Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09121.t1 | XP_003606349.2 | 94 | 301 | 18 | 0 | 1 | 301 | 1 | 301 | 1.20E-138 | 502.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09121.t1 | Q0WTB8 | 42.6 | 101 | 58 | 0 | 26 | 126 | 21 | 121 | 1.3e-11 | 72.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09121.t1 | G7JNB6 | 94.0 | 301 | 18 | 0 | 1 | 301 | 1 | 301 | 8.7e-139 | 502.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05157 | MS.gene09121 | 0.803662 | 3.13E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene09121 | 0.801485 | 8.81E-49 | -1.69E-46 |
| MS.gene059154 | MS.gene09121 | 0.81182 | 5.78E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09121.t1 | MTR_4g057530 | 97.342 | 301 | 8 | 0 | 1 | 301 | 1 | 301 | 0.0 | 598 |
| MS.gene09121.t1 | MTR_1g090657 | 38.614 | 101 | 59 | 1 | 202 | 299 | 295 | 395 | 8.95e-13 | 68.6 |
| MS.gene09121.t1 | MTR_1g090657 | 29.915 | 234 | 143 | 7 | 13 | 241 | 41 | 258 | 3.04e-11 | 63.9 |
| MS.gene09121.t1 | MTR_1g090657 | 38.614 | 101 | 59 | 1 | 202 | 299 | 279 | 379 | 9.40e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09121.t1 | AT3G44960 | 37.543 | 293 | 146 | 9 | 8 | 289 | 2 | 268 | 3.85e-35 | 128 |
| MS.gene09121.t1 | AT3G44960 | 38.514 | 296 | 140 | 12 | 8 | 289 | 2 | 269 | 1.03e-33 | 124 |
| MS.gene09121.t1 | AT3G44960 | 36.610 | 295 | 151 | 11 | 8 | 289 | 2 | 273 | 2.90e-31 | 118 |
| MS.gene09121.t1 | AT5G04320 | 44.211 | 95 | 53 | 0 | 32 | 126 | 3 | 97 | 1.15e-16 | 80.5 |
| MS.gene09121.t1 | AT5G04320 | 44.211 | 95 | 53 | 0 | 32 | 126 | 27 | 121 | 1.55e-16 | 80.1 |
| MS.gene09121.t1 | AT5G04320 | 44.211 | 95 | 53 | 0 | 32 | 126 | 27 | 121 | 1.55e-16 | 80.1 |
| MS.gene09121.t1 | AT5G04320 | 44.211 | 95 | 53 | 0 | 32 | 126 | 27 | 121 | 1.55e-16 | 80.1 |
| MS.gene09121.t1 | AT5G04320 | 52.941 | 68 | 32 | 0 | 59 | 126 | 3 | 70 | 2.20e-15 | 76.3 |
Find 40 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAGGGCTGCTTTGATTAA+TGG | 0.208431 | 4.1:+40829550 | MS.gene09121:CDS |
| CTTCTCATCTTGATATTTAG+AGG | 0.230253 | 4.1:-40831450 | None:intergenic |
| CGAAAATTTGTTTGAGATAG+AGG | 0.305892 | 4.1:+40831260 | MS.gene09121:CDS |
| TGCATCATTATCACAATTAC+AGG | 0.349513 | 4.1:+40830257 | MS.gene09121:CDS |
| AGAAACTTCAAATGCAAAAC+TGG | 0.350795 | 4.1:+40828880 | MS.gene09121:CDS |
| GAAGCACCAAGGCATTCTTT+TGG | 0.363233 | 4.1:+40831378 | MS.gene09121:CDS |
| TTCCATTCAACAACTCCTTA+AGG | 0.396046 | 4.1:+40828399 | MS.gene09121:CDS |
| GCCGACGGAGAATCAGAAAA+TGG | 0.397671 | 4.1:+40828261 | MS.gene09121:CDS |
| TTTCGAGAGGTTCGTGTACA+TGG | 0.401775 | 4.1:-40831242 | None:intergenic |
| ATTTAGAGGAACCTCTTTGT+AGG | 0.408254 | 4.1:-40831436 | None:intergenic |
| AACCGCTAACATGAGACTAT+TGG | 0.409768 | 4.1:-40828916 | None:intergenic |
| CAATATGCTATCACTCAATC+TGG | 0.413239 | 4.1:+40831288 | MS.gene09121:CDS |
| CATCATCATTGCTAACTCTA+GGG | 0.441625 | 4.1:-40830409 | None:intergenic |
| TACCTTAAGGAGTTGTTGAA+TGG | 0.445466 | 4.1:-40828401 | None:intergenic |
