Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09285.t1 | XP_004504355.1 | 95.1 | 370 | 18 | 0 | 1 | 370 | 20 | 389 | 1.00E-203 | 719.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09285.t1 | P24826 | 93.0 | 370 | 25 | 1 | 1 | 370 | 20 | 388 | 6.2e-202 | 704.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09285.t1 | A0A1S2YG89 | 95.1 | 370 | 18 | 0 | 1 | 370 | 20 | 389 | 7.3e-204 | 719.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052870 | MS.gene09285 | 0.818557 | 1.84E-52 | -1.69E-46 |
| MS.gene052872 | MS.gene09285 | 0.818035 | 2.42E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09285.t1 | MTR_3g083910 | 92.412 | 369 | 28 | 0 | 1 | 369 | 20 | 388 | 0.0 | 716 |
| MS.gene09285.t1 | MTR_3g083920 | 90.515 | 369 | 35 | 0 | 1 | 369 | 20 | 388 | 0.0 | 706 |
| MS.gene09285.t1 | MTR_7g016700 | 87.838 | 370 | 45 | 0 | 1 | 370 | 20 | 389 | 0.0 | 696 |
| MS.gene09285.t1 | MTR_5g007730 | 87.568 | 370 | 46 | 0 | 1 | 370 | 20 | 389 | 0.0 | 695 |
| MS.gene09285.t1 | MTR_7g016800 | 87.568 | 370 | 46 | 0 | 1 | 370 | 20 | 389 | 0.0 | 694 |
| MS.gene09285.t1 | MTR_1g098140 | 87.568 | 370 | 46 | 0 | 1 | 370 | 20 | 389 | 0.0 | 694 |
| MS.gene09285.t1 | MTR_5g007713 | 87.297 | 370 | 47 | 0 | 1 | 370 | 20 | 389 | 0.0 | 693 |
| MS.gene09285.t1 | MTR_7g016720 | 87.568 | 370 | 46 | 0 | 1 | 370 | 20 | 389 | 0.0 | 692 |
| MS.gene09285.t1 | MTR_7g016820 | 87.297 | 370 | 47 | 0 | 1 | 370 | 20 | 389 | 0.0 | 691 |
| MS.gene09285.t1 | MTR_5g007760 | 87.027 | 370 | 48 | 0 | 1 | 370 | 20 | 389 | 0.0 | 691 |
| MS.gene09285.t1 | MTR_1g097935 | 87.297 | 370 | 47 | 0 | 1 | 370 | 20 | 389 | 0.0 | 691 |
| MS.gene09285.t1 | MTR_1g097910 | 87.027 | 370 | 48 | 0 | 1 | 370 | 20 | 389 | 0.0 | 691 |
| MS.gene09285.t1 | MTR_5g007717 | 86.486 | 370 | 50 | 0 | 1 | 370 | 20 | 389 | 0.0 | 689 |
| MS.gene09285.t1 | MTR_7g016780 | 87.027 | 370 | 48 | 0 | 1 | 370 | 20 | 389 | 0.0 | 689 |
| MS.gene09285.t1 | MTR_7g084300 | 85.135 | 370 | 55 | 0 | 1 | 370 | 20 | 389 | 0.0 | 668 |
| MS.gene09285.t1 | MTR_2g058470 | 82.432 | 370 | 65 | 0 | 1 | 370 | 20 | 389 | 0.0 | 659 |
| MS.gene09285.t1 | MTR_3g086260 | 81.572 | 369 | 68 | 0 | 1 | 369 | 20 | 388 | 0.0 | 634 |
| MS.gene09285.t1 | MTR_3g088675 | 71.892 | 370 | 104 | 0 | 1 | 370 | 20 | 389 | 0.0 | 578 |
| MS.gene09285.t1 | MTR_7g113405 | 87.789 | 303 | 37 | 0 | 68 | 370 | 1 | 303 | 0.0 | 556 |
| MS.gene09285.t1 | MTR_5g007740 | 77.914 | 326 | 72 | 0 | 45 | 370 | 1 | 326 | 0.0 | 531 |
| MS.gene09285.t1 | MTR_5g007723 | 65.217 | 391 | 83 | 5 | 1 | 370 | 40 | 398 | 4.93e-179 | 503 |
| MS.gene09285.t1 | MTR_5g007770 | 74.000 | 300 | 45 | 2 | 51 | 350 | 1 | 267 | 9.95e-160 | 449 |
