AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene08804

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08804.t1 MTR_3g083910 92.683 369 27 0 1 369 20 388 0.0 719
MS.gene08804.t1 MTR_3g083920 90.786 369 34 0 1 369 20 388 0.0 708
MS.gene08804.t1 MTR_7g016700 88.108 370 44 0 1 370 20 389 0.0 698
MS.gene08804.t1 MTR_5g007730 87.838 370 45 0 1 370 20 389 0.0 698
MS.gene08804.t1 MTR_1g098140 87.838 370 45 0 1 370 20 389 0.0 697
MS.gene08804.t1 MTR_7g016800 87.838 370 45 0 1 370 20 389 0.0 696
MS.gene08804.t1 MTR_5g007713 87.568 370 46 0 1 370 20 389 0.0 696
MS.gene08804.t1 MTR_7g016720 87.838 370 45 0 1 370 20 389 0.0 695
MS.gene08804.t1 MTR_7g016820 87.568 370 46 0 1 370 20 389 0.0 694
MS.gene08804.t1 MTR_5g007760 87.297 370 47 0 1 370 20 389 0.0 694
MS.gene08804.t1 MTR_1g097935 87.568 370 46 0 1 370 20 389 0.0 694
MS.gene08804.t1 MTR_1g097910 87.297 370 47 0 1 370 20 389 0.0 693
MS.gene08804.t1 MTR_5g007717 86.757 370 49 0 1 370 20 389 0.0 692
MS.gene08804.t1 MTR_7g016780 87.297 370 47 0 1 370 20 389 0.0 692
MS.gene08804.t1 MTR_7g084300 85.135 370 55 0 1 370 20 389 0.0 667
MS.gene08804.t1 MTR_2g058470 82.432 370 65 0 1 370 20 389 0.0 658
MS.gene08804.t1 MTR_3g086260 82.114 369 66 0 1 369 20 388 0.0 640
MS.gene08804.t1 MTR_3g088675 72.162 370 103 0 1 370 20 389 0.0 579
MS.gene08804.t1 MTR_7g113405 88.119 303 36 0 68 370 1 303 0.0 560
MS.gene08804.t1 MTR_5g007740 78.221 326 71 0 45 370 1 326 0.0 535
MS.gene08804.t1 MTR_5g007723 65.217 391 83 5 1 370 40 398 3.29e-179 503
MS.gene08804.t1 MTR_5g007770 74.000 300 45 2 51 350 1 267 1.02e-160 451
MS.gene08804.t1 MTR_3g088670 49.737 380 177 7 1 369 12 388 6.66e-130 378
MS.gene08804.t1 MTR_4g075560 43.396 371 203 4 1 368 22 388 2.35e-102 307
MS.gene08804.t1 MTR_4g078730 39.402 368 216 2 1 368 29 389 9.90e-98 296
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08804.t1 AT5G13930 84.824 369 55 1 1 368 25 393 0.0 654
MS.gene08804.t1 AT4G34850 41.398 372 214 3 1 370 23 392 2.36e-98 297
MS.gene08804.t1 AT4G00040 41.509 371 207 5 1 368 22 385 1.25e-96 293
MS.gene08804.t1 AT1G02050 41.081 370 210 4 1 368 29 392 1.67e-88 272
MS.gene08804.t1 AT4G34850 42.188 320 182 2 53 370 1 319 5.92e-86 263
MS.gene08804.t1 AT3G52160 29.388 245 149 11 131 368 97 324 1.04e-12 68.9
MS.gene08804.t1 AT3G52160 29.388 245 149 11 131 368 210 437 2.36e-12 68.6

