AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene08718

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08718.t1 MTR_4g059790 96.498 257 9 0 1 257 1 257 2.99e-178 493
MS.gene08718.t1 MTR_4g059840 94.942 257 13 0 1 257 1 257 1.38e-162 454
MS.gene08718.t1 MTR_4g053380 85.771 253 30 3 1 250 2 251 3.56e-136 387
MS.gene08718.t1 MTR_2g093970 58.947 285 99 5 11 284 10 287 1.82e-95 284
MS.gene08718.t1 MTR_8g087450 57.143 210 77 3 22 220 17 224 7.74e-75 231
MS.gene08718.t1 MTR_2g017970 56.075 214 84 3 73 285 68 272 2.20e-73 227
MS.gene08718.t1 MTR_2g017960 62.032 187 61 3 73 258 68 245 1.09e-71 223
MS.gene08718.t1 MTR_2g093980 52.489 221 95 4 5 221 3 217 7.27e-70 218
MS.gene08718.t1 MTR_4g059780 55.838 197 78 3 30 222 48 239 1.16e-66 211
MS.gene08718.t1 MTR_8g087460 51.883 239 89 8 5 220 7 242 1.81e-66 211
MS.gene08718.t1 MTR_8g087470 51.653 242 91 8 2 220 4 242 2.48e-66 210
MS.gene08718.t1 MTR_2g017950 46.182 275 114 9 1 254 1 262 3.11e-66 209
MS.gene08718.t1 MTR_4g059720 50.000 216 76 5 10 225 9 192 1.39e-58 188
MS.gene08718.t1 MTR_2g093990 55.034 149 66 1 73 221 41 188 1.11e-50 168
MS.gene08718.t1 MTR_7g101080 44.937 158 85 2 65 221 32 188 8.38e-39 137
MS.gene08718.t1 MTR_2g090765 39.500 200 113 2 66 258 31 229 2.93e-31 117
MS.gene08718.t1 MTR_7g075453 32.222 180 117 2 66 245 177 351 3.39e-19 87.4
MS.gene08718.t1 MTR_5g098060 29.885 174 114 4 72 241 47 216 2.17e-16 77.8
MS.gene08718.t1 MTR_5g098420 28.464 267 153 11 40 284 167 417 1.68e-13 70.9
MS.gene08718.t1 MTR_2g437700 30.519 154 100 4 72 221 194 344 4.22e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08718.t1 AT5G03170 47.305 167 87 1 66 231 29 195 2.06e-47 159
MS.gene08718.t1 AT5G60490 54.000 150 67 2 73 221 39 187 5.58e-47 158
MS.gene08718.t1 AT5G44130 35.789 190 116 3 72 256 35 223 9.62e-28 108
MS.gene08718.t1 AT2G20520 35.169 236 143 7 52 284 19 247 1.85e-27 107
MS.gene08718.t1 AT1G03870 35.354 198 119 4 72 261 38 234 9.39e-26 102
MS.gene08718.t1 AT3G60900 29.121 182 124 2 66 247 183 359 2.44e-16 79.3
MS.gene08718.t1 AT3G46550 30.645 186 115 7 58 233 193 374 4.12e-14 72.8
MS.gene08718.t1 AT2G04780 30.263 152 100 3 72 221 45 192 5.18e-13 68.2
MS.gene08718.t1 AT2G04780 30.263 152 100 3 72 221 45 192 5.18e-13 68.2

