Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08760.t1 | RHN42616.1 | 99.8 | 1117 | 2 | 0 | 1 | 1117 | 1 | 1117 | 0.00E+00 | 2080.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08760.t1 | Q8BKC5 | 35.1 | 1108 | 671 | 15 | 30 | 1117 | 17 | 1096 | 1.1e-177 | 625.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08760.t1 | A0A396GNB0 | 99.8 | 1117 | 2 | 0 | 1 | 1117 | 1 | 1117 | 0.0e+00 | 2080.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049180 | MS.gene08760 | 0.815734 | 7.94E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08760.t1 | MTR_8g085950 | 99.642 | 1117 | 4 | 0 | 1 | 1117 | 1 | 1117 | 0.0 | 2286 |
MS.gene08760.t1 | MTR_7g085820 | 79.874 | 1113 | 219 | 3 | 9 | 1117 | 7 | 1118 | 0.0 | 1804 |
MS.gene08760.t1 | MTR_2g006750 | 26.696 | 1120 | 712 | 33 | 24 | 1114 | 5 | 1044 | 2.99e-96 | 330 |
MS.gene08760.t1 | MTR_3g064980 | 24.771 | 1094 | 761 | 23 | 7 | 1086 | 68 | 1113 | 2.33e-77 | 277 |
MS.gene08760.t1 | MTR_3g064930 | 26.735 | 980 | 640 | 30 | 54 | 1012 | 110 | 1032 | 5.86e-75 | 269 |
MS.gene08760.t1 | MTR_3g064910 | 30.035 | 576 | 363 | 15 | 7 | 550 | 8 | 575 | 6.22e-59 | 218 |
MS.gene08760.t1 | MTR_3g064910 | 45.455 | 231 | 124 | 1 | 887 | 1117 | 533 | 761 | 5.89e-58 | 214 |
MS.gene08760.t1 | MTR_3g065010 | 25.427 | 936 | 572 | 28 | 7 | 908 | 76 | 919 | 2.33e-49 | 190 |
MS.gene08760.t1 | MTR_3g064940 | 24.259 | 911 | 612 | 24 | 27 | 908 | 64 | 925 | 3.28e-49 | 190 |
MS.gene08760.t1 | MTR_7g098920 | 50.806 | 124 | 27 | 3 | 892 | 1011 | 6 | 99 | 1.99e-26 | 106 |
MS.gene08760.t1 | MTR_3g064935 | 41.837 | 98 | 56 | 1 | 989 | 1086 | 38 | 134 | 1.54e-18 | 84.0 |
MS.gene08760.t1 | MTR_8g099855 | 34.667 | 150 | 80 | 3 | 938 | 1086 | 252 | 384 | 2.06e-18 | 89.4 |
MS.gene08760.t1 | MTR_8g099785 | 21.209 | 844 | 542 | 31 | 39 | 813 | 20 | 809 | 1.72e-15 | 82.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08760.t1 | AT5G19820 | 81.379 | 1117 | 207 | 1 | 1 | 1117 | 1 | 1116 | 0.0 | 1882 |
MS.gene08760.t1 | AT4G27640 | 25.275 | 1092 | 735 | 28 | 24 | 1094 | 5 | 1036 | 2.11e-87 | 305 |
Find 255 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCAAATACCGCTACTATTT+TGG | 0.031192 | 4.2:+12617362 | None:intergenic |
CAATTGTCCAATTGCATTAA+TGG | 0.133282 | 4.2:+12625104 | None:intergenic |
CCTCGTGGAAATAAAATTTA+AGG | 0.186312 | 4.2:+12620962 | None:intergenic |
TCATATGCCATTACATTATC+TGG | 0.189146 | 4.2:+12617834 | None:intergenic |
CTCGGTGTTTGTGCTGAGTT+TGG | 0.199189 | 4.2:-12618010 | MS.gene08760:CDS |
CTCAATCAAATCACCTTTAA+TGG | 0.208670 | 4.2:+12617541 | None:intergenic |
GGAACAATTACCTGCGTATT+TGG | 0.211478 | 4.2:-12625401 | MS.gene08760:CDS |
TGGACAATTGTCTACTGATT+TGG | 0.219251 | 4.2:-12625091 | MS.gene08760:CDS |
TGACAGCATCATAATATTTC+TGG | 0.220680 | 4.2:+12622626 | None:intergenic |
CTGTCGGAAAGGAGAAATTT+AGG | 0.230051 | 4.2:-12622507 | MS.gene08760:CDS |
GTTAGAAAAGCTGCCGTTTC+AGG | 0.232754 | 4.2:-12620937 | MS.gene08760:intron |
TTGGGAAGGTATTGATTGTT+TGG | 0.242619 | 4.2:+12617381 | None:intergenic |
CAAATTGCTTGTACTTCTTC+AGG | 0.252482 | 4.2:-12622920 | MS.gene08760:intron |
CGCCGATCGAGATAGGTTTC+AGG | 0.254493 | 4.2:-12625881 | MS.gene08760:CDS |
