AlfalfaGEDB | MS.gene08909

M. sativa cultivar XinJiangDaYe / MS.gene08909

KEGG: -
GO: GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0007165 GO:0008150 GO:0009987 GO:0035556 GO:0050789 GO:0050794 GO:0065007 GO:0097159 GO:0140110 GO:1901363
PFAM: PF00072.27 PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08909.t1	XP_013446511.1	89.2	546	47	3	1	542	1	538	3.60E-274	953.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08909.t1	Q5N6V8	58.9	341	127	5	24	356	5	340	2.6e-100	367.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08909.t1	A0A072TUL7	89.2	546	47	3	1	542	1	538	2.6e-274	953.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene08909.t1	TF	GARP-ARR-B

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene017790	MS.gene08909	PPI
MS.gene08909	MS.gene39123	PPI
MS.gene08909	MS.gene014035	PPI
MS.gene38806	MS.gene08909	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08909.t1	MTR_8g079940	89.194	546	47	3	1	542	1	538	0.0	994
MS.gene08909.t1	MTR_3g086100	62.238	572	164	10	12	542	1	561	0.0	656
MS.gene08909.t1	MTR_3g086100	59.800	500	150	9	84	542	1	490	0.0	544
MS.gene08909.t1	MTR_1g032570	57.249	269	110	2	25	288	11	279	1.79e-95	303
MS.gene08909.t1	MTR_4g121020	59.690	258	100	1	23	276	29	286	5.22e-93	298
MS.gene08909.t1	MTR_4g121020	59.690	258	100	1	23	276	29	286	5.26e-93	298
MS.gene08909.t1	MTR_2g034960	57.143	252	106	1	23	274	27	276	1.33e-87	282
MS.gene08909.t1	MTR_3g106220	54.373	263	108	2	23	276	6	265	1.81e-86	280
MS.gene08909.t1	MTR_1g013170	55.303	264	96	4	23	274	3	256	8.29e-81	261
MS.gene08909.t1	MTR_4g131600	51.984	252	112	4	23	271	18	263	3.98e-78	257

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08909.t1	AT1G67710	49.299	499	199	15	26	507	8	469	8.63e-126	379
MS.gene08909.t1	AT1G67710	45.125	441	188	15	84	507	1	404	2.08e-90	285
MS.gene08909.t1	AT3G16857	53.289	304	115	7	22	302	30	329	1.40e-86	281
MS.gene08909.t1	AT3G16857	53.289	304	115	7	22	302	30	329	2.86e-86	281
MS.gene08909.t1	AT2G01760	52.416	269	107	4	20	273	2	264	1.98e-82	262
MS.gene08909.t1	AT2G25180	54.826	259	103	2	22	274	10	260	6.30e-82	267
MS.gene08909.t1	AT2G01760	47.475	297	107	5	20	273	2	292	4.23e-76	246
MS.gene08909.t1	AT4G31920	50.943	265	104	4	22	280	10	254	3.22e-75	248
MS.gene08909.t1	AT1G67710	42.280	421	189	15	104	507	12	395	1.01e-73	241
MS.gene08909.t1	AT3G16857	52.290	262	98	7	64	302	2	259	1.21e-67	230

