AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09601

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09601.t1 MTR_5g015490 98.045 358 5 1 1 356 134 491 0.0 730
MS.gene09601.t1 MTR_4g097080 76.177 361 72 7 1 356 153 504 0.0 563
MS.gene09601.t1 MTR_2g099110 55.946 370 138 7 1 356 94 452 1.99e-137 399
MS.gene09601.t1 MTR_2g089100 31.926 379 229 7 1 356 72 444 3.42e-56 190
MS.gene09601.t1 MTR_1g029420 31.653 357 227 8 4 355 248 592 4.21e-52 182
MS.gene09601.t1 MTR_2g082090 32.571 350 217 7 12 355 243 579 7.24e-52 181
MS.gene09601.t1 MTR_5g094450 30.959 365 230 8 2 355 179 532 8.13e-52 180
MS.gene09601.t1 MTR_5g097480 29.945 364 231 8 2 355 195 544 1.09e-51 180
MS.gene09601.t1 MTR_3g056110 30.707 368 223 10 2 355 193 542 2.25e-49 174
MS.gene09601.t1 MTR_3g089055 31.373 357 228 8 4 355 221 565 9.40e-49 172
MS.gene09601.t1 MTR_3g089055 31.373 357 228 8 4 355 226 570 1.09e-48 172
MS.gene09601.t1 MTR_4g095500 29.293 396 235 9 1 356 79 469 5.76e-47 166
MS.gene09601.t1 MTR_2g026250 29.444 360 233 8 3 355 251 596 4.19e-46 166
MS.gene09601.t1 MTR_7g027190 31.649 376 214 12 1 355 320 673 3.10e-45 164
MS.gene09601.t1 MTR_4g133660 29.752 363 231 9 2 354 194 542 1.07e-44 161
MS.gene09601.t1 MTR_5g015950 28.040 403 233 11 1 356 55 447 9.10e-43 154
MS.gene09601.t1 MTR_3g053270 28.040 403 233 11 1 356 55 447 9.10e-43 154
MS.gene09601.t1 MTR_8g442410 30.141 355 232 9 7 355 181 525 1.30e-40 150
MS.gene09601.t1 MTR_3g065980 29.096 354 217 6 16 355 207 540 3.10e-40 149
MS.gene09601.t1 MTR_4g102790 28.453 362 237 11 4 356 315 663 5.87e-40 149
MS.gene09601.t1 MTR_4g064200 29.834 362 234 9 1 356 304 651 1.74e-39 148
MS.gene09601.t1 MTR_7g074650 29.330 358 223 13 4 356 461 793 6.23e-39 147
MS.gene09601.t1 MTR_8g020840 30.688 378 219 13 1 355 191 548 1.02e-37 142
MS.gene09601.t1 MTR_4g077760 30.579 363 218 11 4 355 216 555 3.41e-37 140
MS.gene09601.t1 MTR_5g009080 26.150 413 231 9 4 355 79 478 1.52e-36 138
MS.gene09601.t1 MTR_4g064150 27.019 359 254 4 1 356 381 734 1.30e-34 135
MS.gene09601.t1 MTR_2g097410 29.296 355 235 7 8 356 398 742 3.96e-34 133
MS.gene09601.t1 MTR_2g097310 27.147 361 244 10 3 356 291 639 4.44e-34 132
MS.gene09601.t1 MTR_4g104020 27.027 370 236 11 3 355 168 520 6.35e-34 131
MS.gene09601.t1 MTR_4g064120 28.182 330 225 7 1 325 274 596 2.99e-33 130
MS.gene09601.t1 MTR_4g064160 27.298 359 249 5 1 356 336 685 6.98e-33 129
MS.gene09601.t1 MTR_7g062120 25.348 359 256 5 1 356 392 741 6.28e-32 127
MS.gene09601.t1 MTR_2g097467 25.770 357 250 6 3 356 311 655 6.90e-32 126
MS.gene09601.t1 MTR_4g064180 28.182 330 225 7 1 325 274 596 7.96e-32 126
MS.gene09601.t1 MTR_2g097350 26.039 361 248 9 3 356 293 641 9.54e-32 126
MS.gene09601.t1 MTR_3g022830 23.821 403 242 9 4 355 48 436 2.87e-31 123
MS.gene09601.t1 MTR_2g097390 26.870 361 245 10 3 356 294 642 8.11e-31 123
MS.gene09601.t1 MTR_2g097473 26.479 355 240 7 8 356 316 655 1.03e-30 123
