Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09571.t1 | XP_003611628.1 | 96.9 | 293 | 9 | 0 | 1 | 293 | 1 | 293 | 5.30E-163 | 583.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09571.t1 | Q8VZJ7 | 64.2 | 279 | 99 | 1 | 11 | 289 | 7 | 284 | 4.4e-102 | 372.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09571.t1 | G7K3W6 | 96.9 | 293 | 9 | 0 | 1 | 293 | 1 | 293 | 3.8e-163 | 583.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene09571 | MS.gene56734 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09571.t1 | MTR_5g016090 | 96.928 | 293 | 9 | 0 | 1 | 293 | 1 | 293 | 0.0 | 592 |
MS.gene09571.t1 | MTR_4g095370 | 71.572 | 299 | 77 | 4 | 1 | 294 | 1 | 296 | 1.97e-157 | 441 |
MS.gene09571.t1 | MTR_5g016090 | 96.471 | 170 | 6 | 0 | 1 | 170 | 1 | 170 | 2.25e-117 | 337 |
MS.gene09571.t1 | MTR_4g095370 | 67.619 | 210 | 60 | 4 | 1 | 205 | 1 | 207 | 2.62e-97 | 285 |
MS.gene09571.t1 | MTR_4g095370 | 67.464 | 209 | 60 | 4 | 1 | 204 | 1 | 206 | 8.73e-97 | 284 |
MS.gene09571.t1 | MTR_8g074810 | 45.455 | 209 | 105 | 5 | 84 | 287 | 68 | 272 | 5.25e-57 | 185 |
MS.gene09571.t1 | MTR_5g022960 | 45.673 | 208 | 106 | 4 | 84 | 287 | 79 | 283 | 5.99e-57 | 185 |
MS.gene09571.t1 | MTR_8g074890 | 43.750 | 208 | 110 | 4 | 84 | 287 | 67 | 271 | 8.58e-55 | 179 |
MS.gene09571.t1 | MTR_8g074880 | 43.602 | 211 | 104 | 5 | 84 | 286 | 116 | 319 | 1.14e-53 | 177 |
MS.gene09571.t1 | MTR_8g074830 | 43.269 | 208 | 111 | 4 | 84 | 287 | 71 | 275 | 3.34e-52 | 172 |
MS.gene09571.t1 | MTR_3g114670 | 44.231 | 208 | 107 | 5 | 84 | 286 | 70 | 273 | 3.86e-52 | 172 |
MS.gene09571.t1 | MTR_2g020800 | 42.222 | 225 | 117 | 6 | 69 | 286 | 28 | 246 | 2.48e-49 | 166 |
MS.gene09571.t1 | MTR_6g009440 | 42.439 | 205 | 110 | 5 | 86 | 286 | 54 | 254 | 5.38e-49 | 165 |
MS.gene09571.t1 | MTR_2g020800 | 42.731 | 227 | 115 | 7 | 69 | 286 | 28 | 248 | 1.56e-48 | 164 |
MS.gene09571.t1 | MTR_1g116810 | 41.148 | 209 | 118 | 4 | 84 | 291 | 76 | 280 | 4.94e-47 | 159 |
MS.gene09571.t1 | MTR_4g118560 | 40.807 | 223 | 117 | 6 | 73 | 286 | 27 | 243 | 5.00e-47 | 160 |
MS.gene09571.t1 | MTR_8g074870 | 38.710 | 248 | 108 | 7 | 48 | 287 | 8 | 219 | 1.55e-46 | 156 |
MS.gene09571.t1 | MTR_3g114610 | 41.346 | 208 | 108 | 7 | 84 | 286 | 97 | 295 | 3.11e-44 | 152 |
MS.gene09571.t1 | MTR_3g114590 | 41.627 | 209 | 105 | 5 | 84 | 286 | 65 | 262 | 4.32e-44 | 158 |