Find 97 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAAATGTGTTGAGTAATTA+TGG 0.159032 4.2:-13023141 MS.gene08804:CDS
AGATATACCCAAAGGTTTAA+AGG 0.245773 4.2:+13023266 None:intergenic
TGTGGCTAGTCCATTGTCTT+TGG 0.261386 4.2:+13023065 None:intergenic
CTGATTATAACTCAATCTTT+TGG 0.272111 4.2:-13023245 MS.gene08804:CDS
TGGGGTGTGTTGTTTGGTTT+TGG 0.276522 4.2:-13023024 MS.gene08804:CDS
CTTGAATGGGGTGTGTTGTT+TGG 0.296451 4.2:-13023030 MS.gene08804:CDS
GGTTGAAGCCTTTAAACCTT+TGG 0.319052 4.2:-13023274 MS.gene08804:CDS
GTTGAAGCCTTTAAACCTTT+GGG 0.337605 4.2:-13023273 MS.gene08804:CDS
TCAATAGCTCCTTCACTATC+AGG 0.344839 4.2:+13023381 None:intergenic
TGCCATGTAAGCACACATAT+TGG 0.349143 4.2:+13023881 None:intergenic
TCTTCGTTTGGCTAAAGATT+TGG 0.349738 4.2:-13023613 MS.gene08804:CDS
CTTGTGGGACAAGCCTTGTT+TGG 0.358463 4.2:-13023498 MS.gene08804:CDS
CCTGCCACTGTCATGGCAAT+TGG 0.376106 4.2:-13024196 None:intergenic
AGATGAGTGATCTTGGACTT+TGG 0.383652 4.2:+13023765 None:intergenic
ACGAGCACCTTTATTGTTCT+CGG 0.386732 4.2:+13023590 None:intergenic
CTTCGTAGTGTTGCTGTTTG+AGG 0.394685 4.2:-13022973 None:intergenic
GGCACTCTGATCAACACAAT+TGG 0.400045 4.2:+13024159 None:intergenic
GTCAAGAATCGCTGGTCCAC+CGG 0.403855 4.2:+13023212 None:intergenic
TGGTGGTACGGTTCTTCGTT+TGG 0.404129 4.2:-13023625 MS.gene08804:CDS
CAACTGGTGAAGGGCTTGAA+TGG 0.407695 4.2:-13023044 MS.gene08804:CDS
AACTGGTGAAGGGCTTGAAT+GGG 0.413901 4.2:-13023043 MS.gene08804:CDS
AACAAAAGCGATCAAGGAAT+GGG 0.414224 4.2:-13023793 MS.gene08804:CDS
GTAACACGAAAGTAGTAATC+AGG 0.426197 4.2:+13024133 None:intergenic
TGCTTACATGGCACCATCAT+TGG 0.429205 4.2:-13023871 MS.gene08804:CDS
GCCATGTAAGCACACATATT+GGG 0.431280 4.2:+13023882 None:intergenic
GACCAAGTTGAGGACAAGTT+AGG 0.432585 4.2:-13023192 MS.gene08804:CDS
AAAGATGAGATGAGTGATCT+TGG 0.440160 4.2:+13023758 None:intergenic
GACAATGGACTAGCCACAAC+TGG 0.454448 4.2:-13023060 MS.gene08804:CDS
TCCCAATATGTGTGCTTACA+TGG 0.455956 4.2:-13023883 MS.gene08804:CDS
GGTCTCTCAACCTCAGGTAA+TGG 0.456340 4.2:+13023441 None:intergenic
GATTTGGCCGAGAACAATAA+AGG 0.458828 4.2:-13023597 MS.gene08804:CDS
CACCAGCAAAACACCCTTGT+TGG 0.461998 4.2:+13023643 None:intergenic
CATCTTCTCAAGGATGTGCC+TGG 0.465539 4.2:-13023327 MS.gene08804:CDS
TCAAGAATCGCTGGTCCACC+GGG 0.466810 4.2:+13023213 None:intergenic
GAAATGTGTTGAGTAATTAT+GGG 0.467565 4.2:-13023140 MS.gene08804:CDS
ATATTCTTTGAGATAAGTCC+AGG 0.468877 4.2:+13023309 None:intergenic
AAAGAATATCGAAAAGGCCT+TGG 0.477216 4.2:-13023295 MS.gene08804:CDS
