Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08614.t1 | XP_003606412.1 | 94.5 | 291 | 16 | 0 | 1 | 291 | 1 | 291 | 2.50E-96 | 362.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08614.t1 | Q8LEJ6 | 49.0 | 153 | 77 | 1 | 80 | 231 | 43 | 195 | 2.1e-35 | 151.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08614.t1 | G7JPF4 | 94.5 | 291 | 16 | 0 | 1 | 291 | 1 | 291 | 1.8e-96 | 362.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056470 | MS.gene08614 | 0.827774 | 1.30E-54 | -1.69E-46 |
| MS.gene058848 | MS.gene08614 | 0.843763 | 1.15E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08614.t1 | MTR_4g059790 | 96.907 | 291 | 9 | 0 | 1 | 291 | 1 | 291 | 0.0 | 557 |
| MS.gene08614.t1 | MTR_4g059840 | 91.696 | 289 | 24 | 0 | 1 | 289 | 1 | 289 | 1.56e-180 | 499 |
| MS.gene08614.t1 | MTR_4g053380 | 79.181 | 293 | 57 | 3 | 1 | 289 | 2 | 294 | 1.13e-145 | 411 |
| MS.gene08614.t1 | MTR_2g093970 | 57.951 | 283 | 106 | 6 | 9 | 283 | 8 | 285 | 2.54e-95 | 283 |
| MS.gene08614.t1 | MTR_2g017970 | 55.909 | 220 | 87 | 3 | 73 | 291 | 68 | 278 | 1.74e-74 | 229 |
| MS.gene08614.t1 | MTR_8g087450 | 56.667 | 210 | 78 | 3 | 22 | 220 | 17 | 224 | 3.64e-74 | 229 |
| MS.gene08614.t1 | MTR_2g093980 | 46.233 | 292 | 140 | 6 | 4 | 289 | 2 | 282 | 1.65e-72 | 224 |
| MS.gene08614.t1 | MTR_2g017960 | 54.545 | 264 | 109 | 4 | 5 | 268 | 2 | 254 | 3.23e-72 | 224 |
| MS.gene08614.t1 | MTR_2g017950 | 45.098 | 306 | 127 | 11 | 1 | 283 | 1 | 288 | 2.76e-69 | 217 |
| MS.gene08614.t1 | MTR_8g087460 | 52.245 | 245 | 88 | 9 | 2 | 220 | 1 | 242 | 1.69e-68 | 215 |
| MS.gene08614.t1 | MTR_8g087470 | 52.479 | 242 | 89 | 8 | 2 | 220 | 4 | 242 | 2.61e-67 | 212 |
| MS.gene08614.t1 | MTR_4g059780 | 55.838 | 197 | 78 | 3 | 30 | 222 | 48 | 239 | 1.43e-66 | 210 |
| MS.gene08614.t1 | MTR_4g059720 | 50.698 | 215 | 73 | 5 | 7 | 221 | 8 | 189 | 5.76e-59 | 189 |
| MS.gene08614.t1 | MTR_2g093990 | 55.034 | 149 | 66 | 1 | 73 | 221 | 41 | 188 | 1.65e-50 | 167 |
| MS.gene08614.t1 | MTR_7g101080 | 44.937 | 158 | 85 | 2 | 65 | 221 | 32 | 188 | 3.28e-39 | 138 |
| MS.gene08614.t1 | MTR_2g090765 | 37.778 | 225 | 122 | 3 | 66 | 283 | 31 | 244 | 5.10e-31 | 116 |
| MS.gene08614.t1 | MTR_7g075453 | 33.516 | 182 | 114 | 3 | 66 | 247 | 177 | 351 | 3.36e-19 | 87.4 |
| MS.gene08614.t1 | MTR_5g098060 | 29.885 | 174 | 114 | 4 | 72 | 241 | 47 | 216 | 1.77e-16 | 77.8 |
| MS.gene08614.t1 | MTR_5g098420 | 30.270 | 185 | 114 | 7 | 52 | 235 | 179 | 349 | 2.01e-12 | 67.4 |
