Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09610.t1 | XP_003611556.1 | 98.2 | 385 | 7 | 0 | 1 | 385 | 15 | 399 | 5.50E-232 | 813.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09610.t1 | Q564G7 | 64.6 | 393 | 122 | 4 | 1 | 383 | 1 | 386 | 2.6e-153 | 543.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09610.t1 | G7K2G3 | 98.2 | 385 | 7 | 0 | 1 | 385 | 15 | 399 | 4.0e-232 | 813.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene09610 | 0.857703 | 1.36E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09610.t1 | MTR_5g015260 | 98.182 | 385 | 7 | 0 | 1 | 385 | 15 | 399 | 0.0 | 792 |
| MS.gene09610.t1 | MTR_4g097240 | 63.824 | 387 | 127 | 4 | 7 | 385 | 8 | 389 | 0.0 | 518 |
| MS.gene09610.t1 | MTR_4g097230 | 56.970 | 330 | 130 | 3 | 67 | 390 | 60 | 383 | 3.20e-141 | 409 |
| MS.gene09610.t1 | MTR_4g108940 | 47.003 | 317 | 129 | 6 | 71 | 384 | 100 | 380 | 7.15e-99 | 301 |
| MS.gene09610.t1 | MTR_4g119880 | 45.833 | 312 | 132 | 5 | 76 | 384 | 107 | 384 | 1.26e-98 | 301 |
| MS.gene09610.t1 | MTR_7g108675 | 45.928 | 307 | 129 | 5 | 81 | 384 | 124 | 396 | 2.08e-97 | 298 |
| MS.gene09610.t1 | MTR_8g058553 | 45.928 | 307 | 129 | 5 | 81 | 384 | 124 | 396 | 5.77e-97 | 300 |
| MS.gene09610.t1 | MTR_3g037340 | 40.000 | 390 | 186 | 9 | 5 | 384 | 34 | 385 | 2.38e-94 | 290 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09610.t1 | AT2G22900 | 62.694 | 386 | 141 | 2 | 1 | 385 | 16 | 399 | 1.43e-175 | 497 |
| MS.gene09610.t1 | AT4G37690 | 60.677 | 384 | 146 | 2 | 1 | 383 | 1 | 380 | 2.85e-174 | 493 |
| MS.gene09610.t1 | AT5G07720 | 40.617 | 389 | 186 | 6 | 3 | 382 | 35 | 387 | 4.04e-103 | 313 |
| MS.gene09610.t1 | AT3G62720 | 47.883 | 307 | 123 | 5 | 81 | 384 | 117 | 389 | 2.99e-99 | 303 |
| MS.gene09610.t1 | AT3G62720 | 47.883 | 307 | 123 | 5 | 81 | 384 | 117 | 389 | 2.99e-99 | 303 |
| MS.gene09610.t1 | AT1G74380 | 45.631 | 309 | 132 | 4 | 76 | 382 | 114 | 388 | 5.10e-98 | 300 |
| MS.gene09610.t1 | AT1G18690 | 43.275 | 342 | 156 | 5 | 43 | 382 | 141 | 446 | 1.99e-97 | 300 |
| MS.gene09610.t1 | AT1G18690 | 43.275 | 342 | 156 | 5 | 43 | 382 | 141 | 446 | 1.99e-97 | 300 |
| MS.gene09610.t1 | AT1G18690 | 43.275 | 342 | 156 | 5 | 43 | 382 | 141 | 446 | 1.99e-97 | 300 |
| MS.gene09610.t1 | AT1G18690 | 43.275 | 342 | 156 | 5 | 43 | 382 | 141 | 446 | 1.99e-97 | 300 |
| MS.gene09610.t1 | AT4G02500 | 44.872 | 312 | 135 | 3 | 76 | 384 | 113 | 390 | 6.44e-97 | 297 |
| MS.gene09610.t1 | AT4G38310 | 69.231 | 117 | 35 | 1 | 64 | 179 | 1 | 117 | 1.34e-55 | 179 |
Find 106 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCAGATCCACTCTGCTTC+TGG | 0.193415 | 5.2:+7191168 | None:intergenic |
| TTCATCCCAGTCGTCTATTT+TGG | 0.194915 | 5.2:+7191449 | None:intergenic |
| TCCTAAGATGTTTGCCTATT+GGG | 0.205576 | 5.2:-7191229 | MS.gene09610:CDS |
| TATAGAAGAAGATTTGTTTC+TGG | 0.226424 | 5.2:+7191686 | None:intergenic |
| ATCCTAAGATGTTTGCCTAT+TGG | 0.304152 | 5.2:-7191230 | MS.gene09610:CDS |
| TTACCCCATTCTTCATAATC+TGG | 0.308324 | 5.2:+7190937 | None:intergenic |
