AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09872

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09872.t1 MTR_7g099570 42.637 584 223 11 1 472 6 589 2.33e-140 417
MS.gene09872.t1 MTR_7g099580 91.282 195 17 0 1 195 9 203 3.33e-124 366
MS.gene09872.t1 MTR_1g069110 43.026 509 187 9 1 483 15 446 1.85e-123 369
MS.gene09872.t1 MTR_7g099600 93.103 87 6 0 376 462 1 87 1.55e-47 159
MS.gene09872.t1 MTR_8g069880 25.991 454 252 12 7 440 10 399 2.86e-37 143
MS.gene09872.t1 MTR_8g062410 26.889 450 252 14 3 438 9 395 1.30e-32 129
MS.gene09872.t1 MTR_8g072510 25.202 496 291 16 7 484 13 446 9.14e-32 127
MS.gene09872.t1 MTR_2g101310 26.872 454 254 13 35 436 137 564 2.25e-31 128
MS.gene09872.t1 MTR_8g039620 26.531 490 276 18 4 475 14 437 2.77e-31 125
MS.gene09872.t1 MTR_8g068990 25.250 400 235 9 7 397 15 359 8.71e-31 124
MS.gene09872.t1 MTR_3g016210 23.690 477 298 13 4 463 10 437 1.86e-30 123
MS.gene09872.t1 MTR_7g099550 55.963 109 43 2 63 171 136 239 2.91e-30 118
MS.gene09872.t1 MTR_7g021090 25.943 424 243 14 2 411 7 373 4.01e-30 122
MS.gene09872.t1 MTR_8g066670 23.431 478 288 15 1 463 1072 1486 4.67e-28 119
MS.gene09872.t1 MTR_7g099560 29.779 272 104 7 206 476 1 186 5.19e-28 112
MS.gene09872.t1 MTR_8g467780 24.330 485 295 11 3 467 10 442 3.10e-27 114
MS.gene09872.t1 MTR_8g073260 26.425 386 225 12 7 381 14 351 5.31e-26 110
MS.gene09872.t1 MTR_2g101310 27.123 365 206 10 35 350 137 490 4.92e-25 108
MS.gene09872.t1 MTR_2g101320 26.419 458 258 13 32 436 134 565 3.63e-23 103
MS.gene09872.t1 MTR_1g059930 27.606 355 190 12 4 343 12 314 1.02e-22 100
MS.gene09872.t1 MTR_1g115575 24.297 498 277 19 4 476 135 557 3.38e-21 97.4
MS.gene09872.t1 MTR_7g100390 28.685 251 159 6 4 253 53 284 3.76e-21 96.7
MS.gene09872.t1 MTR_8g040930 22.525 404 250 9 46 438 1 352 3.26e-20 92.8
MS.gene09872.t1 MTR_8g041240 22.525 404 250 9 46 438 1 352 3.26e-20 92.8
MS.gene09872.t1 MTR_3g105650 26.838 272 181 6 7 270 8 269 4.95e-20 92.8
MS.gene09872.t1 MTR_4g062100 24.431 483 305 20 4 476 74 506 2.66e-19 91.3
MS.gene09872.t1 MTR_7g117620 32.979 188 113 5 39 225 119 294 4.55e-19 90.5
MS.gene09872.t1 MTR_7g451420 29.004 231 148 6 1 223 6 228 7.61e-19 87.8
MS.gene09872.t1 MTR_2g096190 27.731 238 157 7 4 240 70 293 2.41e-18 88.2
MS.gene09872.t1 MTR_2g096190 24.367 316 184 11 37 315 28 325 7.56e-12 68.2
MS.gene09872.t1 MTR_8g019280 31.818 132 87 1 337 465 8 139 6.64e-17 78.2
MS.gene09872.t1 MTR_5g085500 35.714 154 91 5 73 224 8 155 7.10e-17 83.6
MS.gene09872.t1 MTR_1g032100 25.059 423 253 16 4 414 60 430 8.49e-17 83.6
MS.gene09872.t1 MTR_8g019290 28.049 164 107 2 313 465 6 169 9.91e-17 78.6