MS.gene09601.t1 MTR_2g097463 26.705 352 243 6 8 356 317 656 1.28e-30 123
MS.gene09601.t1 MTR_4g076020 27.374 358 221 14 4 356 107 430 1.29e-30 121
MS.gene09601.t1 MTR_3g072710 28.232 379 220 14 4 354 145 499 5.51e-27 111
MS.gene09601.t1 MTR_1g069725 27.095 358 227 14 4 354 132 462 6.94e-26 108
MS.gene09601.t1 MTR_1g096030 27.005 374 218 14 12 355 111 459 9.71e-25 105
MS.gene09601.t1 MTR_8g093070 26.361 349 220 15 17 356 177 497 3.02e-23 100
MS.gene09601.t1 MTR_4g076140 31.841 201 127 4 7 206 74 265 3.05e-23 100
MS.gene09601.t1 MTR_2g097380 27.922 308 192 10 3 305 243 525 4.32e-23 100
MS.gene09601.t1 MTR_5g058860 27.596 366 230 11 7 354 148 496 5.58e-23 100
MS.gene09601.t1 MTR_2g034280 25.137 366 244 11 4 355 226 575 6.09e-23 100
MS.gene09601.t1 MTR_2g034260 24.384 365 256 8 1 355 230 584 1.18e-22 99.8
MS.gene09601.t1 MTR_7g057230 27.178 287 195 6 73 354 379 656 2.04e-22 99.0
MS.gene09601.t1 MTR_2g034250 23.967 363 255 8 4 355 233 585 1.73e-20 93.2
MS.gene09601.t1 MTR_1g086970 25.208 361 249 10 3 355 131 478 2.95e-20 92.0
MS.gene09601.t1 MTR_7g109580 24.286 350 252 6 8 355 216 554 3.53e-18 86.3
MS.gene09601.t1 MTR_6g047750 25.568 352 232 10 15 355 330 662 1.60e-17 84.3
MS.gene09601.t1 MTR_4g026485 21.229 358 251 9 4 355 292 624 4.11e-14 73.9
MS.gene09601.t1 MTR_0092s0100 21.563 371 235 9 4 355 395 728 5.53e-12 67.4
MS.gene09601.t1 MTR_0092s0100 21.563 371 235 9 4 355 398 731 5.85e-12 67.4
MS.gene09601.t1 MTR_8g077940 22.715 361 246 10 4 355 205 541 8.98e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09601.t1 AT4G37650 68.835 369 98 6 1 356 166 530 0.0 512
MS.gene09601.t1 AT2G04890 32.123 358 224 8 2 355 71 413 2.79e-58 194
MS.gene09601.t1 AT3G49950 32.432 370 226 9 1 356 50 409 8.13e-50 172
MS.gene09601.t1 AT5G48150 29.050 358 242 6 1 355 142 490 1.60e-49 173
MS.gene09601.t1 AT5G48150 29.050 358 242 6 1 355 142 490 1.60e-49 173
MS.gene09601.t1 AT5G48150 29.050 358 242 6 1 355 142 490 1.60e-49 173
MS.gene09601.t1 AT5G48150 29.050 358 242 6 1 355 142 490 1.60e-49 173
MS.gene09601.t1 AT1G50600 30.874 366 225 10 2 355 177 526 3.66e-49 173
MS.gene09601.t1 AT1G21450 32.603 365 223 8 1 355 242 593 5.56e-49 174
MS.gene09601.t1 AT1G50600 30.874 366 225 10 2 355 248 597 1.04e-48 173
MS.gene09601.t1 AT1G50600 30.874 366 225 10 2 355 252 601 1.13e-48 173
MS.gene09601.t1 AT3G03450 31.778 343 214 7 17 355 219 545 3.36e-48 171
MS.gene09601.t1 AT5G17490 33.431 341 205 8 17 355 196 516 1.10e-47 169
MS.gene09601.t1 AT1G66350 33.239 352 206 11 7 355 181 506 7.42e-47 166
MS.gene09601.t1 AT2G01570 30.029 343 217 10 16 355 259 581 6.26e-41 151
MS.gene09601.t1 AT1G14920 30.321 343 216 9 16 355 207 529 1.28e-40 150
MS.gene09601.t1 AT4G17230 26.316 361 245 8 3 356 180 526 3.90e-38 143
MS.gene09601.t1 AT4G17230 26.316 361 245 8 3 356 180 526 3.90e-38 143
MS.gene09601.t1 AT1G50420 25.610 410 237 6 4 355 80 479 7.71e-38 141