| GTCATGGTATACTCCATTTC+AGG | 0.314443 | 5.2:+7191474 | None:intergenic |
| ATAGAAGAAGATTTGTTTCT+GGG | 0.318466 | 5.2:+7191687 | None:intergenic |
| ATGGAGGCTTGGGCTGGAAT+GGG | 0.324947 | 5.2:-7190970 | MS.gene09610:CDS |
| CATGGAGGCTTGGGCTGGAA+TGG | 0.334539 | 5.2:-7190971 | MS.gene09610:CDS |
| TTAAGGTGAGGTTGTCGTTT+GGG | 0.336884 | 5.2:+7191577 | None:intergenic |
| AATATTACTTCGAGGGGTAT+TGG | 0.338476 | 5.2:-7190795 | MS.gene09610:CDS |
| GTGGATTACTCTCGTATTCA+TGG | 0.344402 | 5.2:-7191285 | MS.gene09610:CDS |
| TCTGATGGCTTCCTCTTCCT+TGG | 0.345544 | 5.2:-7191657 | MS.gene09610:CDS |
| TCAATGGTCATTAGATTTCA+TGG | 0.346153 | 5.2:-7190989 | MS.gene09610:CDS |
| CAGGATCATCGTAGAATGTT+TGG | 0.347067 | 5.2:+7191493 | None:intergenic |
| AACAACAAATGGTCACCTAT+TGG | 0.350530 | 5.2:+7191327 | None:intergenic |
| GTGAGGTTGTCGTTTGGGAT+GGG | 0.352772 | 5.2:+7191582 | None:intergenic |
| TCTTCATAATCTGGGCTTTG+TGG | 0.354799 | 5.2:+7190946 | None:intergenic |
| GATCATAACCTTGTTGTTCA+TGG | 0.356395 | 5.2:-7191084 | MS.gene09610:CDS |
| GCCCAATAGGCAAACATCTT+AGG | 0.358296 | 5.2:+7191228 | None:intergenic |
| ATCATTGCAGCTTTCACAAC+AGG | 0.362566 | 5.2:+7191198 | None:intergenic |
| ATTAGATTTCATGGAGGCTT+GGG | 0.362925 | 5.2:-7190980 | MS.gene09610:CDS |
| GCGTATTAGAGGTGGGGTTT+TGG | 0.364281 | 5.2:-7190202 | MS.gene09610:CDS |
| ATATTACTTCGAGGGGTATT+GGG | 0.374107 | 5.2:-7190794 | MS.gene09610:CDS |
| CATTAGATTTCATGGAGGCT+TGG | 0.381012 | 5.2:-7190981 | MS.gene09610:CDS |
| GGTGAGGTTGTCGTTTGGGA+TGG | 0.382979 | 5.2:+7191581 | None:intergenic |
| ACCAGATCCACTCTGCTTCT+GGG | 0.383710 | 5.2:+7191169 | None:intergenic |
| GAAGATTTGTTTCTGGGAAT+GGG | 0.385239 | 5.2:+7191693 | None:intergenic |
| TATTTGAAAGATGCTGGTTA+TGG | 0.388530 | 5.2:-7190646 | MS.gene09610:CDS |
| AGAAGATTTGTTTCTGGGAA+TGG | 0.391546 | 5.2:+7191692 | None:intergenic |
| TACCCCATTCTTCATAATCT+GGG | 0.392557 | 5.2:+7190938 | None:intergenic |
| TGAAGAATCTTAACAACAAA+TGG | 0.394171 | 5.2:+7191316 | None:intergenic |
| CTGGTTATGGTAAAGGAAGT+TGG | 0.399264 | 5.2:-7190633 | MS.gene09610:CDS |
| TGAGGTTGTCGTTTGGGATG+GGG | 0.405083 | 5.2:+7191583 | None:intergenic |
| GAAGAGTATTTGAAAGATGC+TGG | 0.407850 | 5.2:-7190652 | MS.gene09610:CDS |
| CTTCATAATCTGGGCTTTGT+GGG | 0.412052 | 5.2:+7190947 | None:intergenic |
| TCTTCTATATTTCTCTCTGA+TGG | 0.418803 | 5.2:-7191672 | MS.gene09610:CDS |
| ACCCAGAAGCAGAGTGGATC+TGG | 0.422459 | 5.2:-7191170 | MS.gene09610:CDS |
| TTTAAGGTGAGGTTGTCGTT+TGG | 0.424610 | 5.2:+7191576 | None:intergenic |
| CATGAGAAACGGAGCTGGAC+CGG | 0.428443 | 5.2:-7191045 | MS.gene09610:CDS |
| GATGGCTTCCTCTTCCTTGG+AGG | 0.432600 | 5.2:-7191654 | MS.gene09610:CDS |
| AGCAAAGGAAAGAGTGTTGA+TGG | 0.438346 | 5.2:-7191382 | MS.gene09610:CDS |
| ACGCTGGTGTGTTCTTGATC+AGG | 0.441615 | 5.2:-7191017 | MS.gene09610:CDS |
| ATAACCTTGTTGTTCATGGC+TGG | 0.442241 | 5.2:-7191080 | MS.gene09610:CDS |
| AAAGATGCTGGTTATGGTAA+AGG | 0.444724 | 5.2:-7190640 | MS.gene09610:CDS |