MS.gene09571.t1 | MTR_3g114590 | 36.036 | 222 | 115 | 10 | 68 | 286 | 262 | 459 | 2.55e-29 | 117 |
MS.gene09571.t1 | MTR_5g022960 | 38.281 | 128 | 76 | 2 | 84 | 211 | 79 | 203 | 2.25e-23 | 95.5 |
MS.gene09571.t1 | MTR_3g051200 | 37.692 | 130 | 69 | 5 | 98 | 223 | 25 | 146 | 4.59e-18 | 79.7 |
MS.gene09571.t1 | MTR_6g053720 | 23.954 | 263 | 167 | 7 | 27 | 285 | 4 | 237 | 5.32e-18 | 82.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09571.t1 | AT4G33910 | 64.158 | 279 | 99 | 1 | 11 | 289 | 7 | 284 | 1.25e-132 | 378 |
MS.gene09571.t1 | AT2G23096 | 55.197 | 279 | 114 | 4 | 13 | 291 | 6 | 273 | 1.20e-109 | 319 |
MS.gene09571.t1 | AT1G20270 | 37.324 | 284 | 154 | 9 | 10 | 286 | 14 | 280 | 6.53e-57 | 185 |
MS.gene09571.t1 | AT5G66060 | 42.584 | 209 | 113 | 4 | 83 | 287 | 78 | 283 | 3.82e-53 | 175 |
MS.gene09571.t1 | AT3G28490 | 44.660 | 206 | 105 | 4 | 86 | 286 | 35 | 236 | 3.92e-53 | 175 |
MS.gene09571.t1 | AT3G28480 | 42.439 | 205 | 110 | 4 | 86 | 286 | 59 | 259 | 2.17e-50 | 169 |
MS.gene09571.t1 | AT4G35810 | 39.904 | 208 | 116 | 5 | 83 | 285 | 80 | 283 | 5.43e-49 | 164 |
MS.gene09571.t1 | AT4G35810 | 39.904 | 208 | 116 | 5 | 83 | 285 | 80 | 283 | 5.43e-49 | 164 |
MS.gene09571.t1 | AT2G17720 | 40.865 | 208 | 112 | 5 | 84 | 285 | 81 | 283 | 8.47e-49 | 164 |
MS.gene09571.t1 | AT5G18900 | 42.130 | 216 | 116 | 5 | 77 | 286 | 31 | 243 | 6.18e-47 | 159 |
MS.gene09571.t1 | AT3G06300 | 41.346 | 208 | 111 | 5 | 86 | 286 | 41 | 244 | 5.48e-46 | 157 |
MS.gene09571.t1 | AT2G43080 | 37.559 | 213 | 128 | 3 | 78 | 289 | 72 | 280 | 1.76e-45 | 155 |
MS.gene09571.t1 | AT3G28480 | 39.524 | 210 | 119 | 4 | 86 | 287 | 59 | 268 | 1.43e-42 | 149 |
MS.gene09571.t1 | AT4G35820 | 37.113 | 194 | 99 | 5 | 78 | 270 | 91 | 262 | 9.47e-34 | 124 |
MS.gene09571.t1 | AT5G66060 | 40.690 | 145 | 81 | 3 | 84 | 228 | 79 | 218 | 2.89e-28 | 109 |
MS.gene09571.t1 | AT1G20270 | 30.542 | 203 | 127 | 5 | 9 | 211 | 13 | 201 | 3.97e-25 | 100 |
MS.gene09571.t1 | AT1G20270 | 30.542 | 203 | 127 | 5 | 9 | 211 | 13 | 201 | 3.97e-25 | 100 |
MS.gene09571.t1 | AT4G25600 | 28.704 | 216 | 123 | 5 | 74 | 286 | 50 | 237 | 5.01e-18 | 82.8 |
MS.gene09571.t1 | AT4G25600 | 28.358 | 201 | 109 | 6 | 91 | 286 | 3 | 173 | 2.44e-14 | 71.2 |
MS.gene09571.t1 | AT4G25600 | 28.141 | 199 | 112 | 5 | 91 | 286 | 6 | 176 | 2.61e-14 | 71.2 |