AGCAGCAACAAAAGCGATCA+AGG 0.478551 4.2:-13023799 MS.gene08804:CDS
CAGGCACATCCTTGAGAAGA+TGG 0.483610 4.2:+13023328 None:intergenic
ACCCATCTTGATAGTCTTGT+GGG 0.484612 4.2:-13023513 MS.gene08804:CDS
GATAGTGAAGGAGCTATTGA+TGG 0.490775 4.2:-13023378 MS.gene08804:CDS
TTCAAGCCCTTCACCAGTTG+TGG 0.497493 4.2:+13023047 None:intergenic
AACCTAACTTGTCCTCAACT+TGG 0.500607 4.2:+13023190 None:intergenic
CAACAAAAGCGATCAAGGAA+TGG 0.503536 4.2:-13023794 MS.gene08804:CDS
GGCGCTGCTGCTGTGATCGT+TGG 0.504753 4.2:-13023471 MS.gene08804:CDS
ATCACTGCAGTCACATTTCG+TGG 0.507660 4.2:-13023546 MS.gene08804:CDS
AACAAAGGTCTCTCAACCTC+AGG 0.508792 4.2:+13023435 None:intergenic
GTAGCAGAGGTACCAAGGTT+AGG 0.512293 4.2:-13023828 MS.gene08804:CDS
GCACTCTGATCAACACAATT+GGG 0.516829 4.2:+13024160 None:intergenic
CTATCAAGATGGGTGTCACT+AGG 0.518069 4.2:+13023522 None:intergenic
GACCTTTGTTTGAGTTAGTG+TGG 0.519425 4.2:-13023422 MS.gene08804:CDS
TATCTCAAAGAATATCGAAA+AGG 0.521856 4.2:-13023301 MS.gene08804:CDS
GGACTAGCCACAACTGGTGA+AGG 0.523410 4.2:-13023054 MS.gene08804:CDS
TCAACTTGGTCAAGAATCGC+TGG 0.535204 4.2:+13023204 None:intergenic
TATCAGCTCACAAAATTGCT+AGG 0.538946 4.2:-13023699 MS.gene08804:CDS
TCTTGCCTTGCATCCAATGA+TGG 0.539914 4.2:+13023858 None:intergenic
AGGTTTAAAGGCTTCAACCA+AGG 0.540344 4.2:+13023278 None:intergenic
GTCCCACAAGACTATCAAGA+TGG 0.540528 4.2:+13023511 None:intergenic
TAAAGGTGCTCGTGTTCTTG+TGG 0.544940 4.2:-13023580 MS.gene08804:CDS
GATGGTCACCTTCGCGAGGT+TGG 0.549915 4.2:-13023360 MS.gene08804:CDS
ACAGTCTCAACAGTAAGTCC+AGG 0.551294 4.2:+13023000 None:intergenic
CACCCATCTTGATAGTCTTG+TGG 0.559465 4.2:-13023514 MS.gene08804:CDS
GGACAAGCCTTGTTTGGAGA+TGG 0.567510 4.2:-13023492 MS.gene08804:CDS
CGTTATATGATGTACCAACA+AGG 0.574165 4.2:-13023657 MS.gene08804:CDS
ATCATATAACGTTTCACTGA+CGG 0.577798 4.2:+13023669 None:intergenic
GTGAGCTGATAATCAGCACC+AGG 0.579712 4.2:+13023711 None:intergenic
ACTAACGTTCCATCTTCTCA+AGG 0.580112 4.2:-13023337 MS.gene08804:CDS
TGGCACCATCATTGGATGCA+AGG 0.580252 4.2:-13023863 MS.gene08804:CDS
GCAAGACATGGTGGTAGCAG+AGG 0.588840 4.2:-13023841 MS.gene08804:CDS
ACTAGTGGTGTGGATATGCC+TGG 0.593754 4.2:-13023729 MS.gene08804:CDS
AGAAAGAAGTCCAAAGACAA+TGG 0.595443 4.2:-13023075 MS.gene08804:CDS
AGCAGCGCCATCTCCAAACA+AGG 0.603893 4.2:+13023485 None:intergenic
TGGTTCAGATCCATTACCTG+AGG 0.605510 4.2:-13023451 MS.gene08804:CDS