| MS.gene09285.t1 | MTR_3g088670 | 49.211 | 380 | 179 | 7 | 1 | 369 | 12 | 388 | 1.69e-127 | 372 |
| MS.gene09285.t1 | MTR_4g075560 | 43.396 | 371 | 203 | 4 | 1 | 368 | 22 | 388 | 2.88e-102 | 307 |
| MS.gene09285.t1 | MTR_4g078730 | 39.130 | 368 | 217 | 2 | 1 | 368 | 29 | 389 | 3.58e-96 | 291 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09285.t1 | AT5G13930 | 84.824 | 369 | 55 | 1 | 1 | 368 | 25 | 393 | 0.0 | 655 |
| MS.gene09285.t1 | AT4G34850 | 41.398 | 372 | 214 | 3 | 1 | 370 | 23 | 392 | 1.89e-97 | 295 |
| MS.gene09285.t1 | AT4G00040 | 41.509 | 371 | 207 | 5 | 1 | 368 | 22 | 385 | 1.26e-96 | 293 |
| MS.gene09285.t1 | AT1G02050 | 41.081 | 370 | 210 | 4 | 1 | 368 | 29 | 392 | 1.21e-88 | 273 |
| MS.gene09285.t1 | AT4G34850 | 42.188 | 320 | 182 | 2 | 53 | 370 | 1 | 319 | 5.89e-85 | 261 |
| MS.gene09285.t1 | AT3G52160 | 29.388 | 245 | 149 | 11 | 131 | 368 | 97 | 324 | 9.04e-13 | 68.9 |
| MS.gene09285.t1 | AT3G52160 | 29.388 | 245 | 149 | 11 | 131 | 368 | 210 | 437 | 1.53e-12 | 68.9 |
Find 97 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAAATGTGTTGAGTAATTA+TGG | 0.159032 | 4.1:-14354714 | MS.gene09285:CDS |
| AGATATACCCAAAGGTTTAA+AGG | 0.245773 | 4.1:+14354839 | None:intergenic |
| TGTGGCTAGTCCATTGTCTT+TGG | 0.266427 | 4.1:+14354638 | None:intergenic |
| CTGATTATAACTCAATCTTT+TGG | 0.272111 | 4.1:-14354818 | MS.gene09285:CDS |
| TGGGGTGTGTTGTTTGGTTT+TGG | 0.276522 | 4.1:-14354597 | MS.gene09285:CDS |
| CTTGAATGGGGTGTGTTGTT+TGG | 0.296451 | 4.1:-14354603 | MS.gene09285:CDS |
| GGTTGAAGCCTTTAAACCTT+TGG | 0.319052 | 4.1:-14354847 | MS.gene09285:CDS |
| GTTGAAGCCTTTAAACCTTT+GGG | 0.337605 | 4.1:-14354846 | MS.gene09285:CDS |
| TCAATAGCTCCTTCACTATC+AGG | 0.344839 | 4.1:+14354954 | None:intergenic |
| AGATTTGGCCGAGAACAATA+AGG | 0.345027 | 4.1:-14355171 | MS.gene09285:CDS |
| TGCCATGTAAGCACACATAT+TGG | 0.349143 | 4.1:+14355454 | None:intergenic |
| TCTTCGTTTGGCTAAAGATT+TGG | 0.349738 | 4.1:-14355186 | MS.gene09285:CDS |
| CTTGTGGGACAAGCCTTGTT+TGG | 0.358463 | 4.1:-14355071 | MS.gene09285:CDS |
| GGTCTCTCAACCTCAGATAA+TGG | 0.362073 | 4.1:+14355014 | None:intergenic |
| TTCAAGCCCTTCACCATTTG+TGG | 0.366733 | 4.1:+14354620 | None:intergenic |
| CCTGCCACTGTCATGGCAAT+TGG | 0.376106 | 4.1:-14355769 | None:intergenic |
| AGATGAGTGATCTTGGACTT+TGG | 0.383652 | 4.1:+14355338 | None:intergenic |
| CTTCGTAGTGTTGCTGTTTG+AGG | 0.394685 | 4.1:-14354546 | None:intergenic |
| CAAATGGTGAAGGGCTTGAA+TGG | 0.399135 | 4.1:-14354617 | MS.gene09285:CDS |
| GGCACTCTGATCAACACAAT+TGG | 0.400045 | 4.1:+14355732 | None:intergenic |
| GTCAAGAATCGCTGGTCCAC+CGG | 0.403855 | 4.1:+14354785 | None:intergenic |
| TGGTGGTACGGTTCTTCGTT+TGG | 0.404129 | 4.1:-14355198 | MS.gene09285:CDS |
