Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08709.t1 | KEH30062.1 | 96.7 | 838 | 28 | 0 | 17 | 854 | 9 | 846 | 0.00E+00 | 1630.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08709.t1 | Q680Q4 | 61.1 | 835 | 308 | 12 | 17 | 847 | 9 | 830 | 1.4e-294 | 1013.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08709.t1 | A0A072UK34 | 96.7 | 838 | 28 | 0 | 17 | 854 | 9 | 846 | 0.0e+00 | 1630.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene08709.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057682 | MS.gene08709 | 0.839826 | 1.26E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08709.t1 | MTR_4g060510 | 98.687 | 838 | 11 | 0 | 17 | 854 | 9 | 846 | 0.0 | 1707 |
| MS.gene08709.t1 | MTR_4g060510 | 98.436 | 831 | 13 | 0 | 17 | 847 | 9 | 839 | 0.0 | 1690 |
| MS.gene08709.t1 | MTR_4g060510 | 98.436 | 831 | 13 | 0 | 17 | 847 | 9 | 839 | 0.0 | 1689 |
| MS.gene08709.t1 | MTR_2g093730 | 71.961 | 831 | 221 | 6 | 17 | 844 | 10 | 831 | 0.0 | 1188 |
| MS.gene08709.t1 | MTR_5g009920 | 30.556 | 108 | 72 | 1 | 359 | 466 | 302 | 406 | 5.05e-14 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08709.t1 | AT5G60410 | 62.156 | 835 | 299 | 12 | 17 | 847 | 9 | 830 | 0.0 | 1046 |
| MS.gene08709.t1 | AT5G60410 | 62.036 | 835 | 300 | 12 | 17 | 847 | 9 | 830 | 0.0 | 1045 |
| MS.gene08709.t1 | AT5G60410 | 62.036 | 835 | 300 | 12 | 17 | 847 | 9 | 830 | 0.0 | 1045 |
| MS.gene08709.t1 | AT5G60410 | 62.036 | 835 | 300 | 12 | 17 | 847 | 9 | 830 | 0.0 | 1045 |
| MS.gene08709.t1 | AT5G60410 | 62.036 | 835 | 300 | 12 | 17 | 847 | 9 | 830 | 0.0 | 1045 |
| MS.gene08709.t1 | AT5G60410 | 62.036 | 835 | 300 | 12 | 17 | 847 | 9 | 830 | 0.0 | 1044 |
Find 234 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCTAATGAAGATGATTT+TGG | 0.169950 | 4.4:+44489637 | MS.gene08709:CDS |
| GAAAGTGAACGTCTGGATTT+AGG | 0.177524 | 4.4:+44489010 | MS.gene08709:CDS |
| TTGTCTCAGTTTCCAGAATA+TGG | 0.204078 | 4.4:+44484822 | MS.gene08709:intron |
| AACCATCTGCAATATCATTT+TGG | 0.221232 | 4.4:-44489537 | None:intergenic |
| TTTCCCAACAGCATTCTTCT+TGG | 0.230199 | 4.4:-44484846 | None:intergenic |
| CTGGTTGTGGCCAACTTTAC+AGG | 0.240074 | 4.4:-44486368 | None:intergenic |
| GCAAATACTTTGGCTGATTC+TGG | 0.265030 | 4.4:+44490132 | MS.gene08709:CDS |
| CGTCTGGATTTAGGGATTCT+TGG | 0.266687 | 4.4:+44489019 | MS.gene08709:CDS |
| TTTCAATCGCATCACTTCTA+TGG | 0.279502 | 4.4:+44488837 | MS.gene08709:CDS |
| CCAGATCCCAAAGCAGTTTC+GGG | 0.280923 | 4.4:-44489811 | None:intergenic |
| ACCTTGCTCATCTGAGAGTA+TGG | 0.290977 | 4.4:-44484217 | None:intergenic |
| GCCAGATCCCAAAGCAGTTT+CGG | 0.293735 | 4.4:-44489812 | None:intergenic |
| GAAAAGAAATATAAGTAAAA+TGG | 0.303373 | 4.4:+44481987 | MS.gene08709:CDS |
| ACTCCTTTGGAATTAAGTTT+AGG | 0.304656 | 4.4:-44488340 | None:intergenic |
