Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08959.t1 | XP_004504355.1 | 95.4 | 326 | 15 | 0 | 4 | 329 | 64 | 389 | 3.40E-179 | 637.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08959.t1 | P23569 | 91.1 | 326 | 29 | 0 | 4 | 329 | 64 | 389 | 6.8e-176 | 617.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08959.t1 | A0A1S2YG89 | 95.4 | 326 | 15 | 0 | 4 | 329 | 64 | 389 | 2.5e-179 | 637.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050444 | MS.gene08959 | 0.800111 | 1.68E-48 | -1.69E-46 |
| MS.gene052870 | MS.gene08959 | 0.814889 | 1.22E-51 | -1.69E-46 |
| MS.gene052872 | MS.gene08959 | 0.816546 | 5.23E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08959.t1 | MTR_3g083910 | 93.231 | 325 | 22 | 0 | 4 | 328 | 64 | 388 | 0.0 | 631 |
| MS.gene08959.t1 | MTR_3g083920 | 92.000 | 325 | 26 | 0 | 4 | 328 | 64 | 388 | 0.0 | 625 |
| MS.gene08959.t1 | MTR_7g016700 | 89.571 | 326 | 34 | 0 | 4 | 329 | 64 | 389 | 0.0 | 617 |
| MS.gene08959.t1 | MTR_5g007730 | 89.264 | 326 | 35 | 0 | 4 | 329 | 64 | 389 | 0.0 | 616 |
| MS.gene08959.t1 | MTR_7g016800 | 89.264 | 326 | 35 | 0 | 4 | 329 | 64 | 389 | 0.0 | 616 |
| MS.gene08959.t1 | MTR_5g007713 | 88.957 | 326 | 36 | 0 | 4 | 329 | 64 | 389 | 0.0 | 615 |
| MS.gene08959.t1 | MTR_1g098140 | 89.264 | 326 | 35 | 0 | 4 | 329 | 64 | 389 | 0.0 | 615 |
| MS.gene08959.t1 | MTR_7g016820 | 89.264 | 326 | 35 | 0 | 4 | 329 | 64 | 389 | 0.0 | 615 |
| MS.gene08959.t1 | MTR_7g016720 | 89.264 | 326 | 35 | 0 | 4 | 329 | 64 | 389 | 0.0 | 614 |
| MS.gene08959.t1 | MTR_5g007717 | 88.344 | 326 | 38 | 0 | 4 | 329 | 64 | 389 | 0.0 | 613 |
| MS.gene08959.t1 | MTR_1g097935 | 88.957 | 326 | 36 | 0 | 4 | 329 | 64 | 389 | 0.0 | 613 |
| MS.gene08959.t1 | MTR_1g097910 | 88.650 | 326 | 37 | 0 | 4 | 329 | 64 | 389 | 0.0 | 612 |
| MS.gene08959.t1 | MTR_7g016780 | 88.650 | 326 | 37 | 0 | 4 | 329 | 64 | 389 | 0.0 | 610 |
| MS.gene08959.t1 | MTR_5g007760 | 88.037 | 326 | 39 | 0 | 4 | 329 | 64 | 389 | 0.0 | 608 |
| MS.gene08959.t1 | MTR_7g084300 | 85.276 | 326 | 48 | 0 | 4 | 329 | 64 | 389 | 0.0 | 583 |
| MS.gene08959.t1 | MTR_2g058470 | 83.436 | 326 | 54 | 0 | 4 | 329 | 64 | 389 | 0.0 | 579 |
| MS.gene08959.t1 | MTR_7g113405 | 88.449 | 303 | 35 | 0 | 27 | 329 | 1 | 303 | 0.0 | 561 |
| MS.gene08959.t1 | MTR_3g086260 | 81.538 | 325 | 60 | 0 | 4 | 328 | 64 | 388 | 0.0 | 553 |
| MS.gene08959.t1 | MTR_5g007740 | 77.301 | 326 | 74 | 0 | 4 | 329 | 1 | 326 | 0.0 | 529 |
| MS.gene08959.t1 | MTR_3g088675 | 70.859 | 326 | 95 | 0 | 4 | 329 | 64 | 389 | 1.50e-179 | 502 |