MS.gene09571.t1 | AT4G25600 | 28.358 | 201 | 109 | 6 | 91 | 286 | 15 | 185 | 2.72e-14 | 71.2 |
Find 72 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATTACTTCGATTCCATTTC+AGG | 0.136860 | 5.2:-7732275 | MS.gene09571:intron |
TGTTCTGCACTTGCAAAATT+AGG | 0.198134 | 5.2:+7731494 | None:intergenic |
AACATGGTCTCCCCACCTTC+TGG | 0.295643 | 5.2:+7728148 | None:intergenic |
GCATTCAATCCCGCGGAATA+TGG | 0.304254 | 5.2:-7729752 | MS.gene09571:CDS |
GGGAGCTGCCCCGTTATTAA+AGG | 0.306596 | 5.2:-7725997 | MS.gene09571:CDS |
TTCTTTCTCGCTGGTTTCTT+CGG | 0.322163 | 5.2:-7732541 | MS.gene09571:CDS |
CACTTCTCCCCTTTAATAAC+GGG | 0.340000 | 5.2:+7725988 | None:intergenic |
ATATAACATCCTCCGCTATA+AGG | 0.351944 | 5.2:-7729804 | MS.gene09571:CDS |
TTACCCTTTGGCTCTCTTGT+GGG | 0.364054 | 5.2:+7729729 | None:intergenic |
AAGAATTCACAAACCTGAAA+TGG | 0.370922 | 5.2:+7732262 | None:intergenic |
CCGGATCAATTGTACCATTA+GGG | 0.382344 | 5.2:+7727924 | None:intergenic |
CTTCGTTCTCAAGCTCCAAT+TGG | 0.383586 | 5.2:+7732603 | None:intergenic |
ACCGGATCAATTGTACCATT+AGG | 0.386423 | 5.2:+7727923 | None:intergenic |
GGAGACCATGTTTCCGTTTG+AGG | 0.393798 | 5.2:-7728137 | MS.gene09571:intron |
TCGCGTAACATCAATCTTGA+TGG | 0.411469 | 5.2:+7731431 | None:intergenic |
CAGTTTCTTCCATTACTCTC+AGG | 0.413346 | 5.2:-7732515 | MS.gene09571:intron |
TGCATCTTCTTCTTTCTCGC+TGG | 0.415401 | 5.2:-7732550 | MS.gene09571:CDS |
CGAAAACGGTTAAAGCCAAT+TGG | 0.420066 | 5.2:-7732618 | MS.gene09571:CDS |
GAAAGAAGAAGATGCATAAG+AGG | 0.422059 | 5.2:+7732557 | None:intergenic |
CCACTTCTCCCCTTTAATAA+CGG | 0.432353 | 5.2:+7725987 | None:intergenic |
CCCTAATGGTACAATTGATC+CGG | 0.439660 | 5.2:-7727924 | MS.gene09571:intron |
GATACCTCTCCATGAGTCTT+GGG | 0.445486 | 5.2:+7730611 | None:intergenic |
GGAGCTGCCCCGTTATTAAA+GGG | 0.447230 | 5.2:-7725996 | MS.gene09571:CDS |
CTTACCCTTTGGCTCTCTTG+TGG | 0.448126 | 5.2:+7729728 | None:intergenic |
GGGTTGCTACAAAGTGGATA+AGG | 0.448780 | 5.2:-7725966 | MS.gene09571:CDS |
CAGCGCTTCTGAGGACAAAA+CGG | 0.463571 | 5.2:-7730681 | MS.gene09571:CDS |
TGATACCTCTCCATGAGTCT+TGG | 0.468148 | 5.2:+7730610 | None:intergenic |
TGGCGTGAGAGTGAGATTGC+TGG | 0.489735 | 5.2:-7732362 | MS.gene09571:CDS |
GGTTGCTACAAAGTGGATAA+GGG | 0.497654 | 5.2:-7725965 | MS.gene09571:CDS |
AATCCAAATGAAAGCGAAAA+CGG | 0.504969 | 5.2:-7732632 | None:intergenic |
TCTTGTGGGCCATATTCCGC+GGG | 0.507942 | 5.2:+7729743 | None:intergenic |
