Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08823.t1 | XP_003629613.1 | 100 | 145 | 0 | 0 | 1 | 145 | 1 | 145 | 2.40E-84 | 321.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08823.t1 | Q65WT0 | 88.3 | 145 | 17 | 0 | 1 | 145 | 1 | 145 | 3.4e-79 | 295.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08823.t1 | G7LH30 | 100.0 | 145 | 0 | 0 | 1 | 145 | 1 | 145 | 1.7e-84 | 321.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene067412 | MS.gene08823 | PPI |
| MS.gene08823 | MS.gene83541 | PPI |
| MS.gene08823 | MS.gene86409 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08823.t1 | MTR_8g083120 | 100.000 | 145 | 0 | 0 | 1 | 145 | 1 | 145 | 2.02e-107 | 302 |
| MS.gene08823.t1 | MTR_4g117260 | 96.552 | 145 | 5 | 0 | 1 | 145 | 1 | 145 | 2.37e-104 | 294 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08823.t1 | AT4G21110 | 87.586 | 145 | 18 | 0 | 1 | 145 | 1 | 145 | 1.22e-96 | 275 |
| MS.gene08823.t1 | AT4G21110 | 87.586 | 145 | 18 | 0 | 1 | 145 | 1 | 145 | 1.22e-96 | 275 |
Find 43 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAAAATGCGAGACTTTA+TGG | 0.169673 | 4.2:+13330797 | MS.gene08823:CDS |
| TCAATTAACTCCCAGCCTTC+TGG | 0.236033 | 4.2:-13330590 | None:intergenic |
| TTCTCCTCCCTGAGTTGCTT+TGG | 0.321238 | 4.2:-13332467 | None:intergenic |
| ACTCGGTTGGTCTTTACTTT+CGG | 0.333171 | 4.2:-13330560 | None:intergenic |
| ATCGCAATCTAATCGCAAAA+TGG | 0.369378 | 4.2:+13330932 | MS.gene08823:CDS |
| AGAATTGTATGAATTCTGTT+TGG | 0.378231 | 4.2:+13330894 | MS.gene08823:CDS |
| TATGAATTCTGTTTGGATCA+AGG | 0.394850 | 4.2:+13330901 | MS.gene08823:CDS |
| CAATTAACTCCCAGCCTTCT+GGG | 0.426980 | 4.2:-13330589 | None:intergenic |
| CCGACACTCCGCGAACTTCA+AGG | 0.430685 | 4.2:+13330614 | MS.gene08823:CDS |
| CAAACACATAGCGACTCTTC+TGG | 0.436297 | 4.2:-13330840 | None:intergenic |
| TTCTGGGTATTTAACTCGGT+TGG | 0.455796 | 4.2:-13330573 | None:intergenic |
| TCATCTTTCCTTGAAGTTCG+CGG | 0.462364 | 4.2:-13330622 | None:intergenic |
| TAGAAATTTCCTTCCTCCGA+TGG | 0.470939 | 4.2:-13330870 | None:intergenic |
| TTTCCTTCCTCCGATGGTAA+AGG | 0.496872 | 4.2:-13330864 | None:intergenic |
| GAGTTAAATACCCAGAAGGC+TGG | 0.499763 | 4.2:+13330579 | MS.gene08823:CDS |
| AGCCTTCTGGGTATTTAACT+CGG | 0.506523 | 4.2:-13330577 | None:intergenic |
| GCAGAGTACCAAAGCAACTC+AGG | 0.516175 | 4.2:+13332459 | MS.gene08823:CDS |
| CCTTGAAGTTCGCGGAGTGT+CGG | 0.528211 | 4.2:-13330614 | None:intergenic |
| TCTAATCGCAAAATGGAAGA+AGG | 0.546868 | 4.2:+13330939 | MS.gene08823:CDS |
| AAAGCAACTCAGGGAGGAGA+AGG | 0.553597 | 4.2:+13332469 | MS.gene08823:CDS |