| GGTGATGCTTCCACTCAAAA+TGG | 0.305594 | 4.4:+44490069 | MS.gene08709:CDS |
| ATTCTTCTTGGCCCATATTC+TGG | 0.317429 | 4.4:-44484834 | None:intergenic |
| GAAGTGATGCGATTGAAATA+AGG | 0.318290 | 4.4:-44488832 | None:intergenic |
| GAAAGAGCAGGTGGCAAAAT+TGG | 0.320071 | 4.4:+44484865 | MS.gene08709:CDS |
| CTGGTTTAAAACTTGGCATT+AGG | 0.321743 | 4.4:+44489149 | MS.gene08709:CDS |
| GGAGGAATCGCAATGGGAAT+TGG | 0.324383 | 4.4:+44489170 | MS.gene08709:CDS |
| ACTCAGGAAAATGCAGATAT+CGG | 0.327194 | 4.4:+44485129 | MS.gene08709:intron |
| TATACAGACCTAGCAGTTAA+TGG | 0.329641 | 4.4:+44487110 | MS.gene08709:CDS |
| CCCGAAACTGCTTTGGGATC+TGG | 0.333745 | 4.4:+44489811 | MS.gene08709:CDS |
| AAGAACATTTATGAATTAGA+AGG | 0.340056 | 4.4:-44490171 | None:intergenic |
| TGCTGATAGCGACAGTGATT+TGG | 0.342121 | 4.4:+44488436 | MS.gene08709:CDS |
| CACGCGTCTGTCGTTGTGTT+GGG | 0.342273 | 4.4:+44488393 | MS.gene08709:CDS |
| ATTCCAAAATCATCTTCATT+AGG | 0.342360 | 4.4:-44489640 | None:intergenic |
| CTCGGTGGAAGTTCATGCTT+GGG | 0.346082 | 4.4:+44489610 | MS.gene08709:CDS |
| GTCATTGCCTTCTGCATCTC+AGG | 0.353133 | 4.4:+44489675 | MS.gene08709:CDS |
| ATTGGCTCCCGAAACTGCTT+TGG | 0.354081 | 4.4:+44489804 | MS.gene08709:CDS |
| TGAACGACAAGGTTCCATTC+AGG | 0.356491 | 4.4:+44487072 | MS.gene08709:CDS |
| GACAACCCATTGGCATTTGC+TGG | 0.356540 | 4.4:+44489895 | MS.gene08709:CDS |
| ATCACCATCCCGACCACTTT+CGG | 0.356985 | 4.4:-44489296 | None:intergenic |
| AAAGTGAACGTCTGGATTTA+GGG | 0.357301 | 4.4:+44489011 | MS.gene08709:CDS |
| AGTTCACAATAAAATTTATC+AGG | 0.361374 | 4.4:-44485601 | None:intergenic |
| GGCCAATGGCATCTTCCTAA+TGG | 0.367292 | 4.4:+44489040 | MS.gene08709:CDS |
| AGTGTTAACCAGGGTGGTGG+TGG | 0.369509 | 4.4:+44489325 | MS.gene08709:CDS |
| TTGGCTCCCGAAACTGCTTT+GGG | 0.370189 | 4.4:+44489805 | MS.gene08709:CDS |
| AGTGATGAGGTGCAATTAAT+AGG | 0.378729 | 4.4:-44489769 | None:intergenic |
| CAGTATAAGCCTTCGTTGTC+CGG | 0.381422 | 4.4:+44488478 | MS.gene08709:CDS |
| CATTGTCTCTGGATGGGACT+TGG | 0.386225 | 4.4:-44490107 | None:intergenic |
| ATGCCTTCCATAGGTTTCTC+TGG | 0.386479 | 4.4:-44485568 | None:intergenic |
| TGTGGAAGTACATTGGAAAC+AGG | 0.389365 | 4.4:+44485274 | MS.gene08709:CDS |
| AGTATTTGCGCCATTGTCTC+TGG | 0.389636 | 4.4:-44490118 | None:intergenic |
| GACGACTCAGCTGGTCTTGT+GGG | 0.390350 | 4.4:-44489946 | None:intergenic |
| CTTACTCTCGGAGGTGGTGC+TGG | 0.391540 | 4.4:+44490036 | MS.gene08709:CDS |
| GTTCTCTCCACGCACTGCAC+TGG | 0.391843 | 4.4:-44486895 | None:intergenic |
| CAGCACCACCTCCGAGAGTA+AGG | 0.392682 | 4.4:-44490035 | None:intergenic |
| AACACTGAAGCAAGTAAAAC+AGG | 0.397029 | 4.4:+44489105 | MS.gene08709:CDS |
| GGTCTATTAGTTGTTCGAAT+AGG | 0.398032 | 4.4:-44487285 | None:intergenic |
| ATGGTGTTTCCACTGAAGAT+TGG | 0.399962 | 4.4:+44490007 | MS.gene08709:CDS |
| CAATAAAATTTATCAGGAAC+TGG | 0.400321 | 4.4:-44485595 | None:intergenic |