Find 82 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACATTAAGTTCCACCTTTC+CGG 0.174394 4.2:-43838717 None:intergenic
ATTGAAGTTTATATTGGATT+TGG 0.273469 4.2:+43839332 MS.gene08718:intron
GCTGTATCGGTTGAAGGTTC+TGG 0.299723 4.2:-43838908 None:intergenic
ACCGGGGAAGGCACCATCTT+TGG 0.311761 4.2:+43838883 MS.gene08718:CDS
GTAAATAGCAAGACGTTTAT+CGG 0.328237 4.2:-43838810 None:intergenic
CCAACTCAATTCACAACTAT+TGG 0.336498 4.2:+43838499 MS.gene08718:CDS
ATCTGATGATGTGTCTTTAT+CGG 0.338588 4.2:-43838945 None:intergenic
TCAACAGTGCCTGCGGTGTC+AGG 0.354935 4.2:-43838401 None:intergenic
CGTCTTGCTATTTACAAAGT+TGG 0.358413 4.2:+43838818 MS.gene08718:CDS
ACATTAAGTTCCACCTTTCC+GGG 0.361148 4.2:-43838716 None:intergenic
TAGTGGTGGTTGAATACAAT+AGG 0.367638 4.2:-43838256 None:intergenic
AATGAAGGTACCAATGGTTT+AGG 0.368336 4.2:-43838353 None:intergenic
TGGCAAAGTGCTTCTTCCTA+TGG 0.388422 4.2:+43838838 MS.gene08718:CDS
GCCTTTGCTGTATCGGTTGA+AGG 0.393378 4.2:-43838914 None:intergenic
TCTGATGATGTGTCTTTATC+GGG 0.411707 4.2:-43838944 None:intergenic
CACCTTTCCGGGTTTAGCTC+CGG 0.421883 4.2:-43838705 None:intergenic
AACCCTGTGAGAACACTTGC+CGG 0.424215 4.2:+43838686 MS.gene08718:CDS
GTATCACATTGCCAAAGTTC+AGG 0.426487 4.2:+43839356 MS.gene08718:CDS
GGAAGTGTGAACATATCAAC+TGG 0.430205 4.2:+43838752 MS.gene08718:CDS
GCAGCTGGTGTGGTTGGAGC+TGG 0.431548 4.2:-43838326 None:intergenic
GCCCATCGGAAAGAGAGTTT+AGG 0.440037 4.2:-43838592 None:intergenic
TGTATGCCTTCGCCTTTCTC+AGG 0.442653 4.2:-43838436 None:intergenic
CGTCAACAGCGCCTGAACTT+TGG 0.443566 4.2:-43839367 None:intergenic
GAAGTGAACACGACAATCAA+TGG 0.449825 4.2:+43838776 MS.gene08718:CDS
TTTAGGCGCCTTTGCTGTAT+CGG 0.459218 4.2:-43838921 None:intergenic
CCGGATGACAGTGCCTTCTC+AGG 0.460688 4.2:+43838554 MS.gene08718:CDS
GGAGCTGCAGCTGGTGTGGT+TGG 0.478200 4.2:-43838332 None:intergenic
GAACTTAATGTCGTGAGTTA+CGG 0.484314 4.2:+43838728 MS.gene08718:CDS
CCTGAGAAGGCACTGTCATC+CGG 0.484418 4.2:-43838554 None:intergenic
GCTGGTAGTGTAGGTTGTAC+AGG 0.487178 4.2:-43838308 None:intergenic
GTGGTTGGAGCTGGTAGTGT+AGG 0.493589 4.2:-43838317 None:intergenic
GCCAAAGATGGTGCCTTCCC+CGG 0.494928 4.2:-43838884 None:intergenic
AGTGGTGGTTGAATACAATA+GGG 0.497408 4.2:-43838255 None:intergenic
GAGAGGCGAGAGCTTTGTAA+TGG 0.497618 4.2:+43839198 MS.gene08718:CDS