GGCTAGACTCTGCAAGTGTC+TGG | 0.264832 | 4.2:-12621722 | MS.gene08760:CDS |
CTATCAGGTGGGTGAGATAT+TGG | 0.277132 | 4.2:-12619218 | MS.gene08760:intron |
TCACCTGTACGCGGGGATTC+TGG | 0.279627 | 4.2:+12625001 | None:intergenic |
ACAGATCTCCGGGATGCTTT+TGG | 0.283742 | 4.2:-12619515 | MS.gene08760:intron |
GGATAGGTTATCGATATCTT+TGG | 0.294948 | 4.2:-12625452 | MS.gene08760:CDS |
TCGGTGTTTGTGCTGAGTTT+GGG | 0.303824 | 4.2:-12618009 | MS.gene08760:CDS |
TTCAGTAAATGAATGCTTAC+AGG | 0.307262 | 4.2:-12620317 | MS.gene08760:intron |
CTAACTATTCCATCCAAGTA+TGG | 0.308374 | 4.2:+12622943 | None:intergenic |
CTGACGGAGGCGTTGAATTC+AGG | 0.312922 | 4.2:-12625832 | MS.gene08760:CDS |
TATTCTGATGAAGATGCTTT+TGG | 0.313367 | 4.2:-12625566 | MS.gene08760:CDS |
AAGTATGGCGTTAAAATTTC+AGG | 0.313954 | 4.2:+12622958 | None:intergenic |
GGACAATTGTCTACTGATTT+GGG | 0.318866 | 4.2:-12625090 | MS.gene08760:CDS |
ATTGCGATCCTTCTCTCTTC+AGG | 0.323866 | 4.2:+12618357 | None:intergenic |
GCTCAATTGTCGCAGTATAT+TGG | 0.327463 | 4.2:-12626039 | MS.gene08760:CDS |
AATTCGGGCCAACCGTTATC+TGG | 0.330554 | 4.2:+12626132 | None:intergenic |
AACATAAACGGAAGCAATTC+GGG | 0.332416 | 4.2:+12626117 | None:intergenic |
CATGCTTCGTGCTAAGTCTA+TGG | 0.334668 | 4.2:-12622554 | MS.gene08760:CDS |
TCACGATCAACTTTGTTCTA+TGG | 0.339301 | 4.2:-12617507 | MS.gene08760:CDS |
TTGAACTGTCTGCCCATTAA+AGG | 0.352539 | 4.2:-12617554 | MS.gene08760:CDS |
GGCATGACAAATTCCATATA+AGG | 0.363015 | 4.2:+12621685 | None:intergenic |
TACAATTGTTCCTGTTGCTT+CGG | 0.363337 | 4.2:-12625422 | MS.gene08760:CDS |
TGGGAAGGTATTGATTGTTT+GGG | 0.363550 | 4.2:+12617382 | None:intergenic |
GATAGGTTATCGATATCTTT+GGG | 0.368820 | 4.2:-12625451 | MS.gene08760:CDS |
GCTGCATTTGCAGGTAGTTC+CGG | 0.371697 | 4.2:-12617582 | MS.gene08760:intron |
TACGTATCTTCCATTCTTGT+TGG | 0.374595 | 4.2:-12618183 | MS.gene08760:CDS |
TCTGTGTTCAAACCTCTTGT+TGG | 0.375892 | 4.2:-12617983 | MS.gene08760:CDS |
TGCAATGCTTCCACCAAAGC+TGG | 0.377656 | 4.2:+12620701 | None:intergenic |
TGCGGAGGCTGAGTCTTTAG+AGG | 0.379336 | 4.2:-12625698 | MS.gene08760:CDS |
TGGAATCAAGACTAGTGTTC+TGG | 0.380110 | 4.2:-12621191 | MS.gene08760:CDS |
AGAGGGAGCCTTGACTGCTT+TGG | 0.381283 | 4.2:-12622760 | MS.gene08760:CDS |
GTCTATGGAATGCATAAGTT+TGG | 0.383864 | 4.2:-12622539 | MS.gene08760:CDS |
TTTCTGCAGGCAGCGGTATA+CGG | 0.384330 | 4.2:-12618034 | MS.gene08760:intron |
TCCCAACTCGCGGCGATTCT+CGG | 0.388817 | 4.2:-12626510 | MS.gene08760:CDS |
AGCTTCAAAACGAGTGCGTC+TGG | 0.389041 | 4.2:+12626381 | None:intergenic |
AAACATAAACGGAAGCAATT+CGG | 0.390323 | 4.2:+12626116 | None:intergenic |
ACTCTCGGTGACAAAAGAAT+TGG | 0.392745 | 4.2:-12621211 | MS.gene08760:CDS |
CTTGCACAAATTTCTGTGTC+AGG | 0.397759 | 4.2:+12620349 | None:intergenic |
AGAGGAAGGGACTAGGCATT+TGG | 0.398444 | 4.2:-12625680 | MS.gene08760:CDS |
TATCAGGTGGGTGAGATATT+GGG | 0.402712 | 4.2:-12619217 | MS.gene08760:intron |
TTATCTGGATGAAGCGCATT+AGG | 0.403617 | 4.2:+12617849 | None:intergenic |
CTGGTTCCGCCGATCGAGAT+AGG | 0.405719 | 4.2:-12625888 | MS.gene08760:CDS |
AGGTCCGACAGCTCTCTCTT+AGG | 0.406373 | 4.2:-12617405 | MS.gene08760:CDS |