| AATGCAAGGTTTGAATCTTC+CGG | 0.401374 | 4.4:-44488611 | None:intergenic |
| TGTCTCAGTTTCCAGAATAT+GGG | 0.403486 | 4.4:+44484823 | MS.gene08709:intron |
| CTGCATCAGAACCGAACAAT+TGG | 0.403934 | 4.4:-44489711 | None:intergenic |
| AGATTCTGATCTTCAGTGTA+TGG | 0.405129 | 4.4:-44489589 | None:intergenic |
| GAGACAACAAACACCTCTTC+TGG | 0.405142 | 4.4:+44489208 | MS.gene08709:CDS |
| TGATGGCTCTTGGCGTGTTA+AGG | 0.415872 | 4.4:+44488979 | MS.gene08709:CDS |
| TCAGTTAGGACTTTCAAAAC+AGG | 0.417332 | 4.4:+44483957 | MS.gene08709:CDS |
| GAAGAGGTGTTTGTTGTCTC+GGG | 0.417393 | 4.4:-44489205 | None:intergenic |
| CAGAAGGCGCAGTTTGCAAC+AGG | 0.417817 | 4.4:+44487562 | MS.gene08709:CDS |
| AGAAGAGGTGTTTGTTGTCT+CGG | 0.418486 | 4.4:-44489206 | None:intergenic |
| AAGTGATGCGATTGAAATAA+GGG | 0.420028 | 4.4:-44488831 | None:intergenic |
| ATTGGAATAACAACTTGTTC+AGG | 0.423238 | 4.4:-44489259 | None:intergenic |
| TGAAGAAGACAATGACATAT+TGG | 0.426237 | 4.4:+44489486 | MS.gene08709:CDS |
| TCCCTTTGTACTTCTACTGC+TGG | 0.427026 | 4.4:+44489064 | MS.gene08709:CDS |
| TGGTGGTTGTTATTTGCAAT+TGG | 0.428837 | 4.4:-44489517 | None:intergenic |
| GGCTCACCGTCAGACTCCTT+TGG | 0.429043 | 4.4:-44488353 | None:intergenic |
| GGTCCAGGATTCCAATTGTT+CGG | 0.430991 | 4.4:+44489700 | MS.gene08709:CDS |
| TCGGAGCCACTGCTGCTCAT+TGG | 0.433629 | 4.4:-44489277 | None:intergenic |
| TTCTCTCCACGCACTGCACT+GGG | 0.434383 | 4.4:-44486894 | None:intergenic |
| GATCAAGCAAATGTCTCTAA+TGG | 0.441265 | 4.4:+44489988 | MS.gene08709:CDS |
| AAGGATGTGCTGACTCAGTT+AGG | 0.444292 | 4.4:+44483943 | MS.gene08709:CDS |
| TCCTTTGTTACCTGTAAAGT+TGG | 0.445895 | 4.4:+44486358 | MS.gene08709:CDS |
| GAGGAATCGCAATGGGAATT+GGG | 0.446679 | 4.4:+44489171 | MS.gene08709:CDS |
| GGTTCAAGAATGAAGATTGC+CGG | 0.447230 | 4.4:+44488592 | MS.gene08709:CDS |
| GCGAGCATCACATACTGTTA+AGG | 0.451776 | 4.4:-44487513 | None:intergenic |
| CTCTTACAAGATTCCTCTGC+TGG | 0.453644 | 4.4:+44489838 | MS.gene08709:CDS |
| TGCTGACTTAAACGGTGGTT+TGG | 0.454513 | 4.4:+44489870 | MS.gene08709:CDS |
| GGACCTGCTGGTTTAAAACT+TGG | 0.454520 | 4.4:+44489142 | MS.gene08709:CDS |
| TCTGCATCTCAGGCTGGTCC+AGG | 0.454585 | 4.4:+44489685 | MS.gene08709:CDS |
| TTGCCTTCTGCATCTCAGGC+TGG | 0.454882 | 4.4:+44489679 | MS.gene08709:CDS |
| GAAGTACAAAGGGATCCATT+AGG | 0.456957 | 4.4:-44489055 | None:intergenic |
| CGGACAGATGCTGACTTAAA+CGG | 0.458317 | 4.4:+44489862 | MS.gene08709:CDS |
| CACATCTGCTCAGGTGGGTG+GGG | 0.465487 | 4.4:+44489438 | MS.gene08709:CDS |
| ATGCAGAAGGCAATGACCAC+AGG | 0.465646 | 4.4:-44489669 | None:intergenic |
| TCACCCATCAGTCGGAATAC+TGG | 0.470078 | 4.4:-44486387 | None:intergenic |
| AGGTTCCATTCAGGATTCAA+TGG | 0.470932 | 4.4:+44487081 | MS.gene08709:CDS |
| TGTAGTAGATTGAATTTGAA+AGG | 0.471804 | 4.4:-44485230 | None:intergenic |
| CAGTGGCTCCGAAAGTGGTC+GGG | 0.478789 | 4.4:+44489288 | MS.gene08709:CDS |