| MS.gene08959.t1 | MTR_5g007723 | 69.325 | 326 | 72 | 2 | 4 | 329 | 101 | 398 | 1.74e-162 | 459 |
| MS.gene08959.t1 | MTR_5g007770 | 74.333 | 300 | 44 | 2 | 10 | 309 | 1 | 267 | 3.42e-162 | 453 |
| MS.gene08959.t1 | MTR_3g088670 | 48.649 | 333 | 159 | 6 | 5 | 328 | 59 | 388 | 1.33e-108 | 322 |
| MS.gene08959.t1 | MTR_4g075560 | 43.425 | 327 | 179 | 3 | 5 | 328 | 66 | 389 | 1.66e-89 | 273 |
| MS.gene08959.t1 | MTR_4g078730 | 40.557 | 323 | 186 | 1 | 5 | 327 | 73 | 389 | 9.49e-89 | 271 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08959.t1 | AT5G13930 | 85.802 | 324 | 45 | 1 | 5 | 327 | 70 | 393 | 0.0 | 576 |
| MS.gene08959.t1 | AT4G34850 | 41.896 | 327 | 187 | 2 | 5 | 329 | 67 | 392 | 3.87e-87 | 267 |
| MS.gene08959.t1 | AT4G34850 | 42.188 | 320 | 182 | 2 | 12 | 329 | 1 | 319 | 2.78e-86 | 263 |
| MS.gene08959.t1 | AT4G00040 | 43.252 | 326 | 176 | 4 | 5 | 327 | 66 | 385 | 4.60e-86 | 264 |
| MS.gene08959.t1 | AT1G02050 | 43.077 | 325 | 178 | 3 | 5 | 327 | 73 | 392 | 1.00e-80 | 251 |
| MS.gene08959.t1 | AT3G52160 | 28.216 | 241 | 157 | 9 | 90 | 327 | 97 | 324 | 4.71e-13 | 69.3 |
| MS.gene08959.t1 | AT3G52160 | 29.388 | 245 | 149 | 11 | 90 | 327 | 210 | 437 | 7.79e-13 | 69.3 |
Find 91 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAAATGTGTTGAGTAATTA+TGG | 0.159032 | 4.4:-14758259 | MS.gene08959:CDS |
| AGATATACCCAAAGGTTTAA+AGG | 0.245773 | 4.4:+14758384 | None:intergenic |
| TGTGGCTAGTCCATTGTCTT+TGG | 0.261386 | 4.4:+14758183 | None:intergenic |
| CTGATTATAACTCAATCTTT+TGG | 0.272111 | 4.4:-14758363 | MS.gene08959:CDS |
| TGGGGTGTGTTGTTTGGTTT+TGG | 0.276522 | 4.4:-14758142 | MS.gene08959:CDS |
| CTTGAATGGGGTGTGTTGTT+TGG | 0.296451 | 4.4:-14758148 | MS.gene08959:CDS |
| GGTTGAAGCCTTTAAACCTT+TGG | 0.319052 | 4.4:-14758392 | MS.gene08959:CDS |
| GTTGAAGCCTTTAAACCTTT+GGG | 0.337605 | 4.4:-14758391 | MS.gene08959:CDS |
| TCAATAGCTCCTTCACTATC+AGG | 0.344839 | 4.4:+14758499 | None:intergenic |
| TGCCATGTAAGCACACATAT+TGG | 0.349143 | 4.4:+14758999 | None:intergenic |
| TCTTCGTTTGGCTAAAGATT+TGG | 0.349738 | 4.4:-14758731 | MS.gene08959:CDS |
| CTTGTGGGACAAGCCTTGTT+TGG | 0.358463 | 4.4:-14758616 | MS.gene08959:CDS |
| AGATGAGTGATCTTGGACTT+TGG | 0.383652 | 4.4:+14758883 | None:intergenic |
| ACGAGCACCTTTATTGTTCT+CGG | 0.386732 | 4.4:+14758708 | None:intergenic |
| CTTCGTAGTGTTGCTGTTTG+AGG | 0.394685 | 4.4:-14758091 | None:intergenic |
| GTCAAGAATCGCTGGTCCAC+CGG | 0.403855 | 4.4:+14758330 | None:intergenic |
| TGGTGGTACGGTTCTTCGTT+TGG | 0.404129 | 4.4:-14758743 | MS.gene08959:CDS |