MS.gene09872.t1 MTR_5g085480 26.165 279 192 6 4 277 54 323 1.69e-16 82.4
MS.gene09872.t1 MTR_5g085480 26.165 279 192 6 4 277 214 483 2.91e-16 82.0
MS.gene09872.t1 MTR_8g019260 28.758 153 108 1 314 465 15 167 9.47e-16 75.9
MS.gene09872.t1 MTR_8g019110 28.758 153 108 1 314 465 15 167 9.47e-16 75.9
MS.gene09872.t1 MTR_7g100430 31.383 188 116 4 39 225 161 336 4.21e-15 78.2
MS.gene09872.t1 MTR_0470s0010 30.822 146 91 4 338 475 41 184 1.77e-13 69.3
MS.gene09872.t1 MTR_8g019020 30.822 146 91 4 338 475 41 184 1.77e-13 69.3
MS.gene09872.t1 MTR_8g105260 26.389 216 144 6 39 253 101 302 4.03e-13 72.0
MS.gene09872.t1 MTR_5g085810 24.020 408 273 12 34 434 299 676 7.15e-12 68.2
MS.gene09872.t1 MTR_2g096760 28.877 187 116 6 47 223 22 201 7.45e-12 67.8
MS.gene09872.t1 MTR_0514s0010 25.926 216 119 7 295 471 14 227 8.73e-12 65.9
MS.gene09872.t1 MTR_7g055630 29.452 146 97 2 338 477 40 185 6.76e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09872.t1 AT5G51160 27.750 400 227 10 53 438 38 389 5.24e-36 139
MS.gene09872.t1 AT4G10720 26.105 475 275 17 11 476 12 419 4.27e-35 136
MS.gene09872.t1 AT5G15500 25.813 492 278 17 2 476 4 425 3.17e-32 129
MS.gene09872.t1 AT4G10720 25.053 475 247 15 11 476 12 386 4.09e-31 124
MS.gene09872.t1 AT1G14500 24.089 494 291 14 3 477 4 432 1.39e-26 112
MS.gene09872.t1 AT1G14480 24.625 467 278 15 4 457 5 410 3.49e-25 108
MS.gene09872.t1 AT5G54620 29.870 231 147 5 2 224 3 226 3.12e-24 105
MS.gene09872.t1 AT5G54610 33.032 221 135 5 10 224 11 224 5.02e-24 104
MS.gene09872.t1 AT5G50140 23.355 471 267 13 35 436 26 471 5.10e-23 102
MS.gene09872.t1 AT5G60070 31.937 191 118 5 39 227 111 291 6.70e-23 102
MS.gene09872.t1 AT2G31820 31.274 259 156 9 4 260 193 431 1.01e-21 99.4
MS.gene09872.t1 AT3G12360 25.439 456 259 15 4 434 121 520 1.25e-18 89.4
MS.gene09872.t1 AT3G12360 25.439 456 259 15 4 434 133 532 1.34e-18 89.4
MS.gene09872.t1 AT1G14480 31.746 189 114 6 4 182 5 188 1.49e-18 88.2
MS.gene09872.t1 AT1G05640 30.942 223 140 7 4 225 157 366 2.02e-18 89.0
MS.gene09872.t1 AT1G10340 22.707 458 256 13 1 437 133 513 9.23e-18 86.7
MS.gene09872.t1 AT5G54710 24.512 461 282 16 7 452 188 597 9.75e-17 83.6
MS.gene09872.t1 AT1G10340 22.542 417 230 11 38 437 169 509 1.01e-16 83.6
MS.gene09872.t1 AT5G54710 26.018 442 264 17 7 437 143 532 1.13e-16 83.2
MS.gene09872.t1 AT1G34050 24.286 420 254 15 25 436 140 503 3.27e-16 81.6
MS.gene09872.t1 AT1G07710 27.727 220 145 5 4 222 70 276 4.62e-16 81.3
MS.gene09872.t1 AT1G07710 27.727 220 145 5 4 222 70 276 4.62e-16 81.3
MS.gene09872.t1 AT2G01680 23.545 378 246 12 39 414 97 433 7.97e-15 77.4
MS.gene09872.t1 AT3G09550 24.384 406 234 15 40 427 182 532 1.55e-14 76.6