GAGCACCGTTTGTTGCATGC+TGG | 0.515078 | 5.2:-7732316 | MS.gene09571:CDS |
AGCGCTTCTGAGGACAAAAC+GGG | 0.516147 | 5.2:-7730680 | MS.gene09571:CDS |
TTGTTGCATGCTGGAGAGTC+CGG | 0.518286 | 5.2:-7732307 | MS.gene09571:CDS |
TAACAGATGTTCCAGAAGGT+GGG | 0.520217 | 5.2:-7728159 | MS.gene09571:CDS |
AACATCCTCCGCTATAAGGT+TGG | 0.521133 | 5.2:-7729800 | MS.gene09571:CDS |
CCGTTATTAAAGGGGAGAAG+TGG | 0.527804 | 5.2:-7725987 | MS.gene09571:CDS |
TAATAACGGGGCAGCTCCCA+TGG | 0.528613 | 5.2:+7726001 | None:intergenic |
TTAACAGATGTTCCAGAAGG+TGG | 0.530944 | 5.2:-7728160 | MS.gene09571:CDS |
AGAAACAGAGGAAGGTACAA+AGG | 0.544545 | 5.2:-7731405 | MS.gene09571:CDS |
ACTCTCCAGCATGCAACAAA+CGG | 0.553944 | 5.2:+7732311 | None:intergenic |
AACAGATGTTCCAGAAGGTG+GGG | 0.556390 | 5.2:-7728158 | MS.gene09571:CDS |
CGAAGTAATGAAATTATCAC+CGG | 0.556524 | 5.2:+7732288 | None:intergenic |
CTCTTGTGGGCCATATTCCG+CGG | 0.560435 | 5.2:+7729742 | None:intergenic |
CGTTATTAAAGGGGAGAAGT+GGG | 0.569773 | 5.2:-7725986 | MS.gene09571:CDS |
CTTTGGCAGACATCACTCCA+TGG | 0.570191 | 5.2:-7726018 | MS.gene09571:intron |
ATGTGATAGCATAATTGAGA+TGG | 0.580962 | 5.2:-7731471 | MS.gene09571:CDS |
ATCAAGCCTCAGAAGGGAGA+CGG | 0.584518 | 5.2:-7727968 | MS.gene09571:CDS |
ATGGCCCACAAGAGAGCCAA+AGG | 0.587118 | 5.2:-7729733 | MS.gene09571:CDS |
TGTGTAGAATGGGTCGAACA+TGG | 0.592846 | 5.2:-7728029 | MS.gene09571:intron |
GAAACAGAGGAAGGTACAAA+GGG | 0.602245 | 5.2:-7731404 | MS.gene09571:CDS |
AGAAGTCCGTCTCCCTTCTG+AGG | 0.603684 | 5.2:+7727962 | None:intergenic |
TTAGGAAAGTATAAAGCGCG+TGG | 0.604523 | 5.2:+7731512 | None:intergenic |
TTTGGCAGACATCACTCCAT+GGG | 0.605744 | 5.2:-7726017 | MS.gene09571:intron |
AGAAGTGGGTTGCTACAAAG+TGG | 0.608156 | 5.2:-7725972 | MS.gene09571:CDS |
TATGTTTATCAGCGCTTCTG+AGG | 0.608404 | 5.2:-7730690 | MS.gene09571:CDS |
TTTGTCCAACCTTATAGCGG+AGG | 0.613087 | 5.2:+7729795 | None:intergenic |
ATCAAGATTGATGTTACGCG+AGG | 0.628769 | 5.2:-7731429 | MS.gene09571:CDS |
TATTTAACAGATGTTCCAGA+AGG | 0.629276 | 5.2:-7728163 | MS.gene09571:CDS |
AAAATCGGTGAAGGATGAGA+CGG | 0.638103 | 5.2:-7732338 | MS.gene09571:CDS |
TGGCCCACAAGAGAGCCAAA+GGG | 0.641180 | 5.2:-7729732 | MS.gene09571:intron |
CGCGAGGGAGAAACAGAGGA+AGG | 0.642901 | 5.2:-7731413 | MS.gene09571:CDS |
TAGCATAATTGAGATGGCAA+AGG | 0.646432 | 5.2:-7731465 | MS.gene09571:CDS |