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Find 85 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACCAAGATTTAATCT+TGG	0.410977	4.4:-16871565	MS.gene08909:CDS
AAAATTCAAATGGATACTAC+AGG	0.527020	4.4:-16872003	MS.gene08909:CDS
AAAGATAAGAAAGAGTTCAG+AGG	0.625719	4.4:-16871938	MS.gene08909:CDS
AAAGCATCAAGGTGTGGAGA+AGG	0.568756	4.4:+16874067	None:intergenic
AAATGAACTTAATGAAGAAA+AGG	0.469526	4.4:-16872839	MS.gene08909:CDS
AAATGTTGCTAGTCACTTGC+AGG	0.372643	4.4:-16872449	MS.gene08909:intron
AAGAGAATTTGAAAGTCTCG+AGG	0.633493	4.4:-16872928	MS.gene08909:CDS
AAGTTCGATCTACGAGTTCT+TGG	0.327718	4.4:+16872790	None:intergenic
AAGTTTAAGTCCTCGTCCAA+AGG	0.599539	4.4:+16871478	None:intergenic
AATACCGGCTATACTTGAGT+AGG	0.620491	4.4:-16872182	MS.gene08909:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGATAAGAAAGAGTTCAG+AGG	-	chr4.4:16873531-16873550	MS.gene08909:intron	30.0%
ATGCAACCAAGATTAAATCT+TGG	+	chr4.4:16873913-16873932	None:intergenic	30.0%
ATTAGAAGCCAACAAAAATG+TGG	+	chr4.4:16871659-16871678	None:intergenic	30.0%
CATATTCACCTTGTAACAAA+AGG	+	chr4.4:16874017-16874036	None:intergenic	30.0%
CTCTTACACAAAAGATATGA+TGG	+	chr4.4:16872912-16872931	None:intergenic	30.0%
GAACACACTTGTACAATTAA+AGG	-	chr4.4:16873666-16873685	MS.gene08909:intron	30.0%
GGAATTCACTTAATGAGAAA+TGG	-	chr4.4:16872563-16872582	MS.gene08909:intron	30.0%
GTACCTACTAGTAATATTCT+TGG	-	chr4.4:16872269-16872288	MS.gene08909:intron	30.0%
GTAGATTTATTTAGTGTGCT+TGG	+	chr4.4:16872842-16872861	None:intergenic	30.0%
GTGTAACATTTAATGGCAAA+TGG	+	chr4.4:16873702-16873721	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	16871351	16874140	16871351	ID=MS.gene08909
chr4.4	mRNA	16871351	16874140	16871351	ID=MS.gene08909.t1;Parent=MS.gene08909
chr4.4	exon	16873978	16874140	16873978	ID=MS.gene08909.t1.exon1;Parent=MS.gene08909.t1
chr4.4	CDS	16873978	16874140	16873978	ID=cds.MS.gene08909.t1;Parent=MS.gene08909.t1
chr4.4	exon	16873303	16873455	16873303	ID=MS.gene08909.t1.exon2;Parent=MS.gene08909.t1
chr4.4	CDS	16873303	16873455	16873303	ID=cds.MS.gene08909.t1;Parent=MS.gene08909.t1
chr4.4	exon	16872709	16873089	16872709	ID=MS.gene08909.t1.exon3;Parent=MS.gene08909.t1
chr4.4	CDS	16872709	16873089	16872709	ID=cds.MS.gene08909.t1;Parent=MS.gene08909.t1
chr4.4	exon	16872450	16872526	16872450	ID=MS.gene08909.t1.exon4;Parent=MS.gene08909.t1
chr4.4	CDS	16872450	16872526	16872450	ID=cds.MS.gene08909.t1;Parent=MS.gene08909.t1
chr4.4	exon	16871351	16872205	16871351	ID=MS.gene08909.t1.exon5;Parent=MS.gene08909.t1
chr4.4	CDS	16871351	16872205	16871351	ID=cds.MS.gene08909.t1;Parent=MS.gene08909.t1