GACTAGCCACAACTGGTGAA+GGG 0.607161 4.2:-13023053 MS.gene08804:CDS
ACGAAAGTAGTAATCAGGAT+AGG 0.608904 4.2:+13024138 None:intergenic
GTCCACACTAACTCAAACAA+AGG 0.609914 4.2:+13023420 None:intergenic
TCCCACAAGACTATCAAGAT+GGG 0.611475 4.2:+13023512 None:intergenic
AGCGATTCTTGACCAAGTTG+AGG 0.611679 4.2:-13023202 MS.gene08804:CDS
ATTACTCAACACATTTCGAG+TGG 0.621388 4.2:+13023146 None:intergenic
ATTGGATGCAAGGCAAGACA+TGG 0.621464 4.2:-13023853 MS.gene08804:CDS
TATTGATGGTCACCTTCGCG+AGG 0.623303 4.2:-13023364 MS.gene08804:CDS
AGGCATATCCACACCACTAG+TGG 0.631547 4.2:+13023731 None:intergenic
TAGCTCCTTCACTATCAGGA+AGG 0.639577 4.2:+13023385 None:intergenic
TCACTGCAGTCACATTTCGT+GGG 0.640496 4.2:-13023545 MS.gene08804:CDS
TGGTGGTAGCAGAGGTACCA+AGG 0.640700 4.2:-13023833 MS.gene08804:CDS
ACAATCCTTCCTGATAGTGA+AGG 0.644822 4.2:-13023390 MS.gene08804:CDS
CAGTCTCAACAGTAAGTCCA+GGG 0.652785 4.2:+13023001 None:intergenic
ACGTTAGTCCAACCTCGCGA+AGG 0.653377 4.2:+13023352 None:intergenic
TTATAATCAGATATACCCAA+AGG 0.655709 4.2:+13023258 None:intergenic
AAAAGTCTATGATTAAGAAG+CGG 0.662001 4.2:-13023941 MS.gene08804:CDS
CTCTGATCAACACAATTGGG+AGG 0.666044 4.2:+13024163 None:intergenic
ACAAAAGCGATCAAGGAATG+GGG 0.673405 4.2:-13023792 MS.gene08804:CDS
GCGGTACATGTATTTAACAG+AGG 0.677627 4.2:-13023922 MS.gene08804:CDS
ACTGGTGAAGGGCTTGAATG+GGG 0.679248 4.2:-13023042 MS.gene08804:CDS
GTTATATGATGTACCAACAA+GGG 0.680098 4.2:-13023656 MS.gene08804:CDS
GGATGCAAGGCAAGACATGG+TGG 0.685874 4.2:-13023850 MS.gene08804:CDS
CAAGAATCGCTGGTCCACCG+GGG 0.742378 4.2:+13023214 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTCATTGAAATATATTTC+AGG - chr4.2:13023193-13023212 MS.gene08804:CDS 15.0%
! AAAAGTCTATGATTAAGAAG+CGG - chr4.2:13023218-13023237 MS.gene08804:CDS 25.0%
! GAAATGTGTTGAGTAATTAT+GGG - chr4.2:13024019-13024038 MS.gene08804:intron 25.0%
! TATCTCAAAGAATATCGAAA+AGG - chr4.2:13023858-13023877 MS.gene08804:CDS 25.0%
! TCTTTAACAAACATTGTCTT+TGG + chr4.2:13023146-13023165 None:intergenic 25.0%
! TTATAATCAGATATACCCAA+AGG + chr4.2:13023904-13023923 None:intergenic 25.0%
!! CTGATTATAACTCAATCTTT+TGG - chr4.2:13023914-13023933 MS.gene08804:CDS 25.0%
AGATATACCCAAAGGTTTAA+AGG + chr4.2:13023896-13023915 None:intergenic 30.0%
ATCATATAACGTTTCACTGA+CGG + chr4.2:13023493-13023512 None:intergenic 30.0%
CGAAATGTGTTGAGTAATTA+TGG - chr4.2:13024018-13024037 MS.gene08804:intron 30.0%
GTTATATGATGTACCAACAA+GGG - chr4.2:13023503-13023522 MS.gene08804:CDS 30.0%