| MS.gene08614.t1 | MTR_2g437700 | 30.519 | 154 | 100 | 4 | 72 | 221 | 194 | 344 | 4.22e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08614.t1 | AT5G03170 | 47.904 | 167 | 86 | 1 | 66 | 231 | 29 | 195 | 3.43e-48 | 161 |
| MS.gene08614.t1 | AT5G60490 | 54.000 | 150 | 67 | 2 | 73 | 221 | 39 | 187 | 9.72e-48 | 160 |
| MS.gene08614.t1 | AT2G20520 | 36.134 | 238 | 130 | 7 | 52 | 286 | 19 | 237 | 7.52e-29 | 110 |
| MS.gene08614.t1 | AT5G44130 | 37.313 | 201 | 112 | 7 | 72 | 268 | 35 | 225 | 1.74e-28 | 110 |
| MS.gene08614.t1 | AT1G03870 | 33.333 | 213 | 131 | 5 | 72 | 283 | 38 | 240 | 4.04e-26 | 103 |
| MS.gene08614.t1 | AT3G60900 | 29.670 | 182 | 123 | 2 | 66 | 247 | 183 | 359 | 1.26e-16 | 79.7 |
| MS.gene08614.t1 | AT3G46550 | 30.857 | 175 | 112 | 6 | 58 | 227 | 193 | 363 | 1.57e-14 | 73.6 |
| MS.gene08614.t1 | AT2G04780 | 30.263 | 152 | 100 | 3 | 72 | 221 | 45 | 192 | 5.42e-13 | 67.8 |
| MS.gene08614.t1 | AT2G04780 | 30.263 | 152 | 100 | 3 | 72 | 221 | 45 | 192 | 5.42e-13 | 67.8 |
Find 75 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATTCAGTTCCACCTTTC+CGG | 0.262448 | 4.1:+38966418 | None:intergenic |
| GGAGCTGCAGCTGGGGTGGC+TGG | 0.271900 | 4.1:+38966803 | None:intergenic |
| TCAACAGTGCCTGCGGTGTC+AGG | 0.281291 | 4.1:+38966734 | None:intergenic |
| GCTGTATCGGTTGAAGGTTC+TGG | 0.299723 | 4.1:+38966227 | None:intergenic |
| ATCTGATGATGTATCTTTAT+CGG | 0.306273 | 4.1:+38966190 | None:intergenic |
| ACCGGGGAAGGCACCATCTT+TGG | 0.311761 | 4.1:-38966252 | MS.gene08614:CDS |
| GCAGCTGGGGTGGCTGGAGC+TGG | 0.322678 | 4.1:+38966809 | None:intergenic |
| AATGAAGGTACCAACGGTTT+AGG | 0.351100 | 4.1:+38966782 | None:intergenic |
| CGTCTTGCTATTTACAAAGT+TGG | 0.358413 | 4.1:-38966317 | MS.gene08614:CDS |
| ACATTCAGTTCCACCTTTCC+GGG | 0.360231 | 4.1:+38966419 | None:intergenic |
| TGTATTCCTTTGCCTTTCTC+AGG | 0.368059 | 4.1:+38966699 | None:intergenic |
| GCCTTTGCTGTATCGGTTGA+AGG | 0.385363 | 4.1:+38966221 | None:intergenic |
| AACCCTGTGAGAACACTTGC+TGG | 0.387148 | 4.1:-38966449 | MS.gene08614:CDS |
| TGGCAAAGTGCTTCTTCCTA+TGG | 0.388422 | 4.1:-38966297 | MS.gene08614:CDS |
| GATGTATCTTTATCGGGTTT+AGG | 0.388759 | 4.1:+38966197 | None:intergenic |
| ACTTGGACTTGTATTAGCTT+TGG | 0.408599 | 4.1:-38966096 | MS.gene08614:CDS |
| GGCTCTATCAAGGTTGTGTA+TGG | 0.423819 | 4.1:-38966131 | MS.gene08614:CDS |
| TCTGATGATGTATCTTTATC+GGG | 0.424899 | 4.1:+38966191 | None:intergenic |