MS.gene09872.t1 AT3G09550 24.384 406 234 15 40 427 182 532 1.55e-14 76.6
MS.gene09872.t1 AT3G09550 24.384 406 234 15 40 427 189 539 1.70e-14 76.6
MS.gene09872.t1 AT3G13950 33.099 142 89 3 335 472 52 191 7.34e-14 70.9
MS.gene09872.t1 AT4G03480 26.638 229 155 6 4 225 316 538 3.58e-13 72.4
MS.gene09872.t1 AT4G03480 26.638 229 155 6 4 225 319 541 3.62e-13 72.4
MS.gene09872.t1 AT5G02620 24.036 441 277 17 4 427 60 459 2.48e-12 69.7
MS.gene09872.t1 AT5G02620 24.036 441 277 17 4 427 60 459 2.48e-12 69.7
MS.gene09872.t1 AT5G02620 24.036 441 277 17 4 427 60 459 2.48e-12 69.7
MS.gene09872.t1 AT4G13266 29.655 145 91 5 335 472 54 194 8.87e-12 65.1
MS.gene09872.t1 AT4G03500 27.711 166 110 5 63 225 248 406 2.14e-11 66.6
MS.gene09872.t1 AT4G03500 27.711 166 110 5 63 225 248 406 2.14e-11 66.6
MS.gene09872.t1 AT4G03500 27.711 166 110 5 63 225 271 429 2.19e-11 66.6
MS.gene09872.t1 AT4G03460 24.468 188 133 4 69 254 232 412 5.75e-11 65.5
MS.gene09872.t1 AT4G03460 24.468 188 133 4 69 254 264 444 7.40e-11 65.1

Find 87 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTAATGATTTCGGTTTC+TGG 0.183664 7.3:+12906657 None:intergenic
GTTCACTTCAGCTGCTAAAT+TGG 0.191406 7.3:+12906860 None:intergenic
TCCAACTACCTTGGTTTATT+AGG 0.226783 7.3:+12905405 None:intergenic
TGGATTTCCACTTGGGAATA+AGG 0.247146 7.3:-12905124 MS.gene09872:CDS
CTCTACAATGCATCATTAAA+TGG 0.285327 7.3:-12907029 MS.gene09872:CDS
AAATTACAAGAGTGGTGTTT+TGG 0.298168 7.3:-12904927 MS.gene09872:CDS
AAACATCACCTTAATGATTT+CGG 0.302136 7.3:+12906650 None:intergenic
TCTTTGGATCAATGTTCTTA+AGG 0.306596 7.3:+12906995 None:intergenic
AGGACGTGTGGAAGCAATTA+AGG 0.310242 7.3:-12906697 MS.gene09872:CDS
TGTGTTGACTGTGAATTCTT+TGG 0.332031 7.3:+12905500 None:intergenic
TCTTTCTTACTTCTAGTTGT+TGG 0.336507 7.3:-12904958 MS.gene09872:CDS
TCGCAAACTGGGATACGTTT+TGG 0.338912 7.3:-12904992 MS.gene09872:CDS
TCAAAATGAGAGGGTCTCTT+TGG 0.353711 7.3:+12906979 None:intergenic
TGCTTCTCTGTGTGTGGTGT+TGG 0.358882 7.3:-12905157 MS.gene09872:CDS
GCCAGAAACCGAAATCATTA+AGG 0.359546 7.3:-12906658 MS.gene09872:CDS
AGGACGTTGCCCTCTTCATT+TGG 0.363159 7.3:-12906832 MS.gene09872:CDS
ATTCTATAATAAACATGATT+AGG 0.365920 7.3:+12905015 None:intergenic
CTTCATTTGGCTTCTGCAAA+AGG 0.368217 7.3:-12906819 MS.gene09872:CDS
CTGCAGTTGTGGGTTATGTT+TGG 0.382850 7.3:-12905227 MS.gene09872:CDS
GCAGCTGAAGTGAACTTAGA+AGG 0.388437 7.3:-12906852 MS.gene09872:CDS
TGTCAGACGTGCACAAATAA+AGG 0.392121 7.3:-12906475 MS.gene09872:intron
AATATAAATTTCATAAAATC+TGG 0.393458 7.3:+12905201 None:intergenic
TTCACTTCAGCTGCTAAATT+GGG 0.395520 7.3:+12906861 None:intergenic
CTCACATACATGTGGGCACT+TGG 0.410282 7.3:-12905048 MS.gene09872:CDS