CCAATAGTTGTGAATTGAGT+TGG 0.499317 4.2:-43838499 None:intergenic
TTCCTAAACTCTCTTTCCGA+TGG 0.502985 4.2:+43838590 MS.gene08718:CDS
CATTGCTAAGGCACCGGGGA+AGG 0.507874 4.2:+43838871 MS.gene08718:CDS
CAACAGTGCCTGCGGTGTCA+GGG 0.508035 4.2:-43838400 None:intergenic
CTTAGGGAGTATACTTTGAG+AGG 0.508812 4.2:+43839181 MS.gene08718:intron
GGTTGTACAGGAGCAGTAGC+AGG 0.514138 4.2:-43838296 None:intergenic
GCTCCGGCAAGTGTTCTCAC+AGG 0.514999 4.2:-43838689 None:intergenic
CTAGGTGACTCTGGTAATGA+AGG 0.531327 4.2:-43838368 None:intergenic
AAGTGAACACGACAATCAAT+GGG 0.531816 4.2:+43838777 MS.gene08718:CDS
AGTGCCTGCGGTGTCAGGGG+TGG 0.531927 4.2:-43838396 None:intergenic
GCAGGCACTGTTGACATTGT+CGG 0.533562 4.2:+43838410 MS.gene08718:CDS
GAAGGTTCTGGTGCCAAAGA+TGG 0.536850 4.2:-43838896 None:intergenic
GCCTTCTCAGGACTCAAGGC+GGG 0.537555 4.2:+43838566 MS.gene08718:CDS
TGGATTAACAATTCTTGCAC+CGG 0.540856 4.2:+43838535 MS.gene08718:CDS
GATGTGTCTTTATCGGGTTT+AGG 0.541363 4.2:-43838938 None:intergenic
AGCTGCAGCTCCTAAACCAT+TGG 0.544279 4.2:+43838343 MS.gene08718:CDS
CTCCGGCAAGTGTTCTCACA+GGG 0.544568 4.2:-43838688 None:intergenic
TCCTAAACTCTCTTTCCGAT+GGG 0.544697 4.2:+43838591 MS.gene08718:CDS
GTGGAATCACTAGGTGACTC+TGG 0.548332 4.2:-43838377 None:intergenic
CATTGTCGGAATCCTGAGAA+AGG 0.566305 4.2:+43838424 MS.gene08718:CDS
GCAATGGAAAAGAAATCCAT+AGG 0.568702 4.2:-43838854 None:intergenic
GATTCCACCCCTGACACCGC+AGG 0.578533 4.2:+43838392 MS.gene08718:CDS
CACATCATCAGATTCGTCGC+AGG 0.581324 4.2:+43838955 MS.gene08718:CDS
GTGTCAGGGGTGGAATCACT+AGG 0.582776 4.2:-43838386 None:intergenic
TCTGGTAATGAAGGTACCAA+TGG 0.585762 4.2:-43838359 None:intergenic
AACAGTGCCTGCGGTGTCAG+GGG 0.587591 4.2:-43838399 None:intergenic
AACTAGTATTGTAACTGAGA+AGG 0.595775 4.2:-43838231 None:intergenic
AATGGTTTAGGAGCTGCAGC+TGG 0.597225 4.2:-43838341 None:intergenic
TTTAGGAGCTGCAGCTGGTG+TGG 0.597546 4.2:-43838336 None:intergenic
CAGTGCCTTCTCAGGACTCA+AGG 0.598053 4.2:+43838562 MS.gene08718:CDS
CGGAATCCTGAGAAAGGCGA+AGG 0.598403 4.2:+43838430 MS.gene08718:CDS
TGCCGGAGCTAAACCCGGAA+AGG 0.606244 4.2:+43838703 MS.gene08718:CDS
GTTGTGGTGATACTATCATA+TGG 0.608181 4.2:+43839234 MS.gene08718:CDS
CTTCCCCGGTGCCTTAGCAA+TGG 0.608846 4.2:-43838870 None:intergenic