| TTTAGGTGCCTTTGCTGTAT+CGG | 0.426276 | 4.1:+38966214 | None:intergenic |
| AACGGTTTAGGAGCTGCAGC+TGG | 0.428497 | 4.1:+38966794 | None:intergenic |
| GCTGGTAGTGTAGGTTGTAT+AGG | 0.438970 | 4.1:+38966827 | None:intergenic |
| TGGACTTGTATTAGCTTTGG+CGG | 0.446056 | 4.1:-38966093 | MS.gene08614:CDS |
| CCTGAAAAGGCGCTGTCATC+CGG | 0.449059 | 4.1:+38966581 | None:intergenic |
| GTGGCTGGAGCTGGTAGTGT+AGG | 0.452207 | 4.1:+38966818 | None:intergenic |
| CCAACTCAATTCGCAGCTAC+TGG | 0.457459 | 4.1:-38966636 | MS.gene08614:CDS |
| AATCCAACTGAAAACAAGTC+TGG | 0.463708 | 4.1:-38966152 | MS.gene08614:CDS |
| TCCTGCTTTGAGTCCTGAAA+AGG | 0.493642 | 4.1:+38966568 | None:intergenic |
| GCCAAAGATGGTGCCTTCCC+CGG | 0.494928 | 4.1:+38966251 | None:intergenic |
| TGTTTCTAAGGCACCGGGGA+AGG | 0.505049 | 4.1:-38966264 | MS.gene08614:CDS |
| CAACAGTGCCTGCGGTGTCA+GGG | 0.508035 | 4.1:+38966735 | None:intergenic |
| ACGGTTTAGGAGCTGCAGCT+GGG | 0.517055 | 4.1:+38966795 | None:intergenic |
| GCTCCAGCAAGTGTTCTCAC+AGG | 0.519482 | 4.1:+38966446 | None:intergenic |
| AAACAAGTCTGGCTCTATCA+AGG | 0.521993 | 4.1:-38966141 | MS.gene08614:CDS |
| GGAAGTGTGAACATATCGAC+AGG | 0.523735 | 4.1:-38966383 | MS.gene08614:CDS |
| TTCCTCAACTCTCTTTCCGA+TGG | 0.528631 | 4.1:-38966545 | MS.gene08614:CDS |
| CTAGGTGACTCTGGTAATGA+AGG | 0.531327 | 4.1:+38966767 | None:intergenic |
| AGTGCCTGCGGTGTCAGGGG+TGG | 0.531927 | 4.1:+38966739 | None:intergenic |
| GAAGTGAACACAACAATCAA+TGG | 0.536466 | 4.1:-38966359 | MS.gene08614:CDS |
| GAAGGTTCTGGTGCCAAAGA+TGG | 0.536850 | 4.1:+38966239 | None:intergenic |
| CCAGTAGCTGCGAATTGAGT+TGG | 0.540214 | 4.1:+38966636 | None:intergenic |
| TTTAGGAGCTGCAGCTGGGG+TGG | 0.545518 | 4.1:+38966799 | None:intergenic |
| GTGGAATCACTAGGTGACTC+TGG | 0.548332 | 4.1:+38966758 | None:intergenic |
| CGGTTTAGGAGCTGCAGCTG+GGG | 0.553760 | 4.1:+38966796 | None:intergenic |
| GAAACAGAAAAGAAATCCAT+AGG | 0.554500 | 4.1:+38966281 | None:intergenic |
| AGCAAGTGTTCTCACAGGGT+TGG | 0.556533 | 4.1:+38966451 | None:intergenic |
| GGTTGTATAGGAGCAGTAGC+AGG | 0.558738 | 4.1:+38966839 | None:intergenic |
| GAACTGAATGTTGTGAGTTA+CGG | 0.564207 | 4.1:-38966407 | MS.gene08614:CDS |
| AGCTGCAGCTCCTAAACCGT+TGG | 0.567370 | 4.1:-38966792 | MS.gene08614:CDS |
| TGGATTAACAATACTTGCAC+CGG | 0.570767 | 4.1:-38966600 | MS.gene08614:CDS |
| CATCGTCGGAATCCTGAGAA+AGG | 0.571041 | 4.1:-38966711 | MS.gene08614:CDS |
| CTCCAGCAAGTGTTCTCACA+GGG | 0.574947 | 4.1:+38966447 | None:intergenic |