TAAGTCCACCAGGCGGTGTT+TGG 0.416121 7.3:-12905311 MS.gene09872:CDS
TTATTATAGAATTCGCAAAC+TGG 0.421423 7.3:-12905004 MS.gene09872:CDS
CTCATCAGTGGATTTCCACT+TGG 0.422915 7.3:-12905132 MS.gene09872:CDS
CAACATGGGTTTAACACCAT+TGG 0.448028 7.3:-12905753 MS.gene09872:CDS
TTGCACATAGCCTCTTTGCT+TGG 0.454986 7.3:-12906921 MS.gene09872:CDS
TTTAACACCATTGGATATGC+TGG 0.458284 7.3:-12905744 MS.gene09872:CDS
TGAAGCAGGCACTGCAGTTG+TGG 0.460591 7.3:-12905238 MS.gene09872:CDS
AATTAGCTATTCAACTGATC+AGG 0.473868 7.3:+12904853 None:intergenic
AGCTAAAGAAGGAGCTCAAA+GGG 0.484282 7.3:-12905669 MS.gene09872:CDS
TTCATTTGGCTTCTGCAAAA+GGG 0.485852 7.3:-12906818 MS.gene09872:CDS
ACTTATGATTTCTGTGAAGC+AGG 0.486383 7.3:-12905252 MS.gene09872:CDS
TTCTTTGGTGATGTTTGTGT+TGG 0.490831 7.3:+12905515 None:intergenic
GTTGGTAGCGGCTGTGGTTG+TGG 0.493449 7.3:+12905533 None:intergenic
TCTTCTTGCCAAACACCGCC+TGG 0.495421 7.3:+12905303 None:intergenic
GTTTGTGTTGGTAGCGGCTG+TGG 0.503359 7.3:+12905527 None:intergenic
TGCAATGGTGTTTCAGAGAA+GGG 0.506363 7.3:+12906939 None:intergenic
ACTTGGGAATAAGGCCATGA+TGG 0.509567 7.3:-12905115 MS.gene09872:CDS
CTTGGGAATAAGGCCATGAT+GGG 0.510342 7.3:-12905114 MS.gene09872:CDS
GATCATATGTTAGCTAAAGA+AGG 0.518709 7.3:-12905680 MS.gene09872:CDS
GCGAACACACAAGTGTAGAA+TGG 0.520677 7.3:+12906608 None:intergenic
TCATCAGTGGATTTCCACTT+GGG 0.523634 7.3:-12905131 MS.gene09872:CDS
ACTTCAGTTGACGAGGAAGC+TGG 0.530077 7.3:+12905620 None:intergenic
TTTCTTTGCTTCTCTGTGTG+TGG 0.530696 7.3:-12905163 MS.gene09872:CDS
TATTATAGAATTCGCAAACT+GGG 0.531747 7.3:-12905003 MS.gene09872:CDS
ATAAATAATTTGAACAACAT+GGG 0.535600 7.3:-12905767 MS.gene09872:CDS
TATAAATAATTTGAACAACA+TGG 0.539764 7.3:-12905768 MS.gene09872:CDS
AACTGCTAAAATCCCCATCA+TGG 0.551879 7.3:+12905101 None:intergenic
ATACATGTGGGCACTTGGAT+TGG 0.556164 7.3:-12905043 MS.gene09872:CDS
GTGGTGTTGGTTCTCATCAG+TGG 0.560935 7.3:-12905144 MS.gene09872:CDS
GTGCAATGGTGTTTCAGAGA+AGG 0.565252 7.3:+12906938 None:intergenic
GAAGCAGGCACTGCAGTTGT+GGG 0.565583 7.3:-12905237 MS.gene09872:CDS
AATCATAAGTAGTGCATGCA+TGG 0.567093 7.3:+12905265 None:intergenic
TTTGATTCAAATTACAAGAG+TGG 0.567229 7.3:-12904935 MS.gene09872:CDS
TTGCAGAAGCCAAATGAAGA+GGG 0.567237 7.3:+12906823 None:intergenic
GGTGATGTTTGTGTTGGTAG+CGG 0.571095 7.3:+12905521 None:intergenic
TTATCTGTCAAAGACAAAGA+AGG 0.573220 7.3:-12906519 MS.gene09872:CDS
AACAACACAGACGCAACAGA+TGG 0.576839 7.3:-12905457 MS.gene09872:CDS
GTCCTCTCATTGCAGCAAAG+TGG 0.579978 7.3:+12906715 None:intergenic
TAGCTAAAGAAGGAGCTCAA+AGG 0.590879 7.3:-12905670 MS.gene09872:CDS
CTCGAAGTTTCCAAGCAAAG+AGG 0.591899 7.3:+12906911 None:intergenic
ATCCACTTTGCTGCAATGAG+AGG 0.593694 7.3:-12906717 MS.gene09872:CDS