MS.gene09601.t1 AT3G54220 29.558 362 220 15 4 356 316 651 3.14e-36 139
MS.gene09601.t1 AT1G63100 29.863 365 227 11 6 354 302 653 1.08e-35 137
MS.gene09601.t1 AT1G63100 29.863 365 227 11 6 354 277 628 1.13e-35 137
MS.gene09601.t1 AT5G41920 29.805 359 221 14 4 355 66 400 7.60e-34 129
MS.gene09601.t1 AT1G55580 28.198 383 228 11 10 355 73 445 9.54e-34 130
MS.gene09601.t1 AT5G66770 28.846 364 232 10 1 355 239 584 1.09e-33 131
MS.gene09601.t1 AT3G46600 28.011 357 242 8 4 356 27 372 5.69e-33 126
MS.gene09601.t1 AT3G13840 29.810 369 215 13 3 355 170 510 6.93e-33 128
MS.gene09601.t1 AT2G29065 26.575 365 252 9 1 356 272 629 6.49e-32 126
MS.gene09601.t1 AT2G37650 26.705 352 244 6 8 356 374 714 7.01e-32 127
MS.gene09601.t1 AT2G37650 26.705 352 244 6 8 356 362 702 7.31e-32 127
MS.gene09601.t1 AT5G52510 28.134 359 220 9 15 355 302 640 9.18e-32 126
MS.gene09601.t1 AT3G46600 28.011 357 242 8 4 356 203 548 1.15e-31 125
MS.gene09601.t1 AT3G46600 28.011 357 242 8 4 356 235 580 2.17e-31 125
MS.gene09601.t1 AT1G07530 26.111 360 253 6 1 356 416 766 4.92e-31 124
MS.gene09601.t1 AT1G07520 26.271 354 250 7 9 356 182 530 1.18e-29 119
MS.gene09601.t1 AT1G07520 26.271 354 250 7 9 356 182 530 1.18e-29 119
MS.gene09601.t1 AT3G50650 29.539 369 219 11 4 355 198 542 1.97e-29 119
MS.gene09601.t1 AT1G07520 26.271 354 250 7 9 356 346 694 2.56e-29 119
MS.gene09601.t1 AT1G07520 26.271 354 250 7 9 356 347 695 2.64e-29 119
MS.gene09601.t1 AT5G59450 27.119 354 245 6 8 356 254 599 4.00e-29 118
MS.gene09601.t1 AT2G29060 25.348 359 253 8 4 356 344 693 2.61e-27 113
MS.gene09601.t1 AT2G29060 25.348 359 253 8 4 356 307 656 2.76e-27 113
MS.gene09601.t1 AT4G08250 27.759 299 202 9 61 354 187 476 7.60e-24 102
MS.gene09601.t1 AT4G00150 23.514 370 217 13 5 355 232 554 1.56e-12 68.9
MS.gene09601.t1 AT3G60630 24.919 309 199 12 61 355 333 622 2.07e-12 68.6

Find 90 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGGAGGCTGATTTAAATTT+TGG 0.142361 5.2:-7304029 MS.gene09601:CDS
TGAATAACGTTGAATTTAAA+TGG 0.226774 5.2:+7304239 None:intergenic
AAGAGTGTTTGAGATGGTTT+AGG 0.270052 5.2:-7303974 MS.gene09601:CDS
GGCTTTGTTGAGGAGGTATA+AGG 0.272310 5.2:-7303736 MS.gene09601:CDS
TTCGGTCATTCGAGAGAATA+AGG 0.284815 5.2:+7304619 None:intergenic
ACCTTCGAAGGCTTCTAAAA+TGG 0.301815 5.2:+7304460 None:intergenic
TGGGAGAGGGATAGTTGATT+TGG 0.342461 5.2:-7303880 MS.gene09601:CDS
AGGAAGTTTGTGATGATGTT+AGG 0.369294 5.2:-7303758 MS.gene09601:CDS
GAAGGTTCTGGTACCGGCTT+CGG 0.378697 5.2:+7304601 None:intergenic
AGAGTGTTTGAGATGGTTTA+GGG 0.380120 5.2:-7303973 MS.gene09601:CDS
TAGTCCATGGACTAACTTCT+TGG 0.385254 5.2:+7304510 None:intergenic
CGTTGATCGCGTTGCGGCCG+AGG 0.391480 5.2:-7304070 MS.gene09601:CDS
CTTCCACGTCAAGAATATTC+CGG 0.409628 5.2:+7303683 None:intergenic
GTTAGTCCATGGACTACTTT+CGG 0.413327 5.2:-7304503 MS.gene09601:CDS
AGCTAGGGTTCTGAAGGTTC+TGG 0.415747 5.2:+7304589 None:intergenic