| AAGAAAAGGTTAAAGACAAT+AGG | 0.449030 | 4.1:+40830599 | MS.gene09121:CDS |
| TCATCATCATTGCTAACTCT+AGG | 0.463822 | 4.1:-40830410 | None:intergenic |
| TGAACAGTAAAATGATAGAA+AGG | 0.482472 | 4.1:+40828820 | MS.gene09121:intron |
| GTTTGACCAGGAGACGCGTT+AGG | 0.490458 | 4.1:+40830444 | MS.gene09121:CDS |
| AAAGAATAAAAGCAAAGAAA+AGG | 0.491272 | 4.1:+40830585 | MS.gene09121:CDS |
| CCATCTGTGAAAACTGAAAG+AGG | 0.498909 | 4.1:+40831333 | MS.gene09121:CDS |
| GGAGATAGACACTGAGAAAG+TGG | 0.499538 | 4.1:+40830215 | MS.gene09121:CDS |
| GTTGCGAAGGGCAGCTGAGA+AGG | 0.508038 | 4.1:+40831407 | MS.gene09121:CDS |
| GTCCAATAGTCTCATGTTAG+CGG | 0.514665 | 4.1:+40828914 | MS.gene09121:CDS |
| AGAGGAACCTCTTTGTAGGA+TGG | 0.515473 | 4.1:-40831432 | None:intergenic |
| TCTACTCCTAACGCGTCTCC+TGG | 0.523467 | 4.1:-40830450 | None:intergenic |
| TGCAGGAGCTTAACTTGGGG+AGG | 0.533630 | 4.1:+40829390 | MS.gene09121:intron |
| TGGAAACACCTTCAAAATGC+AGG | 0.544169 | 4.1:+40829570 | MS.gene09121:CDS |
| TTCTCAGCTGCCCTTCGCAA+CGG | 0.546920 | 4.1:-40831405 | None:intergenic |
| ATCATCATTGCTAACTCTAG+GGG | 0.552896 | 4.1:-40830408 | None:intergenic |
| CTCTAAATATCAAGATGAGA+AGG | 0.558638 | 4.1:+40831451 | MS.gene09121:CDS |
| GCAGGAGCTTAACTTGGGGA+GGG | 0.566011 | 4.1:+40829391 | MS.gene09121:intron |
| GGTCTTCCAAAAGAATGCCT+TGG | 0.584014 | 4.1:-40831384 | None:intergenic |
| AAGGATACTTTCTATCCGCA+AGG | 0.600223 | 4.1:-40828511 | None:intergenic |
| AGTAAAATGATAGAAAGGAG+TGG | 0.612385 | 4.1:+40828825 | MS.gene09121:intron |
| AAAATGGCGAAGAAATCGAT+CGG | 0.644350 | 4.1:+40828277 | MS.gene09121:CDS |
| GAATTTAATCAACCTCCTTG+CGG | 0.647090 | 4.1:+40828496 | MS.gene09121:CDS |
| GAAGGTTCCATCCTACAAAG+AGG | 0.659677 | 4.1:+40831425 | MS.gene09121:CDS |
| GATACTTTCTATCCGCAAGG+AGG | 0.691506 | 4.1:-40828508 | None:intergenic |
| GTTTAAGAAATGAAGCACCA+AGG | 0.696649 | 4.1:+40831367 | MS.gene09121:CDS |
| GGTACTAACTAACATGCCGA+CGG | 0.717552 | 4.1:+40828246 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAATTTATATATTAAA+AGG | + | chr4.1:40829210-40829229 | MS.gene09121:intron | 0.0% |
| !!! | AAAACTGATTTTAATATTTT+TGG | - | chr4.1:40829718-40829737 | None:intergenic | 10.0% |
| !!! | AATCATAATTTAAAATAACA+TGG | - | chr4.1:40829936-40829955 | None:intergenic | 10.0% |
| !!! | ACTTTTTAATTTGATTTAAA+CGG | + | chr4.1:40829486-40829505 | MS.gene09121:intron | 10.0% |
| !!! | TCAATTTAAAATAATGAAAA+AGG | - | chr4.1:40828533-40828552 | None:intergenic | 10.0% |
| !! | AAAAAATTGAGATGATTATA+CGG | - | chr4.1:40829121-40829140 | None:intergenic | 15.0% |
| !! | ATAAATTTGACAAATATGTT+AGG | + | chr4.1:40829238-40829257 | MS.gene09121:intron | 15.0% |
| !! | TAAATTTGACAAATATGTTA+GGG | + | chr4.1:40829239-40829258 | MS.gene09121:intron | 15.0% |
| !! | TTTATTAATGTATCTTTCAA+TGG | + | chr4.1:40829981-40830000 | MS.gene09121:intron | 15.0% |
| !!! | TTTTTCTTTGTTGTATAATT+TGG | + | chr4.1:40830347-40830366 | MS.gene09121:intron | 15.0% |