| CAACTGGTGAAGGGCTTGAA+TGG | 0.407695 | 4.4:-14758162 | MS.gene08959:CDS |
| AACTGGTGAAGGGCTTGAAT+GGG | 0.413901 | 4.4:-14758161 | MS.gene08959:CDS |
| AACAAAAGCGATCAAGGAAT+GGG | 0.414224 | 4.4:-14758911 | MS.gene08959:CDS |
| TGCTTACATGGCACCATCAT+TGG | 0.429205 | 4.4:-14758989 | MS.gene08959:CDS |
| GCCATGTAAGCACACATATT+GGG | 0.431280 | 4.4:+14759000 | None:intergenic |
| GACCAAGTTGAGGACAAGTT+AGG | 0.432585 | 4.4:-14758310 | MS.gene08959:CDS |
| AAAGATGAGATGAGTGATCT+TGG | 0.440160 | 4.4:+14758876 | None:intergenic |
| GACAATGGACTAGCCACAAC+TGG | 0.454448 | 4.4:-14758178 | MS.gene08959:CDS |
| TCCCAATATGTGTGCTTACA+TGG | 0.455956 | 4.4:-14759001 | MS.gene08959:CDS |
| GGTCTCTCAACCTCAGGTAA+TGG | 0.456340 | 4.4:+14758559 | None:intergenic |
| GATTTGGCCGAGAACAATAA+AGG | 0.458828 | 4.4:-14758715 | MS.gene08959:CDS |
| CACCAGCAAAACACCCTTGT+TGG | 0.461998 | 4.4:+14758761 | None:intergenic |
| CATCTTCTCAAGGATGTGCC+TGG | 0.465539 | 4.4:-14758445 | MS.gene08959:CDS |
| TCAAGAATCGCTGGTCCACC+GGG | 0.466810 | 4.4:+14758331 | None:intergenic |
| GAAATGTGTTGAGTAATTAT+GGG | 0.467565 | 4.4:-14758258 | MS.gene08959:CDS |
| ATATTCTTTGAGATAAGTCC+AGG | 0.468877 | 4.4:+14758427 | None:intergenic |
| AAAGAATATCGAAAAGGCCT+TGG | 0.477216 | 4.4:-14758413 | MS.gene08959:CDS |
| AGCAGCAACAAAAGCGATCA+AGG | 0.478551 | 4.4:-14758917 | MS.gene08959:CDS |
| CAGGCACATCCTTGAGAAGA+TGG | 0.483610 | 4.4:+14758446 | None:intergenic |
| ACCCATCTTGATAGTCTTGT+GGG | 0.484612 | 4.4:-14758631 | MS.gene08959:CDS |
| GATAGTGAAGGAGCTATTGA+TGG | 0.490775 | 4.4:-14758496 | MS.gene08959:CDS |
| TTCAAGCCCTTCACCAGTTG+TGG | 0.497493 | 4.4:+14758165 | None:intergenic |
| GTAGTAGAGGTACCAAGGTT+AGG | 0.498294 | 4.4:-14758946 | MS.gene08959:CDS |
| AACCTAACTTGTCCTCAACT+TGG | 0.500607 | 4.4:+14758308 | None:intergenic |
| CAACAAAAGCGATCAAGGAA+TGG | 0.503536 | 4.4:-14758912 | MS.gene08959:CDS |
| GGCGCTGCTGCTGTGATCGT+TGG | 0.504753 | 4.4:-14758589 | MS.gene08959:CDS |
| ATCACTGCAGTCACATTTCG+TGG | 0.507660 | 4.4:-14758664 | MS.gene08959:CDS |
| AACAAAGGTCTCTCAACCTC+AGG | 0.508792 | 4.4:+14758553 | None:intergenic |
| TCTGTTAAATACATGTATGT+TGG | 0.509093 | 4.4:+14759042 | None:intergenic |
| CTATCAAGATGGGTGTCACT+AGG | 0.518069 | 4.4:+14758640 | None:intergenic |
| GACCTTTGTTTGAGTTAGTG+TGG | 0.519425 | 4.4:-14758540 | MS.gene08959:CDS |
| TATCTCAAAGAATATCGAAA+AGG | 0.521856 | 4.4:-14758419 | MS.gene08959:CDS |
| GGACTAGCCACAACTGGTGA+AGG | 0.523410 | 4.4:-14758172 | MS.gene08959:CDS |