| ATGTGTTTGACCTTTACCAT+CGG | 0.556366 | 4.2:+13330854 | MS.gene08823:CDS |
| GTGCGTCCATTGTGGTTGCA+AGG | 0.559549 | 4.2:+13332499 | MS.gene08823:CDS |
| AGTTAAATACCCAGAAGGCT+GGG | 0.562623 | 4.2:+13330580 | MS.gene08823:CDS |
| ATGAACGTCTTTGTTGCTTG+AGG | 0.568236 | 4.2:+13332393 | MS.gene08823:CDS |
| CAACAAAGACGTTCATAACC+AGG | 0.568451 | 4.2:-13332386 | None:intergenic |
| GCGAACTTCAAGGAAAGATG+AGG | 0.592435 | 4.2:+13330624 | MS.gene08823:CDS |
| TGACCTTTACCATCGGAGGA+AGG | 0.596413 | 4.2:+13330861 | MS.gene08823:CDS |
| GGTTGCAAGGGATGTGCAAG+TGG | 0.596759 | 4.2:+13332512 | MS.gene08823:CDS |
| CACATCCCTTGCAACCACAA+TGG | 0.602061 | 4.2:-13332505 | None:intergenic |
| GCTGAGAATGATCCACATGA+TGG | 0.604881 | 4.2:+13330772 | MS.gene08823:intron |
| GTTATAGAGTGCGTCCATTG+TGG | 0.606111 | 4.2:+13332491 | MS.gene08823:CDS |
| TGCGTCCATTGTGGTTGCAA+GGG | 0.612467 | 4.2:+13332500 | MS.gene08823:CDS |
| TGGTACTCTGCACACACAAG+TGG | 0.614153 | 4.2:-13332447 | None:intergenic |
| GTTGCAAGGGATGTGCAAGT+GGG | 0.621084 | 4.2:+13332513 | MS.gene08823:CDS |
| TACTCTGCACACACAAGTGG+TGG | 0.624405 | 4.2:-13332444 | None:intergenic |
| TTGCAAGGGATGTGCAAGTG+GGG | 0.627037 | 4.2:+13332514 | MS.gene08823:CDS |
| CGAACTTCAAGGAAAGATGA+GGG | 0.628080 | 4.2:+13330625 | MS.gene08823:CDS |
| CAGAGTACCAAAGCAACTCA+GGG | 0.635282 | 4.2:+13332460 | MS.gene08823:CDS |
| TGTTTGACCTTTACCATCGG+AGG | 0.636836 | 4.2:+13330857 | MS.gene08823:CDS |
| CTTCAAGGAAAGATGAGGGA+AGG | 0.644926 | 4.2:+13330629 | MS.gene08823:CDS |
| AACCGAGTTAAATACCCAGA+AGG | 0.655859 | 4.2:+13330575 | MS.gene08823:CDS |
| GTGGCAAAATTGTGATCGCG+TGG | 0.681130 | 4.2:-13332425 | None:intergenic |
| AGTACCAAAGCAACTCAGGG+AGG | 0.696329 | 4.2:+13332463 | MS.gene08823:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTAATTTTGAAATCTA+TGG | + | chr4.2:13330715-13330734 | MS.gene08823:intron | 10.0% |
| !!! | CAATAATTATATGTGATTTT+TGG | - | chr4.2:13332255-13332274 | None:intergenic | 15.0% |
| !!! | TAGTTTCAAATATTTTAAGT+TGG | - | chr4.2:13331788-13331807 | None:intergenic | 15.0% |
| !!! | TTGATTCTAAATATACTTTT+GGG | + | chr4.2:13331123-13331142 | MS.gene08823:intron | 15.0% |
| !! | AATAATCCTTAAACATTACA+AGG | + | chr4.2:13331312-13331331 | MS.gene08823:intron | 20.0% |
| !! | ATACCTCTAAATTAAAACTA+AGG | + | chr4.2:13331420-13331439 | MS.gene08823:intron | 20.0% |
| !! | ATGAGAAAATATCAATTCTT+TGG | + | chr4.2:13332162-13332181 | MS.gene08823:intron | 20.0% |
| !! | TGAGAAAATATCAATTCTTT+GGG | + | chr4.2:13332163-13332182 | MS.gene08823:intron | 20.0% |