!! ATATTCTTTGAGATAAGTCC+AGG + chr4.2:13023853-13023872 None:intergenic 30.0%
AAAGAATATCGAAAAGGCCT+TGG - chr4.2:13023864-13023883 MS.gene08804:CDS 35.0%
AAAGATGAGATGAGTGATCT+TGG + chr4.2:13023404-13023423 None:intergenic 35.0%
AACAAAAGCGATCAAGGAAT+GGG - chr4.2:13023366-13023385 MS.gene08804:CDS 35.0%
ACGAAAGTAGTAATCAGGAT+AGG + chr4.2:13023024-13023043 None:intergenic 35.0%
AGAAAGAAGTCCAAAGACAA+TGG - chr4.2:13024084-13024103 MS.gene08804:intron 35.0%
ATTACTCAACACATTTCGAG+TGG + chr4.2:13024016-13024035 None:intergenic 35.0%
CGTTATATGATGTACCAACA+AGG - chr4.2:13023502-13023521 MS.gene08804:CDS 35.0%
GTAACACGAAAGTAGTAATC+AGG + chr4.2:13023029-13023048 None:intergenic 35.0%
GTTGAAGCCTTTAAACCTTT+GGG - chr4.2:13023886-13023905 MS.gene08804:CDS 35.0%
TATCAGCTCACAAAATTGCT+AGG - chr4.2:13023460-13023479 MS.gene08804:CDS 35.0%
TCTTCGTTTGGCTAAAGATT+TGG - chr4.2:13023546-13023565 MS.gene08804:CDS 35.0%
! AGGTTTGAAGCCTGAAAAAT+TGG - chr4.2:13023987-13024006 MS.gene08804:intron 35.0%
ACAAAAGCGATCAAGGAATG+GGG - chr4.2:13023367-13023386 MS.gene08804:CDS 40.0%
ACGAGCACCTTTATTGTTCT+CGG + chr4.2:13023572-13023591 None:intergenic 40.0%
ACTAACGTTCCATCTTCTCA+AGG - chr4.2:13023822-13023841 MS.gene08804:CDS 40.0%
AGATGAGTGATCTTGGACTT+TGG + chr4.2:13023397-13023416 None:intergenic 40.0%
AGGTTTAAAGGCTTCAACCA+AGG + chr4.2:13023884-13023903 None:intergenic 40.0%
CAACAAAAGCGATCAAGGAA+TGG - chr4.2:13023365-13023384 MS.gene08804:CDS 40.0%
GATAGTGAAGGAGCTATTGA+TGG - chr4.2:13023781-13023800 MS.gene08804:CDS 40.0%
GATTTGGCCGAGAACAATAA+AGG - chr4.2:13023562-13023581 MS.gene08804:CDS 40.0%
GCACTCTGATCAACACAATT+GGG + chr4.2:13023002-13023021 None:intergenic 40.0%
GCCATGTAAGCACACATATT+GGG + chr4.2:13023280-13023299 None:intergenic 40.0%
GCGGTACATGTATTTAACAG+AGG - chr4.2:13023237-13023256 MS.gene08804:CDS 40.0%
GGTTGAAGCCTTTAAACCTT+TGG - chr4.2:13023885-13023904 MS.gene08804:CDS 40.0%
GTCCACACTAACTCAAACAA+AGG + chr4.2:13023742-13023761 None:intergenic 40.0%
TCAATAGCTCCTTCACTATC+AGG + chr4.2:13023781-13023800 None:intergenic 40.0%
TCCCAATATGTGTGCTTACA+TGG - chr4.2:13023276-13023295 MS.gene08804:CDS 40.0%
TCCCACAAGACTATCAAGAT+GGG + chr4.2:13023650-13023669 None:intergenic 40.0%
TGCCATGTAAGCACACATAT+TGG + chr4.2:13023281-13023300 None:intergenic 40.0%
! AACCTAACTTGTCCTCAACT+TGG + chr4.2:13023972-13023991 None:intergenic 40.0%