TCCCGCCTTGAGTCCTGAGA+AGG 0.611208 4.2:-43838567 None:intergenic
ACCTTCAACCGATACAGCAA+AGG 0.611839 4.2:+43838913 MS.gene08718:CDS
ACACTTGCCGGAGCTAAACC+CGG 0.612612 4.2:+43838698 MS.gene08718:CDS
CTTAATGTCGTGAGTTACGG+TGG 0.615053 4.2:+43838731 MS.gene08718:CDS
GACAATGTCAACAGTGCCTG+CGG 0.617535 4.2:-43838408 None:intergenic
CGGAGCTAAACCCGGAAAGG+TGG 0.627000 4.2:+43838706 MS.gene08718:CDS
TGGTTTGCGTGACTATGTTG+TGG 0.629462 4.2:+43839218 MS.gene08718:CDS
ATACATAGTCTGAAATAACA+TGG 0.642288 4.2:-43838637 None:intergenic
TAATTCAGATAAAGTAGTGG+TGG 0.645296 4.2:-43838270 None:intergenic
TGCCTTCTCAGGACTCAAGG+CGG 0.646819 4.2:+43838565 MS.gene08718:CDS
GAAGTGTGAACATATCAACT+GGG 0.654476 4.2:+43838753 MS.gene08718:CDS
TGATAATTCAGATAAAGTAG+TGG 0.674305 4.2:-43838273 None:intergenic
AAGTGTGAACATATCAACTG+GGG 0.748931 4.2:+43838754 MS.gene08718:CDS
TTTCCATTGCTAAGGCACCG+GGG 0.752801 4.2:+43838867 MS.gene08718:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAAACTTCAATAAAAA+TGG - chr4.2:43839327-43839346 None:intergenic 10.0%
!!! ATTTTTATTGAAGTTTATAT+TGG + chr4.2:43839326-43839345 MS.gene08718:intron 10.0%
!!! GTTTTTGAATTTTTATCTTA+GGG + chr4.2:43839165-43839184 MS.gene08718:intron 15.0%
!!! TGTTTTTGAATTTTTATCTT+AGG + chr4.2:43839164-43839183 MS.gene08718:intron 15.0%
!! ATTGAAGTTTATATTGGATT+TGG + chr4.2:43839332-43839351 MS.gene08718:intron 20.0%
!!! ACTTTCTGTTACAATTTTTT+TGG + chr4.2:43839132-43839151 MS.gene08718:intron 20.0%
!!! CTTTCTGTTACAATTTTTTT+GGG + chr4.2:43839133-43839152 MS.gene08718:intron 20.0%
! AAAAATGGTCCAAATTGTTT+AGG - chr4.2:43839312-43839331 None:intergenic 25.0%
! TAGGAAAGAAAGATGATAAT+TGG - chr4.2:43839293-43839312 None:intergenic 25.0%
! TCTTTCTTTCCTAAACAATT+TGG + chr4.2:43839300-43839319 MS.gene08718:intron 25.0%
! TGATAATTCAGATAAAGTAG+TGG - chr4.2:43838276-43838295 None:intergenic 25.0%
!! ATACATAGTCTGAAATAACA+TGG - chr4.2:43838640-43838659 None:intergenic 25.0%
AACTAGTATTGTAACTGAGA+AGG - chr4.2:43838234-43838253 None:intergenic 30.0%
GTAAATAGCAAGACGTTTAT+CGG - chr4.2:43838813-43838832 None:intergenic 30.0%
TAATTCAGATAAAGTAGTGG+TGG - chr4.2:43838273-43838292 None:intergenic 30.0%
! ATCTGATGATGTGTCTTTAT+CGG - chr4.2:43838948-43838967 None:intergenic 30.0%
AAGTGAACACGACAATCAAT+GGG + chr4.2:43838777-43838796 MS.gene08718:CDS 35.0%