| GATTTCATGGAGGCTTGGGC+TGG | 0.447837 | 5.2:-7190976 | MS.gene09610:CDS |
| AAGCCCAGATTATGAAGAAT+GGG | 0.454167 | 5.2:-7190941 | MS.gene09610:CDS |
| ATTCTACGATGATCCTGAAA+TGG | 0.454311 | 5.2:-7191487 | MS.gene09610:CDS |
| GGTGGATCAAAGCGCAGATC+GGG | 0.455974 | 5.2:+7191519 | None:intergenic |
| TTTCTCGATCGCGATCAGAT+AGG | 0.459063 | 5.2:+7190852 | None:intergenic |
| CCTGTAAAATGTGTAACAAA+TGG | 0.462913 | 5.2:+7190604 | None:intergenic |
| CGGTCCAGCTCCGTTTCTCA+TGG | 0.469309 | 5.2:+7191046 | None:intergenic |
| AACAGGGTACTTAGCCCAAT+AGG | 0.475860 | 5.2:+7191215 | None:intergenic |
| CATCATCCGTCTTTCTCTGC+AGG | 0.478033 | 5.2:-7191405 | MS.gene09610:CDS |
| TCTCCGTGCAAGAATCCAAT+AGG | 0.480437 | 5.2:-7191342 | MS.gene09610:CDS |
| GCCTGTCTGATCGTCTGACT+CGG | 0.492017 | 5.2:+7190879 | None:intergenic |
| GAAAGAGTGTTGATGGTCAC+TGG | 0.495025 | 5.2:-7191375 | MS.gene09610:CDS |
| TCATTATACTTCCCACTACA+AGG | 0.496339 | 5.2:+7190574 | None:intergenic |
| GCATGACGCCTTCTTAACTT+AGG | 0.496571 | 5.2:+7190709 | None:intergenic |
| CTCACTTGATCCATGAGAAA+CGG | 0.497365 | 5.2:-7191056 | MS.gene09610:CDS |
| AAAGCCCAGATTATGAAGAA+TGG | 0.499353 | 5.2:-7190942 | MS.gene09610:CDS |
| ATTTGTCTTTAAAAGTTGAC+CGG | 0.502606 | 5.2:+7190908 | None:intergenic |
| AAGAATGGGGTAAGACTCTC+CGG | 0.506398 | 5.2:-7190927 | MS.gene09610:CDS |
| ATTGGATTCTTGCACGGAGA+AGG | 0.509563 | 5.2:+7191345 | None:intergenic |
| GCTTCCTCTCAAACGTTACA+AGG | 0.512911 | 5.2:-7191106 | MS.gene09610:CDS |
| TCGTAGAATGTTTGGTCTGG+TGG | 0.513684 | 5.2:+7191501 | None:intergenic |
| AGATGCATTGTTCACCGACA+TGG | 0.516301 | 5.2:-7191136 | MS.gene09610:CDS |
| GCTGACAAGATTTATCTAGA+AGG | 0.520122 | 5.2:-7190820 | MS.gene09610:CDS |
| CCCGAGTCAGACGATCAGAC+AGG | 0.525329 | 5.2:-7190880 | MS.gene09610:CDS |
| TCATCGTAGAATGTTTGGTC+TGG | 0.529616 | 5.2:+7191498 | None:intergenic |
| TGACCACCAAAATAGACGAC+TGG | 0.534163 | 5.2:-7191455 | MS.gene09610:CDS |
| GTCTTTCTCTGCAGGAGCAA+AGG | 0.536163 | 5.2:-7191397 | MS.gene09610:CDS |
| AAAATGCTCCTCCAAGGAAG+AGG | 0.536323 | 5.2:+7191646 | None:intergenic |
| GTTTGGGATGGGGTTTGTGA+AGG | 0.539018 | 5.2:+7191593 | None:intergenic |
| GAGAAAGTGAGTGAAGCTTA+TGG | 0.543266 | 5.2:-7190685 | MS.gene09610:CDS |
| TCTTGATCAGGAACTGTCAA+TGG | 0.548000 | 5.2:-7191005 | MS.gene09610:CDS |
| ATGAGAAACGGAGCTGGACC+GGG | 0.551182 | 5.2:-7191044 | MS.gene09610:CDS |
| TTTGCTCCTGCAGAGAAAGA+CGG | 0.551182 | 5.2:+7191399 | None:intergenic |
| TGTTGTGAAAGCTGCAATGA+TGG | 0.556012 | 5.2:-7191196 | MS.gene09610:CDS |
| TGGTGGATCAAAGCGCAGAT+CGG | 0.556690 | 5.2:+7191518 | None:intergenic |
| ACAGGTTGTCAACCTTGTAG+TGG | 0.558357 | 5.2:-7190586 | MS.gene09610:CDS |
| TGATCCATGAGAAACGGAGC+TGG | 0.564919 | 5.2:-7191050 | MS.gene09610:CDS |
| AAGTTGAGCCTAAGTTAAGA+AGG | 0.567104 | 5.2:-7190717 | MS.gene09610:CDS |
| CCTGTCTGATCGTCTGACTC+GGG | 0.569637 | 5.2:+7190880 | None:intergenic |
| CAGGTTGTCAACCTTGTAGT+GGG | 0.588604 | 5.2:-7190585 | MS.gene09610:CDS |