| !! | AAAGAATAAAAGCAAAGAAA+AGG | + | chr4.1:40830585-40830604 | MS.gene09121:CDS | 20.0% |
| !! | TATACAACAAAGAAAAAATG+AGG | - | chr4.1:40830344-40830363 | None:intergenic | 20.0% |
| !! | TGAAAAATTGTTGTATGAAT+AGG | + | chr4.1:40830658-40830677 | MS.gene09121:intron | 20.0% |
| !!! | AATATATCATATTGACTTTG+AGG | + | chr4.1:40829330-40829349 | MS.gene09121:intron | 20.0% |
| !!! | ACTGATTTTAATATTTTTGG+AGG | - | chr4.1:40829715-40829734 | None:intergenic | 20.0% |
| !!! | ATATATCATATTGACTTTGA+GGG | + | chr4.1:40829331-40829350 | MS.gene09121:intron | 20.0% |
| !!! | CATAATTTAAAATAACATGG+TGG | - | chr4.1:40829933-40829952 | None:intergenic | 20.0% |
| !!! | TTATTAGTTTTTGTTTGTGA+AGG | + | chr4.1:40828759-40828778 | MS.gene09121:intron | 20.0% |
| ! | AAGAAAAGGTTAAAGACAAT+AGG | + | chr4.1:40830599-40830618 | MS.gene09121:CDS | 25.0% |
| ! | AATATGAGAAATATAGGTGA+AGG | - | chr4.1:40830299-40830318 | None:intergenic | 25.0% |
| ! | AATTGCATAAGAAACTTATG+AGG | + | chr4.1:40830864-40830883 | MS.gene09121:intron | 25.0% |
| ! | ATAAGATGAACTTCAATAGT+GGG | + | chr4.1:40829746-40829765 | MS.gene09121:intron | 25.0% |
| ! | ATATGAGAAATATAGGTGAA+GGG | - | chr4.1:40830298-40830317 | None:intergenic | 25.0% |
| ! | CACATAAGTATATAGTGATA+TGG | + | chr4.1:40830957-40830976 | MS.gene09121:intron | 25.0% |
| ! | CATATCACTATATACTTATG+TGG | - | chr4.1:40830959-40830978 | None:intergenic | 25.0% |
| ! | CATGTGTTAATAGCATTTAA+TGG | + | chr4.1:40831016-40831035 | MS.gene09121:intron | 25.0% |
| ! | CTAATATTGAATTCTGTTAC+AGG | + | chr4.1:40828466-40828485 | MS.gene09121:intron | 25.0% |
| ! | GCAAAATAAGTTAATGAAGA+AGG | - | chr4.1:40830495-40830514 | None:intergenic | 25.0% |
| ! | GTTAATCTTTCCATAAAGAA+GGG | - | chr4.1:40829911-40829930 | None:intergenic | 25.0% |
| ! | TATAAGATGAACTTCAATAG+TGG | + | chr4.1:40829745-40829764 | MS.gene09121:intron | 25.0% |
| ! | TCTATTATTTCCCTTCTTTA+TGG | + | chr4.1:40829898-40829917 | MS.gene09121:intron | 25.0% |
| ! | TCTTATGAAGTTTAACAATG+TGG | + | chr4.1:40830017-40830036 | MS.gene09121:intron | 25.0% |
| ! | TGAACAGTAAAATGATAGAA+AGG | + | chr4.1:40828820-40828839 | MS.gene09121:intron | 25.0% |
| ! | TTACTGTTCAAACTAAATCA+AGG | - | chr4.1:40828810-40828829 | None:intergenic | 25.0% |
| ! | TTCACCTATATTTCTCATAT+TGG | + | chr4.1:40830298-40830317 | MS.gene09121:intron | 25.0% |
| !! | AAACTTGGTAACTAAAAATC+AGG | - | chr4.1:40829608-40829627 | None:intergenic | 25.0% |
| !! | ATAATCAATTCGAGTTCAAA+AGG | - | chr4.1:40829456-40829475 | None:intergenic | 25.0% |
| !! | CAATTTTTCATATTATGCTG+CGG | - | chr4.1:40830648-40830667 | None:intergenic | 25.0% |
| !! | TAATCAATTCGAGTTCAAAA+GGG | - | chr4.1:40829455-40829474 | None:intergenic | 25.0% |
| !! | TCTTTGTTGTATAATTTGGT+TGG | + | chr4.1:40830351-40830370 | MS.gene09121:intron | 25.0% |
| !! | TTTCTTATGGTTAATTTTGC+AGG | + | chr4.1:40829373-40829392 | MS.gene09121:intron | 25.0% |
| !!! | TACTGATTTTGTGTTTCTTA+TGG | + | chr4.1:40829360-40829379 | MS.gene09121:intron | 25.0% |