| TCAACTTGGTCAAGAATCGC+TGG | 0.535204 | 4.4:+14758322 | None:intergenic |
| TATCAGCTCACAAAATTGCT+AGG | 0.538946 | 4.4:-14758817 | MS.gene08959:CDS |
| TCTTGCCTTGCATCCAATGA+TGG | 0.539914 | 4.4:+14758976 | None:intergenic |
| AGGTTTAAAGGCTTCAACCA+AGG | 0.540344 | 4.4:+14758396 | None:intergenic |
| GTCCCACAAGACTATCAAGA+TGG | 0.540528 | 4.4:+14758629 | None:intergenic |
| TAAAGGTGCTCGTGTTCTTG+TGG | 0.544940 | 4.4:-14758698 | MS.gene08959:CDS |
| GATGGTCACCTTCGCGAGGT+TGG | 0.549915 | 4.4:-14758478 | MS.gene08959:CDS |
| ACAGTCTCAACAGTAAGTCC+AGG | 0.551294 | 4.4:+14758118 | None:intergenic |
| CACCCATCTTGATAGTCTTG+TGG | 0.559465 | 4.4:-14758632 | MS.gene08959:CDS |
| GGACAAGCCTTGTTTGGAGA+TGG | 0.567510 | 4.4:-14758610 | MS.gene08959:CDS |
| GCAAGACATGGTGGTAGTAG+AGG | 0.569686 | 4.4:-14758959 | MS.gene08959:CDS |
| CGTTATATGATGTACCAACA+AGG | 0.574165 | 4.4:-14758775 | MS.gene08959:CDS |
| ATCATATAACGTTTCACTGA+CGG | 0.577798 | 4.4:+14758787 | None:intergenic |
| GTGAGCTGATAATCAGCACC+AGG | 0.579712 | 4.4:+14758829 | None:intergenic |
| ACTAACGTTCCATCTTCTCA+AGG | 0.580112 | 4.4:-14758455 | MS.gene08959:CDS |
| TGGCACCATCATTGGATGCA+AGG | 0.580252 | 4.4:-14758981 | MS.gene08959:CDS |
| ACTAGTGGTGTGGATATGCC+TGG | 0.593754 | 4.4:-14758847 | MS.gene08959:CDS |
| AGAAAGAAGTCCAAAGACAA+TGG | 0.595443 | 4.4:-14758193 | MS.gene08959:CDS |
| AGCAGCGCCATCTCCAAACA+AGG | 0.603893 | 4.4:+14758603 | None:intergenic |
| TGGTTCAGATCCATTACCTG+AGG | 0.605510 | 4.4:-14758569 | MS.gene08959:CDS |
| GACTAGCCACAACTGGTGAA+GGG | 0.607161 | 4.4:-14758171 | MS.gene08959:CDS |
| GTCCACACTAACTCAAACAA+AGG | 0.609914 | 4.4:+14758538 | None:intergenic |
| TCCCACAAGACTATCAAGAT+GGG | 0.611475 | 4.4:+14758630 | None:intergenic |
| AGCGATTCTTGACCAAGTTG+AGG | 0.611679 | 4.4:-14758320 | MS.gene08959:CDS |
| ATTACTCAACACATTTCGAG+TGG | 0.621388 | 4.4:+14758264 | None:intergenic |
| ATTGGATGCAAGGCAAGACA+TGG | 0.621464 | 4.4:-14758971 | MS.gene08959:CDS |
| TATTGATGGTCACCTTCGCG+AGG | 0.623303 | 4.4:-14758482 | MS.gene08959:CDS |
| AGGCATATCCACACCACTAG+TGG | 0.631547 | 4.4:+14758849 | None:intergenic |
| TAGCTCCTTCACTATCAGGA+AGG | 0.639577 | 4.4:+14758503 | None:intergenic |
| TCACTGCAGTCACATTTCGT+GGG | 0.640496 | 4.4:-14758663 | MS.gene08959:CDS |
| ACAATCCTTCCTGATAGTGA+AGG | 0.644822 | 4.4:-14758508 | MS.gene08959:CDS |
| CAGTCTCAACAGTAAGTCCA+GGG | 0.652785 | 4.4:+14758119 | None:intergenic |
| ACGTTAGTCCAACCTCGCGA+AGG | 0.653377 | 4.4:+14758470 | None:intergenic |
| TTATAATCAGATATACCCAA+AGG | 0.655709 | 4.4:+14758376 | None:intergenic |