TTCCTCTCACTAGCTGCACG+AGG 0.594845 7.3:+12906559 None:intergenic
AGCAAAGAGGCTATGTGCAA+TGG 0.598670 7.3:+12906924 None:intergenic
CTCATTGCAGCAAAGTGGAT+AGG 0.598957 7.3:+12906720 None:intergenic
ATGTTTGAGACTGATCATCA+TGG 0.605579 7.3:-12906633 MS.gene09872:CDS
TCATGTTGCTCACATACATG+TGG 0.606238 7.3:-12905056 MS.gene09872:CDS
TTTGCAGAAGCCAAATGAAG+AGG 0.607614 7.3:+12906822 None:intergenic
CAATCAGTAATAAGTCCACC+AGG 0.611099 7.3:-12905321 MS.gene09872:intron
GAAACTTTGCTCAAAATGAG+AGG 0.611802 7.3:+12906969 None:intergenic
AAACTTTGCTCAAAATGAGA+GGG 0.617414 7.3:+12906970 None:intergenic
ATCCTCGTGCAGCTAGTGAG+AGG 0.624423 7.3:-12906561 MS.gene09872:CDS
TCTTGCCAAACACCGCCTGG+TGG 0.629516 7.3:+12905306 None:intergenic
CATGTTGCTCACATACATGT+GGG 0.656114 7.3:-12905055 MS.gene09872:CDS
TGTTCGCTATAACCATCTAG+AGG 0.665347 7.3:-12906592 MS.gene09872:CDS
TATGTTAACTTCAGTTGACG+AGG 0.670555 7.3:+12905613 None:intergenic
ATCATGGCCTTATTCCCAAG+TGG 0.672138 7.3:+12905117 None:intergenic
AACTAGAAGTAAGAAAGACC+AGG 0.672399 7.3:+12904963 None:intergenic
TGCTGCAATGAGAGGACGTG+TGG 0.676824 7.3:-12906709 MS.gene09872:CDS
TTGGGAATAAGGCCATGATG+GGG 0.695312 7.3:-12905113 MS.gene09872:CDS
CTGTGATCCAGCATATCCAA+TGG 0.704887 7.3:+12905737 None:intergenic
ACGACATACCTAATAAACCA+AGG 0.719709 7.3:-12905413 MS.gene09872:intron
TGGCAAGAAGATACAAAACA+CGG 0.732277 7.3:-12905291 MS.gene09872:CDS
TCAGTAATAAGTCCACCAGG+CGG 0.773828 7.3:-12905318 MS.gene09872:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAAATTTCATAAAATC+TGG + chr7.3:12906695-12906714 None:intergenic 10.0%
!! GTGATTTAATATAAATAATT+TGG + chr7.3:12905501-12905520 None:intergenic 10.0%
!! ATAAATAATTTGAACAACAT+GGG - chr7.3:12906126-12906145 MS.gene09872:intron 15.0%
!! ATTCTATAATAAACATGATT+AGG + chr7.3:12906881-12906900 None:intergenic 15.0%
!! TATAAATAATTTGAACAACA+TGG - chr7.3:12906125-12906144 MS.gene09872:intron 15.0%
!!! CTATTTTAATCTATAACAAA+CGG - chr7.3:12905523-12905542 MS.gene09872:CDS 15.0%
!!! TTCAAGTTATTTTAGAAAAA+TGG + chr7.3:12905453-12905472 None:intergenic 15.0%
!!! TTTGTTATAGATTAAAATAG+AGG + chr7.3:12905523-12905542 None:intergenic 15.0%
!! ATATAAACCATTACTGTTAT+TGG - chr7.3:12905711-12905730 MS.gene09872:CDS 20.0%
!! CTTTATAGACTTGAAATTTA+AGG - chr7.3:12905812-12905831 MS.gene09872:CDS 20.0%
!! TATAAACCATTACTGTTATT+GGG - chr7.3:12905712-12905731 MS.gene09872:CDS 20.0%
!! TCAACATAAAACAATAGAAA+AGG - chr7.3:12906035-12906054 MS.gene09872:intron 20.0%
!! TGGTTTATATACAAGAATTA+AGG + chr7.3:12905701-12905720 None:intergenic 20.0%
! AAACATCACCTTAATGATTT+CGG + chr7.3:12905246-12905265 None:intergenic 25.0%
! AAAGACAAAAGAACAATTCA+TGG - chr7.3:12906518-12906537 MS.gene09872:CDS 25.0%