| !!! | TGATAATGATGCATTCTTTT+CGG | - | chr4.1:40830250-40830269 | None:intergenic | 25.0% |
| AAAATATTGAAATTGCGCTG+TGG | + | chr4.1:40828693-40828712 | MS.gene09121:intron | 30.0% | |
| AACAGAAACTCAATTACACA+AGG | - | chr4.1:40828720-40828739 | None:intergenic | 30.0% | |
| AATGCATGTGATTTACCTTA+AGG | - | chr4.1:40828417-40828436 | None:intergenic | 30.0% | |
| AGAAACTTCAAATGCAAAAC+TGG | + | chr4.1:40828880-40828899 | MS.gene09121:CDS | 30.0% | |
| AGTAAAATGATAGAAAGGAG+TGG | + | chr4.1:40828825-40828844 | MS.gene09121:intron | 30.0% | |
| ATAACCTAAACACACAAACT+TGG | - | chr4.1:40829623-40829642 | None:intergenic | 30.0% | |
| ATTCGTGCATTTCATATCAA+CGG | - | chr4.1:40830928-40830947 | None:intergenic | 30.0% | |
| ATTGAGTTTCTGTTTCAAGA+AGG | + | chr4.1:40828726-40828745 | MS.gene09121:intron | 30.0% | |
| CTCTAAATATCAAGATGAGA+AGG | + | chr4.1:40831451-40831470 | MS.gene09121:CDS | 30.0% | |
| CTTAATGCGAAAAAGACTTT+CGG | + | chr4.1:40828303-40828322 | MS.gene09121:CDS | 30.0% | |
| CTTCTCATCTTGATATTTAG+AGG | - | chr4.1:40831453-40831472 | None:intergenic | 30.0% | |
| GAAAAGAAAAAGGAATTCTG+AGG | - | chr4.1:40829433-40829452 | None:intergenic | 30.0% | |
| GGTTAATCTTTCCATAAAGA+AGG | - | chr4.1:40829912-40829931 | None:intergenic | 30.0% | |
| GTGTTTATTTGAGTATGTGT+TGG | + | chr4.1:40828657-40828676 | MS.gene09121:intron | 30.0% | |
| GTTCAAAAGGGAAAAGAAAA+AGG | - | chr4.1:40829443-40829462 | None:intergenic | 30.0% | |
| TAATGGAAGACACTAATAGA+GGG | + | chr4.1:40831033-40831052 | MS.gene09121:intron | 30.0% | |
| TCACTATATACTTATGTGGT+AGG | - | chr4.1:40830955-40830974 | None:intergenic | 30.0% | |
| TCATTGTACTCGATCTAAAA+CGG | - | chr4.1:40830070-40830089 | None:intergenic | 30.0% | |
| TCTCAAATTATTACCTGTGT+CGG | + | chr4.1:40829064-40829083 | MS.gene09121:intron | 30.0% | |
| TGCATCATTATCACAATTAC+AGG | + | chr4.1:40830257-40830276 | MS.gene09121:CDS | 30.0% | |
| TGTATAGAAAGTTTGTCTCT+TGG | + | chr4.1:40829812-40829831 | MS.gene09121:intron | 30.0% | |
| TTAATGGAAGACACTAATAG+AGG | + | chr4.1:40831032-40831051 | MS.gene09121:intron | 30.0% | |
| TTATGAAACTTTGCAGCTAT+TGG | + | chr4.1:40830544-40830563 | MS.gene09121:intron | 30.0% | |
| TTGAGTTTCTGTTTCAAGAA+GGG | + | chr4.1:40828727-40828746 | MS.gene09121:intron | 30.0% | |
| TTGTAACGTGTCAGTAAAAA+TGG | - | chr4.1:40831060-40831079 | None:intergenic | 30.0% | |
| ! | AAAAACAATGTTGTTTGACC+AGG | + | chr4.1:40830432-40830451 | MS.gene09121:CDS | 30.0% |
| ! | CGAAAATTTGTTTGAGATAG+AGG | + | chr4.1:40831260-40831279 | MS.gene09121:CDS | 30.0% |
| ! | CTGAAACATGCAATTTTGTA+AGG | - | chr4.1:40829162-40829181 | None:intergenic | 30.0% |
| !! | ATCTCAAACAAATTTTCGAG+AGG | - | chr4.1:40831258-40831277 | None:intergenic | 30.0% |
| !!! | AAGTTTCTCTTTTTTTGCAC+AGG | + | chr4.1:40831184-40831203 | MS.gene09121:intron | 30.0% |
| AAAATGGCGAAGAAATCGAT+CGG | + | chr4.1:40828277-40828296 | MS.gene09121:CDS | 35.0% | |
| AAATAAACACACACAGAGAG+CGG | - | chr4.1:40828647-40828666 | None:intergenic | 35.0% | |