| AACTAGCAGTGCAAGTGAGA+AGG | 0.575205 | 4.1:+38966904 | None:intergenic |
| GATTCCACCCCTGACACCGC+AGG | 0.578533 | 4.1:-38966743 | MS.gene08614:CDS |
| TGCTGGAGCTAAACCCGGAA+AGG | 0.580904 | 4.1:-38966432 | MS.gene08614:CDS |
| TACATCATCAGATTCGTCGC+AGG | 0.582113 | 4.1:-38966180 | MS.gene08614:CDS |
| GTGTCAGGGGTGGAATCACT+AGG | 0.582776 | 4.1:+38966749 | None:intergenic |
| TCAAGGTTGTGTATGGAAAG+TGG | 0.583724 | 4.1:-38966124 | MS.gene08614:CDS |
| TATGGAAAGTGGATGTCACT+TGG | 0.586667 | 4.1:-38966113 | MS.gene08614:CDS |
| AACAGTGCCTGCGGTGTCAG+GGG | 0.587591 | 4.1:+38966736 | None:intergenic |
| ACACTTGCTGGAGCTAAACC+CGG | 0.593390 | 4.1:-38966437 | MS.gene08614:CDS |
| CGGAATCCTGAGAAAGGCAA+AGG | 0.611142 | 4.1:-38966705 | MS.gene08614:CDS |
| ACCTTCAACCGATACAGCAA+AGG | 0.611839 | 4.1:-38966222 | MS.gene08614:CDS |
| GACGATGTCAACAGTGCCTG+CGG | 0.612466 | 4.1:+38966727 | None:intergenic |
| CAACTCGAGTTTCTGTCCAT+CGG | 0.627311 | 4.1:+38966529 | None:intergenic |
| GCAGGCACTGTTGACATCGT+CGG | 0.636937 | 4.1:-38966725 | MS.gene08614:CDS |
| TGGAGCTAAACCCGGAAAGG+TGG | 0.639885 | 4.1:-38966429 | MS.gene08614:CDS |
| CTGAATGTTGTGAGTTACGG+AGG | 0.642257 | 4.1:-38966404 | MS.gene08614:CDS |
| ATACATAGTCTGAAATAACA+TGG | 0.642288 | 4.1:+38966498 | None:intergenic |
| TCTGGTAATGAAGGTACCAA+CGG | 0.649649 | 4.1:+38966776 | None:intergenic |
| GTCCATCGGAAAGAGAGTTG+AGG | 0.651728 | 4.1:+38966543 | None:intergenic |
| TAGTTGAGATAAACTAGTGG+TGG | 0.696029 | 4.1:+38966865 | None:intergenic |
| GAAGTGTGAACATATCGACA+GGG | 0.704878 | 4.1:-38966382 | MS.gene08614:CDS |
| TGATAGTTGAGATAAACTAG+TGG | 0.724529 | 4.1:+38966862 | None:intergenic |
| AAGTGTGAACATATCGACAG+GGG | 0.734548 | 4.1:-38966381 | MS.gene08614:CDS |
| TTTCTGTTTCTAAGGCACCG+GGG | 0.799733 | 4.1:-38966268 | MS.gene08614:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACATAGTCTGAAATAACA+TGG | + | chr4.1:38966510-38966529 | None:intergenic | 25.0% |
| !! | ATCTGATGATGTATCTTTAT+CGG | + | chr4.1:38966818-38966837 | None:intergenic | 25.0% |
| GAAACAGAAAAGAAATCCAT+AGG | + | chr4.1:38966727-38966746 | None:intergenic | 30.0% | |
| TGATAGTTGAGATAAACTAG+TGG | + | chr4.1:38966146-38966165 | None:intergenic | 30.0% | |
| ! | TCTGATGATGTATCTTTATC+GGG | + | chr4.1:38966817-38966836 | None:intergenic | 30.0% |
| !!! | GGATTTCTTTTCTGTTTCTA+AGG | - | chr4.1:38966729-38966748 | MS.gene08614:CDS | 30.0% |