CGCCGAGAATCGCCGCGAGT+TGG | 0.410430 | 4.2:+12626508 | None:intergenic |
CATTGACCAATATAGCCTTC+AGG | 0.412023 | 4.2:+12622596 | None:intergenic |
TGATATTGAACTTGCAAATC+CGG | 0.412982 | 4.2:+12625066 | None:intergenic |
CAGCTGTTTGTTCTGTTGCA+AGG | 0.416156 | 4.2:+12616597 | None:intergenic |
CAATACTGTCCTGGTGAAAT+CGG | 0.417872 | 4.2:+12617781 | None:intergenic |
TAGCAGGCGGTAATGTTTGC+TGG | 0.418065 | 4.2:+12616546 | None:intergenic |
GCCGAGAATCGCCGCGAGTT+GGG | 0.420121 | 4.2:+12626509 | None:intergenic |
TGGGCAGCCATTAATGCAAT+TGG | 0.420671 | 4.2:-12625111 | MS.gene08760:CDS |
GCTTGAGTTGCTTATTGAAC+TGG | 0.422700 | 4.2:-12625785 | MS.gene08760:CDS |
AATAGTTGAAGAGGTAAAAC+AGG | 0.425292 | 4.2:-12619473 | MS.gene08760:CDS |
AGCATCAAAATCTTCAGCTT+GGG | 0.426942 | 4.2:+12619405 | None:intergenic |
TGACAATGCAGTTTCTGCTC+TGG | 0.428092 | 4.2:-12617814 | MS.gene08760:CDS |
AGATGCCGCAGTTTATTAGT+AGG | 0.433330 | 4.2:-12625597 | MS.gene08760:CDS |
ACCGTTATCTGGTAAAATAC+TGG | 0.435203 | 4.2:+12626143 | None:intergenic |
TCAATCAAATCACCTTTAAT+GGG | 0.436293 | 4.2:+12617542 | None:intergenic |
ACCGTACCTGAAGGCTATAT+TGG | 0.437750 | 4.2:-12622602 | MS.gene08760:CDS |
TAGTGTTGGACAGGAGTGTT+TGG | 0.441465 | 4.2:-12625473 | MS.gene08760:CDS |
CGCGTGATGATTCATTCCTC+TGG | 0.442926 | 4.2:-12626284 | MS.gene08760:CDS |
ATTCTTTCCATGGATTGATC+AGG | 0.444124 | 4.2:-12621110 | MS.gene08760:intron |
GCCAGCCCTAGCTGCTGCCA+TGG | 0.444572 | 4.2:-12625031 | MS.gene08760:CDS |
AAAGCAGCAATTCTGACATC+AGG | 0.445785 | 4.2:+12625943 | None:intergenic |
TGTCGGAAAGGAGAAATTTA+GGG | 0.446376 | 4.2:-12622506 | MS.gene08760:CDS |
GTGTTCAAACCTCTTGTTGG+AGG | 0.452256 | 4.2:-12617980 | MS.gene08760:intron |
CATCTTATTTGACTCCTATG+TGG | 0.455513 | 4.2:-12619141 | MS.gene08760:CDS |
GATGCAGGTTGCAGGAACTT+TGG | 0.456597 | 4.2:-12620992 | MS.gene08760:intron |
CAGCATCAAAATCTTCAGCT+TGG | 0.459418 | 4.2:+12619404 | None:intergenic |
GGCTTGAGAACGTTCTTCGT+TGG | 0.461472 | 4.2:+12626437 | None:intergenic |
CAGGTGGAAGCAAGGGTAGC+AGG | 0.463259 | 4.2:+12616530 | None:intergenic |
TTTGGATATTGAGGATGATC+CGG | 0.464010 | 4.2:-12625548 | MS.gene08760:CDS |
TTGAGATTGCCCTTTCTCAA+TGG | 0.464568 | 4.2:+12620769 | None:intergenic |
AGGCAGATTGTTGATGTTGT+TGG | 0.465494 | 4.2:-12625736 | MS.gene08760:CDS |
ATTTAGGGCTGATGCTAAGC+AGG | 0.466706 | 4.2:-12622491 | MS.gene08760:intron |
TGACAGTATCATCCCAGCTT+TGG | 0.467023 | 4.2:-12620714 | MS.gene08760:CDS |
CTGCTACCCTTGCTTCCACC+TGG | 0.467347 | 4.2:-12616529 | MS.gene08760:CDS |
ATTGTCTACTGATTTGGGTC+CGG | 0.467478 | 4.2:-12625085 | MS.gene08760:CDS |
GTATCTTCCATTCTTGTTGG+AGG | 0.470358 | 4.2:-12618180 | MS.gene08760:CDS |
AAGCGATTTGAGAGAAGCTT+GGG | 0.473464 | 4.2:+12626242 | None:intergenic |
ATGCTAACCTGTCTAACATC+TGG | 0.474453 | 4.2:+12618140 | None:intergenic |
TGAAAGAAGGATTCTTTCCA+TGG | 0.475708 | 4.2:-12621120 | MS.gene08760:CDS |
TGTAGCATGTAACTTGTTGT+TGG | 0.478385 | 4.2:+12621836 | None:intergenic |
GATGACAATTCTTCAAAGAA+AGG | 0.480654 | 4.2:+12619160 | None:intergenic |
AGAAATTTGTGCAAGTATGT+TGG | 0.481433 | 4.2:-12620341 | MS.gene08760:CDS |
TGATTACTCTTGCTGAAGCT+AGG | 0.483939 | 4.2:-12625645 | MS.gene08760:CDS |