| AACAAAAGCGATCAAGGAAT+GGG | 0.414224 | 4.1:-14355366 | MS.gene09285:CDS |
| GTAACACGAAAGTAGTAATC+AGG | 0.426197 | 4.1:+14355706 | None:intergenic |
| ACGAGCACCCTTATTGTTCT+CGG | 0.427988 | 4.1:+14355163 | None:intergenic |
| TGCTTACATGGCACCATCAT+TGG | 0.429205 | 4.1:-14355444 | MS.gene09285:CDS |
| GCCATGTAAGCACACATATT+GGG | 0.431280 | 4.1:+14355455 | None:intergenic |
| GACCAAGTTGAGGACAAGTT+AGG | 0.432585 | 4.1:-14354765 | MS.gene09285:CDS |
| AAAGATGAGATGAGTGATCT+TGG | 0.440160 | 4.1:+14355331 | None:intergenic |
| TCCCAATATGTGTGCTTACA+TGG | 0.455956 | 4.1:-14355456 | MS.gene09285:CDS |
| CACCAGCAAAACACCCTTGT+TGG | 0.461998 | 4.1:+14355216 | None:intergenic |
| CATCTTCTCAAGGATGTGCC+TGG | 0.465539 | 4.1:-14354900 | MS.gene09285:CDS |
| TCAAGAATCGCTGGTCCACC+GGG | 0.466810 | 4.1:+14354786 | None:intergenic |
| GAAATGTGTTGAGTAATTAT+GGG | 0.467565 | 4.1:-14354713 | MS.gene09285:CDS |
| ATATTCTTTGAGATAAGTCC+AGG | 0.468877 | 4.1:+14354882 | None:intergenic |
| AAAGAATATCGAAAAGGCCT+TGG | 0.477216 | 4.1:-14354868 | MS.gene09285:CDS |
| AGCAGCAACAAAAGCGATCA+AGG | 0.478551 | 4.1:-14355372 | MS.gene09285:CDS |
| AAATGGTGAAGGGCTTGAAT+GGG | 0.480119 | 4.1:-14354616 | MS.gene09285:CDS |
| CAGGCACATCCTTGAGAAGA+TGG | 0.483610 | 4.1:+14354901 | None:intergenic |
| ACCCATCTTGATAGTCTTGT+GGG | 0.484612 | 4.1:-14355086 | MS.gene09285:CDS |
| GATAGTGAAGGAGCTATTGA+TGG | 0.490775 | 4.1:-14354951 | MS.gene09285:CDS |
| GACAATGGACTAGCCACAAA+TGG | 0.497399 | 4.1:-14354633 | MS.gene09285:CDS |
| GTAGTAGAGGTACCAAGGTT+AGG | 0.498294 | 4.1:-14355401 | MS.gene09285:CDS |
| AACCTAACTTGTCCTCAACT+TGG | 0.500607 | 4.1:+14354763 | None:intergenic |
| CAACAAAAGCGATCAAGGAA+TGG | 0.503536 | 4.1:-14355367 | MS.gene09285:CDS |
| GGCGCTGCTGCTGTGATCGT+TGG | 0.504753 | 4.1:-14355044 | MS.gene09285:CDS |
| ATCACTGCAGTCACATTTCG+TGG | 0.507660 | 4.1:-14355119 | MS.gene09285:CDS |
| GCACTCTGATCAACACAATT+GGG | 0.516829 | 4.1:+14355733 | None:intergenic |
| CTATCAAGATGGGTGTCACT+AGG | 0.518069 | 4.1:+14355095 | None:intergenic |
| GACCTTTGTTTGAGTTAGTG+TGG | 0.519425 | 4.1:-14354995 | MS.gene09285:CDS |
| TATCTCAAAGAATATCGAAA+AGG | 0.521856 | 4.1:-14354874 | MS.gene09285:CDS |
| GATTTGGCCGAGAACAATAA+GGG | 0.524555 | 4.1:-14355170 | MS.gene09285:CDS |
| TAAGGGTGCTCGTGTTCTTG+TGG | 0.534484 | 4.1:-14355153 | MS.gene09285:CDS |
| TCAACTTGGTCAAGAATCGC+TGG | 0.535204 | 4.1:+14354777 | None:intergenic |
| TATCAGCTCACAAAATTGCT+AGG | 0.538946 | 4.1:-14355272 | MS.gene09285:CDS |
| TCTTGCCTTGCATCCAATGA+TGG | 0.539914 | 4.1:+14355431 | None:intergenic |
| AGGTTTAAAGGCTTCAACCA+AGG | 0.540344 | 4.1:+14354851 | None:intergenic |