| GAGCTGAAAATGCTCCTCCA+AGG | 0.589197 | 5.2:+7191640 | None:intergenic |
| GAAGGCGAATATTACTTCGA+GGG | 0.591672 | 5.2:-7190802 | MS.gene09610:CDS |
| AGCTGGACCGGGTTAAACGC+TGG | 0.598150 | 5.2:-7191033 | MS.gene09610:CDS |
| AGAAGGCGAATATTACTTCG+AGG | 0.599202 | 5.2:-7190803 | MS.gene09610:CDS |
| TGATCCTTGTAACGTTTGAG+AGG | 0.599914 | 5.2:+7191102 | None:intergenic |
| TCACCTATTGGATTCTTGCA+CGG | 0.608907 | 5.2:+7191339 | None:intergenic |
| GACCACCAAAATAGACGACT+GGG | 0.610284 | 5.2:-7191454 | MS.gene09610:CDS |
| CAGAAGCAGAGTGGATCTGG+TGG | 0.624600 | 5.2:-7191167 | MS.gene09610:CDS |
| TCATTGCAGCTTTCACAACA+GGG | 0.636937 | 5.2:+7191199 | None:intergenic |
| CGTTTCTCATGGATCAAGTG+AGG | 0.643998 | 5.2:+7191057 | None:intergenic |
| GAACACACCAGCGTTTAACC+CGG | 0.646255 | 5.2:+7191026 | None:intergenic |
| AAGGCGAATATTACTTCGAG+GGG | 0.647787 | 5.2:-7190801 | MS.gene09610:CDS |
| AGGAAGCTTGAAATCCATGT+CGG | 0.666037 | 5.2:+7191122 | None:intergenic |
| GGGATGAAAAGCGTGAGGAG+TGG | 0.666595 | 5.2:-7191434 | MS.gene09610:CDS |
| AGAAGCAGAGTGGATCTGGT+GGG | 0.667841 | 5.2:-7191166 | MS.gene09610:CDS |
| AGCCCAGATTATGAAGAATG+GGG | 0.678392 | 5.2:-7190940 | MS.gene09610:CDS |
| CGACTGGGATGAAAAGCGTG+AGG | 0.682004 | 5.2:-7191439 | MS.gene09610:CDS |
| GAGGCCAGCCATGAACAACA+AGG | 0.700083 | 5.2:+7191076 | None:intergenic |
| TGGCACACCCAGAAGCAGAG+TGG | 0.701722 | 5.2:-7191176 | MS.gene09610:CDS |
| ATGGTCATTAGATTTCATGG+AGG | 0.731958 | 5.2:-7190986 | MS.gene09610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTAATCATATTTTAATA+GGG | - | chr5.2:7191547-7191566 | MS.gene09610:CDS | 10.0% |
| !!! | TCTTTTAATCATATTTTAAT+AGG | - | chr5.2:7191546-7191565 | MS.gene09610:CDS | 10.0% |
| !!! | TTTTAATCATATTTTAATAG+GGG | - | chr5.2:7191548-7191567 | MS.gene09610:CDS | 10.0% |
| !!! | GCTTTTGTATAATATTTTAA+GGG | - | chr5.2:7191664-7191683 | MS.gene09610:CDS | 15.0% |
| !!! | TGCTTTTGTATAATATTTTA+AGG | - | chr5.2:7191663-7191682 | MS.gene09610:CDS | 15.0% |
| !! | AAGATTCTTCAAAAATAAAG+TGG | - | chr5.2:7190595-7190614 | MS.gene09610:CDS | 20.0% |
| !! | AATCAAGTTATTCGTAAATT+TGG | - | chr5.2:7191406-7191425 | MS.gene09610:CDS | 20.0% |
| !! | ATTAAAAGATTATACCTGAA+GGG | + | chr5.2:7191535-7191554 | None:intergenic | 20.0% |
| !!! | ATATTTTAAGGGATCTTTTT+TGG | - | chr5.2:7191675-7191694 | MS.gene09610:CDS | 20.0% |
| ! | GATTAAAAGATTATACCTGA+AGG | + | chr5.2:7191536-7191555 | None:intergenic | 25.0% |
| ! | TGAAGAATCTTAACAACAAA+TGG | + | chr5.2:7190586-7190605 | None:intergenic | 25.0% |
| !! | ATAGAAGAAGATTTGTTTCT+GGG | + | chr5.2:7190215-7190234 | None:intergenic | 25.0% |
| !! | ATTTGTCTTTAAAAGTTGAC+CGG | + | chr5.2:7190994-7191013 | None:intergenic | 25.0% |
| !! | TATAGAAGAAGATTTGTTTC+TGG | + | chr5.2:7190216-7190235 | None:intergenic | 25.0% |
| ATGAAGCATAATCATTCTTG+AGG | + | chr5.2:7191487-7191506 | None:intergenic | 30.0% | |
| CATTCTTGAGGATAATCAAA+AGG | + | chr5.2:7191475-7191494 | None:intergenic | 30.0% | |
| CCTGTAAAATGTGTAACAAA+TGG | + | chr5.2:7191298-7191317 | None:intergenic | 30.0% | |