! ATGAACATGTAAGTTTCATA+CGG + chr7.3:12906016-12906035 None:intergenic 25.0%
! TATTATAGAATTCGCAAACT+GGG - chr7.3:12906890-12906909 MS.gene09872:CDS 25.0%
! TTATTATAGAATTCGCAAAC+TGG - chr7.3:12906889-12906908 MS.gene09872:CDS 25.0%
! TTTGATTCAAATTACAAGAG+TGG - chr7.3:12906958-12906977 MS.gene09872:CDS 25.0%
!! TATGAATGTGTTCTTTTAGA+CGG + chr7.3:12905905-12905924 None:intergenic 25.0%
!! TATTTTGTGACATTGTCATT+TGG + chr7.3:12906308-12906327 None:intergenic 25.0%
AAACTTTGCTCAAAATGAGA+GGG + chr7.3:12904926-12904945 None:intergenic 30.0%
CAATCAATACTCTTCACATT+GGG + chr7.3:12905768-12905787 None:intergenic 30.0%
CTCTACAATGCATCATTAAA+TGG - chr7.3:12904864-12904883 MS.gene09872:CDS 30.0%
GATCATATGTTAGCTAAAGA+AGG - chr7.3:12906213-12906232 MS.gene09872:intron 30.0%
TCAATCAATACTCTTCACAT+TGG + chr7.3:12905769-12905788 None:intergenic 30.0%
TCTTTGGATCAATGTTCTTA+AGG + chr7.3:12904901-12904920 None:intergenic 30.0%
TGAACATGTAAGTTTCATAC+GGG + chr7.3:12906015-12906034 None:intergenic 30.0%
TTATCTGTCAAAGACAAAGA+AGG - chr7.3:12905374-12905393 MS.gene09872:intron 30.0%
! AAATTACAAGAGTGGTGTTT+TGG - chr7.3:12906966-12906985 MS.gene09872:CDS 30.0%
! ATCCAAAAACTTGCTTCATT+AGG - chr7.3:12905132-12905151 MS.gene09872:CDS 30.0%
! GTACATTTGAAGTGATATTG+CGG + chr7.3:12905854-12905873 None:intergenic 30.0%
! TCCAAAAACTTGCTTCATTA+GGG - chr7.3:12905133-12905152 MS.gene09872:CDS 30.0%
! TCTATAAAGTCTAGTCGTTT+TGG + chr7.3:12905801-12905820 None:intergenic 30.0%
! TCTTTCTTACTTCTAGTTGT+TGG - chr7.3:12906935-12906954 MS.gene09872:CDS 30.0%
! TTTTATCAATCCAACTACCT+TGG + chr7.3:12906500-12906519 None:intergenic 30.0%
!! ATTTTCGGAGCATTTTTACT+TGG + chr7.3:12905962-12905981 None:intergenic 30.0%
!! TTTTGGATTAGGAAAAAACG+TGG - chr7.3:12906983-12907002 MS.gene09872:CDS 30.0%
AACTAGAAGTAAGAAAGACC+AGG + chr7.3:12906933-12906952 None:intergenic 35.0%
AATCATAAGTAGTGCATGCA+TGG + chr7.3:12906631-12906650 None:intergenic 35.0%
ACCTAATAAACCAAGGTAGT+TGG - chr7.3:12906487-12906506 MS.gene09872:CDS 35.0%
ACCTTAATGATTTCGGTTTC+TGG + chr7.3:12905239-12905258 None:intergenic 35.0%
ACGACATACCTAATAAACCA+AGG - chr7.3:12906480-12906499 MS.gene09872:CDS 35.0%
ACTTATGATTTCTGTGAAGC+AGG - chr7.3:12906641-12906660 MS.gene09872:CDS 35.0%
GAAACTTTGCTCAAAATGAG+AGG + chr7.3:12904927-12904946 None:intergenic 35.0%
GGATAAATTAAAGAGAGCGA+AGG + chr7.3:12905994-12906013 None:intergenic 35.0%
TATGTTAACTTCAGTTGACG+AGG + chr7.3:12906283-12906302 None:intergenic 35.0%
TCCAACTACCTTGGTTTATT+AGG + chr7.3:12906491-12906510 None:intergenic 35.0%
TGAGAACCCAATAACAGTAA+TGG + chr7.3:12905721-12905740 None:intergenic 35.0%
TGGCAAGAAGATACAAAACA+CGG - chr7.3:12906602-12906621 MS.gene09872:CDS 35.0%
