.1:38931192-38931211 | None:intergenic | 60.0% | |
| GCCAAAGATGGTGCCTTCCC+CGG | - | chr4.1:38931206-38931225 | None:intergenic | 60.0% | |
| GCCTTCTCAGGACTCAAGGC+GGG | + | chr4.1:38930885-38930904 | MS.gene08610:CDS | 60.0% | |
| GCTCCGGCAAGTGTTCTCAC+AGG | - | chr4.1:38931011-38931030 | None:intergenic | 60.0% | |
| TCAACAGTGCCTGCGGTGTC+AGG | - | chr4.1:38930723-38930742 | None:intergenic | 60.0% | |
| TCCCGCCTTGAGTCCTGAGA+AGG | - | chr4.1:38930889-38930908 | None:intergenic | 60.0% | |
| TGCCGGAGCTAAACCCGGAA+AGG | + | chr4.1:38931022-38931041 | MS.gene08610:CDS | 60.0% | |
| ! | AACAGTGCCTGCGGTGTCAG+GGG | - | chr4.1:38930721-38930740 | None:intergenic | 60.0% |
| ! | CAACAGTGCCTGCGGTGTCA+GGG | - | chr4.1:38930722-38930741 | None:intergenic | 60.0% |
| !! | ACCGGGGAAGGCACCATCTT+TGG | + | chr4.1:38931202-38931221 | MS.gene08610:CDS | 60.0% |
| GATTCCACCCCTGACACCGC+AGG | + | chr4.1:38930711-38930730 | MS.gene08610:CDS | 65.0% | |
| GCAGCTGGTGTGGTTGGAGC+TGG | - | chr4.1:38930648-38930667 | None:intergenic | 65.0% | |
| GGAGCTGCAGCTGGTGTGGT+TGG | - | chr4.1:38930654-38930673 | None:intergenic | 65.0% | |
| !! | CGTTGCTAAGGCACCGGGGA+AGG | + | chr4.1:38931190-38931209 | MS.gene08610:CDS | 65.0% |
| ! | AGTGCCTGCGGTGTCAGGGG+TGG | - | chr4.1:38930718-38930737 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 38930525 | 38931400 | 38930525 | ID=MS.gene08610 |
| chr4.1 | mRNA | 38930525 | 38931400 | 38930525 | ID=MS.gene08610.t1;Parent=MS.gene08610 |
| chr4.1 | exon | 38930525 | 38931400 | 38930525 | ID=MS.gene08610.t1.exon1;Parent=MS.gene08610.t1 |
| chr4.1 | CDS | 38930525 | 38931400 | 38930525 | ID=cds.MS.gene08610.t1;Parent=MS.gene08610.t1 |
| Gene Sequence |
| Protein sequence |