| TACAGAATCTTACTAGACAT+TGG | + | chr5.2:7191591-7191610 | None:intergenic | 30.0% | |
| TCAATGGTCATTAGATTTCA+TGG | - | chr5.2:7190910-7190929 | MS.gene09610:CDS | 30.0% | |
| TCTAGTAAGATTCTGTATGA+TGG | - | chr5.2:7191594-7191613 | MS.gene09610:CDS | 30.0% | |
| TCTTCTATATTTCTCTCTGA+TGG | - | chr5.2:7190227-7190246 | MS.gene09610:intron | 30.0% | |
| TTTAATAGGGGTCCAATTAT+TGG | - | chr5.2:7191560-7191579 | MS.gene09610:CDS | 30.0% | |
| ! | GTTTTGTGCATAAAGATCTT+GGG | - | chr5.2:7191428-7191447 | MS.gene09610:CDS | 30.0% |
| ! | TATTTGAAAGATGCTGGTTA+TGG | - | chr5.2:7191253-7191272 | MS.gene09610:CDS | 30.0% |
| ! | TTCAGCTCTTTTACTTGTTT+GGG | - | chr5.2:7190274-7190293 | MS.gene09610:intron | 30.0% |
| ! | TTTCAGCTCTTTTACTTGTT+TGG | - | chr5.2:7190273-7190292 | MS.gene09610:intron | 30.0% |
| ! | TTTTGTGCATAAAGATCTTG+GGG | - | chr5.2:7191429-7191448 | MS.gene09610:CDS | 30.0% |
| !! | CCATTTGTTACACATTTTAC+AGG | - | chr5.2:7191295-7191314 | MS.gene09610:CDS | 30.0% |
| !!! | GTTGTTTTTGTGAGGTTTTA+AGG | + | chr5.2:7190342-7190361 | None:intergenic | 30.0% |
| AAAGCCCAGATTATGAAGAA+TGG | - | chr5.2:7190957-7190976 | MS.gene09610:CDS | 35.0% | |
| AACAACAAATGGTCACCTAT+TGG | + | chr5.2:7190575-7190594 | None:intergenic | 35.0% | |
| AAGCCCAGATTATGAAGAAT+GGG | - | chr5.2:7190958-7190977 | MS.gene09610:CDS | 35.0% | |
| AAGTTGAGCCTAAGTTAAGA+AGG | - | chr5.2:7191182-7191201 | MS.gene09610:CDS | 35.0% | |
| ACATTGGTCACACCAATAAT+TGG | + | chr5.2:7191575-7191594 | None:intergenic | 35.0% | |
| ATCCTAAGATGTTTGCCTAT+TGG | - | chr5.2:7190669-7190688 | MS.gene09610:CDS | 35.0% | |
| ATGGTCATTAGATTTCATGG+AGG | - | chr5.2:7190913-7190932 | MS.gene09610:CDS | 35.0% | |
| ATTAGATTTCATGGAGGCTT+GGG | - | chr5.2:7190919-7190938 | MS.gene09610:CDS | 35.0% | |
| ATTCTACGATGATCCTGAAA+TGG | - | chr5.2:7190412-7190431 | MS.gene09610:intron | 35.0% | |
| CATAAAGATCTTGGGGATAA+TGG | - | chr5.2:7191436-7191455 | MS.gene09610:CDS | 35.0% | |
| GCTGACAAGATTTATCTAGA+AGG | - | chr5.2:7191079-7191098 | MS.gene09610:CDS | 35.0% | |
| TACCCCATTCTTCATAATCT+GGG | + | chr5.2:7190964-7190983 | None:intergenic | 35.0% | |
| TCATTATACTTCCCACTACA+AGG | + | chr5.2:7191328-7191347 | None:intergenic | 35.0% | |
| TCCTAAGATGTTTGCCTATT+GGG | - | chr5.2:7190670-7190689 | MS.gene09610:CDS | 35.0% | |
| TTACCCCATTCTTCATAATC+TGG | + | chr5.2:7190965-7190984 | None:intergenic | 35.0% | |
| ! | AAAGATGCTGGTTATGGTAA+AGG | - | chr5.2:7191259-7191278 | MS.gene09610:CDS | 35.0% |
| ! | AATATTACTTCGAGGGGTAT+TGG | - | chr5.2:7191104-7191123 | MS.gene09610:CDS | 35.0% |
| ! | TCAGCTCTTTTACTTGTTTG+GGG | - | chr5.2:7190275-7190294 | MS.gene09610:intron | 35.0% |
| !! | AGAAGATTTGTTTCTGGGAA+TGG | + | chr5.2:7190210-7190229 | None:intergenic | 35.0% |
| !! | ATATTACTTCGAGGGGTATT+GGG | - | chr5.2:7191105-7191124 | MS.gene09610:CDS | 35.0% |
| !! | GAAGAGTATTTGAAAGATGC+TGG | - | chr5.2:7191247-7191266 | MS.gene09610:CDS | 35.0% |