| !!! | AATATTTTAAGTTGGAATAC+TGG | - | chr4.2:13331780-13331799 | None:intergenic | 20.0% |
| !!! | ATTATATTGTATGCTAGTTT+TGG | - | chr4.2:13331477-13331496 | None:intergenic | 20.0% |
| !!! | ATTCCTTAGTTTTAATTTAG+AGG | - | chr4.2:13331426-13331445 | None:intergenic | 20.0% |
| !!! | CTTGATTCTAAATATACTTT+TGG | + | chr4.2:13331122-13331141 | MS.gene08823:intron | 20.0% |
| !!! | TTATATTGTATGCTAGTTTT+GGG | - | chr4.2:13331476-13331495 | None:intergenic | 20.0% |
| ! | AACGTAGAATAAGTTTGATT+AGG | + | chr4.2:13331046-13331065 | MS.gene08823:intron | 25.0% |
| ! | AGAATTGTATGAATTCTGTT+TGG | + | chr4.2:13330894-13330913 | MS.gene08823:CDS | 25.0% |
| ! | AGTAATATTAATACACAGGT+AGG | - | chr4.2:13332311-13332330 | None:intergenic | 25.0% |
| ! | ATATTTCAATAATTGTCGCT+AGG | - | chr4.2:13332231-13332250 | None:intergenic | 25.0% |
| ! | TAAGTAAGAAATCCAAATAC+AGG | + | chr4.2:13331072-13331091 | MS.gene08823:intron | 25.0% |
| !! | GAATCATATTTTCAGTTTGA+TGG | + | chr4.2:13332124-13332143 | MS.gene08823:intron | 25.0% |
| !! | TGGTGTGCAATTTTAAATAT+AGG | - | chr4.2:13330823-13330842 | None:intergenic | 25.0% |
| !! | TTTATAACTTGTCCAAAGTA+TGG | + | chr4.2:13331619-13331638 | MS.gene08823:intron | 25.0% |
| !!! | TATATTGTATGCTAGTTTTG+GGG | - | chr4.2:13331475-13331494 | None:intergenic | 25.0% |
| !!! | TTTGTGATGTCTTTTTTATG+TGG | + | chr4.2:13330747-13330766 | MS.gene08823:intron | 25.0% |
| AAAGAAAATGCGAGACTTTA+TGG | + | chr4.2:13330797-13330816 | MS.gene08823:CDS | 30.0% | |
| AATTAACTGAAGGCAATATG+AGG | - | chr4.2:13332286-13332305 | None:intergenic | 30.0% | |
| ACAATATAATTTCTCGCAAC+AGG | + | chr4.2:13331487-13331506 | MS.gene08823:intron | 30.0% | |
| ACTTCAAAGAATTACTTGAG+CGG | + | chr4.2:13331268-13331287 | MS.gene08823:intron | 30.0% | |
| AGTGAAGCTTAAGAAAGTTA+AGG | - | chr4.2:13331735-13331754 | None:intergenic | 30.0% | |
| ATGATTCTTCAATCGTATTG+AGG | - | chr4.2:13332111-13332130 | None:intergenic | 30.0% | |
| ATTAACTGAAGGCAATATGA+GGG | - | chr4.2:13332285-13332304 | None:intergenic | 30.0% | |
| CATAAATAGCCATTCACAAT+TGG | - | chr4.2:13331971-13331990 | None:intergenic | 30.0% | |
| GAAGTTACCATTGCATTATA+AGG | - | chr4.2:13331344-13331363 | None:intergenic | 30.0% | |
| GCGTAGTAATATTAATACAC+AGG | - | chr4.2:13332315-13332334 | None:intergenic | 30.0% | |
| GTAGAATAAGTTTGATTAGG+AGG | + | chr4.2:13331049-13331068 | MS.gene08823:intron | 30.0% | |
| TATGAATTCTGTTTGGATCA+AGG | + | chr4.2:13330901-13330920 | MS.gene08823:CDS | 30.0% | |
| TCATTTCCAAGAGACTAAAA+TGG | - | chr4.2:13331680-13331699 | None:intergenic | 30.0% | |