| AGTACAAATAGTGATGCTTG+AGG | + | chr4.1:40829276-40829295 | MS.gene09121:intron | 35.0% | |
| ATAGTCCTTGAATTGCGAAT+TGG | + | chr4.1:40830698-40830717 | MS.gene09121:intron | 35.0% | |
| ATAGTGATATGGTATCCAAG+TGG | + | chr4.1:40830968-40830987 | MS.gene09121:intron | 35.0% | |
| ATCATCATTGCTAACTCTAG+GGG | - | chr4.1:40830411-40830430 | None:intergenic | 35.0% | |
| ATGACAAAAATCACGTTTGG+AGG | + | chr4.1:40829645-40829664 | MS.gene09121:intron | 35.0% | |
| ATTTAGAGGAACCTCTTTGT+AGG | - | chr4.1:40831439-40831458 | None:intergenic | 35.0% | |
| ATTTGCCAATTCGCAATTCA+AGG | - | chr4.1:40830706-40830725 | None:intergenic | 35.0% | |
| CAATATGCTATCACTCAATC+TGG | + | chr4.1:40831288-40831307 | MS.gene09121:CDS | 35.0% | |
| CATCATCATTGCTAACTCTA+GGG | - | chr4.1:40830412-40830431 | None:intergenic | 35.0% | |
| CCAAATTCAGTGTATCAATG+TGG | + | chr4.1:40830091-40830110 | MS.gene09121:intron | 35.0% | |
| CCACATTGATACACTGAATT+TGG | - | chr4.1:40830094-40830113 | None:intergenic | 35.0% | |
| GAATTTAATCAACCTCCTTG+CGG | + | chr4.1:40828496-40828515 | MS.gene09121:CDS | 35.0% | |
| GCAATATAGGCCTAAAACAA+CGG | + | chr4.1:40830137-40830156 | MS.gene09121:intron | 35.0% | |
| GCATGTTTCAGTCTACTTTA+GGG | + | chr4.1:40829171-40829190 | MS.gene09121:intron | 35.0% | |
| GGCTCCAATATGAGAAATAT+AGG | - | chr4.1:40830305-40830324 | None:intergenic | 35.0% | |
| GTACAAATAGTGATGCTTGA+GGG | + | chr4.1:40829277-40829296 | MS.gene09121:intron | 35.0% | |
| GTGGTCATTCTATGTACAAA+CGG | + | chr4.1:40830036-40830055 | MS.gene09121:intron | 35.0% | |
| GTTACCAAGTTTGTGTGTTT+AGG | + | chr4.1:40829616-40829635 | MS.gene09121:intron | 35.0% | |
| TACAAATAGTGATGCTTGAG+GGG | + | chr4.1:40829278-40829297 | MS.gene09121:intron | 35.0% | |
| TACCTTAAGGAGTTGTTGAA+TGG | - | chr4.1:40828404-40828423 | None:intergenic | 35.0% | |
| TCATCATCATTGCTAACTCT+AGG | - | chr4.1:40830413-40830432 | None:intergenic | 35.0% | |
| TGAGGAATATCATCCATCAA+TGG | - | chr4.1:40830326-40830345 | None:intergenic | 35.0% | |
| TGAGTTTCTGTTTCAAGAAG+GGG | + | chr4.1:40828728-40828747 | MS.gene09121:intron | 35.0% | |
| TGCATGACAAAAATCACGTT+TGG | + | chr4.1:40829642-40829661 | MS.gene09121:intron | 35.0% | |
| TGCATGTTTCAGTCTACTTT+AGG | + | chr4.1:40829170-40829189 | MS.gene09121:intron | 35.0% | |
| TTCCATTCAACAACTCCTTA+AGG | + | chr4.1:40828399-40828418 | MS.gene09121:CDS | 35.0% | |
| TTGATCGATGCTCACAATTT+CGG | + | chr4.1:40831123-40831142 | MS.gene09121:intron | 35.0% | |
| ! | AATTTTGCAGGAGCTTAACT+TGG | + | chr4.1:40829385-40829404 | MS.gene09121:intron | 35.0% |
| ! | ATTTTGCAGGAGCTTAACTT+GGG | + | chr4.1:40829386-40829405 | MS.gene09121:intron | 35.0% |
| ! | GTTTAAGAAATGAAGCACCA+AGG | + | chr4.1:40831367-40831386 | MS.gene09121:CDS | 35.0% |
| ! | TGTATAATTTGGTTGGCTCA+AGG | + | chr4.1:40830358-40830377 | MS.gene09121:intron | 35.0% |
| AACCGCTAACATGAGACTAT+TGG | - | chr4.1:40828919-40828938 | None:intergenic | 40.0% | |