| !! | GAAGATTTGTTTCTGGGAAT+GGG | + | chr5.2:7190209-7190228 | None:intergenic | 35.0% |
| !! | GATCATAACCTTGTTGTTCA+TGG | - | chr5.2:7190815-7190834 | MS.gene09610:CDS | 35.0% |
| !! | GGTTTTGTGCATAAAGATCT+TGG | - | chr5.2:7191427-7191446 | MS.gene09610:CDS | 35.0% |
| !!! | GAAACAACGTTGTTTTTGTG+AGG | + | chr5.2:7190350-7190369 | None:intergenic | 35.0% |
| !!! | GATCTTTTTTGGCGTATTAG+AGG | - | chr5.2:7191686-7191705 | MS.gene09610:CDS | 35.0% |
| !!! | TTTTGTGAGGTTTTAAGGTG+AGG | + | chr5.2:7190337-7190356 | None:intergenic | 35.0% |
| !!! | TTTTTTGGCGTATTAGAGGT+GGG | - | chr5.2:7191690-7191709 | MS.gene09610:CDS | 35.0% |
| AAGGCGAATATTACTTCGAG+GGG | - | chr5.2:7191098-7191117 | MS.gene09610:CDS | 40.0% | |
| AGAAGGCGAATATTACTTCG+AGG | - | chr5.2:7191096-7191115 | MS.gene09610:CDS | 40.0% | |
| AGCCCAGATTATGAAGAATG+GGG | - | chr5.2:7190959-7190978 | MS.gene09610:CDS | 40.0% | |
| AGGAAGCTTGAAATCCATGT+CGG | + | chr5.2:7190780-7190799 | None:intergenic | 40.0% | |
| ATCATTGCAGCTTTCACAAC+AGG | + | chr5.2:7190704-7190723 | None:intergenic | 40.0% | |
| CAGGATCATCGTAGAATGTT+TGG | + | chr5.2:7190409-7190428 | None:intergenic | 40.0% | |
| CATTAGATTTCATGGAGGCT+TGG | - | chr5.2:7190918-7190937 | MS.gene09610:CDS | 40.0% | |
| CGCGATCGAGAAAGAAAAAT+GGG | - | chr5.2:7191057-7191076 | MS.gene09610:CDS | 40.0% | |
| CTCACTTGATCCATGAGAAA+CGG | - | chr5.2:7190843-7190862 | MS.gene09610:CDS | 40.0% | |
| CTGGTTATGGTAAAGGAAGT+TGG | - | chr5.2:7191266-7191285 | MS.gene09610:CDS | 40.0% | |
| GAAGGCGAATATTACTTCGA+GGG | - | chr5.2:7191097-7191116 | MS.gene09610:CDS | 40.0% | |
| GAGAAAGTGAGTGAAGCTTA+TGG | - | chr5.2:7191214-7191233 | MS.gene09610:CDS | 40.0% | |
| GTCATGGTATACTCCATTTC+AGG | + | chr5.2:7190428-7190447 | None:intergenic | 40.0% | |
| TCACCTATTGGATTCTTGCA+CGG | + | chr5.2:7190563-7190582 | None:intergenic | 40.0% | |
| TCATCGTAGAATGTTTGGTC+TGG | + | chr5.2:7190404-7190423 | None:intergenic | 40.0% | |
| TCATTGCAGCTTTCACAACA+GGG | + | chr5.2:7190703-7190722 | None:intergenic | 40.0% | |
| TCGCGATCGAGAAAGAAAAA+TGG | - | chr5.2:7191056-7191075 | MS.gene09610:CDS | 40.0% | |
| TCTTCATAATCTGGGCTTTG+TGG | + | chr5.2:7190956-7190975 | None:intergenic | 40.0% | |
| TCTTGATCAGGAACTGTCAA+TGG | - | chr5.2:7190894-7190913 | MS.gene09610:CDS | 40.0% | |
| TGATATGATCATGACCCTTC+AGG | - | chr5.2:7191518-7191537 | MS.gene09610:CDS | 40.0% | |
| TGATCCTTGTAACGTTTGAG+AGG | + | chr5.2:7190800-7190819 | None:intergenic | 40.0% | |
| TGTTGTGAAAGCTGCAATGA+TGG | - | chr5.2:7190703-7190722 | MS.gene09610:CDS | 40.0% | |
| ! | CTTCATAATCTGGGCTTTGT+GGG | + | chr5.2:7190955-7190974 | None:intergenic | 40.0% |
| ! | GTGGATTACTCTCGTATTCA+TGG | - | chr5.2:7190614-7190633 | MS.gene09610:CDS | 40.0% |
| ! | TTAAGGTGAGGTTGTCGTTT+GGG | + | chr5.2:7190325-7190344 | None:intergenic | 40.0% |
| ! | TTCATCCCAGTCGTCTATTT+TGG | + | chr5.2:7190453-7190472 | None:intergenic | 40.0% |
| ! | TTTAAGGTGAGGTTGTCGTT+TGG | + | chr5.2:7190326-7190345 | None:intergenic | 40.0% |