! ACAATCCTTCCTGATAGTGA+AGG - chr4.2:13023769-13023788 MS.gene08804:CDS 40.0%
! CTCATCTTTTGTACCACTAG+TGG - chr4.2:13023415-13023434 MS.gene08804:CDS 40.0%
! GACCTTTGTTTGAGTTAGTG+TGG - chr4.2:13023737-13023756 MS.gene08804:CDS 40.0%
!! ACCCATCTTGATAGTCTTGT+GGG - chr4.2:13023646-13023665 MS.gene08804:CDS 40.0%
AACAAAGGTCTCTCAACCTC+AGG + chr4.2:13023727-13023746 None:intergenic 45.0%
AACTGGTGAAGGGCTTGAAT+GGG - chr4.2:13024116-13024135 MS.gene08804:CDS 45.0%
ACAGTCTCAACAGTAAGTCC+AGG + chr4.2:13024162-13024181 None:intergenic 45.0%
AGCAGCAACAAAAGCGATCA+AGG - chr4.2:13023360-13023379 MS.gene08804:CDS 45.0%
AGCGATTCTTGACCAAGTTG+AGG - chr4.2:13023957-13023976 MS.gene08804:intron 45.0%
ATCACTGCAGTCACATTTCG+TGG - chr4.2:13023613-13023632 MS.gene08804:CDS 45.0%
ATTGGATGCAAGGCAAGACA+TGG - chr4.2:13023306-13023325 MS.gene08804:CDS 45.0%
CAGTCTCAACAGTAAGTCCA+GGG + chr4.2:13024161-13024180 None:intergenic 45.0%
CTCTGATCAACACAATTGGG+AGG + chr4.2:13022999-13023018 None:intergenic 45.0%
GGCACTCTGATCAACACAAT+TGG + chr4.2:13023003-13023022 None:intergenic 45.0%
GTCCCACAAGACTATCAAGA+TGG + chr4.2:13023651-13023670 None:intergenic 45.0%
TAGCTCCTTCACTATCAGGA+AGG + chr4.2:13023777-13023796 None:intergenic 45.0%
TCAACTTGGTCAAGAATCGC+TGG + chr4.2:13023958-13023977 None:intergenic 45.0%
TCACTGCAGTCACATTTCGT+GGG - chr4.2:13023614-13023633 MS.gene08804:CDS 45.0%
TCTTGCCTTGCATCCAATGA+TGG + chr4.2:13023304-13023323 None:intergenic 45.0%
TGCTTACATGGCACCATCAT+TGG - chr4.2:13023288-13023307 MS.gene08804:CDS 45.0%
TGGTTCAGATCCATTACCTG+AGG - chr4.2:13023708-13023727 MS.gene08804:CDS 45.0%
! ATCTTTTGGATTGCTCACCC+CGG - chr4.2:13023928-13023947 MS.gene08804:CDS 45.0%
! CACCCATCTTGATAGTCTTG+TGG - chr4.2:13023645-13023664 MS.gene08804:CDS 45.0%
! CGAGTGGCTTCCAATTTTTC+AGG + chr4.2:13024000-13024019 None:intergenic 45.0%
! CTTGAATGGGGTGTGTTGTT+TGG - chr4.2:13024129-13024148 MS.gene08804:CDS 45.0%
! CTTTTGTACCACTAGTGGTG+TGG - chr4.2:13023420-13023439 MS.gene08804:CDS 45.0%
! GACCAAGTTGAGGACAAGTT+AGG - chr4.2:13023967-13023986 MS.gene08804:intron 45.0%
! GCTGCTTCTTTTCCTAACCT+TGG + chr4.2:13023346-13023365 None:intergenic 45.0%
! TGTGGCTAGTCCATTGTCTT+TGG + chr4.2:13024097-13024116 None:intergenic 45.0%
!! CTATCAAGATGGGTGTCACT+AGG + chr4.2:13023640-13023659 None:intergenic 45.0%
!! TAAAGGTGCTCGTGTTCTTG+TGG - chr4.2:13023579-13023598 MS.gene08804:CDS 45.0%
!!! TACCAACAAGGGTGTTTTGC+TGG - chr4.2:13023514-13023533 MS.gene08804:CDS 45.0%