| TGCAGAGGCCTCTGATGCAT+TGG | 0.480231 | 4.4:+44489729 | MS.gene08709:CDS |
| AGACCTGGTTCTCAGTTGCT+TGG | 0.480715 | 4.4:+44487303 | MS.gene08709:CDS |
| AGACAATGGCGCAAATACTT+TGG | 0.481858 | 4.4:+44490122 | MS.gene08709:CDS |
| GGTTACTCCATGCCACCTCC+TGG | 0.482671 | 4.4:+44489556 | MS.gene08709:CDS |
| CGTGCAAGAGCATCTTCAAA+AGG | 0.484446 | 4.4:-44488374 | None:intergenic |
| AAAGAGTGAAAGTGAACGTC+TGG | 0.487302 | 4.4:+44489003 | MS.gene08709:CDS |
| GCACGCGTCTGTCGTTGTGT+TGG | 0.491160 | 4.4:+44488392 | MS.gene08709:CDS |
| CTCAGGAAAATGCAGATATC+GGG | 0.492701 | 4.4:+44485130 | MS.gene08709:intron |
| AATTGGTGGATGACACATAT+AGG | 0.496338 | 4.4:+44484882 | MS.gene08709:CDS |
| AAAACAAGAATTTGATGTTG+AGG | 0.498260 | 4.4:+44486954 | MS.gene08709:CDS |
| AGGTGAAGCCTGATGGCTCT+TGG | 0.500229 | 4.4:+44488969 | MS.gene08709:CDS |
| TGATCTAGCATCAAAGGGTC+AGG | 0.502689 | 4.4:+44485159 | MS.gene08709:CDS |
| GTGTATGGGTCAACAATTCC+AGG | 0.503406 | 4.4:-44489574 | None:intergenic |
| TTTGCGCCATTGTCTCTGGA+TGG | 0.506095 | 4.4:-44490114 | None:intergenic |
| ATTGATTATTCTACTACCAA+TGG | 0.508427 | 4.4:+44489352 | MS.gene08709:CDS |
| AACTGATGTGTTGCCACACT+TGG | 0.509642 | 4.4:-44485534 | None:intergenic |
| GGAAACAGGGGATTTGATCA+AGG | 0.511350 | 4.4:+44485288 | MS.gene08709:CDS |
| GAACCGAACAATTGGAATCC+TGG | 0.511458 | 4.4:-44489703 | None:intergenic |
| GTGTTAACCAGGGTGGTGGT+GGG | 0.511734 | 4.4:+44489326 | MS.gene08709:CDS |
| AGCCACTGATCTAGCATCAA+AGG | 0.512610 | 4.4:+44485153 | MS.gene08709:CDS |
| AATAATGTTGATTTAGCTCG+TGG | 0.515010 | 4.4:+44489400 | MS.gene08709:CDS |
| TCTCGGTGGAAGTTCATGCT+TGG | 0.515187 | 4.4:+44489609 | MS.gene08709:CDS |
| CATTTATGAATTAGAAGGGT+CGG | 0.519992 | 4.4:-44490166 | None:intergenic |
| TACTACCAATGGAATTGAGA+TGG | 0.520220 | 4.4:+44489363 | MS.gene08709:CDS |
| GGAGCTAACGGTCGTGATGA+TGG | 0.522397 | 4.4:+44487324 | MS.gene08709:CDS |
| TTGCGCCATTGTCTCTGGAT+GGG | 0.523797 | 4.4:-44490113 | None:intergenic |
| TTAACACGCCAAGAGCCATC+AGG | 0.524906 | 4.4:-44488977 | None:intergenic |
| ACACATCTGCTCAGGTGGGT+GGG | 0.527629 | 4.4:+44489437 | MS.gene08709:CDS |
| TAAAATTTATCAGGAACTGG+TGG | 0.527907 | 4.4:-44485592 | None:intergenic |
| TCTCAGTTGCTTGGAGCTAA+CGG | 0.528194 | 4.4:+44487312 | MS.gene08709:CDS |
| GTTTAAAACTTGGCATTAGG+AGG | 0.528847 | 4.4:+44489152 | MS.gene08709:CDS |
| TCCAGCAGTAGAAGTACAAA+GGG | 0.531371 | 4.4:-44489065 | None:intergenic |
| AGCAGCAGTGGCTCCGAAAG+TGG | 0.531558 | 4.4:+44489283 | MS.gene08709:CDS |
| AACAATTCCAGGAGGTGGCA+TGG | 0.531645 | 4.4:-44489563 | None:intergenic |
| GCATTAGGAGGAATCGCAAT+GGG | 0.531717 | 4.4:+44489164 | MS.gene08709:CDS |
| TGAAGATGTTACAGAGGTTG+AGG | 0.533950 | 4.4:+44488949 | MS.gene08709:CDS |
| ACCACCACCCTGGTTAACAC+TGG | 0.535166 | 4.4:-44489323 | None:intergenic |