TTAAGGAAAAAGCAGACTTG+AGG + chr7.3:12905684-12905703 None:intergenic 35.0%
TTCACTTCAGCTGCTAAATT+GGG + chr7.3:12905035-12905054 None:intergenic 35.0%
TTTAACACCATTGGATATGC+TGG - chr7.3:12906149-12906168 MS.gene09872:intron 35.0%
! ATGTTTGAGACTGATCATCA+TGG - chr7.3:12905260-12905279 MS.gene09872:CDS 35.0%
! TCCCTAATGAAGCAAGTTTT+TGG + chr7.3:12905137-12905156 None:intergenic 35.0%
! TTCATTTGGCTTCTGCAAAA+GGG - chr7.3:12905075-12905094 MS.gene09872:CDS 35.0%
!! CGAAGGTGTACATACATTTT+CGG + chr7.3:12905977-12905996 None:intergenic 35.0%
!! TGTGTTGACTGTGAATTCTT+TGG + chr7.3:12906396-12906415 None:intergenic 35.0%
!! TTCTTTGGTGATGTTTGTGT+TGG + chr7.3:12906381-12906400 None:intergenic 35.0%
!! TTGGAAACTTCGAGTTTTGT+CGG - chr7.3:12904991-12905010 MS.gene09872:CDS 35.0%
AAAGGCTCAACTTGAACACA+AGG + chr7.3:12905657-12905676 None:intergenic 40.0%
AACTGCTAAAATCCCCATCA+TGG + chr7.3:12906795-12906814 None:intergenic 40.0%
ACACAAGGTCAGATAGAATC+AGG + chr7.3:12905642-12905661 None:intergenic 40.0%
AGAATCAGGGTGAGCTAAAA+TGG + chr7.3:12905628-12905647 None:intergenic 40.0%
AGCTAAAGAAGGAGCTCAAA+GGG - chr7.3:12906224-12906243 MS.gene09872:intron 40.0%
CAACATGGGTTTAACACCAT+TGG - chr7.3:12906140-12906159 MS.gene09872:intron 40.0%
CAATCAGTAATAAGTCCACC+AGG - chr7.3:12906572-12906591 MS.gene09872:CDS 40.0%
CACAAGGTCAGATAGAATCA+GGG + chr7.3:12905641-12905660 None:intergenic 40.0%
CATGTTGCTCACATACATGT+GGG - chr7.3:12906838-12906857 MS.gene09872:CDS 40.0%
GCCAGAAACCGAAATCATTA+AGG - chr7.3:12905235-12905254 MS.gene09872:CDS 40.0%
GTTCACTTCAGCTGCTAAAT+TGG + chr7.3:12905036-12905055 None:intergenic 40.0%
TAGCTAAAGAAGGAGCTCAA+AGG - chr7.3:12906223-12906242 MS.gene09872:intron 40.0%
TCAAAATGAGAGGGTCTCTT+TGG + chr7.3:12904917-12904936 None:intergenic 40.0%
TCATGTTGCTCACATACATG+TGG - chr7.3:12906837-12906856 MS.gene09872:CDS 40.0%
TGCAATGGTGTTTCAGAGAA+GGG + chr7.3:12904957-12904976 None:intergenic 40.0%
TGGATTTCCACTTGGGAATA+AGG - chr7.3:12906769-12906788 MS.gene09872:CDS 40.0%
TGTCAGACGTGCACAAATAA+AGG - chr7.3:12905418-12905437 MS.gene09872:CDS 40.0%
TGTTATTGGGTTCTCATAGC+AGG - chr7.3:12905725-12905744 MS.gene09872:CDS 40.0%
TGTTCGCTATAACCATCTAG+AGG - chr7.3:12905301-12905320 MS.gene09872:CDS 40.0%
TTGCAGAAGCCAAATGAAGA+GGG + chr7.3:12905073-12905092 None:intergenic 40.0%
TTTCTTTGCTTCTCTGTGTG+TGG - chr7.3:12906730-12906749 MS.gene09872:CDS 40.0%
TTTGCAGAAGCCAAATGAAG+AGG + chr7.3:12905074-12905093 None:intergenic 40.0%
! CTTCATTTGGCTTCTGCAAA+AGG - chr7.3:12905074-12905093 MS.gene09872:CDS 40.0%
! GGATTTTCAAAGCCTCTAGA+TGG + chr7.3:12905316-12905335 None:intergenic 40.0%