GGTAATTGTTCCGAAGCAAC+AGG | 0.484612 | 4.2:+12625412 | None:intergenic |
ATCTTATTTGACTCCTATGT+GGG | 0.485888 | 4.2:-12619140 | MS.gene08760:intron |
GAAGCTAGGGAGCGTGCTCC+TGG | 0.485994 | 4.2:-12625631 | MS.gene08760:CDS |
GCAAAGTTAGCCATTGAGAA+AGG | 0.486249 | 4.2:-12620779 | MS.gene08760:CDS |
CTGATCAACATCCTCGTGTA+AGG | 0.486407 | 4.2:-12625134 | MS.gene08760:CDS |
GTCCTTGCAAGGATCACAAA+TGG | 0.486615 | 4.2:-12621870 | MS.gene08760:CDS |
GCAGAGGTTGAAGAGAGCTT+CGG | 0.487032 | 4.2:+12626416 | None:intergenic |
CAATATCTCTATAGCAATGC+CGG | 0.488186 | 4.2:-12620816 | MS.gene08760:intron |
GAAGCGATTTGAGAGAAGCT+TGG | 0.489764 | 4.2:+12626241 | None:intergenic |
GACTACCTTTGAGCTTCCCT+CGG | 0.492890 | 4.2:+12625324 | None:intergenic |
CAGGCAGCGGTATACGGCCT+CGG | 0.494617 | 4.2:-12618028 | MS.gene08760:CDS |
GAATCCTTCTTTCAACTCAT+CGG | 0.496573 | 4.2:+12621129 | None:intergenic |
TTGCAAGTTCAATATCATCA+AGG | 0.497804 | 4.2:-12625060 | MS.gene08760:CDS |
TTTAGAGCAAGTGGTGGCTA+TGG | 0.499528 | 4.2:-12625172 | MS.gene08760:CDS |
TTACATGCCTCCAACAAGAA+TGG | 0.499838 | 4.2:+12618173 | None:intergenic |
GTCTGAGTAAACTAACCATT+CGG | 0.499941 | 4.2:+12616573 | None:intergenic |
ATCAGTTGCTGATTCATCTC+AGG | 0.501257 | 4.2:-12622736 | MS.gene08760:intron |
ATCATCCATGGCAGCAGCTA+GGG | 0.501960 | 4.2:+12625026 | None:intergenic |
ATTTCAGAATGGTAAACAAA+TGG | 0.503330 | 4.2:-12622787 | MS.gene08760:intron |
CAGTATCATCCCAGCTTTGG+TGG | 0.504748 | 4.2:-12620711 | MS.gene08760:CDS |
ATGGAATGCATAAGTTTGGT+TGG | 0.505162 | 4.2:-12622535 | MS.gene08760:CDS |
TCCATGGCAGCAGCTAGGGC+TGG | 0.505867 | 4.2:+12625030 | None:intergenic |
TTTGGTGGAAGCATTGCATA+AGG | 0.506410 | 4.2:-12620696 | MS.gene08760:intron |
ACTATGCAAACTATGAAGAA+AGG | 0.510590 | 4.2:+12616465 | None:intergenic |
GCTAGACTCTGCAAGTGTCT+GGG | 0.510865 | 4.2:-12621721 | MS.gene08760:CDS |
GACAATGCAGTTTCTGCTCT+GGG | 0.511023 | 4.2:-12617813 | MS.gene08760:CDS |
CGGTGTTTGTGCTGAGTTTG+GGG | 0.513048 | 4.2:-12618008 | MS.gene08760:CDS |
TTTGAGAGAAGCTTGGGTGT+TGG | 0.513935 | 4.2:+12626248 | None:intergenic |
CATTAAAGGTGATTTGATTG+AGG | 0.514731 | 4.2:-12617540 | MS.gene08760:CDS |
GATGAAGCGCATTAGGATGT+TGG | 0.515875 | 4.2:+12617856 | None:intergenic |
CTGGATCGGTTTGTTTGCAG+AGG | 0.518770 | 4.2:+12626400 | None:intergenic |
TATGCCGATGAGTTGAAAGA+AGG | 0.518825 | 4.2:-12621133 | MS.gene08760:CDS |
AACAACAAGTTACATGCTAC+AGG | 0.519395 | 4.2:-12621834 | MS.gene08760:intron |
ACCTGCGTATTTGGCTGCAC+CGG | 0.521180 | 4.2:-12625392 | MS.gene08760:CDS |
AGTCTTTAGAGGAAGGGACT+AGG | 0.521662 | 4.2:-12625687 | MS.gene08760:CDS |
CTTACACGAGGATGTTGATC+AGG | 0.522287 | 4.2:+12625135 | None:intergenic |
CAAAACGAGTGCGTCTGGAT+CGG | 0.522767 | 4.2:+12626386 | None:intergenic |
GAAAGGGCAATCTCAAGGTC+GGG | 0.523223 | 4.2:-12620762 | MS.gene08760:CDS |
GAAACGCACTGAAACATAAA+CGG | 0.523550 | 4.2:+12626105 | None:intergenic |
GATCATTCTCATACCTGAAA+CGG | 0.524594 | 4.2:+12620924 | None:intergenic |
TTTCCAGAATCCCCGCGTAC+AGG | 0.525098 | 4.2:-12625004 | MS.gene08760:intron |
TTGAGAACGTTCTTCGTTGG+TGG | 0.527614 | 4.2:+12626440 | None:intergenic |