| ATTCAAACCTTGCATTCACA+TGG | 0.535289 | 4.4:+44488618 | MS.gene08709:CDS |
| TGAAAGTACCATTAACTGCT+AGG | 0.535333 | 4.4:-44487118 | None:intergenic |
| AACACATCTGCTCAGGTGGG+TGG | 0.535405 | 4.4:+44489436 | MS.gene08709:CDS |
| CATCTCCAGCAAATGCCAAT+GGG | 0.537152 | 4.4:-44489900 | None:intergenic |
| ATTTAGGGATTCTTGGCCAA+TGG | 0.537251 | 4.4:+44489026 | MS.gene08709:CDS |
| TTCAAAACAGGGAAAGAAGC+AGG | 0.537787 | 4.4:+44483969 | MS.gene08709:CDS |
| TATTATTCCAGAGAAACCTA+TGG | 0.538683 | 4.4:+44485561 | MS.gene08709:CDS |
| GCATAACACATCTGCTCAGG+TGG | 0.539010 | 4.4:+44489432 | MS.gene08709:CDS |
| AATGAATCAACGGTCAAGAA+AGG | 0.539654 | 4.4:+44488669 | MS.gene08709:CDS |
| ATCAGTCGGAATACTGGTTG+TGG | 0.542117 | 4.4:-44486381 | None:intergenic |
| TGATGATCCCAGTGTTAACC+AGG | 0.542672 | 4.4:+44489315 | MS.gene08709:CDS |
| GCTCCAAGCAACTGAGAACC+AGG | 0.545103 | 4.4:-44487306 | None:intergenic |
| GGTGGTGCTGGCGGTAGTAA+TGG | 0.547848 | 4.4:+44490048 | MS.gene08709:CDS |
| TACGCATAACACATCTGCTC+AGG | 0.550755 | 4.4:+44489429 | MS.gene08709:CDS |
| TAGCGACAGTGATTTGGAAG+TGG | 0.551318 | 4.4:+44488442 | MS.gene08709:CDS |
| TGGTTGTTATTTGCAATTGG+AGG | 0.553691 | 4.4:-44489514 | None:intergenic |
| ACAACCAGTATTCCGACTGA+TGG | 0.554333 | 4.4:+44486383 | MS.gene08709:CDS |
| ATCACTGAACGGTTATGCAT+TGG | 0.555537 | 4.4:+44489786 | MS.gene08709:CDS |
| ACTGGTGGGATGCCTTCCAT+AGG | 0.557028 | 4.4:-44485577 | None:intergenic |
| TCATCTCCAGCAAATGCCAA+TGG | 0.557087 | 4.4:-44489901 | None:intergenic |
| TGGGCCAAGAAGAATGCTGT+TGG | 0.557207 | 4.4:+44484842 | MS.gene08709:CDS |
| AGAACATTTATGAATTAGAA+GGG | 0.557697 | 4.4:-44490170 | None:intergenic |
| GCCACTGATCTAGCATCAAA+GGG | 0.557914 | 4.4:+44485154 | MS.gene08709:CDS |
| CCCAGTGTTAACCAGGGTGG+TGG | 0.558647 | 4.4:+44489322 | MS.gene08709:CDS |
| GATCCTAAACTTAATTCCAA+AGG | 0.559168 | 4.4:+44488337 | MS.gene08709:intron |
| GCAGTGGCTCCGAAAGTGGT+CGG | 0.559727 | 4.4:+44489287 | MS.gene08709:CDS |
| GGGCCAAGAAGAATGCTGTT+GGG | 0.560934 | 4.4:+44484843 | MS.gene08709:CDS |
| TTCTGTAGGATCTCGTCGAT+CGG | 0.560941 | 4.4:+44484187 | MS.gene08709:intron |
| CACCAAAATGATATTGCAGA+TGG | 0.562331 | 4.4:+44489535 | MS.gene08709:CDS |
| CCACCACCCTGGTTAACACT+GGG | 0.563823 | 4.4:-44489322 | None:intergenic |
| ACAGATGCTGACTTAAACGG+TGG | 0.564719 | 4.4:+44489865 | MS.gene08709:CDS |
| TTCTGGTCATATATTAAGAG+AGG | 0.564933 | 4.4:+44489225 | MS.gene08709:CDS |
| AGAATCCATCTCAATTCCAT+TGG | 0.565368 | 4.4:-44489368 | None:intergenic |
| GGGTCAACAATTCCAGGAGG+TGG | 0.565780 | 4.4:-44489568 | None:intergenic |
| ACGCGTCTGTCGTTGTGTTG+GGG | 0.565862 | 4.4:+44488394 | MS.gene08709:CDS |
| AGACGACTCAGCTGGTCTTG+TGG | 0.566685 | 4.4:-44489947 | None:intergenic |
| GGCTCCGAAAGTGGTCGGGA+TGG | 0.567316 | 4.4:+44489292 | MS.gene08709:CDS |
| AGAGCAGGTGGCAAAATTGG+TGG | 0.568651 | 4.4:+44484868 | MS.gene08709:CDS |