| AACATACATGTATTTAACAG+AGG | 0.656379 | 4.4:-14759040 | MS.gene08959:CDS |
| ACAAAAGCGATCAAGGAATG+GGG | 0.673405 | 4.4:-14758910 | MS.gene08959:CDS |
| TGGTGGTAGTAGAGGTACCA+AGG | 0.673508 | 4.4:-14758951 | MS.gene08959:CDS |
| ACTGGTGAAGGGCTTGAATG+GGG | 0.679248 | 4.4:-14758160 | MS.gene08959:CDS |
| GTTATATGATGTACCAACAA+GGG | 0.680098 | 4.4:-14758774 | MS.gene08959:CDS |
| GGATGCAAGGCAAGACATGG+TGG | 0.685874 | 4.4:-14758968 | MS.gene08959:CDS |
| CAAGAATCGCTGGTCCACCG+GGG | 0.742378 | 4.4:+14758332 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AACATACATGTATTTAACAG+AGG | - | chr4.4:14758113-14758132 | MS.gene08959:CDS | 25.0% |
| ! | GAAATGTGTTGAGTAATTAT+GGG | - | chr4.4:14758895-14758914 | MS.gene08959:CDS | 25.0% |
| ! | TATCTCAAAGAATATCGAAA+AGG | - | chr4.4:14758734-14758753 | MS.gene08959:CDS | 25.0% |
| ! | TCTGTTAAATACATGTATGT+TGG | + | chr4.4:14758114-14758133 | None:intergenic | 25.0% |
| ! | TTATAATCAGATATACCCAA+AGG | + | chr4.4:14758780-14758799 | None:intergenic | 25.0% |
| !! | CTGATTATAACTCAATCTTT+TGG | - | chr4.4:14758790-14758809 | MS.gene08959:CDS | 25.0% |
| AGATATACCCAAAGGTTTAA+AGG | + | chr4.4:14758772-14758791 | None:intergenic | 30.0% | |
| ATCATATAACGTTTCACTGA+CGG | + | chr4.4:14758369-14758388 | None:intergenic | 30.0% | |
| CGAAATGTGTTGAGTAATTA+TGG | - | chr4.4:14758894-14758913 | MS.gene08959:CDS | 30.0% | |
| GTTATATGATGTACCAACAA+GGG | - | chr4.4:14758379-14758398 | MS.gene08959:CDS | 30.0% | |
| !! | ATATTCTTTGAGATAAGTCC+AGG | + | chr4.4:14758729-14758748 | None:intergenic | 30.0% |
| AAAGAATATCGAAAAGGCCT+TGG | - | chr4.4:14758740-14758759 | MS.gene08959:CDS | 35.0% | |
| AAAGATGAGATGAGTGATCT+TGG | + | chr4.4:14758280-14758299 | None:intergenic | 35.0% | |
| AACAAAAGCGATCAAGGAAT+GGG | - | chr4.4:14758242-14758261 | MS.gene08959:CDS | 35.0% | |
| AGAAAGAAGTCCAAAGACAA+TGG | - | chr4.4:14758960-14758979 | MS.gene08959:CDS | 35.0% | |
| ATTACTCAACACATTTCGAG+TGG | + | chr4.4:14758892-14758911 | None:intergenic | 35.0% | |
| CGTTATATGATGTACCAACA+AGG | - | chr4.4:14758378-14758397 | MS.gene08959:CDS | 35.0% | |
| GTTGAAGCCTTTAAACCTTT+GGG | - | chr4.4:14758762-14758781 | MS.gene08959:CDS | 35.0% | |
| TATCAGCTCACAAAATTGCT+AGG | - | chr4.4:14758336-14758355 | MS.gene08959:CDS | 35.0% | |
| TCTTCGTTTGGCTAAAGATT+TGG | - | chr4.4:14758422-14758441 | MS.gene08959:CDS | 35.0% | |
| ! | AGGTTTGAAGCCTGAAAAAT+TGG | - | chr4.4:14758863-14758882 | MS.gene08959:CDS | 35.0% |
| ACAAAAGCGATCAAGGAATG+GGG | - | chr4.4:14758243-14758262 | MS.gene08959:CDS | 40.0% | |