| AAGACTGCCAAAAATAGCGA+AGG | - | chr4.1:40830167-40830186 | None:intergenic | 40.0% | |
| AAGGATACTTTCTATCCGCA+AGG | - | chr4.1:40828514-40828533 | None:intergenic | 40.0% | |
| ACATTAGCCATAGATTCACG+TGG | - | chr4.1:40830827-40830846 | None:intergenic | 40.0% | |
| AGACTGCCAAAAATAGCGAA+GGG | - | chr4.1:40830166-40830185 | None:intergenic | 40.0% | |
| AGGCCTATATTGCACATTGT+AGG | - | chr4.1:40830130-40830149 | None:intergenic | 40.0% | |
| AGGTGAAGGGTTTATAGATC+AGG | - | chr4.1:40830285-40830304 | None:intergenic | 40.0% | |
| AGTGACACACTGCAACTTTA+GGG | - | chr4.1:40830733-40830752 | None:intergenic | 40.0% | |
| ATTCTATGTACAAACGGCCT+AGG | + | chr4.1:40830042-40830061 | MS.gene09121:intron | 40.0% | |
| CCATCTGTGAAAACTGAAAG+AGG | + | chr4.1:40831333-40831352 | MS.gene09121:CDS | 40.0% | |
| CCTATATTGCACATTGTAGG+GGG | - | chr4.1:40830127-40830146 | None:intergenic | 40.0% | |
| CTATATTGCACATTGTAGGG+GGG | - | chr4.1:40830126-40830145 | None:intergenic | 40.0% | |
| GACAAATATGTTAGGGACTG+TGG | + | chr4.1:40829246-40829265 | MS.gene09121:intron | 40.0% | |
| GCCTATATTGCACATTGTAG+GGG | - | chr4.1:40830128-40830147 | None:intergenic | 40.0% | |
| GCGACTCATGTTCGAAAATA+TGG | - | chr4.1:40828616-40828635 | None:intergenic | 40.0% | |
| GGCCTATATTGCACATTGTA+GGG | - | chr4.1:40830129-40830148 | None:intergenic | 40.0% | |
| GTCCAATAGTCTCATGTTAG+CGG | + | chr4.1:40828914-40828933 | MS.gene09121:CDS | 40.0% | |
| GTTGTTACAGTCTAGTGGTT+TGG | + | chr4.1:40828567-40828586 | MS.gene09121:intron | 40.0% | |
| TAGGAGTAGATGTAAGTGCT+GGG | + | chr4.1:40830463-40830482 | MS.gene09121:intron | 40.0% | |
| TCTCATATTGGAGCCATTGA+TGG | + | chr4.1:40830310-40830329 | MS.gene09121:intron | 40.0% | |
| TGATATGGTATCCAAGTGGA+TGG | + | chr4.1:40830972-40830991 | MS.gene09121:intron | 40.0% | |
| TGATCGATGCTCACAATTTC+GGG | + | chr4.1:40831124-40831143 | MS.gene09121:intron | 40.0% | |
| TGGAAACACCTTCAAAATGC+AGG | + | chr4.1:40829570-40829589 | MS.gene09121:CDS | 40.0% | |
| TTAGGAGTAGATGTAAGTGC+TGG | + | chr4.1:40830462-40830481 | MS.gene09121:intron | 40.0% | |
| TTCAATGCCATCACATGTGT+CGG | - | chr4.1:40829033-40829052 | None:intergenic | 40.0% | |
| TTTGATTGCTGCACTGCTTA+TGG | + | chr4.1:40829854-40829873 | MS.gene09121:intron | 40.0% | |
| ! | AAAGCACACCTGCATTTTGA+AGG | - | chr4.1:40829581-40829600 | None:intergenic | 40.0% |
| ! | AGGTTAGTTCTCACACTCAT+TGG | + | chr4.1:40830619-40830638 | MS.gene09121:intron | 40.0% |
| ! | CCTCTTTCAGTTTTCACAGA+TGG | - | chr4.1:40831336-40831355 | None:intergenic | 40.0% |
| ! | GCACTGACACTTCTTATCAA+AGG | + | chr4.1:40828966-40828985 | MS.gene09121:intron | 40.0% |
| ! | TTATGACGTGACTAGCCAAA+TGG | + | chr4.1:40830789-40830808 | MS.gene09121:intron | 40.0% |
| ! | TTCTAACAAACCCGTTTTGC+AGG | + | chr4.1:40830185-40830204 | MS.gene09121:intron | 40.0% |
| ! | TTTTGCACAGGAGAAGTTTG+AGG | + | chr4.1:40831196-40831215 | MS.gene09121:intron | 40.0% |
| !! | TTTTGCAGGAGCTTAACTTG+GGG | + | chr4.1:40829387-40829406 | MS.gene09121:intron | 40.0% |