| GATTCTGATCTTCAGTGTAT+GGG | 0.568709 | 4.4:-44489588 | None:intergenic |
| TGTGGCCATTGAATCCTGAA+TGG | 0.572530 | 4.4:-44487086 | None:intergenic |
| CTGTCTCTGTGGAAGTACAT+TGG | 0.572912 | 4.4:+44485267 | MS.gene08709:CDS |
| CTCCACGCACTGCACTGGGT+TGG | 0.574223 | 4.4:-44486890 | None:intergenic |
| CTCCAGCAGTAGAAGTACAA+AGG | 0.578719 | 4.4:-44489066 | None:intergenic |
| ACCCTTTGATGCTAGATCAG+TGG | 0.579842 | 4.4:-44485155 | None:intergenic |
| TTTCCGTATAAAAGAGCTCA+AGG | 0.582643 | 4.4:+44483924 | MS.gene08709:CDS |
| TTCTGCATAGACGACTCAGC+TGG | 0.582789 | 4.4:-44489955 | None:intergenic |
| TACACTGAAGATCAGAATCT+CGG | 0.583134 | 4.4:+44489592 | MS.gene08709:CDS |
| TGGTTTGGTTGACAACCCAT+TGG | 0.583485 | 4.4:+44489885 | MS.gene08709:CDS |
| CAAATGAACCAATGCATCAG+AGG | 0.583738 | 4.4:-44489737 | None:intergenic |
| TAGGGGTTCGAATTGTCAGA+AGG | 0.586441 | 4.4:+44487546 | MS.gene08709:CDS |
| ATCCATTAGGAAGATGCCAT+TGG | 0.587077 | 4.4:-44489042 | None:intergenic |
| AAACAACCCATGTGAATGCA+AGG | 0.588755 | 4.4:-44488625 | None:intergenic |
| GTCAGATAGTAGTAATGTGA+AGG | 0.588763 | 4.4:+44485186 | MS.gene08709:CDS |
| GAGGTTGAGGTGAAGCCTGA+TGG | 0.589171 | 4.4:+44488962 | MS.gene08709:CDS |
| TCTTAATATATGACCAGAAG+AGG | 0.589965 | 4.4:-44489221 | None:intergenic |
| TATTACCATTTATAGATGAG+TGG | 0.593609 | 4.4:+44488571 | MS.gene08709:intron |
| GATTGGACATCCCTTACTCT+CGG | 0.594442 | 4.4:+44490024 | MS.gene08709:CDS |
| GAATGCTGTTGGGAAAGAGC+AGG | 0.595394 | 4.4:+44484853 | MS.gene08709:CDS |
| TGCATAACCGTTCAGTGATG+AGG | 0.596581 | 4.4:-44489782 | None:intergenic |
| TCAACTCACAAGAGCAGACA+AGG | 0.599982 | 4.4:+44486921 | MS.gene08709:CDS |
| GTTATTCCAATGAGCAGCAG+TGG | 0.601585 | 4.4:+44489271 | MS.gene08709:CDS |
| ATTGTTCGGTTCTGATGCAG+AGG | 0.604658 | 4.4:+44489714 | MS.gene08709:CDS |
| AAAATTTATCAGGAACTGGT+GGG | 0.607402 | 4.4:-44485591 | None:intergenic |
| AAGGGATGTCCAATCTTCAG+TGG | 0.608756 | 4.4:-44490016 | None:intergenic |
| CAACCAGTATTCCGACTGAT+GGG | 0.609101 | 4.4:+44486384 | MS.gene08709:CDS |
| ATCACGCCGCATACAAAAGA+CGG | 0.610322 | 4.4:+44487476 | MS.gene08709:CDS |
| AGCATCTGTCCGTCCAGCAG+AGG | 0.610516 | 4.4:-44489851 | None:intergenic |
| CAGTTAGGACTTTCAAAACA+GGG | 0.613916 | 4.4:+44483958 | MS.gene08709:CDS |
| ACTCTCGGAGGTGGTGCTGG+CGG | 0.614564 | 4.4:+44490039 | MS.gene08709:CDS |
| GGCATTAGGAGGAATCGCAA+TGG | 0.614693 | 4.4:+44489163 | MS.gene08709:CDS |
| ACATCCCTTACTCTCGGAGG+TGG | 0.615368 | 4.4:+44490030 | MS.gene08709:CDS |
| CGCGTCTGTCGTTGTGTTGG+GGG | 0.617331 | 4.4:+44488395 | MS.gene08709:CDS |
| TGCTGTTGGGAAAGAGCAGG+TGG | 0.617341 | 4.4:+44484856 | MS.gene08709:CDS |
| TACAAGATTCCTCTGCTGGA+CGG | 0.618020 | 4.4:+44489842 | MS.gene08709:CDS |
| TTCAAACCTTGCATTCACAT+GGG | 0.620953 | 4.4:+44488619 | MS.gene08709:CDS |