| ACGAGCACCTTTATTGTTCT+CGG | + | chr4.4:14758448-14758467 | None:intergenic | 40.0% | |
| ACTAACGTTCCATCTTCTCA+AGG | - | chr4.4:14758698-14758717 | MS.gene08959:CDS | 40.0% | |
| AGATGAGTGATCTTGGACTT+TGG | + | chr4.4:14758273-14758292 | None:intergenic | 40.0% | |
| AGGTTTAAAGGCTTCAACCA+AGG | + | chr4.4:14758760-14758779 | None:intergenic | 40.0% | |
| CAACAAAAGCGATCAAGGAA+TGG | - | chr4.4:14758241-14758260 | MS.gene08959:CDS | 40.0% | |
| GATAGTGAAGGAGCTATTGA+TGG | - | chr4.4:14758657-14758676 | MS.gene08959:CDS | 40.0% | |
| GATTTGGCCGAGAACAATAA+AGG | - | chr4.4:14758438-14758457 | MS.gene08959:CDS | 40.0% | |
| GCCATGTAAGCACACATATT+GGG | + | chr4.4:14758156-14758175 | None:intergenic | 40.0% | |
| GGTTGAAGCCTTTAAACCTT+TGG | - | chr4.4:14758761-14758780 | MS.gene08959:CDS | 40.0% | |
| GTCCACACTAACTCAAACAA+AGG | + | chr4.4:14758618-14758637 | None:intergenic | 40.0% | |
| TCAATAGCTCCTTCACTATC+AGG | + | chr4.4:14758657-14758676 | None:intergenic | 40.0% | |
| TCCCAATATGTGTGCTTACA+TGG | - | chr4.4:14758152-14758171 | MS.gene08959:CDS | 40.0% | |
| TCCCACAAGACTATCAAGAT+GGG | + | chr4.4:14758526-14758545 | None:intergenic | 40.0% | |
| TGCCATGTAAGCACACATAT+TGG | + | chr4.4:14758157-14758176 | None:intergenic | 40.0% | |
| ! | AACCTAACTTGTCCTCAACT+TGG | + | chr4.4:14758848-14758867 | None:intergenic | 40.0% |
| ! | ACAATCCTTCCTGATAGTGA+AGG | - | chr4.4:14758645-14758664 | MS.gene08959:CDS | 40.0% |
| ! | CTCATCTTTTGTACCACTAG+TGG | - | chr4.4:14758291-14758310 | MS.gene08959:CDS | 40.0% |
| ! | GACCTTTGTTTGAGTTAGTG+TGG | - | chr4.4:14758613-14758632 | MS.gene08959:CDS | 40.0% |
| !! | ACCCATCTTGATAGTCTTGT+GGG | - | chr4.4:14758522-14758541 | MS.gene08959:CDS | 40.0% |
| AACAAAGGTCTCTCAACCTC+AGG | + | chr4.4:14758603-14758622 | None:intergenic | 45.0% | |
| AACTGGTGAAGGGCTTGAAT+GGG | - | chr4.4:14758992-14759011 | MS.gene08959:CDS | 45.0% | |
| ACAGTCTCAACAGTAAGTCC+AGG | + | chr4.4:14759038-14759057 | None:intergenic | 45.0% | |
| AGCAGCAACAAAAGCGATCA+AGG | - | chr4.4:14758236-14758255 | MS.gene08959:CDS | 45.0% | |
| AGCGATTCTTGACCAAGTTG+AGG | - | chr4.4:14758833-14758852 | MS.gene08959:CDS | 45.0% | |
| ATCACTGCAGTCACATTTCG+TGG | - | chr4.4:14758489-14758508 | MS.gene08959:CDS | 45.0% | |
| ATTGGATGCAAGGCAAGACA+TGG | - | chr4.4:14758182-14758201 | MS.gene08959:CDS | 45.0% | |
| CAGTCTCAACAGTAAGTCCA+GGG | + | chr4.4:14759037-14759056 | None:intergenic | 45.0% | |
| GTCCCACAAGACTATCAAGA+TGG | + | chr4.4:14758527-14758546 | None:intergenic | 45.0% | |