!!! TGGGGTGTGTTGTTTGGTTT+TGG - chr4.2:13024135-13024154 MS.gene08804:CDS 45.0%
ACTAGTGGTGTGGATATGCC+TGG - chr4.2:13023430-13023449 MS.gene08804:CDS 50.0%
ACTGGTGAAGGGCTTGAATG+GGG - chr4.2:13024117-13024136 MS.gene08804:CDS 50.0%
AGGCATATCCACACCACTAG+TGG + chr4.2:13023431-13023450 None:intergenic 50.0%
CAACTGGTGAAGGGCTTGAA+TGG - chr4.2:13024115-13024134 MS.gene08804:CDS 50.0%
CACCAGCAAAACACCCTTGT+TGG + chr4.2:13023519-13023538 None:intergenic 50.0%
CAGGCACATCCTTGAGAAGA+TGG + chr4.2:13023834-13023853 None:intergenic 50.0%
CATCTTCTCAAGGATGTGCC+TGG - chr4.2:13023832-13023851 MS.gene08804:CDS 50.0%
GGTCTCTCAACCTCAGGTAA+TGG + chr4.2:13023721-13023740 None:intergenic 50.0%
GTGAGCTGATAATCAGCACC+AGG + chr4.2:13023451-13023470 None:intergenic 50.0%
TGGCACCATCATTGGATGCA+AGG - chr4.2:13023296-13023315 MS.gene08804:CDS 50.0%
TGGTGGTACGGTTCTTCGTT+TGG - chr4.2:13023534-13023553 MS.gene08804:CDS 50.0%
TTCAAGCCCTTCACCAGTTG+TGG + chr4.2:13024115-13024134 None:intergenic 50.0%
! GACTAGCCACAACTGGTGAA+GGG - chr4.2:13024106-13024125 MS.gene08804:CDS 50.0%
! TATTGATGGTCACCTTCGCG+AGG - chr4.2:13023795-13023814 MS.gene08804:CDS 50.0%
!! AGGGTGTTTTGCTGGTGGTA+CGG - chr4.2:13023522-13023541 MS.gene08804:CDS 50.0%
!! CTTGTGGGACAAGCCTTGTT+TGG - chr4.2:13023661-13023680 MS.gene08804:CDS 50.0%
!! GACAATGGACTAGCCACAAC+TGG - chr4.2:13024099-13024118 MS.gene08804:CDS 50.0%
!! GGACAAGCCTTGTTTGGAGA+TGG - chr4.2:13023667-13023686 MS.gene08804:CDS 50.0%
!! GTAGCAGAGGTACCAAGGTT+AGG - chr4.2:13023331-13023350 MS.gene08804:CDS 50.0%
!!! CAACAAGGGTGTTTTGCTGG+TGG - chr4.2:13023517-13023536 MS.gene08804:CDS 50.0%
!!! GTGTTGTTTGGTTTTGGCCC+TGG - chr4.2:13024141-13024160 MS.gene08804:CDS 50.0%
ACGTTAGTCCAACCTCGCGA+AGG + chr4.2:13023810-13023829 None:intergenic 55.0%
AGCAGCGCCATCTCCAAACA+AGG + chr4.2:13023677-13023696 None:intergenic 55.0%
GCAAGACATGGTGGTAGCAG+AGG - chr4.2:13023318-13023337 MS.gene08804:CDS 55.0%
GGATGCAAGGCAAGACATGG+TGG - chr4.2:13023309-13023328 MS.gene08804:CDS 55.0%
GTCAAGAATCGCTGGTCCAC+CGG + chr4.2:13023950-13023969 None:intergenic 55.0%
TCAAGAATCGCTGGTCCACC+GGG + chr4.2:13023949-13023968 None:intergenic 55.0%
! TTTTGGATTGCTCACCCCGG+TGG - chr4.2:13023931-13023950 MS.gene08804:CDS 55.0%
!! GGACTAGCCACAACTGGTGA+AGG - chr4.2:13024105-13024124 MS.gene08804:CDS 55.0%
!! TGGTGGTAGCAGAGGTACCA+AGG - chr4.2:13023326-13023345 MS.gene08804:CDS 55.0%