GAAGGAAATTGGTGCTAGAA+TGG 0.434419 5.2:-7304288 MS.gene09601:CDS
AACGAACTAAGCTCCCCTTA+TGG 0.445036 5.2:-7304680 MS.gene09601:CDS
TTCTCTCGAATGACCGAAGC+CGG 0.449633 5.2:-7304614 MS.gene09601:CDS
TCACGGCGTTTGCATGGTGG+AGG 0.454306 5.2:-7303804 MS.gene09601:CDS
TTGATGCTTGAAAGGGAAGC+TGG 0.455749 5.2:-7303900 MS.gene09601:CDS
CAGTGACGATGGTGGTTAAA+CGG 0.455896 5.2:+7304336 None:intergenic
ATGTTAGGGCTTTGTTGAGG+AGG 0.458311 5.2:-7303743 MS.gene09601:CDS
TTCGGCCATGTTGCATGCAA+TGG 0.459991 5.2:-7304485 MS.gene09601:CDS
TTTGTTCTATGTCACCATAA+GGG 0.462505 5.2:+7304666 None:intergenic
CGGTGGTGTGGGCCAGTGCA+TGG 0.470323 5.2:-7303653 MS.gene09601:CDS
CATTCAGTAACAGTTGGTAA+TGG 0.475130 5.2:-7304128 MS.gene09601:CDS
CATGCACTGGCCCACACCAC+CGG 0.476107 5.2:+7303654 None:intergenic
GGAAGTTTGTGATGATGTTA+GGG 0.478484 5.2:-7303757 MS.gene09601:CDS
CACGGCGTTTGCATGGTGGA+GGG 0.480736 5.2:-7303803 MS.gene09601:CDS
GGTTCTGAAGGTTCTGGTAC+CGG 0.480940 5.2:+7304595 None:intergenic
AAACGCTCGTTACTCGTCTT+CGG 0.484291 5.2:+7303921 None:intergenic
ATGGTTTAGGGTTTACTTTG+AGG 0.492134 5.2:-7303961 MS.gene09601:CDS
GATGGATATGAATTTGTGAA+TGG 0.492688 5.2:-7304002 MS.gene09601:CDS
GCATGGTGGAGGGTTTAATA+CGG 0.512491 5.2:-7303793 MS.gene09601:CDS
TGATTTGGTGGCATGTGCTC+CGG 0.516469 5.2:-7303865 MS.gene09601:CDS
TTATCAAGGCCTCCATGCAC+TGG 0.517596 5.2:+7303641 None:intergenic
GGAAGGAACAACCGGTGGTG+TGG 0.520705 5.2:-7303665 MS.gene09601:CDS
GAGAGGGATAGTTGATTTGG+TGG 0.522738 5.2:-7303877 MS.gene09601:CDS
CTTGACGTGGAAGGAACAAC+CGG 0.523785 5.2:-7303673 MS.gene09601:CDS
AGGAAGGGTGGTCGATGATA+CGG 0.526878 5.2:-7303716 MS.gene09601:CDS
CTCCGTTCAATCGACTCTGC+CGG 0.527978 5.2:+7303846 None:intergenic
ACGAGCGTTTGATGCTTGAA+AGG 0.528089 5.2:-7303908 MS.gene09601:CDS
ATTCAACGTTATTCATCACT+CGG 0.529452 5.2:-7304231 MS.gene09601:CDS
GAAGGAACAACCGGTGGTGT+GGG 0.535300 5.2:-7303664 MS.gene09601:CDS
GTCGATTGAACGGAGAGAAA+CGG 0.535584 5.2:-7303838 MS.gene09601:CDS
TCAACCACTGTTACTATCCT+CGG 0.540676 5.2:+7304053 None:intergenic
TTGTTCTATGTCACCATAAG+GGG 0.542773 5.2:+7304667 None:intergenic
CTTGAAAGGGAAGCTGGGAG+AGG 0.543069 5.2:-7303894 MS.gene09601:CDS
CGGAATATTCTTGACGTGGA+AGG 0.543303 5.2:-7303682 MS.gene09601:CDS
CGAGCGTTTGATGCTTGAAA+GGG 0.543796 5.2:-7303907 MS.gene09601:CDS
GGAGAGAAACGGCGGTGAGA+TGG 0.549109 5.2:-7303827 MS.gene09601:CDS
TTAACCACCATCGTCACTGC+TGG 0.551969 5.2:-7304332 MS.gene09601:CDS
GATAGTAACAGTGGTTGAAG+AGG 0.553960 5.2:-7304048 MS.gene09601:CDS
TGCTGAAGCTAGGGTTCTGA+AGG 0.554762 5.2:+7304583 None:intergenic
GCTTTGCATTCAGTAACAGT+TGG 0.557029 5.2:-7304134 MS.gene09601:CDS
AGATGGTCACGGCGTTTGCA+TGG 0.559260 5.2:-7303810 MS.gene09601:CDS
AATTCCAAGAAGTTAGTCCA+TGG 0.567956 5.2:-7304514 MS.gene09601:CDS
CAACTTAGAATCACCTTCGA+AGG 0.574160 5.2:+7304448 None:intergenic
ATGATACGGTGTAATGATGC+CGG 0.576413 5.2:-7303702 MS.gene09601:CDS