| TGACTACCTTGTAATGTTTA+AGG | - | chr4.2:13331321-13331340 | None:intergenic | 30.0% | |
| TGATTCTTCAATCGTATTGA+GGG | - | chr4.2:13332110-13332129 | None:intergenic | 30.0% | |
| TTAATATTACTACGCACTCT+TGG | + | chr4.2:13332320-13332339 | MS.gene08823:intron | 30.0% | |
| TTGGACAAGTTATAAATGAC+AGG | - | chr4.2:13331615-13331634 | None:intergenic | 30.0% | |
| ! | CATTTTCTTTTTCCATCATG+TGG | - | chr4.2:13330787-13330806 | None:intergenic | 30.0% |
| ! | CTATTTTATAGTTCACTTGC+TGG | + | chr4.2:13331805-13331824 | MS.gene08823:intron | 30.0% |
| ! | GCTTTTACTAAGATGTTATG+CGG | + | chr4.2:13332193-13332212 | MS.gene08823:intron | 30.0% |
| ! | TCATATTTTCAGTTTGATGG+AGG | + | chr4.2:13332127-13332146 | MS.gene08823:intron | 30.0% |
| ! | TTTGCCTGAAGCATAATTTT+TGG | - | chr4.2:13331590-13331609 | None:intergenic | 30.0% |
| !! | TGAACAGTATGTGTTAGTTT+TGG | + | chr4.2:13331697-13331716 | MS.gene08823:intron | 30.0% |
| !!! | AAGCATAATTTTTGGCTTCA+CGG | - | chr4.2:13331582-13331601 | None:intergenic | 30.0% |
| !!! | TTTTCAAGAAGCACTGATTT+TGG | + | chr4.2:13331852-13331871 | MS.gene08823:intron | 30.0% |
| ATCATACACAACACTAGGTT+CGG | - | chr4.2:13331655-13331674 | None:intergenic | 35.0% | |
| ATCGCAATCTAATCGCAAAA+TGG | + | chr4.2:13330932-13330951 | MS.gene08823:CDS | 35.0% | |
| ATGTGTTTGACCTTTACCAT+CGG | + | chr4.2:13330854-13330873 | MS.gene08823:CDS | 35.0% | |
| CAGGTAGGTTAATTAACTGA+AGG | - | chr4.2:13332296-13332315 | None:intergenic | 35.0% | |
| CTATTGACAGAACAGAAACA+AGG | - | chr4.2:13331236-13331255 | None:intergenic | 35.0% | |
| CTTCAAAGAATTACTTGAGC+GGG | + | chr4.2:13331269-13331288 | MS.gene08823:intron | 35.0% | |
| GAAGCCAAAAATTATGCTTC+AGG | + | chr4.2:13331583-13331602 | MS.gene08823:intron | 35.0% | |
| GAAGCTTAAGAAAGTTAAGG+AGG | - | chr4.2:13331732-13331751 | None:intergenic | 35.0% | |
| GATTCTTCAATCGTATTGAG+GGG | - | chr4.2:13332109-13332128 | None:intergenic | 35.0% | |
| GTAGTCACCTTATAATGCAA+TGG | + | chr4.2:13331334-13331353 | MS.gene08823:intron | 35.0% | |
| TCTAATCGCAAAATGGAAGA+AGG | + | chr4.2:13330939-13330958 | MS.gene08823:CDS | 35.0% | |
| ! | ACTTGTCCAAAGTATGGTTT+TGG | + | chr4.2:13331625-13331644 | MS.gene08823:intron | 35.0% |
| ! | CTTGTCCAAAGTATGGTTTT+GGG | + | chr4.2:13331626-13331645 | MS.gene08823:intron | 35.0% |
| !! | ACTAGTCAGAAGTACTAAGA+TGG | - | chr4.2:13331537-13331556 | None:intergenic | 35.0% |
| !! | TGATCTCCATTTTAGTCTCT+TGG | + | chr4.2:13331671-13331690 | MS.gene08823:intron | 35.0% |
| !! | TTGTCCAAAGTATGGTTTTG+GGG | + | chr4.2:13331627-13331646 | MS.gene08823:intron | 35.0% |