| GTGGAAGTACATTGGAAACA+GGG | 0.621176 | 4.4:+44485275 | MS.gene08709:CDS |
| TGCAGAAGGCAATGACCACA+GGG | 0.622669 | 4.4:-44489668 | None:intergenic |
| ACAAAGATTCGCTGTCTCTG+TGG | 0.626008 | 4.4:+44485256 | MS.gene08709:CDS |
| CAATATGCCCACCACCACCC+TGG | 0.626286 | 4.4:-44489333 | None:intergenic |
| TCGGTGGAAGTTCATGCTTG+GGG | 0.626592 | 4.4:+44489611 | MS.gene08709:CDS |
| TACCAACCCAGTGCAGTGCG+TGG | 0.627424 | 4.4:+44486888 | MS.gene08709:CDS |
| AGCACCACCTCCGAGAGTAA+GGG | 0.628927 | 4.4:-44490034 | None:intergenic |
| TTAATTCCAAAGGAGTCTGA+CGG | 0.634359 | 4.4:+44488347 | MS.gene08709:CDS |
| CAAGTCCCATCCAGAGACAA+TGG | 0.637497 | 4.4:+44490108 | MS.gene08709:CDS |
| GGACCAGCCTGAGATGCAGA+AGG | 0.640187 | 4.4:-44489682 | None:intergenic |
| CCATGTACTCACCCATCAGT+CGG | 0.640779 | 4.4:-44486395 | None:intergenic |
| GCCAACTTTACAGGTAACAA+AGG | 0.641343 | 4.4:-44486359 | None:intergenic |
| AATTGCACCTCATCACTGAA+CGG | 0.645687 | 4.4:+44489775 | MS.gene08709:CDS |
| ATTCCAGAGAAACCTATGGA+AGG | 0.646238 | 4.4:+44485565 | MS.gene08709:CDS |
| CTGAAGCAAGTAAAACAGGA+AGG | 0.648396 | 4.4:+44489109 | MS.gene08709:CDS |
| TCCATACTCTCAGATGAGCA+AGG | 0.650138 | 4.4:+44484216 | MS.gene08709:CDS |
| GTGTATGCTTCTGAACGACA+AGG | 0.650450 | 4.4:+44487061 | MS.gene08709:CDS |
| TTGCGGTGAAGATGTTACAG+AGG | 0.656546 | 4.4:+44488943 | MS.gene08709:CDS |
| ACGACTCAGCTGGTCTTGTG+GGG | 0.660023 | 4.4:-44489945 | None:intergenic |
| CATAACACATCTGCTCAGGT+GGG | 0.660429 | 4.4:+44489433 | MS.gene08709:CDS |
| ATTCGAACAACTAATAGACC+TGG | 0.670126 | 4.4:+44487288 | MS.gene08709:CDS |
| CTGGTACAGATGATTAATTG+CGG | 0.671508 | 4.4:+44488926 | MS.gene08709:intron |
| CACAAGAGCAGACAAGGACA+TGG | 0.672436 | 4.4:+44486927 | MS.gene08709:CDS |
| TGGAAGTACATTGGAAACAG+GGG | 0.683506 | 4.4:+44485276 | MS.gene08709:CDS |
| AAAGCCTTACCGGACAACGA+AGG | 0.691607 | 4.4:-44488487 | None:intergenic |
| ACTGAAGATCAGAATCTCGG+TGG | 0.691772 | 4.4:+44489595 | MS.gene08709:CDS |
| ATGATGCAAGATGCCAAGTG+TGG | 0.722474 | 4.4:+44485521 | MS.gene08709:CDS |
| ACTGCTAGGTCTGTATACTG+TGG | 0.722592 | 4.4:-44487104 | None:intergenic |
| TGGACATCCCTTACTCTCGG+AGG | 0.740031 | 4.4:+44490027 | MS.gene08709:CDS |
| GATGATCCCAGTGTTAACCA+GGG | 0.753201 | 4.4:+44489316 | MS.gene08709:CDS |
| TATGGGTCAACAATTCCAGG+AGG | 0.765207 | 4.4:-44489571 | None:intergenic |
| GATCCCAGTGTTAACCAGGG+TGG | 0.772459 | 4.4:+44489319 | MS.gene08709:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 44481961 | 44490185 | 44481961 | ID=MS.gene08709 |
| chr4.4 | mRNA | 44481961 | 44490185 | 44481961 | ID=MS.gene08709.t1;Parent=MS.gene08709 |
| chr4.4 | exon | 44481961 | 44482008 | 44481961 | ID=MS.gene08709.t1.exon1;Parent=MS.gene08709.t1 |
| chr4.4 | CDS | 44481961 | 44482008 | 44481961 | ID=cds.MS.gene08709.t1;Parent=MS.gene08709.t1 |