| GTCCCACAAGACTATCAAGA+TGG | 0.540528 | 4.1:+14355084 | None:intergenic |
| GATGGTCACCTTCGCGAGGT+TGG | 0.549915 | 4.1:-14354933 | MS.gene09285:CDS |
| ACAGTCTCAACAGTAAGTCC+AGG | 0.551294 | 4.1:+14354573 | None:intergenic |
| CACCCATCTTGATAGTCTTG+TGG | 0.559465 | 4.1:-14355087 | MS.gene09285:CDS |
| GGACAAGCCTTGTTTGGAGA+TGG | 0.567510 | 4.1:-14355065 | MS.gene09285:CDS |
| TGGTTCAGATCCATTATCTG+AGG | 0.568237 | 4.1:-14355024 | MS.gene09285:CDS |
| GCAAGACATGGTGGTAGTAG+AGG | 0.569686 | 4.1:-14355414 | MS.gene09285:CDS |
| CGTTATATGATGTACCAACA+AGG | 0.574165 | 4.1:-14355230 | MS.gene09285:CDS |
| ATCATATAACGTTTCACTGA+CGG | 0.577798 | 4.1:+14355242 | None:intergenic |
| GTGAGCTGATAATCAGCACC+AGG | 0.579712 | 4.1:+14355284 | None:intergenic |
| ACTAACGTTCCATCTTCTCA+AGG | 0.580112 | 4.1:-14354910 | MS.gene09285:CDS |
| TGGCACCATCATTGGATGCA+AGG | 0.580252 | 4.1:-14355436 | MS.gene09285:CDS |
| GGACTAGCCACAAATGGTGA+AGG | 0.580410 | 4.1:-14354627 | MS.gene09285:CDS |
| ACTAGTGGTGTGGATATGCC+TGG | 0.593754 | 4.1:-14355302 | MS.gene09285:CDS |
| AGAAAGAAGTCCAAAGACAA+TGG | 0.595443 | 4.1:-14354648 | MS.gene09285:CDS |
| AGCAGCGCCATCTCCAAACA+AGG | 0.603893 | 4.1:+14355058 | None:intergenic |
| ACGAAAGTAGTAATCAGGAT+AGG | 0.608904 | 4.1:+14355711 | None:intergenic |
| GTCCACACTAACTCAAACAA+AGG | 0.609914 | 4.1:+14354993 | None:intergenic |
| TCCCACAAGACTATCAAGAT+GGG | 0.611475 | 4.1:+14355085 | None:intergenic |
| AGCGATTCTTGACCAAGTTG+AGG | 0.611679 | 4.1:-14354775 | MS.gene09285:CDS |
| ATTACTCAACACATTTCGAG+TGG | 0.621388 | 4.1:+14354719 | None:intergenic |
| ATTGGATGCAAGGCAAGACA+TGG | 0.621464 | 4.1:-14355426 | MS.gene09285:CDS |
| GACTAGCCACAAATGGTGAA+GGG | 0.622393 | 4.1:-14354626 | MS.gene09285:CDS |
| TATTGATGGTCACCTTCGCG+AGG | 0.623303 | 4.1:-14354937 | MS.gene09285:CDS |
| AGGCATATCCACACCACTAG+TGG | 0.631547 | 4.1:+14355304 | None:intergenic |
| TAGCTCCTTCACTATCAGGA+AGG | 0.639577 | 4.1:+14354958 | None:intergenic |
| TCACTGCAGTCACATTTCGT+GGG | 0.640496 | 4.1:-14355118 | MS.gene09285:CDS |
| ACAATCCTTCCTGATAGTGA+AGG | 0.644822 | 4.1:-14354963 | MS.gene09285:CDS |
| CAGTCTCAACAGTAAGTCCA+GGG | 0.652785 | 4.1:+14354574 | None:intergenic |
| ACGTTAGTCCAACCTCGCGA+AGG | 0.653377 | 4.1:+14354925 | None:intergenic |
| TTATAATCAGATATACCCAA+AGG | 0.655709 | 4.1:+14354831 | None:intergenic |
| AAAAGTCTATGATTAAGAAG+CGG | 0.662001 | 4.1:-14355514 | MS.gene09285:CDS |
| CTCTGATCAACACAATTGGG+AGG | 0.666044 | 4.1:+14355736 | None:intergenic |
| ACAAAAGCGATCAAGGAATG+GGG | 0.673405 | 4.1:-14355365 | MS.gene09285:CDS |
| TGGTGGTAGTAGAGGTACCA+AGG | 0.673508 | 4.1:-14355406 | MS.gene09285:CDS |
| GCGGTACATGTATTTAACAG+AGG | 0.677627 | 4.1:-14355495 | MS.gene09285:CDS |