AAGTGTGAACATATCAACTG+GGG + chr4.2:43838754-43838773 MS.gene08718:CDS 35.0%
AATCCAACTGAAAACAAGTC+TGG + chr4.2:43838983-43839002 MS.gene08718:intron 35.0%
AGTGGTGGTTGAATACAATA+GGG - chr4.2:43838258-43838277 None:intergenic 35.0%
CAACTATTGGCAACAAAAAC+AGG + chr4.2:43838512-43838531 MS.gene08718:CDS 35.0%
CCAACTCAATTCACAACTAT+TGG + chr4.2:43838499-43838518 MS.gene08718:CDS 35.0%
CCAATAGTTGTGAATTGAGT+TGG - chr4.2:43838502-43838521 None:intergenic 35.0%
GAACTTAATGTCGTGAGTTA+CGG + chr4.2:43838728-43838747 MS.gene08718:CDS 35.0%
GAAGTGTGAACATATCAACT+GGG + chr4.2:43838753-43838772 MS.gene08718:CDS 35.0%
GCAATGGAAAAGAAATCCAT+AGG - chr4.2:43838857-43838876 None:intergenic 35.0%
GTTGTGGTGATACTATCATA+TGG + chr4.2:43839234-43839253 MS.gene08718:CDS 35.0%
TAGTGGTGGTTGAATACAAT+AGG - chr4.2:43838259-43838278 None:intergenic 35.0%
TGGATTAACAATTCTTGCAC+CGG + chr4.2:43838535-43838554 MS.gene08718:CDS 35.0%
! ACTTGGACTTGTATTAGCTT+TGG + chr4.2:43839039-43839058 MS.gene08718:intron 35.0%
! GGATTTCTTTTCCATTGCTA+AGG + chr4.2:43838859-43838878 MS.gene08718:CDS 35.0%
! TCTGATGATGTGTCTTTATC+GGG - chr4.2:43838947-43838966 None:intergenic 35.0%
!! AATGAAGGTACCAATGGTTT+AGG - chr4.2:43838356-43838375 None:intergenic 35.0%
!! CGTCTTGCTATTTACAAAGT+TGG + chr4.2:43838818-43838837 MS.gene08718:CDS 35.0%
ACATTAAGTTCCACCTTTCC+GGG - chr4.2:43838719-43838738 None:intergenic 40.0%
CTATTGGCAACAAAAACAGG+TGG + chr4.2:43838515-43838534 MS.gene08718:CDS 40.0%
GAAGTGAACACGACAATCAA+TGG + chr4.2:43838776-43838795 MS.gene08718:CDS 40.0%
GACATTAAGTTCCACCTTTC+CGG - chr4.2:43838720-43838739 None:intergenic 40.0%
GATGTGTCTTTATCGGGTTT+AGG - chr4.2:43838941-43838960 None:intergenic 40.0%
GTATCACATTGCCAAAGTTC+AGG + chr4.2:43839356-43839375 MS.gene08718:CDS 40.0%
TATGGAAAGTGGATGTCACT+TGG + chr4.2:43839022-43839041 MS.gene08718:intron 40.0%
TCAAGGTTGTGTATGGAAAG+TGG + chr4.2:43839011-43839030 MS.gene08718:intron 40.0%
TCCTAAACTCTCTTTCCGAT+GGG + chr4.2:43838591-43838610 MS.gene08718:CDS 40.0%
TTCCTAAACTCTCTTTCCGA+TGG + chr4.2:43838590-43838609 MS.gene08718:CDS 40.0%
! CTTAGGGAGTATACTTTGAG+AGG + chr4.2:43839181-43839200 MS.gene08718:intron 40.0%
! GGAAGTGTGAACATATCAAC+TGG + chr4.2:43838752-43838771 MS.gene08718:CDS 40.0%