| !! | AGCAAAGGAAAGAGTGTTGA+TGG | - | chr5.2:7190517-7190536 | MS.gene09610:intron | 40.0% |
| !! | ATAACCTTGTTGTTCATGGC+TGG | - | chr5.2:7190819-7190838 | MS.gene09610:CDS | 40.0% |
| !! | TTTTTGGCGTATTAGAGGTG+GGG | - | chr5.2:7191691-7191710 | MS.gene09610:CDS | 40.0% |
| !!! | CTTTTTTGGCGTATTAGAGG+TGG | - | chr5.2:7191689-7191708 | MS.gene09610:CDS | 40.0% |
| AAAATGCTCCTCCAAGGAAG+AGG | + | chr5.2:7190256-7190275 | None:intergenic | 45.0% | |
| AAGAATGGGGTAAGACTCTC+CGG | - | chr5.2:7190972-7190991 | MS.gene09610:CDS | 45.0% | |
| ACAGGTTGTCAACCTTGTAG+TGG | - | chr5.2:7191313-7191332 | MS.gene09610:CDS | 45.0% | |
| AGATGCATTGTTCACCGACA+TGG | - | chr5.2:7190763-7190782 | MS.gene09610:CDS | 45.0% | |
| ATTGGATTCTTGCACGGAGA+AGG | + | chr5.2:7190557-7190576 | None:intergenic | 45.0% | |
| CAGGTTGTCAACCTTGTAGT+GGG | - | chr5.2:7191314-7191333 | MS.gene09610:CDS | 45.0% | |
| CGTTTCTCATGGATCAAGTG+AGG | + | chr5.2:7190845-7190864 | None:intergenic | 45.0% | |
| GACCACCAAAATAGACGACT+GGG | - | chr5.2:7190445-7190464 | MS.gene09610:intron | 45.0% | |
| GCATGACGCCTTCTTAACTT+AGG | + | chr5.2:7191193-7191212 | None:intergenic | 45.0% | |
| GCCCAATAGGCAAACATCTT+AGG | + | chr5.2:7190674-7190693 | None:intergenic | 45.0% | |
| GCTTCCTCTCAAACGTTACA+AGG | - | chr5.2:7190793-7190812 | MS.gene09610:CDS | 45.0% | |
| TCGTAGAATGTTTGGTCTGG+TGG | + | chr5.2:7190401-7190420 | None:intergenic | 45.0% | |
| TCTCCGTGCAAGAATCCAAT+AGG | - | chr5.2:7190557-7190576 | MS.gene09610:intron | 45.0% | |
| TGACCACCAAAATAGACGAC+TGG | - | chr5.2:7190444-7190463 | MS.gene09610:intron | 45.0% | |
| TGTACACTGCTGATGCTTGT+TGG | - | chr5.2:7191350-7191369 | MS.gene09610:CDS | 45.0% | |
| TTTCTCGATCGCGATCAGAT+AGG | + | chr5.2:7191050-7191069 | None:intergenic | 45.0% | |
| TTTGCTCCTGCAGAGAAAGA+CGG | + | chr5.2:7190503-7190522 | None:intergenic | 45.0% | |
| ! | AACAGGGTACTTAGCCCAAT+AGG | + | chr5.2:7190687-7190706 | None:intergenic | 45.0% |
| ! | ACTGCTGATGCTTGTTGGAA+TGG | - | chr5.2:7191355-7191374 | MS.gene09610:CDS | 45.0% |
| ! | CTGCTGATGCTTGTTGGAAT+GGG | - | chr5.2:7191356-7191375 | MS.gene09610:CDS | 45.0% |
| !! | ATCCCAGTCGTCTATTTTGG+TGG | + | chr5.2:7190450-7190469 | None:intergenic | 45.0% |
| !! | GAAAGAGTGTTGATGGTCAC+TGG | - | chr5.2:7190524-7190543 | MS.gene09610:intron | 45.0% |
| !!! | GTCGTCTATTTTGGTGGTCA+TGG | + | chr5.2:7190444-7190463 | None:intergenic | 45.0% |
| ACCAGATCCACTCTGCTTCT+GGG | + | chr5.2:7190733-7190752 | None:intergenic | 50.0% | |
| ACGCTGGTGTGTTCTTGATC+AGG | - | chr5.2:7190882-7190901 | MS.gene09610:CDS | 50.0% | |
| AGAAGCAGAGTGGATCTGGT+GGG | - | chr5.2:7190733-7190752 | MS.gene09610:CDS | 50.0% | |
| CATCATCCGTCTTTCTCTGC+AGG | - | chr5.2:7190494-7190513 | MS.gene09610:intron | 50.0% | |
| GAACACACCAGCGTTTAACC+CGG | + | chr5.2:7190876-7190895 | None:intergenic | 50.0% | |
| GAGCTGAAAATGCTCCTCCA+AGG | + | chr5.2:7190262-7190281 | None:intergenic | 50.0% | |
| GTCTTTCTCTGCAGGAGCAA+AGG | - | chr5.2:7190502-7190521 | MS.gene09610:intron | 50.0% | |