| !!! | GTATGTGTTAGTTTTGGTAG+AGG | + | chr4.2:13331703-13331722 | MS.gene08823:intron | 35.0% |
| !!! | TTTGTTTTTAAACTGCAGCC+TGG | + | chr4.2:13332368-13332387 | MS.gene08823:intron | 35.0% |
| AACCGAGTTAAATACCCAGA+AGG | + | chr4.2:13330575-13330594 | MS.gene08823:CDS | 40.0% | |
| ACCTCTTCCTTCATTACAGT+CGG | - | chr4.2:13331099-13331118 | None:intergenic | 40.0% | |
| ACTTCTGACTAGTAATGACG+TGG | + | chr4.2:13331544-13331563 | MS.gene08823:intron | 40.0% | |
| AGCCTTCTGGGTATTTAACT+CGG | - | chr4.2:13330580-13330599 | None:intergenic | 40.0% | |
| AGTTAAATACCCAGAAGGCT+GGG | + | chr4.2:13330580-13330599 | MS.gene08823:CDS | 40.0% | |
| ATTACAGTCGGTCCTGTATT+TGG | - | chr4.2:13331087-13331106 | None:intergenic | 40.0% | |
| CAACAAAGACGTTCATAACC+AGG | - | chr4.2:13332389-13332408 | None:intergenic | 40.0% | |
| CACGGTATGTTAGGTTTGTA+GGG | - | chr4.2:13331366-13331385 | None:intergenic | 40.0% | |
| CAGAACAGAAACAAGGAGAT+TGG | - | chr4.2:13331229-13331248 | None:intergenic | 40.0% | |
| CGAACTTCAAGGAAAGATGA+GGG | + | chr4.2:13330625-13330644 | MS.gene08823:CDS | 40.0% | |
| TAGAAATTTCCTTCCTCCGA+TGG | - | chr4.2:13330873-13330892 | None:intergenic | 40.0% | |
| TCAACTGCTCCAATTGTGAA+TGG | + | chr4.2:13331959-13331978 | MS.gene08823:intron | 40.0% | |
| TCAGTTTGATGGAGGTCTTA+TGG | + | chr4.2:13332135-13332154 | MS.gene08823:intron | 40.0% | |
| TCATCTTTCCTTGAAGTTCG+CGG | - | chr4.2:13330625-13330644 | None:intergenic | 40.0% | |
| TGGAGATCATACACAACACT+AGG | - | chr4.2:13331660-13331679 | None:intergenic | 40.0% | |
| TTCTGGGTATTTAACTCGGT+TGG | - | chr4.2:13330576-13330595 | None:intergenic | 40.0% | |
| ! | ATGAACGTCTTTGTTGCTTG+AGG | + | chr4.2:13332393-13332412 | MS.gene08823:CDS | 40.0% |
| !! | ACTCGGTTGGTCTTTACTTT+CGG | - | chr4.2:13330563-13330582 | None:intergenic | 40.0% |
| !!! | AGTTTTGGGGAAAACTATGG+TGG | - | chr4.2:13331462-13331481 | None:intergenic | 40.0% |
| !!! | GCTAGTTTTGGGGAAAACTA+TGG | - | chr4.2:13331465-13331484 | None:intergenic | 40.0% |
| AACTGAAGGCAATATGAGGG+TGG | - | chr4.2:13332282-13332301 | None:intergenic | 45.0% | |
| AAGGAAAGATGAGGGAAGGT+TGG | + | chr4.2:13330633-13330652 | MS.gene08823:intron | 45.0% | |
| AAGTTGGAATACTGGAGACC+TGG | - | chr4.2:13331772-13331791 | None:intergenic | 45.0% | |
| ACCGACTGTAATGAAGGAAG+AGG | + | chr4.2:13331095-13331114 | MS.gene08823:intron | 45.0% | |
| ACCTAGTCTATCCTGATGGT+GGG | - | chr4.2:13331900-13331919 | None:intergenic | 45.0% | |
| AGTTGGAATACTGGAGACCT+GGG | - | chr4.2:13331771-13331790 | None:intergenic | 45.0% | |