| chr4.4 | exon | 44483910 | 44483990 | 44483910 | ID=MS.gene08709.t1.exon2;Parent=MS.gene08709.t1 |
| chr4.4 | CDS | 44483910 | 44483990 | 44483910 | ID=cds.MS.gene08709.t1;Parent=MS.gene08709.t1 |
| chr4.4 | exon | 44484195 | 44484237 | 44484195 | ID=MS.gene08709.t1.exon3;Parent=MS.gene08709.t1 |
| chr4.4 | CDS | 44484195 | 44484237 | 44484195 | ID=cds.MS.gene08709.t1;Parent=MS.gene08709.t1 |
| chr4.4 | exon | 44484831 | 44484903 | 44484831 | ID=MS.gene08709.t1.exon4;Parent=MS.gene08709.t1 |
| chr4.4 | CDS | 44484831 | 44484903 | 44484831 | ID=cds.MS.gene08709.t1;Parent=MS.gene08709.t1 |
| chr4.4 | exon | 44485135 | 44485309 | 44485135 | ID=MS.gene08709.t1.exon5;Parent=MS.gene08709.t1 |
| chr4.4 | CDS | 44485135 | 44485309 | 44485135 | ID=cds.MS.gene08709.t1;Parent=MS.gene08709.t1 |
| chr4.4 | exon | 44485517 | 44485647 | 44485517 | ID=MS.gene08709.t1.exon6;Parent=MS.gene08709.t1 |
| chr4.4 | CDS | 44485517 | 44485647 | 44485517 | ID=cds.MS.gene08709.t1;Parent=MS.gene08709.t1 |
| chr4.4 | exon | 44486337 | 44486405 | 44486337 | ID=MS.gene08709.t1.exon7;Parent=MS.gene08709.t1 |
| chr4.4 | CDS | 44486337 | 44486405 | 44486337 | ID=cds.MS.gene08709.t1;Parent=MS.gene08709.t1 |
| chr4.4 | exon | 44486888 | 44486975 | 44486888 | ID=MS.gene08709.t1.exon8;Parent=MS.gene08709.t1 |
| chr4.4 | CDS | 44486888 | 44486975 | 44486888 | ID=cds.MS.gene08709.t1;Parent=MS.gene08709.t1 |
| chr4.4 | exon | 44487056 | 44487131 | 44487056 | ID=MS.gene08709.t1.exon9;Parent=MS.gene08709.t1 |
| chr4.4 | CDS | 44487056 | 44487131 | 44487056 | ID=cds.MS.gene08709.t1;Parent=MS.gene08709.t1 |
| chr4.4 | exon | 44487280 | 44487353 | 44487280 | ID=MS.gene08709.t1.exon10;Parent=MS.gene08709.t1 |
| chr4.4 | CDS | 44487280 | 44487353 | 44487280 | ID=cds.MS.gene08709.t1;Parent=MS.gene08709.t1 |
| chr4.4 | exon | 44487476 | 44487583 | 44487476 | ID=MS.gene08709.t1.exon11;Parent=MS.gene08709.t1 |
| chr4.4 | CDS | 44487476 | 44487583 | 44487476 | ID=cds.MS.gene08709.t1;Parent=MS.gene08709.t1 |
| chr4.4 | exon | 44488338 | 44488499 | 44488338 | ID=MS.gene08709.t1.exon12;Parent=MS.gene08709.t1 |
| chr4.4 | CDS | 44488338 | 44488499 | 44488338 | ID=cds.MS.gene08709.t1;Parent=MS.gene08709.t1 |
| chr4.4 | exon | 44488586 | 44488690 | 44488586 | ID=MS.gene08709.t1.exon13;Parent=MS.gene08709.t1 |
| chr4.4 | CDS | 44488586 | 44488690 | 44488586 | ID=cds.MS.gene08709.t1;Parent=MS.gene08709.t1 |
| chr4.4 | exon | 44488778 | 44488858 | 44488778 | ID=MS.gene08709.t1.exon14;Parent=MS.gene08709.t1 |
| chr4.4 | CDS | 44488778 | 44488858 | 44488778 | ID=cds.MS.gene08709.t1;Parent=MS.gene08709.t1 |
| chr4.4 | exon | 44488935 | 44490185 | 44488935 | ID=MS.gene08709.t1.exon15;Parent=MS.gene08709.t1 |
| chr4.4 | CDS | 44488935 | 44490185 | 44488935 | ID=cds.MS.gene08709.t1;Parent=MS.gene08709.t1 |
| Gene Sequence |
| Protein sequence |