CTCCATTTGTGATCCTTGCA+AGG | 0.529100 | 4.2:+12621868 | None:intergenic |
ATCAGAGTCTCAAACGGTGA+TGG | 0.529863 | 4.2:+12626480 | None:intergenic |
TAGCAACTATAGTGTTGGAC+AGG | 0.533245 | 4.2:-12625482 | MS.gene08760:CDS |
AATCATCCATGGCAGCAGCT+AGG | 0.533390 | 4.2:+12625025 | None:intergenic |
AACTGATGCCAAAGCAGTCA+AGG | 0.535384 | 4.2:+12622752 | None:intergenic |
TGCAAGTTCAATATCATCAA+GGG | 0.542378 | 4.2:-12625059 | MS.gene08760:CDS |
CAAAGTTAGCCATTGAGAAA+GGG | 0.544023 | 4.2:-12620778 | MS.gene08760:CDS |
GGGCAGAGTCAATACTGTCC+TGG | 0.546727 | 4.2:+12617772 | None:intergenic |
GATTACTCTTGCTGAAGCTA+GGG | 0.546767 | 4.2:-12625644 | MS.gene08760:CDS |
GATAGCCGAGGGAAGCTCAA+AGG | 0.547363 | 4.2:-12625329 | MS.gene08760:intron |
GGTCAAGTCAATAGTTGAAG+AGG | 0.548828 | 4.2:-12619482 | MS.gene08760:CDS |
GGCAGACAGTTCAACCATGC+CGG | 0.549952 | 4.2:+12617563 | None:intergenic |
TGAAACTCCAGATGTTAGAC+AGG | 0.551089 | 4.2:-12618147 | MS.gene08760:intron |
TGCAAACTATGAAGAAAGGA+TGG | 0.552426 | 4.2:+12616469 | None:intergenic |
ATCAACATCCTCGTGTAAGG+TGG | 0.552996 | 4.2:-12625131 | MS.gene08760:CDS |
TGGAAATAAAATTTAAGGAG+TGG | 0.553423 | 4.2:+12620967 | None:intergenic |
TTGGACAGGAGTGTTTGGAT+AGG | 0.553440 | 4.2:-12625468 | MS.gene08760:CDS |
GTCAGCGTCGTCATCATCGC+AGG | 0.556570 | 4.2:+12625850 | None:intergenic |
TTTGCAGATCGTAATAGCTC+CGG | 0.557132 | 4.2:+12620797 | None:intergenic |
AGTCTCAAACGGTGATGGAT+CGG | 0.558898 | 4.2:+12626485 | None:intergenic |
ATGCATAAGTTTGGTTGGAA+TGG | 0.560001 | 4.2:-12622530 | MS.gene08760:CDS |
CGATCAACTTTGTTCTATGG+CGG | 0.561251 | 4.2:-12617504 | MS.gene08760:CDS |
GGCATCTTCCTCATCATACC+AGG | 0.561763 | 4.2:+12625613 | None:intergenic |
GTATCCGCAGTGTGCCATGC+CGG | 0.562718 | 4.2:+12625529 | None:intergenic |
GAATCTAGCAACTATAGTGT+TGG | 0.562795 | 4.2:-12625487 | MS.gene08760:CDS |
AAGATGACCAGGTGGAAGCA+AGG | 0.562842 | 4.2:+12616522 | None:intergenic |
AGAAAGGGCAATCTCAAGGT+CGG | 0.564082 | 4.2:-12620763 | MS.gene08760:CDS |
GAAGTTCTTATGTCCTTGCA+AGG | 0.564320 | 4.2:-12621881 | MS.gene08760:CDS |
GAGGCTGAGTCTTTAGAGGA+AGG | 0.565506 | 4.2:-12625694 | MS.gene08760:CDS |
TTGTTGTAACTGAGTTGACT+CGG | 0.565843 | 4.2:+12626533 | None:intergenic |
AACTGGCGGGGACTGAGCCA+AGG | 0.566110 | 4.2:-12625768 | MS.gene08760:CDS |
GCAGATGTGATGGTAACGTC+AGG | 0.566720 | 4.2:+12621634 | None:intergenic |
TCAAGAGGCAACTGCTCAAG+AGG | 0.566933 | 4.2:-12625809 | MS.gene08760:CDS |
GGTTGGAATGGCTGTCGGAA+AGG | 0.567317 | 4.2:-12622518 | MS.gene08760:CDS |
TTCTTCAAAGAAAGGCAAGA+AGG | 0.569138 | 4.2:+12619168 | None:intergenic |
CACTGCGGATACTGAGGATG+AGG | 0.569817 | 4.2:-12625518 | MS.gene08760:CDS |
TAGATGATTCTGATGATGAA+AGG | 0.572299 | 4.2:-12621594 | MS.gene08760:intron |
ATTTGCAGGTAGTTCCGGCA+TGG | 0.573214 | 4.2:-12617577 | MS.gene08760:intron |
GATACTGAGGATGAGGATGC+TGG | 0.574068 | 4.2:-12625511 | MS.gene08760:CDS |
AGTCTAACCTGATCAATCCA+TGG | 0.574932 | 4.2:+12621103 | None:intergenic |
TGGTGCAATGCTTCAGATTG+CGG | 0.578390 | 4.2:-12625716 | MS.gene08760:CDS |
GGCGTTGAATTCAGGTCAAG+AGG | 0.580191 | 4.2:-12625824 | MS.gene08760:CDS |
AGATGACCAGGTGGAAGCAA+GGG | 0.581291 | 4.2:+12616523 | None:intergenic |