| TAGCTCCTTCACTATCAGGA+AGG | + | chr4.4:14758653-14758672 | None:intergenic | 45.0% | |
| TCAACTTGGTCAAGAATCGC+TGG | + | chr4.4:14758834-14758853 | None:intergenic | 45.0% | |
| TCACTGCAGTCACATTTCGT+GGG | - | chr4.4:14758490-14758509 | MS.gene08959:CDS | 45.0% | |
| TCTTGCCTTGCATCCAATGA+TGG | + | chr4.4:14758180-14758199 | None:intergenic | 45.0% | |
| TGCTTACATGGCACCATCAT+TGG | - | chr4.4:14758164-14758183 | MS.gene08959:CDS | 45.0% | |
| TGGTTCAGATCCATTACCTG+AGG | - | chr4.4:14758584-14758603 | MS.gene08959:CDS | 45.0% | |
| ! | ATCTTTTGGATTGCTCACCC+CGG | - | chr4.4:14758804-14758823 | MS.gene08959:CDS | 45.0% |
| ! | CACCCATCTTGATAGTCTTG+TGG | - | chr4.4:14758521-14758540 | MS.gene08959:CDS | 45.0% |
| ! | CGAGTGGCTTCCAATTTTTC+AGG | + | chr4.4:14758876-14758895 | None:intergenic | 45.0% |
| ! | CTTGAATGGGGTGTGTTGTT+TGG | - | chr4.4:14759005-14759024 | MS.gene08959:CDS | 45.0% |
| ! | CTTTTGTACCACTAGTGGTG+TGG | - | chr4.4:14758296-14758315 | MS.gene08959:CDS | 45.0% |
| ! | GACCAAGTTGAGGACAAGTT+AGG | - | chr4.4:14758843-14758862 | MS.gene08959:CDS | 45.0% |
| ! | GCTGCTTCTTTTCCTAACCT+TGG | + | chr4.4:14758222-14758241 | None:intergenic | 45.0% |
| ! | TGTGGCTAGTCCATTGTCTT+TGG | + | chr4.4:14758973-14758992 | None:intergenic | 45.0% |
| !! | CTATCAAGATGGGTGTCACT+AGG | + | chr4.4:14758516-14758535 | None:intergenic | 45.0% |
| !! | GTAGTAGAGGTACCAAGGTT+AGG | - | chr4.4:14758207-14758226 | MS.gene08959:CDS | 45.0% |
| !! | TAAAGGTGCTCGTGTTCTTG+TGG | - | chr4.4:14758455-14758474 | MS.gene08959:CDS | 45.0% |
| !!! | TACCAACAAGGGTGTTTTGC+TGG | - | chr4.4:14758390-14758409 | MS.gene08959:CDS | 45.0% |
| !!! | TGGGGTGTGTTGTTTGGTTT+TGG | - | chr4.4:14759011-14759030 | MS.gene08959:CDS | 45.0% |
| ACTAGTGGTGTGGATATGCC+TGG | - | chr4.4:14758306-14758325 | MS.gene08959:CDS | 50.0% | |
| ACTGGTGAAGGGCTTGAATG+GGG | - | chr4.4:14758993-14759012 | MS.gene08959:CDS | 50.0% | |
| AGGCATATCCACACCACTAG+TGG | + | chr4.4:14758307-14758326 | None:intergenic | 50.0% | |
| CAACTGGTGAAGGGCTTGAA+TGG | - | chr4.4:14758991-14759010 | MS.gene08959:CDS | 50.0% | |
| CACCAGCAAAACACCCTTGT+TGG | + | chr4.4:14758395-14758414 | None:intergenic | 50.0% | |
| CAGGCACATCCTTGAGAAGA+TGG | + | chr4.4:14758710-14758729 | None:intergenic | 50.0% | |
| CATCTTCTCAAGGATGTGCC+TGG | - | chr4.4:14758708-14758727 | MS.gene08959:CDS | 50.0% | |
| GCAAGACATGGTGGTAGTAG+AGG | - | chr4.4:14758194-14758213 | MS.gene08959:CDS | 50.0% | |
| GGTCTCTCAACCTCAGGTAA+TGG | + | chr4.4:14758597-14758616 | None:intergenic | 50.0% | |