| CAAACACATAGCGACTCTTC+TGG | - | chr4.2:13330843-13330862 | None:intergenic | 45.0% | |
| CAATTAACTCCCAGCCTTCT+GGG | - | chr4.2:13330592-13330611 | None:intergenic | 45.0% | |
| CTTCAAGGAAAGATGAGGGA+AGG | + | chr4.2:13330629-13330648 | MS.gene08823:CDS | 45.0% | |
| CTTTGTTGAGCAGAACTGCA+CGG | - | chr4.2:13331384-13331403 | None:intergenic | 45.0% | |
| GAGTTAAATACCCAGAAGGC+TGG | + | chr4.2:13330579-13330598 | MS.gene08823:CDS | 45.0% | |
| GCACGGTATGTTAGGTTTGT+AGG | - | chr4.2:13331367-13331386 | None:intergenic | 45.0% | |
| GCGAACTTCAAGGAAAGATG+AGG | + | chr4.2:13330624-13330643 | MS.gene08823:CDS | 45.0% | |
| GCTGAGAATGATCCACATGA+TGG | + | chr4.2:13330772-13330791 | MS.gene08823:intron | 45.0% | |
| GGAACCCCAAAACCATACTT+TGG | - | chr4.2:13331634-13331653 | None:intergenic | 45.0% | |
| GTTATAGAGTGCGTCCATTG+TGG | + | chr4.2:13332491-13332510 | MS.gene08823:CDS | 45.0% | |
| GTTGACCTAGTCTATCCTGA+TGG | - | chr4.2:13331904-13331923 | None:intergenic | 45.0% | |
| TAATCTTTCCTCCCACCATC+AGG | + | chr4.2:13331886-13331905 | MS.gene08823:intron | 45.0% | |
| TACAGGACCGACTGTAATGA+AGG | + | chr4.2:13331089-13331108 | MS.gene08823:intron | 45.0% | |
| TCAATTAACTCCCAGCCTTC+TGG | - | chr4.2:13330593-13330612 | None:intergenic | 45.0% | |
| TGTTTGACCTTTACCATCGG+AGG | + | chr4.2:13330857-13330876 | MS.gene08823:CDS | 45.0% | |
| TTTCCTTCCTCCGATGGTAA+AGG | - | chr4.2:13330867-13330886 | None:intergenic | 45.0% | |
| ! | CAGAGTACCAAAGCAACTCA+GGG | + | chr4.2:13332460-13332479 | MS.gene08823:CDS | 45.0% |
| !! | GATGGTGGGAGGAAAGATTA+TGG | - | chr4.2:13331886-13331905 | None:intergenic | 45.0% |
| AAAGCAACTCAGGGAGGAGA+AGG | + | chr4.2:13332469-13332488 | MS.gene08823:CDS | 50.0% | |
| AGTACCAAAGCAACTCAGGG+AGG | + | chr4.2:13332463-13332482 | MS.gene08823:CDS | 50.0% | |
| AGTCCTAAGGTGTGTGTGGT+TGG | - | chr4.2:13331182-13331201 | None:intergenic | 50.0% | |
| CACATCCCTTGCAACCACAA+TGG | - | chr4.2:13332508-13332527 | None:intergenic | 50.0% | |
| CGTGCAGTTCTGCTCAACAA+AGG | + | chr4.2:13331382-13331401 | MS.gene08823:intron | 50.0% | |
| GACCTAGTCTATCCTGATGG+TGG | - | chr4.2:13331901-13331920 | None:intergenic | 50.0% | |
| GCAGAACTGCACGGTATGTT+AGG | - | chr4.2:13331375-13331394 | None:intergenic | 50.0% | |
| GGTGGGAGGAAAGATTATGG+TGG | - | chr4.2:13331883-13331902 | None:intergenic | 50.0% | |
| GTGGCAAAATTGTGATCGCG+TGG | - | chr4.2:13332428-13332447 | None:intergenic | 50.0% | |
| GTGTGTCTTTCGCAGTCCTA+AGG | - | chr4.2:13331195-13331214 | None:intergenic | 50.0% | |
| GTTGCAAGGGATGTGCAAGT+GGG | + | chr4.2:13332513-13332532 | MS.gene08823:CDS | 50.0% | |