!! AAACAAGTCTGGCTCTATCA+AGG + chr4.2:43838994-43839013 MS.gene08718:intron 40.0%
!! TCTGGTAATGAAGGTACCAA+TGG - chr4.2:43838362-43838381 None:intergenic 40.0%
!! TGGACTTGTATTAGCTTTGG+TGG + chr4.2:43839042-43839061 MS.gene08718:intron 40.0%
ACCTTCAACCGATACAGCAA+AGG + chr4.2:43838913-43838932 MS.gene08718:CDS 45.0%
CATTGTCGGAATCCTGAGAA+AGG + chr4.2:43838424-43838443 MS.gene08718:CDS 45.0%
CTTAATGTCGTGAGTTACGG+TGG + chr4.2:43838731-43838750 MS.gene08718:CDS 45.0%
GGCTCTATCAAGGTTGTGTA+TGG + chr4.2:43839004-43839023 MS.gene08718:intron 45.0%
! CTAGGTGACTCTGGTAATGA+AGG - chr4.2:43838371-43838390 None:intergenic 45.0%
! CTTTTCCATTGCTAAGGCAC+CGG + chr4.2:43838865-43838884 MS.gene08718:CDS 45.0%
! TGGCAAAGTGCTTCTTCCTA+TGG + chr4.2:43838838-43838857 MS.gene08718:CDS 45.0%
! TGGTTTGCGTGACTATGTTG+TGG + chr4.2:43839218-43839237 MS.gene08718:CDS 45.0%
! TTTAGGCGCCTTTGCTGTAT+CGG - chr4.2:43838924-43838943 None:intergenic 45.0%
!! GAGCCAGACTTGTTTTCAGT+TGG - chr4.2:43838989-43839008 None:intergenic 45.0%
!! TTTTCCATTGCTAAGGCACC+GGG + chr4.2:43838866-43838885 MS.gene08718:CDS 45.0%
AACCCTGTGAGAACACTTGC+CGG + chr4.2:43838686-43838705 MS.gene08718:CDS 50.0%
AATGGTTTAGGAGCTGCAGC+TGG - chr4.2:43838344-43838363 None:intergenic 50.0%
AGCTGCAGCTCCTAAACCAT+TGG + chr4.2:43838343-43838362 MS.gene08718:CDS 50.0%
CACATCATCAGATTCGTCGC+AGG + chr4.2:43838955-43838974 MS.gene08718:CDS 50.0%
GACAATGTCAACAGTGCCTG+CGG - chr4.2:43838411-43838430 None:intergenic 50.0%
GCCCATCGGAAAGAGAGTTT+AGG - chr4.2:43838595-43838614 None:intergenic 50.0%
GTGGAATCACTAGGTGACTC+TGG - chr4.2:43838380-43838399 None:intergenic 50.0%
TGTATGCCTTCGCCTTTCTC+AGG - chr4.2:43838439-43838458 None:intergenic 50.0%
! CAACTCGAGCTTTTGCCCAT+CGG - chr4.2:43838609-43838628 None:intergenic 50.0%
! GAAGGTTCTGGTGCCAAAGA+TGG - chr4.2:43838899-43838918 None:intergenic 50.0%
! GAGAGGCGAGAGCTTTGTAA+TGG + chr4.2:43839198-43839217 MS.gene08718:CDS 50.0%
! GCAGGCACTGTTGACATTGT+CGG + chr4.2:43838410-43838429 MS.gene08718:CDS 50.0%
! GCTGGTAGTGTAGGTTGTAC+AGG - chr4.2:43838311-43838330 None:intergenic 50.0%
!! GCCTTTGCTGTATCGGTTGA+AGG - chr4.2:43838917-43838936 None:intergenic 50.0%
!! GCTGTATCGGTTGAAGGTTC+TGG - chr4.2:43838911-43838930 None:intergenic 50.0%