| TCTGATGGCTTCCTCTTCCT+TGG | - | chr5.2:7190242-7190261 | MS.gene09610:intron | 50.0% | |
| TGATCCATGAGAAACGGAGC+TGG | - | chr5.2:7190849-7190868 | MS.gene09610:CDS | 50.0% | |
| ! | GCGTATTAGAGGTGGGGTTT+TGG | - | chr5.2:7191697-7191716 | MS.gene09610:CDS | 50.0% |
| ! | GTGAGGTTGTCGTTTGGGAT+GGG | + | chr5.2:7190320-7190339 | None:intergenic | 50.0% |
| ! | GTTTGGGATGGGGTTTGTGA+AGG | + | chr5.2:7190309-7190328 | None:intergenic | 50.0% |
| ! | TGAGGTTGTCGTTTGGGATG+GGG | + | chr5.2:7190319-7190338 | None:intergenic | 50.0% |
| ! | TGGTGGATCAAAGCGCAGAT+CGG | + | chr5.2:7190384-7190403 | None:intergenic | 50.0% |
| ACCCAGAAGCAGAGTGGATC+TGG | - | chr5.2:7190729-7190748 | MS.gene09610:CDS | 55.0% | |
| ATGAGAAACGGAGCTGGACC+GGG | - | chr5.2:7190855-7190874 | MS.gene09610:CDS | 55.0% | |
| CACCAGATCCACTCTGCTTC+TGG | + | chr5.2:7190734-7190753 | None:intergenic | 55.0% | |
| CAGAAGCAGAGTGGATCTGG+TGG | - | chr5.2:7190732-7190751 | MS.gene09610:CDS | 55.0% | |
| CATGAGAAACGGAGCTGGAC+CGG | - | chr5.2:7190854-7190873 | MS.gene09610:CDS | 55.0% | |
| CCTGTCTGATCGTCTGACTC+GGG | + | chr5.2:7191022-7191041 | None:intergenic | 55.0% | |
| GAGGCCAGCCATGAACAACA+AGG | + | chr5.2:7190826-7190845 | None:intergenic | 55.0% | |
| GATGGCTTCCTCTTCCTTGG+AGG | - | chr5.2:7190245-7190264 | MS.gene09610:intron | 55.0% | |
| GATTTCATGGAGGCTTGGGC+TGG | - | chr5.2:7190923-7190942 | MS.gene09610:CDS | 55.0% | |
| GCCTGTCTGATCGTCTGACT+CGG | + | chr5.2:7191023-7191042 | None:intergenic | 55.0% | |
| GGTGGATCAAAGCGCAGATC+GGG | + | chr5.2:7190383-7190402 | None:intergenic | 55.0% | |
| ! | ATGGAGGCTTGGGCTGGAAT+GGG | - | chr5.2:7190929-7190948 | MS.gene09610:CDS | 55.0% |
| ! | CGACTGGGATGAAAAGCGTG+AGG | - | chr5.2:7190460-7190479 | MS.gene09610:intron | 55.0% |
| ! | GGGATGAAAAGCGTGAGGAG+TGG | - | chr5.2:7190465-7190484 | MS.gene09610:intron | 55.0% |
| ! | GGTGAGGTTGTCGTTTGGGA+TGG | + | chr5.2:7190321-7190340 | None:intergenic | 55.0% |
| AGCTGGACCGGGTTAAACGC+TGG | - | chr5.2:7190866-7190885 | MS.gene09610:CDS | 60.0% | |
| CCCGAGTCAGACGATCAGAC+AGG | - | chr5.2:7191019-7191038 | MS.gene09610:CDS | 60.0% | |
| CGGTCCAGCTCCGTTTCTCA+TGG | + | chr5.2:7190856-7190875 | None:intergenic | 60.0% | |
| TGGCACACCCAGAAGCAGAG+TGG | - | chr5.2:7190723-7190742 | MS.gene09610:CDS | 60.0% | |
| ! | CATGGAGGCTTGGGCTGGAA+TGG | - | chr5.2:7190928-7190947 | MS.gene09610:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 7190197 | 7191724 | 7190197 | ID=MS.gene09610 |
| chr5.2 | mRNA | 7190197 | 7191724 | 7190197 | ID=MS.gene09610.t1;Parent=MS.gene09610 |
| chr5.2 | exon | 7190571 | 7191724 | 7190571 | ID=MS.gene09610.t1.exon1;Parent=MS.gene09610.t1 |
| chr5.2 | CDS | 7190571 | 7191724 | 7190571 | ID=cds.MS.gene09610.t1;Parent=MS.gene09610.t1 |
| chr5.2 | exon | 7190197 | 7190236 | 7190197 | ID=MS.gene09610.t1.exon2;Parent=MS.gene09610.t1 |
| chr5.2 | CDS | 7190197 | 7190236 | 7190197 | ID=cds.MS.gene09610.t1;Parent=MS.gene09610.t1 |
| Gene Sequence |
| Protein sequence |