ACCACCATCGTCACTGCTGG+TGG 0.581472 5.2:-7304329 MS.gene09601:CDS
AGTAACAGTGGTTGAAGAGG+AGG 0.584206 5.2:-7304045 MS.gene09601:CDS
CTCCGGCAGAGTCGATTGAA+CGG 0.585476 5.2:-7303848 MS.gene09601:CDS
TGATGCTTGAAAGGGAAGCT+GGG 0.585745 5.2:-7303899 MS.gene09601:CDS
TGTTGAGGAGGTATAAGGAA+GGG 0.588341 5.2:-7303731 MS.gene09601:CDS
TTGTTGAGGAGGTATAAGGA+AGG 0.589974 5.2:-7303732 MS.gene09601:CDS
CGGAGTATCATCAGCACGAG+TGG 0.595472 5.2:+7304364 None:intergenic
GTAACAGTTGGTAATGGTAA+CGG 0.598007 5.2:-7304122 MS.gene09601:CDS
TCATTCGAGAGAATAAGGCT+TGG 0.601622 5.2:+7304624 None:intergenic
TTGAAAGGGAAGCTGGGAGA+GGG 0.603420 5.2:-7303893 MS.gene09601:CDS
TTCAACGTTATTCATCACTC+GGG 0.607328 5.2:-7304230 MS.gene09601:CDS
ATGATGTTAGGGCTTTGTTG+AGG 0.607674 5.2:-7303746 MS.gene09601:CDS
ACATGGCCGAAAGTAGTCCA+TGG 0.613056 5.2:+7304497 None:intergenic
AAGCTATCAACGCGTCGCGA+CGG 0.617261 5.2:+7304093 None:intergenic
TGGCGCCATTGCATGCAACA+TGG 0.621243 5.2:+7304480 None:intergenic
TGAGGAGGTATAAGGAAGGG+TGG 0.622191 5.2:-7303728 MS.gene09601:CDS
TAGCTTCGTTGATCGCGTTG+CGG 0.632402 5.2:-7304076 MS.gene09601:CDS
TGGTCACGGCGTTTGCATGG+TGG 0.640251 5.2:-7303807 MS.gene09601:CDS
AAACGGCGGTGAGATGGTCA+CGG 0.645102 5.2:-7303821 MS.gene09601:CDS
TAATACGGTGGCGTTTAGTG+AGG 0.648084 5.2:-7303778 MS.gene09601:CDS
AGAACCACCAGCAGTGACGA+TGG 0.652328 5.2:+7304325 None:intergenic
TGGTGGAGGGTTTAATACGG+TGG 0.662791 5.2:-7303790 MS.gene09601:CDS
ATGCCGGAATATTCTTGACG+TGG 0.670161 5.2:-7303686 MS.gene09601:CDS
GTAACACTTATTGCACTCAG+TGG 0.674128 5.2:-7304409 MS.gene09601:CDS
ATGGTGGTTAAACGGAGGTG+CGG 0.674756 5.2:+7304344 None:intergenic
TGGTGTGGGCCAGTGCATGG+AGG 0.695562 5.2:-7303650 MS.gene09601:CDS
GACGTGGAAGGAACAACCGG+TGG 0.699506 5.2:-7303670 MS.gene09601:CDS
GCGGCCGAGGATAGTAACAG+TGG 0.704672 5.2:-7304057 MS.gene09601:CDS
ACCACCAGCAGTGACGATGG+TGG 0.722652 5.2:+7304328 None:intergenic
GATTGAACGGAGAGAAACGG+CGG 0.736491 5.2:-7303835 MS.gene09601:CDS
TGACGATGGTGGTTAAACGG+AGG 0.736521 5.2:+7304339 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTTCTGATTTAAATTTTT+TGG - chr5.2:7304132-7304151 MS.gene09601:CDS 15.0%
!! TGAATAACGTTGAATTTAAA+TGG + chr5.2:7304100-7304119 None:intergenic 20.0%
!!! GATTTAAATTTTGGTAATGA+TGG - chr5.2:7304316-7304335 MS.gene09601:CDS 20.0%
! CAAAAAGTTATGAAGGAAAT+TGG - chr5.2:7304037-7304056 MS.gene09601:CDS 25.0%
! TTCTGTTCAAAAAGTTATGA+AGG - chr5.2:7304030-7304049 MS.gene09601:CDS 25.0%
ATTCAACGTTATTCATCACT+CGG - chr5.2:7304105-7304124 MS.gene09601:CDS 30.0%
GAAAAATTCGCTAGACTTAT+GGG - chr5.2:7304070-7304089 MS.gene09601:CDS 30.0%
GATGGATATGAATTTGTGAA+TGG - chr5.2:7304334-7304353 MS.gene09601:CDS 30.0%
TTTGTTCTATGTCACCATAA+GGG + chr5.2:7303673-7303692 None:intergenic 30.0%
! GACTAACTTCTTGGAATTTT+AGG + chr5.2:7303820-7303839 None:intergenic 30.0%
! TTTTGTTCTATGTCACCATA+AGG + chr5.2:7303674-7303693 None:intergenic 30.0%
AATTCCAAGAAGTTAGTCCA+TGG - chr5.2:7303822-7303841 MS.gene09601:CDS 35.0%