GATTAAAGAGGAAAACGAGC+AGG | 0.581297 | 4.2:-12619368 | MS.gene08760:CDS |
AGTTTGGTTGGAATGGCTGT+CGG | 0.582073 | 4.2:-12622523 | MS.gene08760:CDS |
ACCAATATAGCCTTCAGGTA+CGG | 0.584658 | 4.2:+12622601 | None:intergenic |
AGGAAAGGTCACCTGTACGC+GGG | 0.585014 | 4.2:+12624993 | None:intergenic |
TGGTAAACAAATGGTGCAAG+AGG | 0.585953 | 4.2:-12622778 | MS.gene08760:CDS |
ACGAGGATGTTGATCAGGAA+AGG | 0.589437 | 4.2:+12625140 | None:intergenic |
TGAGTTGCTTATTGAACTGG+CGG | 0.591035 | 4.2:-12625782 | MS.gene08760:CDS |
GCAATGCTTCCACCAAAGCT+GGG | 0.591321 | 4.2:+12620702 | None:intergenic |
CTAGACTCTGCAAGTGTCTG+GGG | 0.591446 | 4.2:-12621720 | MS.gene08760:CDS |
AGTTGCTTATTGAACTGGCG+GGG | 0.591635 | 4.2:-12625780 | MS.gene08760:CDS |
AGTGAAACAGACTGAAGCAA+TGG | 0.596482 | 4.2:+12621661 | None:intergenic |
GCTTCATCCAGATAATGTAA+TGG | 0.597429 | 4.2:-12617841 | MS.gene08760:CDS |
TTGCGGCTGCAAAGATGACC+AGG | 0.597788 | 4.2:+12616511 | None:intergenic |
GAAACAGACTGAAGCAATGG+TGG | 0.599003 | 4.2:+12621664 | None:intergenic |
ATTGAGAAAGGGCAATCTCA+AGG | 0.599282 | 4.2:-12620767 | MS.gene08760:CDS |
TGTTGTAACTGAGTTGACTC+GGG | 0.599478 | 4.2:+12626534 | None:intergenic |
ACAAGACTCCTGAAGAGAGA+AGG | 0.600764 | 4.2:-12618365 | MS.gene08760:CDS |
TGTGAGATCAGAGTCTCAAA+CGG | 0.602992 | 4.2:+12626474 | None:intergenic |
AGGCTGAGTCTTTAGAGGAA+GGG | 0.607000 | 4.2:-12625693 | MS.gene08760:CDS |
CTTGCAACAGAACAAACAGC+TGG | 0.607654 | 4.2:-12616596 | MS.gene08760:CDS |
AACTTTGTTCTATGGCGGAG+AGG | 0.608912 | 4.2:-12617499 | MS.gene08760:intron |
GGGATTCTGGAAATCATCCA+TGG | 0.611070 | 4.2:+12625014 | None:intergenic |
GGACAGTATTGACTCTGCCC+AGG | 0.611934 | 4.2:-12617769 | MS.gene08760:intron |
CGTATTTGGCTGCACCGGAG+TGG | 0.613438 | 4.2:-12625387 | MS.gene08760:CDS |
AGTATGGAAACTATCACTCT+CGG | 0.613971 | 4.2:-12621226 | MS.gene08760:CDS |
ATCCTGAAACCTATCTCGAT+CGG | 0.616506 | 4.2:+12625879 | None:intergenic |
TAAGCAGTACCTCCAACAAG+AGG | 0.616877 | 4.2:+12617971 | None:intergenic |
TGCGATGATGACGACGCTGA+CGG | 0.617661 | 4.2:-12625848 | MS.gene08760:CDS |
AGAACAAACAGCTGGCCGAA+TGG | 0.617898 | 4.2:-12616588 | MS.gene08760:CDS |
GTCTGAATCAGCAGATGTGA+TGG | 0.620767 | 4.2:+12621624 | None:intergenic |
TGGGCCTAAGAGAGAGCTGT+CGG | 0.625244 | 4.2:+12617401 | None:intergenic |
TCAACATCCTCGTGTAAGGT+GGG | 0.625966 | 4.2:-12625130 | MS.gene08760:CDS |
AATAGTAGCGGTATTTGCAG+AGG | 0.628250 | 4.2:-12617358 | MS.gene08760:intron |
GAGTTGCTTATTGAACTGGC+GGG | 0.630138 | 4.2:-12625781 | MS.gene08760:CDS |
AATCAAGACTAGTGTTCTGG+AGG | 0.630386 | 4.2:-12621188 | MS.gene08760:CDS |
CAAGCGCAATCAATGCAGCA+TGG | 0.631444 | 4.2:+12625356 | None:intergenic |
TGCGCTTGCTCAGATAGCCG+AGG | 0.633942 | 4.2:-12625341 | MS.gene08760:CDS |
ATGGCACACTGCGGATACTG+AGG | 0.639017 | 4.2:-12625524 | MS.gene08760:CDS |
TCCGGTGCAGCCAAATACGC+AGG | 0.640135 | 4.2:+12625391 | None:intergenic |
TGCTGTCATACCGTACCTGA+AGG | 0.640419 | 4.2:-12622611 | MS.gene08760:CDS |
TAAAGAGGAAAACGAGCAGG+AGG | 0.642022 | 4.2:-12619365 | MS.gene08760:CDS |
GCAAGTTCAATATCATCAAG+GGG | 0.642471 | 4.2:-12625058 | MS.gene08760:CDS |