| GTTATATGATGTACCAACAA+GGG | 0.680098 | 4.1:-14355229 | MS.gene09285:CDS |
| AATGGTGAAGGGCTTGAATG+GGG | 0.680268 | 4.1:-14354615 | MS.gene09285:CDS |
| GGATGCAAGGCAAGACATGG+TGG | 0.685874 | 4.1:-14355423 | MS.gene09285:CDS |
| CAAGAATCGCTGGTCCACCG+GGG | 0.742378 | 4.1:+14354787 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTCATTGAAATATATTTC+AGG | - | chr4.1:14354766-14354785 | MS.gene09285:CDS | 15.0% |
| ! | AAAAGTCTATGATTAAGAAG+CGG | - | chr4.1:14354791-14354810 | MS.gene09285:CDS | 25.0% |
| ! | GAAATGTGTTGAGTAATTAT+GGG | - | chr4.1:14355592-14355611 | MS.gene09285:intron | 25.0% |
| ! | TATCTCAAAGAATATCGAAA+AGG | - | chr4.1:14355431-14355450 | MS.gene09285:CDS | 25.0% |
| ! | TCTTTAACAAACATTGTCTT+TGG | + | chr4.1:14354719-14354738 | None:intergenic | 25.0% |
| ! | TTATAATCAGATATACCCAA+AGG | + | chr4.1:14355477-14355496 | None:intergenic | 25.0% |
| !! | CTGATTATAACTCAATCTTT+TGG | - | chr4.1:14355487-14355506 | MS.gene09285:CDS | 25.0% |
| AGATATACCCAAAGGTTTAA+AGG | + | chr4.1:14355469-14355488 | None:intergenic | 30.0% | |
| ATCATATAACGTTTCACTGA+CGG | + | chr4.1:14355066-14355085 | None:intergenic | 30.0% | |
| CGAAATGTGTTGAGTAATTA+TGG | - | chr4.1:14355591-14355610 | MS.gene09285:intron | 30.0% | |
| GTTATATGATGTACCAACAA+GGG | - | chr4.1:14355076-14355095 | MS.gene09285:CDS | 30.0% | |
| !! | ATATTCTTTGAGATAAGTCC+AGG | + | chr4.1:14355426-14355445 | None:intergenic | 30.0% |
| AAAGAATATCGAAAAGGCCT+TGG | - | chr4.1:14355437-14355456 | MS.gene09285:CDS | 35.0% | |
| AAAGATGAGATGAGTGATCT+TGG | + | chr4.1:14354977-14354996 | None:intergenic | 35.0% | |
| AACAAAAGCGATCAAGGAAT+GGG | - | chr4.1:14354939-14354958 | MS.gene09285:CDS | 35.0% | |
| ACGAAAGTAGTAATCAGGAT+AGG | + | chr4.1:14354597-14354616 | None:intergenic | 35.0% | |
| AGAAAGAAGTCCAAAGACAA+TGG | - | chr4.1:14355657-14355676 | MS.gene09285:intron | 35.0% | |
| ATTACTCAACACATTTCGAG+TGG | + | chr4.1:14355589-14355608 | None:intergenic | 35.0% | |
| CGTTATATGATGTACCAACA+AGG | - | chr4.1:14355075-14355094 | MS.gene09285:CDS | 35.0% | |
| GTAACACGAAAGTAGTAATC+AGG | + | chr4.1:14354602-14354621 | None:intergenic | 35.0% | |
| GTTGAAGCCTTTAAACCTTT+GGG | - | chr4.1:14355459-14355478 | MS.gene09285:CDS | 35.0% | |
| TATCAGCTCACAAAATTGCT+AGG | - | chr4.1:14355033-14355052 | MS.gene09285:CDS | 35.0% | |
| TCTTCGTTTGGCTAAAGATT+TGG | - | chr4.1:14355119-14355138 | MS.gene09285:CDS | 35.0% | |
| ! | AGGTTTGAAGCCTGAAAAAT+TGG | - | chr4.1:14355560-14355579 | MS.gene09285:intron | 35.0% |
| AAATGGTGAAGGGCTTGAAT+GGG | - | chr4.1:14355689-14355708 | MS.gene09285:CDS | 40.0% | |
| ACAAAAGCGATCAAGGAATG+GGG | - | chr4.1:14354940-14354959 | MS.gene09285:CDS | 40.0% | |