GGAAAAATTCGCTAGACTTA+TGG - chr5.2:7304069-7304088 MS.gene09601:CDS 35.0%
TTCAACGTTATTCATCACTC+GGG - chr5.2:7304106-7304125 MS.gene09601:CDS 35.0%
TTGTTCTATGTCACCATAAG+GGG + chr5.2:7303672-7303691 None:intergenic 35.0%
! AGAGTGTTTGAGATGGTTTA+GGG - chr5.2:7304363-7304382 MS.gene09601:CDS 35.0%
! AGGAAGTTTGTGATGATGTT+AGG - chr5.2:7304578-7304597 MS.gene09601:CDS 35.0%
! ATGGTTTAGGGTTTACTTTG+AGG - chr5.2:7304375-7304394 MS.gene09601:CDS 35.0%
! GGAAGTTTGTGATGATGTTA+GGG - chr5.2:7304579-7304598 MS.gene09601:CDS 35.0%
! TTTTTCTGATGCTGAAGCTA+GGG + chr5.2:7303765-7303784 None:intergenic 35.0%
!! AAGAGTGTTTGAGATGGTTT+AGG - chr5.2:7304362-7304381 MS.gene09601:CDS 35.0%
!! CATTCAGTAACAGTTGGTAA+TGG - chr5.2:7304208-7304227 MS.gene09601:CDS 35.0%
!! GAGGAGGCTGATTTAAATTT+TGG - chr5.2:7304307-7304326 MS.gene09601:CDS 35.0%
!! GTAACAGTTGGTAATGGTAA+CGG - chr5.2:7304214-7304233 MS.gene09601:CDS 35.0%
!!! GTTTTGAAGAGTGTTTGAGA+TGG - chr5.2:7304356-7304375 MS.gene09601:CDS 35.0%
!!! TTTTTTCTGATGCTGAAGCT+AGG + chr5.2:7303766-7303785 None:intergenic 35.0%
ATGATACGGTGTAATGATGC+CGG - chr5.2:7304634-7304653 MS.gene09601:CDS 40.0%
CAACTTAGAATCACCTTCGA+AGG + chr5.2:7303891-7303910 None:intergenic 40.0%
CTTCCACGTCAAGAATATTC+CGG + chr5.2:7304656-7304675 None:intergenic 40.0%
GATAGTAACAGTGGTTGAAG+AGG - chr5.2:7304288-7304307 MS.gene09601:CDS 40.0%
GCTTTGCATTCAGTAACAGT+TGG - chr5.2:7304202-7304221 MS.gene09601:CDS 40.0%
GTAACACTTATTGCACTCAG+TGG - chr5.2:7303927-7303946 MS.gene09601:CDS 40.0%
TCAACCACTGTTACTATCCT+CGG + chr5.2:7304286-7304305 None:intergenic 40.0%
TCATTCGAGAGAATAAGGCT+TGG + chr5.2:7303715-7303734 None:intergenic 40.0%
TTCGGTCATTCGAGAGAATA+AGG + chr5.2:7303720-7303739 None:intergenic 40.0%
! ACCTTCGAAGGCTTCTAAAA+TGG + chr5.2:7303879-7303898 None:intergenic 40.0%
! GTTAGTCCATGGACTACTTT+CGG - chr5.2:7303833-7303852 MS.gene09601:CDS 40.0%
! TAGTCCATGGACTAACTTCT+TGG + chr5.2:7303829-7303848 None:intergenic 40.0%
! TGTTGAGGAGGTATAAGGAA+GGG - chr5.2:7304605-7304624 MS.gene09601:CDS 40.0%
! TTGTTGAGGAGGTATAAGGA+AGG - chr5.2:7304604-7304623 MS.gene09601:CDS 40.0%
!! ATGATGTTAGGGCTTTGTTG+AGG - chr5.2:7304590-7304609 MS.gene09601:CDS 40.0%
!! GAAGGAAATTGGTGCTAGAA+TGG - chr5.2:7304048-7304067 MS.gene09601:CDS 40.0%
AAACGCTCGTTACTCGTCTT+CGG + chr5.2:7304418-7304437 None:intergenic 45.0%
AACGAACTAAGCTCCCCTTA+TGG - chr5.2:7303656-7303675 MS.gene09601:CDS 45.0%
ACGAGCGTTTGATGCTTGAA+AGG - chr5.2:7304428-7304447 MS.gene09601:CDS 45.0%
AGTAACAGTGGTTGAAGAGG+AGG - chr5.2:7304291-7304310 MS.gene09601:CDS 45.0%
ATGCCGGAATATTCTTGACG+TGG - chr5.2:7304650-7304669 MS.gene09601:CDS 45.0%
CGAGCGTTTGATGCTTGAAA+GGG - chr5.2:7304429-7304448 MS.gene09601:CDS 45.0%
CGGAATATTCTTGACGTGGA+AGG - chr5.2:7304654-7304673 MS.gene09601:CDS 45.0%
GTCGATTGAACGGAGAGAAA+CGG - chr5.2:7304498-7304517 MS.gene09601:CDS 45.0%