GCGCTTGCTCAGATAGCCGA+GGG | 0.646139 | 4.2:-12625340 | MS.gene08760:CDS |
CTGGACGAACATACCCACAT+AGG | 0.647072 | 4.2:+12619127 | None:intergenic |
AGCGTGCTCCTGGTATGATG+AGG | 0.647250 | 4.2:-12625621 | MS.gene08760:CDS |
ATAGCACGAGCTTCTTGATG+AGG | 0.650205 | 4.2:+12626336 | None:intergenic |
CTGAAACCTATCTCGATCGG+CGG | 0.652721 | 4.2:+12625882 | None:intergenic |
TCATGAAGGTGTTTGATATG+CGG | 0.655511 | 4.2:+12626003 | None:intergenic |
AAGGAAAGGTCACCTGTACG+CGG | 0.659871 | 4.2:+12624992 | None:intergenic |
TGCAATGCTTCAGATTGCGG+AGG | 0.663015 | 4.2:-12625713 | MS.gene08760:CDS |
TAGACTTAGCACGAAGCATG+CGG | 0.663457 | 4.2:+12622557 | None:intergenic |
GGTAAACAAATGGTGCAAGA+GGG | 0.663711 | 4.2:-12622777 | MS.gene08760:CDS |
GGAAAGGTCACCTGTACGCG+GGG | 0.667372 | 4.2:+12624994 | None:intergenic |
GTTGCAGAGCAGTGTCGTGA+AGG | 0.667612 | 4.2:-12618318 | MS.gene08760:CDS |
AGGTTATCGATATCTTTGGG+AGG | 0.678521 | 4.2:-12625448 | MS.gene08760:CDS |
TTGCTTTCGAAGAAGAATAG+CGG | 0.683007 | 4.2:+12626311 | None:intergenic |
ATACCTTCCCAAAATAGTAG+CGG | 0.684508 | 4.2:-12617370 | MS.gene08760:CDS |
GGTGTTTGTGCTGAGTTTGG+GGG | 0.689686 | 4.2:-12618007 | MS.gene08760:CDS |
TGTAAAGCAAGCTGTTGTTG+CGG | 0.689701 | 4.2:+12616494 | None:intergenic |
ATATTGAGGATGATCCGGCA+TGG | 0.693948 | 4.2:-12625543 | MS.gene08760:CDS |
GATGATGACGACGCTGACGG+AGG | 0.697442 | 4.2:-12625845 | MS.gene08760:CDS |
TGGACGAAAGACGAGGCCAG+AGG | 0.697746 | 4.2:+12626268 | None:intergenic |
CAAACTCAGCACAAACACCG+AGG | 0.699327 | 4.2:+12618011 | None:intergenic |
AACAACCTACTAATAAACTG+CGG | 0.712474 | 4.2:+12625592 | None:intergenic |
GTTACAACAATCCCAACTCG+CGG | 0.720105 | 4.2:-12626520 | MS.gene08760:CDS |
GTGGAAGCAAGGGTAGCAGG+CGG | 0.721019 | 4.2:+12616533 | None:intergenic |
CGGCTGCAAAGATGACCAGG+TGG | 0.721639 | 4.2:+12616514 | None:intergenic |
CTTATGCAGAGGCTCTATCG+AGG | 0.722154 | 4.2:-12617893 | MS.gene08760:intron |
ATGGCTGCCCACCTTACACG+AGG | 0.728704 | 4.2:+12625123 | None:intergenic |
TGGGTGTTGGACGAAAGACG+AGG | 0.753231 | 4.2:+12626261 | None:intergenic |
TGATCCGGCATGGCACACTG+CGG | 0.761351 | 4.2:-12625533 | MS.gene08760:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 12616475 | 12626562 | 12616475 | ID=MS.gene08760 |
chr4.2 | mRNA | 12616475 | 12626562 | 12616475 | ID=MS.gene08760.t1;Parent=MS.gene08760 |
chr4.2 | exon | 12625330 | 12626562 | 12625330 | ID=MS.gene08760.t1.exon1;Parent=MS.gene08760.t1 |
chr4.2 | CDS | 12625330 | 12626562 | 12625330 | ID=cds.MS.gene08760.t1;Parent=MS.gene08760.t1 |
chr4.2 | exon | 12625005 | 12625208 | 12625005 | ID=MS.gene08760.t1.exon2;Parent=MS.gene08760.t1 |
chr4.2 | CDS | 12625005 | 12625208 | 12625005 | ID=cds.MS.gene08760.t1;Parent=MS.gene08760.t1 |
chr4.2 | exon | 12622921 | 12623025 | 12622921 | ID=MS.gene08760.t1.exon3;Parent=MS.gene08760.t1 |
chr4.2 | CDS | 12622921 | 12623025 | 12622921 | ID=cds.MS.gene08760.t1;Parent=MS.gene08760.t1 |
chr4.2 | exon | 12622737 | 12622802 | 12622737 | ID=MS.gene08760.t1.exon4;Parent=MS.gene08760.t1 |
chr4.2 | CDS | 12622737 | 12622802 | 12622737 | ID=cds.MS.gene08760.t1;Parent=MS.gene08760.t1 |
chr4.2 | exon | 12622492 | 12622656 | 12622492 | ID=MS.gene08760.t1.exon5;Parent=MS.gene08760.t1 |