| ACTAACGTTCCATCTTCTCA+AGG | - | chr4.1:14355395-14355414 | MS.gene09285:CDS | 40.0% | |
| AGATGAGTGATCTTGGACTT+TGG | + | chr4.1:14354970-14354989 | None:intergenic | 40.0% | |
| AGATTTGGCCGAGAACAATA+AGG | - | chr4.1:14355134-14355153 | MS.gene09285:CDS | 40.0% | |
| AGGTTTAAAGGCTTCAACCA+AGG | + | chr4.1:14355457-14355476 | None:intergenic | 40.0% | |
| CAACAAAAGCGATCAAGGAA+TGG | - | chr4.1:14354938-14354957 | MS.gene09285:CDS | 40.0% | |
| GATAGTGAAGGAGCTATTGA+TGG | - | chr4.1:14355354-14355373 | MS.gene09285:CDS | 40.0% | |
| GATTTGGCCGAGAACAATAA+GGG | - | chr4.1:14355135-14355154 | MS.gene09285:CDS | 40.0% | |
| GCACTCTGATCAACACAATT+GGG | + | chr4.1:14354575-14354594 | None:intergenic | 40.0% | |
| GCCATGTAAGCACACATATT+GGG | + | chr4.1:14354853-14354872 | None:intergenic | 40.0% | |
| GCGGTACATGTATTTAACAG+AGG | - | chr4.1:14354810-14354829 | MS.gene09285:CDS | 40.0% | |
| GGTTGAAGCCTTTAAACCTT+TGG | - | chr4.1:14355458-14355477 | MS.gene09285:CDS | 40.0% | |
| GTCCACACTAACTCAAACAA+AGG | + | chr4.1:14355315-14355334 | None:intergenic | 40.0% | |
| TCAATAGCTCCTTCACTATC+AGG | + | chr4.1:14355354-14355373 | None:intergenic | 40.0% | |
| TCCCAATATGTGTGCTTACA+TGG | - | chr4.1:14354849-14354868 | MS.gene09285:CDS | 40.0% | |
| TCCCACAAGACTATCAAGAT+GGG | + | chr4.1:14355223-14355242 | None:intergenic | 40.0% | |
| TGCCATGTAAGCACACATAT+TGG | + | chr4.1:14354854-14354873 | None:intergenic | 40.0% | |
| TGGTTCAGATCCATTATCTG+AGG | - | chr4.1:14355281-14355300 | MS.gene09285:CDS | 40.0% | |
| ! | AACCTAACTTGTCCTCAACT+TGG | + | chr4.1:14355545-14355564 | None:intergenic | 40.0% |
| ! | ACAATCCTTCCTGATAGTGA+AGG | - | chr4.1:14355342-14355361 | MS.gene09285:CDS | 40.0% |
| ! | CTCATCTTTTGTACCACTAG+TGG | - | chr4.1:14354988-14355007 | MS.gene09285:CDS | 40.0% |
| ! | GACCTTTGTTTGAGTTAGTG+TGG | - | chr4.1:14355310-14355329 | MS.gene09285:CDS | 40.0% |
| !! | ACCCATCTTGATAGTCTTGT+GGG | - | chr4.1:14355219-14355238 | MS.gene09285:CDS | 40.0% |
| AATGGTGAAGGGCTTGAATG+GGG | - | chr4.1:14355690-14355709 | MS.gene09285:CDS | 45.0% | |
| ACAGTCTCAACAGTAAGTCC+AGG | + | chr4.1:14355735-14355754 | None:intergenic | 45.0% | |
| ACGAGCACCCTTATTGTTCT+CGG | + | chr4.1:14355145-14355164 | None:intergenic | 45.0% | |
| AGCAGCAACAAAAGCGATCA+AGG | - | chr4.1:14354933-14354952 | MS.gene09285:CDS | 45.0% | |
| AGCGATTCTTGACCAAGTTG+AGG | - | chr4.1:14355530-14355549 | MS.gene09285:intron | 45.0% | |
| ATCACTGCAGTCACATTTCG+TGG | - | chr4.1:14355186-14355205 | MS.gene09285:CDS | 45.0% | |
| ATTGGATGCAAGGCAAGACA+TGG | - | chr4.1:14354879-14354898 | MS.gene09285:CDS | 45.0% | |
| CAAATGGTGAAGGGCTTGAA+TGG | - | chr4.1:14355688-14355707 | MS.gene09285:CDS | 45.0% | |