TAGGAAAGTATAAAGCGCGT+GGG | 0.646893 | 5.2:+7731513 | None:intergenic |
ATGCATAAGAGGAAAACAGA+AGG | 0.650557 | 5.2:+7732568 | None:intergenic |
CTATGATGCATTCAATCCCG+CGG | 0.659764 | 5.2:-7729759 | MS.gene09571:CDS |
GAGCTGCCCCGTTATTAAAG+GGG | 0.661369 | 5.2:-7725995 | MS.gene09571:CDS |
GTACAAAGGGAATCAGAACA+AGG | 0.662305 | 5.2:-7731391 | MS.gene09571:intron |
TCAAGATTGATGTTACGCGA+GGG | 0.665505 | 5.2:-7731428 | MS.gene09571:CDS |
AATTCCCAAGACTCATGGAG+AGG | 0.667424 | 5.2:-7730615 | MS.gene09571:intron |
GTTACGCGAGGGAGAAACAG+AGG | 0.681875 | 5.2:-7731417 | MS.gene09571:CDS |
ACTTCTCCCCTTTAATAACG+GGG | 0.700100 | 5.2:+7725989 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 7725942 | 7732647 | 7725942 | ID=MS.gene09571 |
chr5.2 | mRNA | 7725942 | 7732647 | 7725942 | ID=MS.gene09571.t1;Parent=MS.gene09571 |
chr5.2 | exon | 7732516 | 7732647 | 7732516 | ID=MS.gene09571.t1.exon1;Parent=MS.gene09571.t1 |
chr5.2 | CDS | 7732516 | 7732647 | 7732516 | ID=cds.MS.gene09571.t1;Parent=MS.gene09571.t1 |
chr5.2 | exon | 7732276 | 7732395 | 7732276 | ID=MS.gene09571.t1.exon2;Parent=MS.gene09571.t1 |
chr5.2 | CDS | 7732276 | 7732395 | 7732276 | ID=cds.MS.gene09571.t1;Parent=MS.gene09571.t1 |
chr5.2 | exon | 7731392 | 7731549 | 7731392 | ID=MS.gene09571.t1.exon3;Parent=MS.gene09571.t1 |
chr5.2 | CDS | 7731392 | 7731549 | 7731392 | ID=cds.MS.gene09571.t1;Parent=MS.gene09571.t1 |
chr5.2 | exon | 7730616 | 7730718 | 7730616 | ID=MS.gene09571.t1.exon4;Parent=MS.gene09571.t1 |
chr5.2 | CDS | 7730616 | 7730718 | 7730616 | ID=cds.MS.gene09571.t1;Parent=MS.gene09571.t1 |
chr5.2 | exon | 7729733 | 7729828 | 7729733 | ID=MS.gene09571.t1.exon5;Parent=MS.gene09571.t1 |
chr5.2 | CDS | 7729733 | 7729828 | 7729733 | ID=cds.MS.gene09571.t1;Parent=MS.gene09571.t1 |
chr5.2 | exon | 7728138 | 7728203 | 7728138 | ID=MS.gene09571.t1.exon6;Parent=MS.gene09571.t1 |
chr5.2 | CDS | 7728138 | 7728203 | 7728138 | ID=cds.MS.gene09571.t1;Parent=MS.gene09571.t1 |
chr5.2 | exon | 7727925 | 7728044 | 7727925 | ID=MS.gene09571.t1.exon7;Parent=MS.gene09571.t1 |
chr5.2 | CDS | 7727925 | 7728044 | 7727925 | ID=cds.MS.gene09571.t1;Parent=MS.gene09571.t1 |
chr5.2 | exon | 7725942 | 7726031 | 7725942 | ID=MS.gene09571.t1.exon8;Parent=MS.gene09571.t1 |
chr5.2 | CDS | 7725942 | 7726031 | 7725942 | ID=cds.MS.gene09571.t1;Parent=MS.gene09571.t1 |
Gene Sequence |
Protein sequence |