chr4.2 | CDS | 12622492 | 12622656 | 12622492 | ID=cds.MS.gene08760.t1;Parent=MS.gene08760.t1 |
chr4.2 | exon | 12621835 | 12621909 | 12621835 | ID=MS.gene08760.t1.exon6;Parent=MS.gene08760.t1 |
chr4.2 | CDS | 12621835 | 12621909 | 12621835 | ID=cds.MS.gene08760.t1;Parent=MS.gene08760.t1 |
chr4.2 | exon | 12621595 | 12621749 | 12621595 | ID=MS.gene08760.t1.exon7;Parent=MS.gene08760.t1 |
chr4.2 | CDS | 12621595 | 12621749 | 12621595 | ID=cds.MS.gene08760.t1;Parent=MS.gene08760.t1 |
chr4.2 | exon | 12621111 | 12621246 | 12621111 | ID=MS.gene08760.t1.exon8;Parent=MS.gene08760.t1 |
chr4.2 | CDS | 12621111 | 12621246 | 12621111 | ID=cds.MS.gene08760.t1;Parent=MS.gene08760.t1 |
chr4.2 | exon | 12620938 | 12621007 | 12620938 | ID=MS.gene08760.t1.exon9;Parent=MS.gene08760.t1 |
chr4.2 | CDS | 12620938 | 12621007 | 12620938 | ID=cds.MS.gene08760.t1;Parent=MS.gene08760.t1 |
chr4.2 | exon | 12620697 | 12620824 | 12620697 | ID=MS.gene08760.t1.exon10;Parent=MS.gene08760.t1 |
chr4.2 | CDS | 12620697 | 12620824 | 12620697 | ID=cds.MS.gene08760.t1;Parent=MS.gene08760.t1 |
chr4.2 | exon | 12620318 | 12620374 | 12620318 | ID=MS.gene08760.t1.exon11;Parent=MS.gene08760.t1 |
chr4.2 | CDS | 12620318 | 12620374 | 12620318 | ID=cds.MS.gene08760.t1;Parent=MS.gene08760.t1 |
chr4.2 | exon | 12619348 | 12619533 | 12619348 | ID=MS.gene08760.t1.exon12;Parent=MS.gene08760.t1 |
chr4.2 | CDS | 12619348 | 12619533 | 12619348 | ID=cds.MS.gene08760.t1;Parent=MS.gene08760.t1 |
chr4.2 | exon | 12619141 | 12619233 | 12619141 | ID=MS.gene08760.t1.exon13;Parent=MS.gene08760.t1 |
chr4.2 | CDS | 12619141 | 12619233 | 12619141 | ID=cds.MS.gene08760.t1;Parent=MS.gene08760.t1 |
chr4.2 | exon | 12618309 | 12618394 | 12618309 | ID=MS.gene08760.t1.exon14;Parent=MS.gene08760.t1 |
chr4.2 | CDS | 12618309 | 12618394 | 12618309 | ID=cds.MS.gene08760.t1;Parent=MS.gene08760.t1 |
chr4.2 | exon | 12618148 | 12618214 | 12618148 | ID=MS.gene08760.t1.exon15;Parent=MS.gene08760.t1 |
chr4.2 | CDS | 12618148 | 12618214 | 12618148 | ID=cds.MS.gene08760.t1;Parent=MS.gene08760.t1 |
chr4.2 | exon | 12617981 | 12618047 | 12617981 | ID=MS.gene08760.t1.exon16;Parent=MS.gene08760.t1 |
chr4.2 | CDS | 12617981 | 12618047 | 12617981 | ID=cds.MS.gene08760.t1;Parent=MS.gene08760.t1 |
chr4.2 | exon | 12617770 | 12617906 | 12617770 | ID=MS.gene08760.t1.exon17;Parent=MS.gene08760.t1 |
chr4.2 | CDS | 12617770 | 12617906 | 12617770 | ID=cds.MS.gene08760.t1;Parent=MS.gene08760.t1 |
chr4.2 | exon | 12617500 | 12617591 | 12617500 | ID=MS.gene08760.t1.exon18;Parent=MS.gene08760.t1 |
chr4.2 | CDS | 12617500 | 12617591 | 12617500 | ID=cds.MS.gene08760.t1;Parent=MS.gene08760.t1 |
chr4.2 | exon | 12617359 | 12617425 | 12617359 | ID=MS.gene08760.t1.exon19;Parent=MS.gene08760.t1 |
chr4.2 | CDS | 12617359 | 12617425 | 12617359 | ID=cds.MS.gene08760.t1;Parent=MS.gene08760.t1 |
chr4.2 | exon | 12616475 | 12616639 | 12616475 | ID=MS.gene08760.t1.exon20;Parent=MS.gene08760.t1 |
chr4.2 | CDS | 12616475 | 12616639 | 12616475 | ID=cds.MS.gene08760.t1;Parent=MS.gene08760.t1 |
Gene Sequence |
Protein sequence |