Gene Sequence

>MS.gene08909

ATGGTACACAACAGGTCTCTTGTCTATGACAACATGGATAATTCTTGCTTTCCTTCTCCACACCTTGATGCTTTTCCAGCTGGTCTACGAGTTCTCGTTGTTGATGATGATCTAACTTGGCTCAGAATCCTTGAAAAAATGCTAAAAAAATGCTTTTACCGAGGTTTCTTTCTTTCATTCATATTCACTCTGCTTCTTCTTCCATGTGCTAAAAGTGGTATATATGAATCTGACTGAATTAATCTCAACAAATGCCAATAAGTTCAGTACAATTCAACTTTAAGAAAAGCAAGCATTTCACCAATCCACATTTTTGTTGGCTTCTAATTTCCAATTCCTTTTTTTTTTTTCAAAGAAAAAATGAATCTTGTTACTTGTTCATTTAAGATAATTTTGTACTAACCAATAACGCTAGCTAGGATGAGATGATAATACTGGTTTCTTTTAACTTAATTAACAAAGGTGTTTAAATTCACACTCATAACAACGTTAAAGCTATTGAAGAAGAGTTTTACGACTCATGTGTCTTATTTGGTTCGAGATATTAGTCTTAATAGCTGCGTGATGGGATACCTAATTTATACTAAAAAAAAACTTCAAAGCTGTTTTTTCTTAAATTTGCAAATTTTGGAAGCAAACACATCTTATATTTATCTTCTAACAGTTATCTATCATGTGCTCTCAGTGACCACATGTTGCTTAGCAATAGAGGCTCTTAAGAAGCTCCGCGAAAGTAAAGATGCATATGACATAGTGATCAGCGATGTAAACATGCCTGACATGGATGGTTTCAAGCTTCTTGAACATGTTGGACTTGAGATGGATCTTCCTGTCATTAGTAAGTTCTTTTATTAATAACATTTTCGCTTCAAATTATGTGTAACATTCCTCTCCCAGCTCTTTTTTCCGGACCAGTCAGTACCTACTAGTAATATTCTTGGTCCGAAAAAAAAAGCTAGAAGACAAGTGTTACAATATATGTACATAATCTTTTGATTTTATTGACTAAAATTCCATTATTTTACAAACAACACTTGATAATGTTATGCAGTGATGTCTGTTGATGGAGAAACAAGCAGGGTGATGAAAGGTGTTCAACATGGAGCATGTGATTATTTGCTTAAGCCTATAAGGATGAAAGAATTGCGAAACATATGGCAACATGTCTTAAGAAAAAGAATACATGAGGCAAGAGAATTTGAAAGTCTCGAGGGAATTCACTTAATGAGAAATGGATCAGATCACACTGATGATGGTAACATGTTTGCTGTAGGAAAAGAAATGAACTTAATGAAGAAAAGGAAAAATTTCGATAGTAAACATGATGACCAAGAACTCGTAGATCGAACTTTCATAAAGAAAGCTAGAGTAGTTTGGTCTGTGGATCTTCATCAGAAGTTTGTTAAAGCTGTGAATCAACTTGGATTCGATAGTAAGTTTCTTATCAACATTCTCTATGCAGTCACATTCAAATAAATCTACTCATTGCCAAGCACACTAAATAAATCTACTTTTATCATATTATTGTTCTTGTTAATTTTATGTATGAAGTTATGAACCATCATATCTTTTGTGTAAGAGAATGTAATGATAAAAATAATTTCTTTTTGGCAGAAGTTGGTCCCAAGAAAATTCTAGATTTGATGAATGTTCCGTGGCTGACTAGAGAAAATGTTGCTAGTCACTTGCAGGTATATGATTTGTATTTGTGAACCTCTACTAAAGTTAAAAGTTTATATTATGAGTATTGCATCTGATATGTTGTTTCTGTTAGGCCTAGAACTAGAAGGCTAGTAGGGGTTCAATTTAAATTAAGCATCCAATACACATCTCAGAAATATTGACATAAATGCAGACTATCTTATAAAATTCAAATTGAATAAATTTTGAGTTTGAAAACTTACAGGTTCCTAATAATAAAATTTTGCTCTTCAGAAATACCGGCTATACTTGAGTAGGTTGCAAAAGAAAAATGATCAGAAATTGTCCTCAGGTAGAATAAAGCATTCAGATTTACCTTCAAAAGATCCAGGATGTTTAAGCTTTCTCAACTCTTTCAGCAAGCAACAAAACGAAGGTGCAATCGATAGTTTTGGATATTCAGATGGGACATTAAAAATTCAAATGGATACTACAGGTCATGGAAAAAGAAGAGCTTCAACTAGTGAAATTTCTGATCCAAAGATAAGAAAGAGTTCAGAGGTAGGTCTTAACCAATCTCTGGAATCAGAAGTAAACCATACAGCATTTGACTCCACCATACCAACACAGTACTCTTGGAATGAAGTTTCTAAAACGCCACTCGAAGAAGAACAGAACACACTTGTACAATTAAAGGATAGCTTCAGCCATTTGCCATTAAATGTTACACAGCAACACTTCCAAATTGACCAATCACTTTCAATTAATTCCAATCCCTCCGATTACAAGAATGATTACATTAGTCCTGTGAATTCATCGGTGTCTTCAGTTGATACCTTTCCTAGTCAGTCCAAAAGCCTCATCTCAAATGATCAATCTCCTGATATCATTTTAACTTCAAATTTGAGTTCAAAAACACCAAGATTTAATCTTGGTTGCATTTATGATATGGAAATCTACCAAAGAAACTTACTTTTGGGTATTGAGTCAGCTTCCACACCTTTGGACGAGGACTTAAACTTCCTTTTGTTACAAGGTGAATATGATATGAACTTTGACATGCAGAATATAGAGATGTCAGAGTATTATGATCCAAGGTTTATTGCTGAAGTTCCTACCAATTTGTATGCTTCAGCAGATTATTCTTAG

Protein sequence

>MS.gene08909.t1

MVHNRSLVYDNMDNSCFPSPHLDAFPAGLRVLVVDDDLTWLRILEKMLKKCFYRVTTCCLAIEALKKLRESKDAYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKRIHEAREFESLEGIHLMRNGSDHTDDGNMFAVGKEMNLMKKRKNFDSKHDDQELVDRTFIKKARVVWSVDLHQKFVKAVNQLGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKKNDQKLSSGRIKHSDLPSKDPGCLSFLNSFSKQQNEGAIDSFGYSDGTLKIQMDTTGHGKRRASTSEISDPKIRKSSEVGLNQSLESEVNHTAFDSTIPTQYSWNEVSKTPLEEEQNTLVQLKDSFSHLPLNVTQQHFQIDQSLSINSNPSDYKNDYISPVNSSVSSVDTFPSQSKSLISNDQSPDIILTSNLSSKTPRFNLGCIYDMEIYQRNLLLGIESASTPLDEDLNFLLLQGEYDMNFDMQNIEMSEYYDPRFIAEVPTNLYASADYS