!! TTTCCATTGCTAAGGCACCG+GGG + chr4.2:43838867-43838886 MS.gene08718:CDS 50.0%
ACACTTGCCGGAGCTAAACC+CGG + chr4.2:43838698-43838717 MS.gene08718:CDS 55.0%
CAGTGCCTTCTCAGGACTCA+AGG + chr4.2:43838562-43838581 MS.gene08718:CDS 55.0%
CGGAATCCTGAGAAAGGCGA+AGG + chr4.2:43838430-43838449 MS.gene08718:CDS 55.0%
CGTCAACAGCGCCTGAACTT+TGG - chr4.2:43839370-43839389 None:intergenic 55.0%
CTCCGGCAAGTGTTCTCACA+GGG - chr4.2:43838691-43838710 None:intergenic 55.0%
GGTTGTACAGGAGCAGTAGC+AGG - chr4.2:43838299-43838318 None:intergenic 55.0%
GTGTCAGGGGTGGAATCACT+AGG - chr4.2:43838389-43838408 None:intergenic 55.0%
TGCCTTCTCAGGACTCAAGG+CGG + chr4.2:43838565-43838584 MS.gene08718:CDS 55.0%
TTTAGGAGCTGCAGCTGGTG+TGG - chr4.2:43838339-43838358 None:intergenic 55.0%
! CACCTTTCCGGGTTTAGCTC+CGG - chr4.2:43838708-43838727 None:intergenic 55.0%
! GTGGTTGGAGCTGGTAGTGT+AGG - chr4.2:43838320-43838339 None:intergenic 55.0%
!! CCTGAGAAGGCACTGTCATC+CGG - chr4.2:43838557-43838576 None:intergenic 55.0%
CCGGATGACAGTGCCTTCTC+AGG + chr4.2:43838554-43838573 MS.gene08718:CDS 60.0%
CGGAGCTAAACCCGGAAAGG+TGG + chr4.2:43838706-43838725 MS.gene08718:CDS 60.0%
CTTCCCCGGTGCCTTAGCAA+TGG - chr4.2:43838873-43838892 None:intergenic 60.0%
GCCAAAGATGGTGCCTTCCC+CGG - chr4.2:43838887-43838906 None:intergenic 60.0%
GCCTTCTCAGGACTCAAGGC+GGG + chr4.2:43838566-43838585 MS.gene08718:CDS 60.0%
GCTCCGGCAAGTGTTCTCAC+AGG - chr4.2:43838692-43838711 None:intergenic 60.0%
TCAACAGTGCCTGCGGTGTC+AGG - chr4.2:43838404-43838423 None:intergenic 60.0%
TCCCGCCTTGAGTCCTGAGA+AGG - chr4.2:43838570-43838589 None:intergenic 60.0%
TGCCGGAGCTAAACCCGGAA+AGG + chr4.2:43838703-43838722 MS.gene08718:CDS 60.0%
! AACAGTGCCTGCGGTGTCAG+GGG - chr4.2:43838402-43838421 None:intergenic 60.0%
! CAACAGTGCCTGCGGTGTCA+GGG - chr4.2:43838403-43838422 None:intergenic 60.0%
!! ACCGGGGAAGGCACCATCTT+TGG + chr4.2:43838883-43838902 MS.gene08718:CDS 60.0%
!! CATTGCTAAGGCACCGGGGA+AGG + chr4.2:43838871-43838890 MS.gene08718:CDS 60.0%
GATTCCACCCCTGACACCGC+AGG + chr4.2:43838392-43838411 MS.gene08718:CDS 65.0%
GCAGCTGGTGTGGTTGGAGC+TGG - chr4.2:43838329-43838348 None:intergenic 65.0%
GGAGCTGCAGCTGGTGTGGT+TGG - chr4.2:43838335-43838354 None:intergenic 65.0%