| AATCCAACTGAAAACAAGTC+TGG | - | chr4.1:38966853-38966872 | MS.gene08614:CDS | 35.0% | |
| GAACTGAATGTTGTGAGTTA+CGG | - | chr4.1:38966598-38966617 | MS.gene08614:CDS | 35.0% | |
| GAAGTGAACACAACAATCAA+TGG | - | chr4.1:38966646-38966665 | MS.gene08614:CDS | 35.0% | |
| GATGTATCTTTATCGGGTTT+AGG | + | chr4.1:38966811-38966830 | None:intergenic | 35.0% | |
| TAGTTGAGATAAACTAGTGG+TGG | + | chr4.1:38966143-38966162 | None:intergenic | 35.0% | |
| TGGATTAACAATACTTGCAC+CGG | - | chr4.1:38966405-38966424 | MS.gene08614:CDS | 35.0% | |
| ! | ACTTGGACTTGTATTAGCTT+TGG | - | chr4.1:38966909-38966928 | MS.gene08614:CDS | 35.0% |
| !! | CGTCTTGCTATTTACAAAGT+TGG | - | chr4.1:38966688-38966707 | MS.gene08614:CDS | 35.0% |
| AACATTCAGTTCCACCTTTC+CGG | + | chr4.1:38966590-38966609 | None:intergenic | 40.0% | |
| AAGTGTGAACATATCGACAG+GGG | - | chr4.1:38966624-38966643 | MS.gene08614:CDS | 40.0% | |
| GAAGTGTGAACATATCGACA+GGG | - | chr4.1:38966623-38966642 | MS.gene08614:CDS | 40.0% | |
| TATGGAAAGTGGATGTCACT+TGG | - | chr4.1:38966892-38966911 | MS.gene08614:CDS | 40.0% | |
| TCAAGGTTGTGTATGGAAAG+TGG | - | chr4.1:38966881-38966900 | MS.gene08614:CDS | 40.0% | |
| TGTATTCCTTTGCCTTTCTC+AGG | + | chr4.1:38966309-38966328 | None:intergenic | 40.0% | |
| ! | TTTAGGTGCCTTTGCTGTAT+CGG | + | chr4.1:38966794-38966813 | None:intergenic | 40.0% |
| !! | AAACAAGTCTGGCTCTATCA+AGG | - | chr4.1:38966864-38966883 | MS.gene08614:CDS | 40.0% |
| !! | AATGAAGGTACCAACGGTTT+AGG | + | chr4.1:38966226-38966245 | None:intergenic | 40.0% |
| !! | TCTGGTAATGAAGGTACCAA+CGG | + | chr4.1:38966232-38966251 | None:intergenic | 40.0% |
| !! | TGGACTTGTATTAGCTTTGG+CGG | - | chr4.1:38966912-38966931 | MS.gene08614:CDS | 40.0% |
| !!! | CTTTTCTGTTTCTAAGGCAC+CGG | - | chr4.1:38966735-38966754 | MS.gene08614:CDS | 40.0% |
| !!! | TTTTCTGTTTCTAAGGCACC+GGG | - | chr4.1:38966736-38966755 | MS.gene08614:CDS | 40.0% |
| AACTAGCAGTGCAAGTGAGA+AGG | + | chr4.1:38966104-38966123 | None:intergenic | 45.0% | |
| ACATTCAGTTCCACCTTTCC+GGG | + | chr4.1:38966589-38966608 | None:intergenic | 45.0% | |
| ACCTTCAACCGATACAGCAA+AGG | - | chr4.1:38966783-38966802 | MS.gene08614:CDS | 45.0% | |
| CAACTCGAGTTTCTGTCCAT+CGG | + | chr4.1:38966479-38966498 | None:intergenic | 45.0% | |
| CTGAATGTTGTGAGTTACGG+AGG | - | chr4.1:38966601-38966620 | MS.gene08614:CDS | 45.0% | |
| GGCTCTATCAAGGTTGTGTA+TGG | - | chr4.1:38966874-38966893 | MS.gene08614:CDS | 45.0% | |