TAATACGGTGGCGTTTAGTG+AGG - chr5.2:7304558-7304577 MS.gene09601:CDS 45.0%
TGATGCTTGAAAGGGAAGCT+GGG - chr5.2:7304437-7304456 MS.gene09601:CDS 45.0%
TGGGAGAGGGATAGTTGATT+TGG - chr5.2:7304456-7304475 MS.gene09601:CDS 45.0%
TTGATGCTTGAAAGGGAAGC+TGG - chr5.2:7304436-7304455 MS.gene09601:CDS 45.0%
! CAGTGACGATGGTGGTTAAA+CGG + chr5.2:7304003-7304022 None:intergenic 45.0%
! GCATGGTGGAGGGTTTAATA+CGG - chr5.2:7304543-7304562 MS.gene09601:CDS 45.0%
!! ATGTTAGGGCTTTGTTGAGG+AGG - chr5.2:7304593-7304612 MS.gene09601:CDS 45.0%
!! GAGAGGGATAGTTGATTTGG+TGG - chr5.2:7304459-7304478 MS.gene09601:CDS 45.0%
!! GCCATTTTAGAAGCCTTCGA+AGG - chr5.2:7303875-7303894 MS.gene09601:CDS 45.0%
!! GGCTTTGTTGAGGAGGTATA+AGG - chr5.2:7304600-7304619 MS.gene09601:CDS 45.0%
ACATGGCCGAAAGTAGTCCA+TGG + chr5.2:7303842-7303861 None:intergenic 50.0%
AGGAAGGGTGGTCGATGATA+CGG - chr5.2:7304620-7304639 MS.gene09601:CDS 50.0%
ATGGTGGTTAAACGGAGGTG+CGG + chr5.2:7303995-7304014 None:intergenic 50.0%
CTTGACGTGGAAGGAACAAC+CGG - chr5.2:7304663-7304682 MS.gene09601:CDS 50.0%
GATTGAACGGAGAGAAACGG+CGG - chr5.2:7304501-7304520 MS.gene09601:CDS 50.0%
TAGCTTCGTTGATCGCGTTG+CGG - chr5.2:7304260-7304279 MS.gene09601:CDS 50.0%
TGGTGGAGGGTTTAATACGG+TGG - chr5.2:7304546-7304565 MS.gene09601:CDS 50.0%
TTAACCACCATCGTCACTGC+TGG - chr5.2:7304004-7304023 MS.gene09601:CDS 50.0%
TTCGGCCATGTTGCATGCAA+TGG - chr5.2:7303851-7303870 MS.gene09601:CDS 50.0%
TTCTCTCGAATGACCGAAGC+CGG - chr5.2:7303722-7303741 MS.gene09601:CDS 50.0%
TTGAAAGGGAAGCTGGGAGA+GGG - chr5.2:7304443-7304462 MS.gene09601:CDS 50.0%
! GCCAACGCTTCAAAAAGCGT+TGG + chr5.2:7303953-7303972 None:intergenic 50.0%
! TGACGATGGTGGTTAAACGG+AGG + chr5.2:7304000-7304019 None:intergenic 50.0%
! TGAGGAGGTATAAGGAAGGG+TGG - chr5.2:7304608-7304627 MS.gene09601:CDS 50.0%
! TGCTGAAGCTAGGGTTCTGA+AGG + chr5.2:7303756-7303775 None:intergenic 50.0%
!! AGCTAGGGTTCTGAAGGTTC+TGG + chr5.2:7303750-7303769 None:intergenic 50.0%
!! GGTTCTGAAGGTTCTGGTAC+CGG + chr5.2:7303744-7303763 None:intergenic 50.0%
!! TGATTTGGTGGCATGTGCTC+CGG - chr5.2:7304471-7304490 MS.gene09601:CDS 50.0%
!!! GCCAACGCTTTTTGAAGCGT+TGG - chr5.2:7303949-7303968 MS.gene09601:CDS 50.0%
AAACGGCGGTGAGATGGTCA+CGG - chr5.2:7304515-7304534 MS.gene09601:CDS 55.0%
AAGCTATCAACGCGTCGCGA+CGG + chr5.2:7304246-7304265 None:intergenic 55.0%
AGAACCACCAGCAGTGACGA+TGG + chr5.2:7304014-7304033 None:intergenic 55.0%
AGATGGTCACGGCGTTTGCA+TGG - chr5.2:7304526-7304545 MS.gene09601:CDS 55.0%
CTCCGGCAGAGTCGATTGAA+CGG - chr5.2:7304488-7304507 MS.gene09601:CDS 55.0%
CTTGAAAGGGAAGCTGGGAG+AGG - chr5.2:7304442-7304461 MS.gene09601:CDS 55.0%
GAAGGAACAACCGGTGGTGT+GGG - chr5.2:7304672-7304691 MS.gene09601:CDS 55.0%
TGGCGCCATTGCATGCAACA+TGG + chr5.2:7303859-7303878 None:intergenic 55.0%
! CGGAGTATCATCAGCACGAG+TGG + chr5.2:7303975-7303994 None:intergenic 55.0%
! CTCCGTTCAATCGACTCTGC+CGG + chr5.2:7304493-7304512 None:intergenic 55.0%