! AGTGCCTGCGGTGTCAGGGG+TGG - chr4.2:43838399-43838418 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 43838206 43839397 43838206 ID=MS.gene08718
chr4.2 mRNA 43838206 43839397 43838206 ID=MS.gene08718.t1;Parent=MS.gene08718
chr4.2 exon 43838206 43838976 43838206 ID=MS.gene08718.t1.exon1;Parent=MS.gene08718.t1
chr4.2 CDS 43838206 43838976 43838206 ID=cds.MS.gene08718.t1;Parent=MS.gene08718.t1
chr4.2 exon 43839186 43839255 43839186 ID=MS.gene08718.t1.exon2;Parent=MS.gene08718.t1
chr4.2 CDS 43839186 43839255 43839186 ID=cds.MS.gene08718.t1;Parent=MS.gene08718.t1
chr4.2 exon 43839339 43839397 43839339 ID=MS.gene08718.t1.exon3;Parent=MS.gene08718.t1
chr4.2 CDS 43839339 43839397 43839339 ID=cds.MS.gene08718.t1;Parent=MS.gene08718.t1
Gene Sequence

>MS.gene08718

ATGATTAGAACTCAATCTCTCTTGTCCTTCTCAGTTACAATACTAGTTTCCCTATTGTATTCAACCACCACTACTTTATCTGAATTATCACCTGCTACTGCTCCTGTACAACCTACACTACCAGCTCCAACCACACCAGCTGCAGCTCCTAAACCATTGGTACCTTCATTACCAGAGTCACCTAGTGATTCCACCCCTGACACCGCAGGCACTGTTGACATTGTCGGAATCCTGAGAAAGGCGAAGGCATACAATGTCTTCATTCGACTCATGAAAACAACTCAATTGATCAACCAACTCAATTCACAACTATTGGCAACAAAAACAGGTGGATTAACAATTCTTGCACCGGATGACAGTGCCTTCTCAGGACTCAAGGCGGGATTCCTAAACTCTCTTTCCGATGGGCAAAAGCTCGAGTTGTTACAGTTCCATGTTATTTCAGACTATGTATCTAGCTCTAACTTCGATACTCTAACAAACCCTGTGAGAACACTTGCCGGAGCTAAACCCGGAAAGGTGGAACTTAATGTCGTGAGTTACGGTGGAAGTGTGAACATATCAACTGGGGAAGTGAACACGACAATCAATGGGATTATATATACCGATAAACGTCTTGCTATTTACAAAGTTGGCAAAGTGCTTCTTCCTATGGATTTCTTTTCCATTGCTAAGGCACCGGGGAAGGCACCATCTTTGGCACCAGAACCTTCAACCGATACAGCAAAGGCGCCTAAACCCGATAAAGACACATCATCAGATTCGTCGCAGGTAATTAATCCAACTGAAAACAAGTCTGGCTCTATCAAGGTTGTGTATGGAAAGTGGATGTCACTTGGACTTGTATTAGCTTTGGTGGCGATGATTCAAATCTGATATTGAGAGATTACTTAATATGCTTTTGAGTTTCGTTCTTCAGAATACACACTTTCTGTTACAATTTTTTTGGGTTTTTTCTTGTTTTTGAATTTTTATCTTAGGGAGTATACTTTGAGAGGCGAGAGCTTTGTAATGGTTTGCGTGACTATGTTGTGGTGATACTATCATATGGTATTTATTTAATTTGCTTGTATACAAAACTCAGCCAATTATCATCTTTCTTTCCTAAACAATTTGGACCATTTTTATTGAAGTTTATATTGGATTTGGAGTATCACATTGCCAAAGTTCAGGCGCTGTTGACGTTAAATAG
Protein sequence

>MS.gene08718.t1

MIRTQSLLSFSVTILVSLLYSTTTTLSELSPATAPVQPTLPAPTTPAAAPKPLVPSLPESPSDSTPDTAGTVDIVGILRKAKAYNVFIRLMKTTQLINQLNSQLLATKTGGLTILAPDDSAFSGLKAGFLNSLSDGQKLELLQFHVISDYVSSSNFDTLTNPVRTLAGAKPGKVELNVVSYGGSVNISTGEVNTTINGIIYTDKRLAIYKVGKVLLPMDFFSIAKAPGKAPSLAPEPSTDTAKAPKPDKDTSSDSSQGVYFERRELCNGLRDYVVVILSYVYIGFGVSHCQSSGAVDVK