| !!! | CTCCACTTTTTCCTGCAAAA+CGG | - | chr4.1:40830199-40830218 | None:intergenic | 40.0% |
| !!! | TCCACTTTTTCCTGCAAAAC+GGG | - | chr4.1:40830198-40830217 | None:intergenic | 40.0% |
| AAAGACACAAACACCGACAC+AGG | - | chr4.1:40829080-40829099 | None:intergenic | 45.0% | |
| ACCACTAGACTGTAACAACG+CGG | - | chr4.1:40828566-40828585 | None:intergenic | 45.0% | |
| AGAGGAACCTCTTTGTAGGA+TGG | - | chr4.1:40831435-40831454 | None:intergenic | 45.0% | |
| CCCCCTACAATGTGCAATAT+AGG | + | chr4.1:40830124-40830143 | MS.gene09121:intron | 45.0% | |
| CGAACATATGACCATCCACT+TGG | - | chr4.1:40830986-40831005 | None:intergenic | 45.0% | |
| GAAGGTTCCATCCTACAAAG+AGG | + | chr4.1:40831425-40831444 | MS.gene09121:CDS | 45.0% | |
| GAGTGACACACTGCAACTTT+AGG | - | chr4.1:40830734-40830753 | None:intergenic | 45.0% | |
| GATACTTTCTATCCGCAAGG+AGG | - | chr4.1:40828511-40828530 | None:intergenic | 45.0% | |
| GGAGATAGACACTGAGAAAG+TGG | + | chr4.1:40830215-40830234 | MS.gene09121:CDS | 45.0% | |
| GGTCTTCCAAAAGAATGCCT+TGG | - | chr4.1:40831387-40831406 | None:intergenic | 45.0% | |
| TAGCCATAGATTCACGTGGA+AGG | - | chr4.1:40830823-40830842 | None:intergenic | 45.0% | |
| TAGCCTTCCACGTGAATCTA+TGG | + | chr4.1:40830817-40830836 | MS.gene09121:intron | 45.0% | |
| TGGAAGGCTACATGTCCATT+TGG | - | chr4.1:40830807-40830826 | None:intergenic | 45.0% | |
| TTCAACACCGACACATGTGA+TGG | + | chr4.1:40829023-40829042 | MS.gene09121:intron | 45.0% | |
| TTTCGAGAGGTTCGTGTACA+TGG | - | chr4.1:40831245-40831264 | None:intergenic | 45.0% | |
| ! | ACCCGTTTTGCAGGAAAAAG+TGG | + | chr4.1:40830194-40830213 | MS.gene09121:intron | 45.0% |
| ! | CACTGCAGCATGAACTTTTG+TGG | + | chr4.1:40829530-40829549 | MS.gene09121:CDS | 45.0% |
| ! | GCAGCATGAACTTTTGTGGA+GGG | + | chr4.1:40829534-40829553 | MS.gene09121:CDS | 45.0% |
| ! | TGCAGCATGAACTTTTGTGG+AGG | + | chr4.1:40829533-40829552 | MS.gene09121:CDS | 45.0% |
| ! | TGGAGGGCTGCTTTGATTAA+TGG | + | chr4.1:40829550-40829569 | MS.gene09121:CDS | 45.0% |
| !! | GAAGCACCAAGGCATTCTTT+TGG | + | chr4.1:40831378-40831397 | MS.gene09121:CDS | 45.0% |
| !! | GCCATTTTCTGATTCTCCGT+CGG | - | chr4.1:40828265-40828284 | None:intergenic | 45.0% |
| !! | TTTTGGAAGACCGTTGCGAA+GGG | + | chr4.1:40831395-40831414 | MS.gene09121:CDS | 45.0% |
| CACGTCATAACCTCTAGCAG+CGG | - | chr4.1:40830779-40830798 | None:intergenic | 50.0% | |
| CCTCTAGCAGCGGATGTTAA+CGG | - | chr4.1:40830769-40830788 | None:intergenic | 50.0% | |
| GCCGACGGAGAATCAGAAAA+TGG | + | chr4.1:40828261-40828280 | MS.gene09121:CDS | 50.0% | |
| TAGCAGCGGATGTTAACGGA+TGG | - | chr4.1:40830765-40830784 | None:intergenic | 50.0% | |
| TCCGCGTTGTTACAGTCTAG+TGG | + | chr4.1:40828562-40828581 | MS.gene09121:intron | 50.0% | |
| ! | CTCGATCTAAAACGGCTCCT+AGG | - | chr4.1:40830062-40830081 | None:intergenic | 50.0% |
| !! | AGTCTAGTGGTTTGGCTCTG+AGG | + | chr4.1:40828575-40828594 | MS.gene09121:intron | 50.0% |
| !! | CGAAGGGAGACCGTTGTTTT+AGG | - | chr4.1:40830150-40830169 | None:intergenic | 50.0% |