| GTGAGCTGATAATCAGCACC+AGG | + | chr4.4:14758327-14758346 | None:intergenic | 50.0% | |
| TGGCACCATCATTGGATGCA+AGG | - | chr4.4:14758172-14758191 | MS.gene08959:CDS | 50.0% | |
| TGGTGGTACGGTTCTTCGTT+TGG | - | chr4.4:14758410-14758429 | MS.gene08959:CDS | 50.0% | |
| TTCAAGCCCTTCACCAGTTG+TGG | + | chr4.4:14758991-14759010 | None:intergenic | 50.0% | |
| ! | GACTAGCCACAACTGGTGAA+GGG | - | chr4.4:14758982-14759001 | MS.gene08959:CDS | 50.0% |
| ! | TATTGATGGTCACCTTCGCG+AGG | - | chr4.4:14758671-14758690 | MS.gene08959:CDS | 50.0% |
| !! | AGGGTGTTTTGCTGGTGGTA+CGG | - | chr4.4:14758398-14758417 | MS.gene08959:CDS | 50.0% |
| !! | CTTGTGGGACAAGCCTTGTT+TGG | - | chr4.4:14758537-14758556 | MS.gene08959:CDS | 50.0% |
| !! | GACAATGGACTAGCCACAAC+TGG | - | chr4.4:14758975-14758994 | MS.gene08959:CDS | 50.0% |
| !! | GGACAAGCCTTGTTTGGAGA+TGG | - | chr4.4:14758543-14758562 | MS.gene08959:CDS | 50.0% |
| !! | TGGTGGTAGTAGAGGTACCA+AGG | - | chr4.4:14758202-14758221 | MS.gene08959:CDS | 50.0% |
| !!! | CAACAAGGGTGTTTTGCTGG+TGG | - | chr4.4:14758393-14758412 | MS.gene08959:CDS | 50.0% |
| !!! | GTGTTGTTTGGTTTTGGCCC+TGG | - | chr4.4:14759017-14759036 | MS.gene08959:CDS | 50.0% |
| ACGTTAGTCCAACCTCGCGA+AGG | + | chr4.4:14758686-14758705 | None:intergenic | 55.0% | |
| AGCAGCGCCATCTCCAAACA+AGG | + | chr4.4:14758553-14758572 | None:intergenic | 55.0% | |
| GGATGCAAGGCAAGACATGG+TGG | - | chr4.4:14758185-14758204 | MS.gene08959:CDS | 55.0% | |
| GTCAAGAATCGCTGGTCCAC+CGG | + | chr4.4:14758826-14758845 | None:intergenic | 55.0% | |
| TCAAGAATCGCTGGTCCACC+GGG | + | chr4.4:14758825-14758844 | None:intergenic | 55.0% | |
| ! | TTTTGGATTGCTCACCCCGG+TGG | - | chr4.4:14758807-14758826 | MS.gene08959:CDS | 55.0% |
| !! | GGACTAGCCACAACTGGTGA+AGG | - | chr4.4:14758981-14759000 | MS.gene08959:CDS | 55.0% |
| CAAGAATCGCTGGTCCACCG+GGG | + | chr4.4:14758824-14758843 | None:intergenic | 60.0% | |
| GATGGTCACCTTCGCGAGGT+TGG | - | chr4.4:14758675-14758694 | MS.gene08959:CDS | 60.0% | |
| GGCGCTGCTGCTGTGATCGT+TGG | - | chr4.4:14758564-14758583 | MS.gene08959:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 14758093 | 14759082 | 14758093 | ID=MS.gene08959 |
| chr4.4 | mRNA | 14758093 | 14759082 | 14758093 | ID=MS.gene08959.t1;Parent=MS.gene08959 |
| chr4.4 | exon | 14758093 | 14759082 | 14758093 | ID=MS.gene08959.t1.exon1;Parent=MS.gene08959.t1 |
| chr4.4 | CDS | 14758093 | 14759082 | 14758093 | ID=cds.MS.gene08959.t1;Parent=MS.gene08959.t1 |
| Gene Sequence |
| Protein sequence |