CAAGAATCGCTGGTCCACCG+GGG + chr4.2:13023948-13023967 None:intergenic 60.0%
GATGGTCACCTTCGCGAGGT+TGG - chr4.2:13023799-13023818 MS.gene08804:CDS 60.0%
GGCGCTGCTGCTGTGATCGT+TGG - chr4.2:13023688-13023707 MS.gene08804:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 13022975 13024206 13022975 ID=MS.gene08804
chr4.2 mRNA 13022975 13024206 13022975 ID=MS.gene08804.t1;Parent=MS.gene08804
chr4.2 exon 13024086 13024206 13024086 ID=MS.gene08804.t1.exon1;Parent=MS.gene08804.t1
chr4.2 CDS 13024086 13024206 13024086 ID=cds.MS.gene08804.t1;Parent=MS.gene08804.t1
chr4.2 exon 13022975 13023966 13022975 ID=MS.gene08804.t1.exon2;Parent=MS.gene08804.t1
chr4.2 CDS 13022975 13023966 13022975 ID=cds.MS.gene08804.t1;Parent=MS.gene08804.t1
Gene Sequence

>MS.gene08804

ATGGCAATTGGCACTGCAACTCCTCCCAATTGTGTTGATCAGAGTGCCTATCCTGATTACTACTTTCGTGTTACAAACAGTGAACACATGACAGAACTCAAACATAAATTCAAGCGCATGTGTAAGATATTTACATTTCTCTCATTATCTTCATTTTGATTTCTAATACCAAAGACAATGTTTGTTAAAGAAATGTATATTGAGTATACTAATGAAATTATTCATTGAAATATATTTCAGGTGAAAAGTCTATGATTAAGAAGCGGTACATGTATTTAACAGAGGAAATTCTAAAAGAAAATCCCAATATGTGTGCTTACATGGCACCATCATTGGATGCAAGGCAAGACATGGTGGTAGCAGAGGTACCAAGGTTAGGAAAAGAAGCAGCAACAAAAGCGATCAAGGAATGGGGTCAACCAAAGTCCAAGATCACTCATCTCATCTTTTGTACCACTAGTGGTGTGGATATGCCTGGTGCTGATTATCAGCTCACAAAATTGCTAGGACTTCGTCCGTCAGTGAAACGTTATATGATGTACCAACAAGGGTGTTTTGCTGGTGGTACGGTTCTTCGTTTGGCTAAAGATTTGGCCGAGAACAATAAAGGTGCTCGTGTTCTTGTGGTTTGTTCAGAGATCACTGCAGTCACATTTCGTGGGCCTAGTGACACCCATCTTGATAGTCTTGTGGGACAAGCCTTGTTTGGAGATGGCGCTGCTGCTGTGATCGTTGGTTCAGATCCATTACCTGAGGTTGAGAGACCTTTGTTTGAGTTAGTGTGGACTGCACAAACAATCCTTCCTGATAGTGAAGGAGCTATTGATGGTCACCTTCGCGAGGTTGGACTAACGTTCCATCTTCTCAAGGATGTGCCTGGACTTATCTCAAAGAATATCGAAAAGGCCTTGGTTGAAGCCTTTAAACCTTTGGGTATATCTGATTATAACTCAATCTTTTGGATTGCTCACCCCGGTGGACCAGCGATTCTTGACCAAGTTGAGGACAAGTTAGGTTTGAAGCCTGAAAAATTGGAAGCCACTCGAAATGTGTTGAGTAATTATGGGAACATGTCAAGTGCATGTGTGTTGTTCATTTTAGATGAAATGAGAAAGAAGTCCAAAGACAATGGACTAGCCACAACTGGTGAAGGGCTTGAATGGGGTGTGTTGTTTGGTTTTGGCCCTGGACTTACTGTTGAGACTGTTGTGCTTCGTAGTGTTGCTGTTTGA
Protein sequence

>MS.gene08804.t1

MAIGTATPPNCVDQSAYPDYYFRVTNSEHMTELKHKFKRMCEKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDMVVAEVPRLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAVIVGSDPLPEVERPLFELVWTAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKALVEAFKPLGISDYNSIFWIAHPGGPAILDQVEDKLGLKPEKLEATRNVLSNYGNMSSACVLFILDEMRKKSKDNGLATTGEGLEWGVLFGFGPGLTVETVVLRSVAV