| CAGTCTCAACAGTAAGTCCA+GGG | + | chr4.1:14355734-14355753 | None:intergenic | 45.0% | |
| CTCTGATCAACACAATTGGG+AGG | + | chr4.1:14354572-14354591 | None:intergenic | 45.0% | |
| GGCACTCTGATCAACACAAT+TGG | + | chr4.1:14354576-14354595 | None:intergenic | 45.0% | |
| GGTCTCTCAACCTCAGATAA+TGG | + | chr4.1:14355294-14355313 | None:intergenic | 45.0% | |
| GTCCCACAAGACTATCAAGA+TGG | + | chr4.1:14355224-14355243 | None:intergenic | 45.0% | |
| TAGCTCCTTCACTATCAGGA+AGG | + | chr4.1:14355350-14355369 | None:intergenic | 45.0% | |
| TCAACTTGGTCAAGAATCGC+TGG | + | chr4.1:14355531-14355550 | None:intergenic | 45.0% | |
| TCACTGCAGTCACATTTCGT+GGG | - | chr4.1:14355187-14355206 | MS.gene09285:CDS | 45.0% | |
| TCTTGCCTTGCATCCAATGA+TGG | + | chr4.1:14354877-14354896 | None:intergenic | 45.0% | |
| TGCTTACATGGCACCATCAT+TGG | - | chr4.1:14354861-14354880 | MS.gene09285:CDS | 45.0% | |
| TTCAAGCCCTTCACCATTTG+TGG | + | chr4.1:14355688-14355707 | None:intergenic | 45.0% | |
| ! | ATCTTTTGGATTGCTCACCC+CGG | - | chr4.1:14355501-14355520 | MS.gene09285:CDS | 45.0% |
| ! | CACCCATCTTGATAGTCTTG+TGG | - | chr4.1:14355218-14355237 | MS.gene09285:CDS | 45.0% |
| ! | CGAGTGGCTTCCAATTTTTC+AGG | + | chr4.1:14355573-14355592 | None:intergenic | 45.0% |
| ! | CTTGAATGGGGTGTGTTGTT+TGG | - | chr4.1:14355702-14355721 | MS.gene09285:CDS | 45.0% |
| ! | CTTTTGTACCACTAGTGGTG+TGG | - | chr4.1:14354993-14355012 | MS.gene09285:CDS | 45.0% |
| ! | GACCAAGTTGAGGACAAGTT+AGG | - | chr4.1:14355540-14355559 | MS.gene09285:intron | 45.0% |
| ! | GACTAGCCACAAATGGTGAA+GGG | - | chr4.1:14355679-14355698 | MS.gene09285:CDS | 45.0% |
| ! | GCTGCTTCTTTTCCTAACCT+TGG | + | chr4.1:14354919-14354938 | None:intergenic | 45.0% |
| ! | TGTGGCTAGTCCATTGTCTT+TGG | + | chr4.1:14355670-14355689 | None:intergenic | 45.0% |
| !! | CTATCAAGATGGGTGTCACT+AGG | + | chr4.1:14355213-14355232 | None:intergenic | 45.0% |
| !! | GACAATGGACTAGCCACAAA+TGG | - | chr4.1:14355672-14355691 | MS.gene09285:CDS | 45.0% |
| !! | GTAGTAGAGGTACCAAGGTT+AGG | - | chr4.1:14354904-14354923 | MS.gene09285:CDS | 45.0% |
| !!! | TACCAACAAGGGTGTTTTGC+TGG | - | chr4.1:14355087-14355106 | MS.gene09285:CDS | 45.0% |
| !!! | TGGGGTGTGTTGTTTGGTTT+TGG | - | chr4.1:14355708-14355727 | MS.gene09285:CDS | 45.0% |
| ACTAGTGGTGTGGATATGCC+TGG | - | chr4.1:14355003-14355022 | MS.gene09285:CDS | 50.0% | |
| AGGCATATCCACACCACTAG+TGG | + | chr4.1:14355004-14355023 | None:intergenic | 50.0% | |
| CACCAGCAAAACACCCTTGT+TGG | + | chr4.1:14355092-14355111 | None:intergenic | 50.0% | |
| CAGGCACATCCTTGAGAAGA+TGG | + | chr4.1:14355407-14355426 | None:intergenic | 50.0% | |