| GTTGGAATACTGGAGACCTG+GGG | - | chr4.2:13331770-13331789 | None:intergenic | 50.0% | |
| TACTCTGCACACACAAGTGG+TGG | - | chr4.2:13332447-13332466 | None:intergenic | 50.0% | |
| TCCCACCATCAGGATAGACT+AGG | + | chr4.2:13331896-13331915 | MS.gene08823:intron | 50.0% | |
| TCTCCAACCACACACACCTT+AGG | + | chr4.2:13331176-13331195 | MS.gene08823:intron | 50.0% | |
| TGACCTTTACCATCGGAGGA+AGG | + | chr4.2:13330861-13330880 | MS.gene08823:CDS | 50.0% | |
| TGCGTCCATTGTGGTTGCAA+GGG | + | chr4.2:13332500-13332519 | MS.gene08823:CDS | 50.0% | |
| TGGTACTCTGCACACACAAG+TGG | - | chr4.2:13332450-13332469 | None:intergenic | 50.0% | |
| TTCTCCTCCCTGAGTTGCTT+TGG | - | chr4.2:13332470-13332489 | None:intergenic | 50.0% | |
| TTGCAAGGGATGTGCAAGTG+GGG | + | chr4.2:13332514-13332533 | MS.gene08823:CDS | 50.0% | |
| ! | GCAGAGTACCAAAGCAACTC+AGG | + | chr4.2:13332459-13332478 | MS.gene08823:CDS | 50.0% |
| !! | TAGTCTATCCTGATGGTGGG+AGG | - | chr4.2:13331897-13331916 | None:intergenic | 50.0% |
| ATACTGGAGACCTGGGGTTG+TGG | - | chr4.2:13331764-13331783 | None:intergenic | 55.0% | |
| CACTAGATTCCCACAACCCC+AGG | + | chr4.2:13331751-13331770 | MS.gene08823:intron | 55.0% | |
| CCTTGAAGTTCGCGGAGTGT+CGG | - | chr4.2:13330617-13330636 | None:intergenic | 55.0% | |
| GGTTGCAAGGGATGTGCAAG+TGG | + | chr4.2:13332512-13332531 | MS.gene08823:CDS | 55.0% | |
| GTGCGTCCATTGTGGTTGCA+AGG | + | chr4.2:13332499-13332518 | MS.gene08823:CDS | 55.0% | |
| TACTGGAGACCTGGGGTTGT+GGG | - | chr4.2:13331763-13331782 | None:intergenic | 55.0% | |
| TCGCAGTCCTAAGGTGTGTG+TGG | - | chr4.2:13331186-13331205 | None:intergenic | 55.0% | |
| CCGACACTCCGCGAACTTCA+AGG | + | chr4.2:13330614-13330633 | MS.gene08823:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 13330557 | 13332541 | 13330557 | ID=MS.gene08823 |
| chr4.2 | mRNA | 13330557 | 13332541 | 13330557 | ID=MS.gene08823.t1;Parent=MS.gene08823 |
| chr4.2 | exon | 13330557 | 13330650 | 13330557 | ID=MS.gene08823.t1.exon1;Parent=MS.gene08823.t1 |
| chr4.2 | CDS | 13330557 | 13330650 | 13330557 | ID=cds.MS.gene08823.t1;Parent=MS.gene08823.t1 |
| chr4.2 | exon | 13330773 | 13330960 | 13330773 | ID=MS.gene08823.t1.exon2;Parent=MS.gene08823.t1 |
| chr4.2 | CDS | 13330773 | 13330960 | 13330773 | ID=cds.MS.gene08823.t1;Parent=MS.gene08823.t1 |
| chr4.2 | exon | 13332386 | 13332541 | 13332386 | ID=MS.gene08823.t1.exon3;Parent=MS.gene08823.t1 |
| chr4.2 | CDS | 13332386 | 13332541 | 13332386 | ID=cds.MS.gene08823.t1;Parent=MS.gene08823.t1 |
| Gene Sequence |
| Protein sequence |