| TACATCATCAGATTCGTCGC+AGG | - | chr4.1:38966825-38966844 | MS.gene08614:CDS | 45.0% | |
| TTCCTCAACTCTCTTTCCGA+TGG | - | chr4.1:38966460-38966479 | MS.gene08614:CDS | 45.0% | |
| ! | CAGCTACTGGCTACAAAAAC+AGG | - | chr4.1:38966382-38966401 | MS.gene08614:CDS | 45.0% |
| ! | CTACTGGCTACAAAAACAGG+TGG | - | chr4.1:38966385-38966404 | MS.gene08614:CDS | 45.0% |
| ! | CTAGGTGACTCTGGTAATGA+AGG | + | chr4.1:38966241-38966260 | None:intergenic | 45.0% |
| ! | GCTGGTAGTGTAGGTTGTAT+AGG | + | chr4.1:38966181-38966200 | None:intergenic | 45.0% |
| ! | GGAAGTGTGAACATATCGAC+AGG | - | chr4.1:38966622-38966641 | MS.gene08614:CDS | 45.0% |
| ! | TCCTGCTTTGAGTCCTGAAA+AGG | + | chr4.1:38966440-38966459 | None:intergenic | 45.0% |
| ! | TGGCAAAGTGCTTCTTCCTA+TGG | - | chr4.1:38966708-38966727 | MS.gene08614:CDS | 45.0% |
| !! | GAGCCAGACTTGTTTTCAGT+TGG | + | chr4.1:38966859-38966878 | None:intergenic | 45.0% |
| !! | TTTCTGTTTCTAAGGCACCG+GGG | - | chr4.1:38966737-38966756 | MS.gene08614:CDS | 45.0% |
| AACCCTGTGAGAACACTTGC+TGG | - | chr4.1:38966556-38966575 | MS.gene08614:CDS | 50.0% | |
| AGCAAGTGTTCTCACAGGGT+TGG | + | chr4.1:38966557-38966576 | None:intergenic | 50.0% | |
| CATCGTCGGAATCCTGAGAA+AGG | - | chr4.1:38966294-38966313 | MS.gene08614:CDS | 50.0% | |
| CCAACTCAATTCGCAGCTAC+TGG | - | chr4.1:38966369-38966388 | MS.gene08614:CDS | 50.0% | |
| CCAGTAGCTGCGAATTGAGT+TGG | + | chr4.1:38966372-38966391 | None:intergenic | 50.0% | |
| CGGAATCCTGAGAAAGGCAA+AGG | - | chr4.1:38966300-38966319 | MS.gene08614:CDS | 50.0% | |
| CTCCAGCAAGTGTTCTCACA+GGG | + | chr4.1:38966561-38966580 | None:intergenic | 50.0% | |
| GGTTGTATAGGAGCAGTAGC+AGG | + | chr4.1:38966169-38966188 | None:intergenic | 50.0% | |
| GTCCATCGGAAAGAGAGTTG+AGG | + | chr4.1:38966465-38966484 | None:intergenic | 50.0% | |
| GTGGAATCACTAGGTGACTC+TGG | + | chr4.1:38966250-38966269 | None:intergenic | 50.0% | |
| ! | ACACTTGCTGGAGCTAAACC+CGG | - | chr4.1:38966568-38966587 | MS.gene08614:CDS | 50.0% |
| ! | GAAGGTTCTGGTGCCAAAGA+TGG | + | chr4.1:38966769-38966788 | None:intergenic | 50.0% |
| !! | GCCTTTGCTGTATCGGTTGA+AGG | + | chr4.1:38966787-38966806 | None:intergenic | 50.0% |
| !! | GCCTTTTCAGGACTCAAAGC+AGG | - | chr4.1:38966436-38966455 | MS.gene08614:CDS | 50.0% |
| !! | GCTGTATCGGTTGAAGGTTC+TGG | + | chr4.1:38966781-38966800 | None:intergenic | 50.0% |
| AACGGTTTAGGAGCTGCAGC+TGG | + | chr4.1:38966214-38966233 | None:intergenic | 55.0% | |