!! GAAGGTTCTGGTACCGGCTT+CGG + chr5.2:7303738-7303757 None:intergenic 55.0%
ACCACCAGCAGTGACGATGG+TGG + chr5.2:7304011-7304030 None:intergenic 60.0%
ACCACCATCGTCACTGCTGG+TGG - chr5.2:7304007-7304026 MS.gene09601:CDS 60.0%
GACGTGGAAGGAACAACCGG+TGG - chr5.2:7304666-7304685 MS.gene09601:CDS 60.0%
GCGGCCGAGGATAGTAACAG+TGG - chr5.2:7304279-7304298 MS.gene09601:CDS 60.0%
GGAAGGAACAACCGGTGGTG+TGG - chr5.2:7304671-7304690 MS.gene09601:CDS 60.0%
GGAGAGAAACGGCGGTGAGA+TGG - chr5.2:7304509-7304528 MS.gene09601:CDS 60.0%
TCACGGCGTTTGCATGGTGG+AGG - chr5.2:7304532-7304551 MS.gene09601:CDS 60.0%
TGGTCACGGCGTTTGCATGG+TGG - chr5.2:7304529-7304548 MS.gene09601:CDS 60.0%
! CACGGCGTTTGCATGGTGGA+GGG - chr5.2:7304533-7304552 MS.gene09601:CDS 60.0%
TGGTGTGGGCCAGTGCATGG+AGG - chr5.2:7304686-7304705 MS.gene09601:CDS 65.0%
! CATGCACTGGCCCACACCAC+CGG + chr5.2:7304685-7304704 None:intergenic 65.0%
CGGTGGTGTGGGCCAGTGCA+TGG - chr5.2:7304683-7304702 MS.gene09601:CDS 70.0%
CGTTGATCGCGTTGCGGCCG+AGG - chr5.2:7304266-7304285 MS.gene09601:CDS 70.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 7303644 7304714 7303644 ID=MS.gene09601
chr5.2 mRNA 7303644 7304714 7303644 ID=MS.gene09601.t1;Parent=MS.gene09601
chr5.2 exon 7303644 7304714 7303644 ID=MS.gene09601.t1.exon1;Parent=MS.gene09601.t1
chr5.2 CDS 7303644 7304714 7303644 ID=cds.MS.gene09601.t1;Parent=MS.gene09601.t1
Gene Sequence

>MS.gene09601

ATGTGGATGCTCAACGAACTAAGCTCCCCTTATGGTGACATAGAACAAAAACTAGCTGCATATTTTCTCCAAGCCTTATTCTCTCGAATGACCGAAGCCGGTACCAGAACCTTCAGAACCCTAGCTTCAGCATCAGAAAAAACTTGCTCATTCGAATCAACACGAAAAACAGTCCTAAAATTCCAAGAAGTTAGTCCATGGACTACTTTCGGCCATGTTGCATGCAATGGCGCCATTTTAGAAGCCTTCGAAGGTGATTCTAAGTTGCACATAATTGATATTAGTAACACTTATTGCACTCAGTGGCCAACGCTTTTTGAAGCGTTGGCCACTCGTGCTGATGATACTCCGCACCTCCGTTTAACCACCATCGTCACTGCTGGTGGTTCTGTTCAAAAAGTTATGAAGGAAATTGGTGCTAGAATGGAAAAATTCGCTAGACTTATGGGAGTTCCATTTAAATTCAACGTTATTCATCACTCGGGCGATCTTTCTGATTTAAATTTTTTGGATTTAGATATTAATGAAGATGAAGCTTTAGCTGTTAATTGTGTTAATGCTTTGCATTCAGTAACAGTTGGTAATGGTAACGGTAATAACCGTCGCGACGCGTTGATAGCTTCGTTGATCGCGTTGCGGCCGAGGATAGTAACAGTGGTTGAAGAGGAGGCTGATTTAAATTTTGGTAATGATGGATATGAATTTGTGAATGGTTTTGAAGAGTGTTTGAGATGGTTTAGGGTTTACTTTGAGGCATTAGAAGAGAGTTTTCCGAAGACGAGTAACGAGCGTTTGATGCTTGAAAGGGAAGCTGGGAGAGGGATAGTTGATTTGGTGGCATGTGCTCCGGCAGAGTCGATTGAACGGAGAGAAACGGCGGTGAGATGGTCACGGCGTTTGCATGGTGGAGGGTTTAATACGGTGGCGTTTAGTGAGGAAGTTTGTGATGATGTTAGGGCTTTGTTGAGGAGGTATAAGGAAGGGTGGTCGATGATACGGTGTAATGATGCCGGAATATTCTTGACGTGGAAGGAACAACCGGTGGTGTGGGCCAGTGCATGGAGGCCTTGA
Protein sequence

>MS.gene09601.t1

MWMLNELSSPYGDIEQKLAAYFLQALFSRMTEAGTRTFRTLASASEKTCSFESTRKTVLKFQEVSPWTTFGHVACNGAILEAFEGDSKLHIIDISNTYCTQWPTLFEALATRADDTPHLRLTTIVTAGGSVQKVMKEIGARMEKFARLMGVPFKFNVIHHSGDLSDLNFLDLDINEDEALAVNCVNALHSVTVGNGNGNNRRDALIASLIALRPRIVTVVEEEADLNFGNDGYEFVNGFEECLRWFRVYFEALEESFPKTSNERLMLEREAGRGIVDLVACAPAESIERRETAVRWSRRLHGGGFNTVAFSEEVCDDVRALLRRYKEGWSMIRCNDAGIFLTWKEQPVVWASAWRP