| CATCTTCTCAAGGATGTGCC+TGG | - | chr4.1:14355405-14355424 | MS.gene09285:CDS | 50.0% | |
| GCAAGACATGGTGGTAGTAG+AGG | - | chr4.1:14354891-14354910 | MS.gene09285:CDS | 50.0% | |
| GTGAGCTGATAATCAGCACC+AGG | + | chr4.1:14355024-14355043 | None:intergenic | 50.0% | |
| TGGCACCATCATTGGATGCA+AGG | - | chr4.1:14354869-14354888 | MS.gene09285:CDS | 50.0% | |
| TGGTGGTACGGTTCTTCGTT+TGG | - | chr4.1:14355107-14355126 | MS.gene09285:CDS | 50.0% | |
| ! | TATTGATGGTCACCTTCGCG+AGG | - | chr4.1:14355368-14355387 | MS.gene09285:CDS | 50.0% |
| !! | AGGGTGTTTTGCTGGTGGTA+CGG | - | chr4.1:14355095-14355114 | MS.gene09285:CDS | 50.0% |
| !! | CTTGTGGGACAAGCCTTGTT+TGG | - | chr4.1:14355234-14355253 | MS.gene09285:CDS | 50.0% |
| !! | GGACAAGCCTTGTTTGGAGA+TGG | - | chr4.1:14355240-14355259 | MS.gene09285:CDS | 50.0% |
| !! | GGACTAGCCACAAATGGTGA+AGG | - | chr4.1:14355678-14355697 | MS.gene09285:CDS | 50.0% |
| !! | TAAGGGTGCTCGTGTTCTTG+TGG | - | chr4.1:14355152-14355171 | MS.gene09285:CDS | 50.0% |
| !! | TGGTGGTAGTAGAGGTACCA+AGG | - | chr4.1:14354899-14354918 | MS.gene09285:CDS | 50.0% |
| !!! | CAACAAGGGTGTTTTGCTGG+TGG | - | chr4.1:14355090-14355109 | MS.gene09285:CDS | 50.0% |
| !!! | GTGTTGTTTGGTTTTGGCCC+TGG | - | chr4.1:14355714-14355733 | MS.gene09285:CDS | 50.0% |
| ACGTTAGTCCAACCTCGCGA+AGG | + | chr4.1:14355383-14355402 | None:intergenic | 55.0% | |
| AGCAGCGCCATCTCCAAACA+AGG | + | chr4.1:14355250-14355269 | None:intergenic | 55.0% | |
| GGATGCAAGGCAAGACATGG+TGG | - | chr4.1:14354882-14354901 | MS.gene09285:CDS | 55.0% | |
| GTCAAGAATCGCTGGTCCAC+CGG | + | chr4.1:14355523-14355542 | None:intergenic | 55.0% | |
| TCAAGAATCGCTGGTCCACC+GGG | + | chr4.1:14355522-14355541 | None:intergenic | 55.0% | |
| ! | TTTTGGATTGCTCACCCCGG+TGG | - | chr4.1:14355504-14355523 | MS.gene09285:CDS | 55.0% |
| CAAGAATCGCTGGTCCACCG+GGG | + | chr4.1:14355521-14355540 | None:intergenic | 60.0% | |
| GATGGTCACCTTCGCGAGGT+TGG | - | chr4.1:14355372-14355391 | MS.gene09285:CDS | 60.0% | |
| GGCGCTGCTGCTGTGATCGT+TGG | - | chr4.1:14355261-14355280 | MS.gene09285:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 14354548 | 14355779 | 14354548 | ID=MS.gene09285 |
| chr4.1 | mRNA | 14354548 | 14355779 | 14354548 | ID=MS.gene09285.t1;Parent=MS.gene09285 |
| chr4.1 | exon | 14355659 | 14355779 | 14355659 | ID=MS.gene09285.t1.exon1;Parent=MS.gene09285.t1 |
| chr4.1 | CDS | 14355659 | 14355779 | 14355659 | ID=cds.MS.gene09285.t1;Parent=MS.gene09285.t1 |
| chr4.1 | exon | 14354548 | 14355539 | 14354548 | ID=MS.gene09285.t1.exon2;Parent=MS.gene09285.t1 |
| chr4.1 | CDS | 14354548 | 14355539 | 14354548 | ID=cds.MS.gene09285.t1;Parent=MS.gene09285.t1 |
| Gene Sequence |
| Protein sequence |