| ACGGTTTAGGAGCTGCAGCT+GGG | + | chr4.1:38966213-38966232 | None:intergenic | 55.0% | |
| AGCTGCAGCTCCTAAACCGT+TGG | - | chr4.1:38966213-38966232 | MS.gene08614:CDS | 55.0% | |
| GACGATGTCAACAGTGCCTG+CGG | + | chr4.1:38966281-38966300 | None:intergenic | 55.0% | |
| GCTCCAGCAAGTGTTCTCAC+AGG | + | chr4.1:38966562-38966581 | None:intergenic | 55.0% | |
| GTGTCAGGGGTGGAATCACT+AGG | + | chr4.1:38966259-38966278 | None:intergenic | 55.0% | |
| TGCTGGAGCTAAACCCGGAA+AGG | - | chr4.1:38966573-38966592 | MS.gene08614:CDS | 55.0% | |
| TGGAGCTAAACCCGGAAAGG+TGG | - | chr4.1:38966576-38966595 | MS.gene08614:CDS | 55.0% | |
| ! | GCAGGCACTGTTGACATCGT+CGG | - | chr4.1:38966280-38966299 | MS.gene08614:CDS | 55.0% |
| !! | CCTGAAAAGGCGCTGTCATC+CGG | + | chr4.1:38966427-38966446 | None:intergenic | 55.0% |
| !! | TGTTTCTAAGGCACCGGGGA+AGG | - | chr4.1:38966741-38966760 | MS.gene08614:CDS | 55.0% |
| CGGTTTAGGAGCTGCAGCTG+GGG | + | chr4.1:38966212-38966231 | None:intergenic | 60.0% | |
| GCCAAAGATGGTGCCTTCCC+CGG | + | chr4.1:38966757-38966776 | None:intergenic | 60.0% | |
| TCAACAGTGCCTGCGGTGTC+AGG | + | chr4.1:38966274-38966293 | None:intergenic | 60.0% | |
| TTTAGGAGCTGCAGCTGGGG+TGG | + | chr4.1:38966209-38966228 | None:intergenic | 60.0% | |
| ! | AACAGTGCCTGCGGTGTCAG+GGG | + | chr4.1:38966272-38966291 | None:intergenic | 60.0% |
| ! | CAACAGTGCCTGCGGTGTCA+GGG | + | chr4.1:38966273-38966292 | None:intergenic | 60.0% |
| ! | CCGGATGACAGCGCCTTTTC+AGG | - | chr4.1:38966424-38966443 | MS.gene08614:CDS | 60.0% |
| ! | GTGGCTGGAGCTGGTAGTGT+AGG | + | chr4.1:38966190-38966209 | None:intergenic | 60.0% |
| !! | ACCGGGGAAGGCACCATCTT+TGG | - | chr4.1:38966753-38966772 | MS.gene08614:CDS | 60.0% |
| GATTCCACCCCTGACACCGC+AGG | - | chr4.1:38966262-38966281 | MS.gene08614:CDS | 65.0% | |
| ! | AGTGCCTGCGGTGTCAGGGG+TGG | + | chr4.1:38966269-38966288 | None:intergenic | 70.0% |
| GCAGCTGGGGTGGCTGGAGC+TGG | + | chr4.1:38966199-38966218 | None:intergenic | 75.0% | |
| GGAGCTGCAGCTGGGGTGGC+TGG | + | chr4.1:38966205-38966224 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 38966076 | 38966951 | 38966076 | ID=MS.gene08614 |
| chr4.1 | mRNA | 38966076 | 38966951 | 38966076 | ID=MS.gene08614.t1;Parent=MS.gene08614 |
| chr4.1 | exon | 38966076 | 38966951 | 38966076 | ID=MS.gene08614.t1.exon1;Parent=MS.gene08614.t1 |
| chr4.1 | CDS | 38966076 | 38966951 | 38966076 | ID=cds.MS.gene08614.t1;Parent=MS.gene08614.t1 |
| Gene Sequence |
| Protein sequence |