| !! | CGGTCTCCCTTCGCTATTTT+TGG | + | chr4.1:40830157-40830176 | MS.gene09121:intron | 50.0% |
| !! | CTTTTGGAAGACCGTTGCGA+AGG | + | chr4.1:40831394-40831413 | MS.gene09121:CDS | 50.0% |
| CCGTTAACATCCGCTGCTAG+AGG | + | chr4.1:40830766-40830785 | MS.gene09121:intron | 55.0% | |
| GTGATGCTTGAGGGGCTGAA+TGG | + | chr4.1:40829286-40829305 | MS.gene09121:intron | 55.0% | |
| GTTTGACCAGGAGACGCGTT+AGG | + | chr4.1:40830444-40830463 | MS.gene09121:CDS | 55.0% | |
| TCTACTCCTAACGCGTCTCC+TGG | - | chr4.1:40830453-40830472 | None:intergenic | 55.0% | |
| TTCTCAGCTGCCCTTCGCAA+CGG | - | chr4.1:40831408-40831427 | None:intergenic | 55.0% | |
| ! | GCAGGAGCTTAACTTGGGGA+GGG | + | chr4.1:40829391-40829410 | MS.gene09121:intron | 55.0% |
| ! | TGCAGGAGCTTAACTTGGGG+AGG | + | chr4.1:40829390-40829409 | MS.gene09121:intron | 55.0% |
| GTTGCGAAGGGCAGCTGAGA+AGG | + | chr4.1:40831407-40831426 | MS.gene09121:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 40828259 | 40831482 | 40828259 | ID=MS.gene09121 |
| chr4.1 | mRNA | 40828259 | 40831482 | 40828259 | ID=MS.gene09121.t1;Parent=MS.gene09121 |
| chr4.1 | exon | 40828259 | 40828420 | 40828259 | ID=MS.gene09121.t1.exon1;Parent=MS.gene09121.t1 |
| chr4.1 | CDS | 40828259 | 40828420 | 40828259 | ID=cds.MS.gene09121.t1;Parent=MS.gene09121.t1 |
| chr4.1 | exon | 40828488 | 40828525 | 40828488 | ID=MS.gene09121.t1.exon2;Parent=MS.gene09121.t1 |
| chr4.1 | CDS | 40828488 | 40828525 | 40828488 | ID=cds.MS.gene09121.t1;Parent=MS.gene09121.t1 |
| chr4.1 | exon | 40828827 | 40828935 | 40828827 | ID=MS.gene09121.t1.exon3;Parent=MS.gene09121.t1 |
| chr4.1 | CDS | 40828827 | 40828935 | 40828827 | ID=cds.MS.gene09121.t1;Parent=MS.gene09121.t1 |
| chr4.1 | exon | 40829395 | 40829418 | 40829395 | ID=MS.gene09121.t1.exon4;Parent=MS.gene09121.t1 |
| chr4.1 | CDS | 40829395 | 40829418 | 40829395 | ID=cds.MS.gene09121.t1;Parent=MS.gene09121.t1 |
| chr4.1 | exon | 40829523 | 40829591 | 40829523 | ID=MS.gene09121.t1.exon5;Parent=MS.gene09121.t1 |
| chr4.1 | CDS | 40829523 | 40829591 | 40829523 | ID=cds.MS.gene09121.t1;Parent=MS.gene09121.t1 |
| chr4.1 | exon | 40830207 | 40830278 | 40830207 | ID=MS.gene09121.t1.exon6;Parent=MS.gene09121.t1 |
| chr4.1 | CDS | 40830207 | 40830278 | 40830207 | ID=cds.MS.gene09121.t1;Parent=MS.gene09121.t1 |
| chr4.1 | exon | 40830380 | 40830473 | 40830380 | ID=MS.gene09121.t1.exon7;Parent=MS.gene09121.t1 |
| chr4.1 | CDS | 40830380 | 40830473 | 40830380 | ID=cds.MS.gene09121.t1;Parent=MS.gene09121.t1 |
| chr4.1 | exon | 40830560 | 40830620 | 40830560 | ID=MS.gene09121.t1.exon8;Parent=MS.gene09121.t1 |
| chr4.1 | CDS | 40830560 | 40830620 | 40830560 | ID=cds.MS.gene09121.t1;Parent=MS.gene09121.t1 |
| chr4.1 | exon | 40831206 | 40831482 | 40831206 | ID=MS.gene09121.t1.exon9;Parent=MS.gene09121.t1 |
| chr4.1 | CDS | 40831206 | 40831482 | 40831206 | ID=cds.MS.gene09121.t1;Parent=MS.gene09121.t1 |
| Gene Sequence |
| Protein sequence |