! TCATCAGTGGATTTCCACTT+GGG - chr7.3:12906762-12906781 MS.gene09872:CDS 40.0%
!! AAACTGGGATACGTTTTGGT+TGG - chr7.3:12906905-12906924 MS.gene09872:CDS 40.0%
!! CAAGAGTGGTGTTTTGGATT+AGG - chr7.3:12906972-12906991 MS.gene09872:CDS 40.0%
AACAACACAGACGCAACAGA+TGG - chr7.3:12906436-12906455 MS.gene09872:intron 45.0%
AACTCACCTAGCAAGACAGT+TGG + chr7.3:12905589-12905608 None:intergenic 45.0%
ACTTGGGAATAAGGCCATGA+TGG - chr7.3:12906778-12906797 MS.gene09872:CDS 45.0%
AGCAAAGAGGCTATGTGCAA+TGG + chr7.3:12904972-12904991 None:intergenic 45.0%
AGCTAAAATGGTATGCAGGC+AGG + chr7.3:12905616-12905635 None:intergenic 45.0%
AGGACGTGTGGAAGCAATTA+AGG - chr7.3:12905196-12905215 MS.gene09872:CDS 45.0%
ATACATGTGGGCACTTGGAT+TGG - chr7.3:12906850-12906869 MS.gene09872:CDS 45.0%
ATCCACTTTGCTGCAATGAG+AGG - chr7.3:12905176-12905195 MS.gene09872:CDS 45.0%
CTAGCAAGACAGTTGGAGTT+GGG + chr7.3:12905582-12905601 None:intergenic 45.0%
CTCATTGCAGCAAAGTGGAT+AGG + chr7.3:12905176-12905195 None:intergenic 45.0%
CTCGAAGTTTCCAAGCAAAG+AGG + chr7.3:12904985-12905004 None:intergenic 45.0%
CTGTGATCCAGCATATCCAA+TGG + chr7.3:12906159-12906178 None:intergenic 45.0%
CTTGGGAATAAGGCCATGAT+GGG - chr7.3:12906779-12906798 MS.gene09872:CDS 45.0%
GCAGCTGAAGTGAACTTAGA+AGG - chr7.3:12905041-12905060 MS.gene09872:CDS 45.0%
GCGAACACACAAGTGTAGAA+TGG + chr7.3:12905288-12905307 None:intergenic 45.0%
GGTGAGCTAAAATGGTATGC+AGG + chr7.3:12905620-12905639 None:intergenic 45.0%
GTGCAATGGTGTTTCAGAGA+AGG + chr7.3:12904958-12904977 None:intergenic 45.0%
TCAGTAATAAGTCCACCAGG+CGG - chr7.3:12906575-12906594 MS.gene09872:CDS 45.0%
TTGCACATAGCCTCTTTGCT+TGG - chr7.3:12904972-12904991 MS.gene09872:CDS 45.0%
TTGGGAATAAGGCCATGATG+GGG - chr7.3:12906780-12906799 MS.gene09872:CDS 45.0%
! CTCATCAGTGGATTTCCACT+TGG - chr7.3:12906761-12906780 MS.gene09872:CDS 45.0%
! CTGCAGTTGTGGGTTATGTT+TGG - chr7.3:12906666-12906685 MS.gene09872:CDS 45.0%
! GGTGATGTTTGTGTTGGTAG+CGG + chr7.3:12906375-12906394 None:intergenic 45.0%
! TCGCAAACTGGGATACGTTT+TGG - chr7.3:12906901-12906920 MS.gene09872:CDS 45.0%
!! ATCATGGCCTTATTCCCAAG+TGG + chr7.3:12906779-12906798 None:intergenic 45.0%
!! GTGTTCAAGTTGAGCCTTTG+AGG - chr7.3:12905658-12905677 MS.gene09872:CDS 45.0%
!!! GATACGTTTTGGTTGGTACC+TGG - chr7.3:12906912-12906931 MS.gene09872:CDS 45.0%
AAGCAGACTTGAGGCCTCAA+AGG + chr7.3:12905675-12905694 None:intergenic 50.0%
ACTTCAGTTGACGAGGAAGC+TGG + chr7.3:12906276-12906295 None:intergenic 50.0%
AGGACGTTGCCCTCTTCATT+TGG - chr7.3:12905061-12905080 MS.gene09872:CDS 50.0%
CCAACTCCAACTGTCTTGCT+AGG - chr7.3:12905580-12905599 MS.gene09872:CDS 50.0%
CCTAGCAAGACAGTTGGAGT+TGG + chr7.3:12905583-12905602 None:intergenic 50.0%
CTCACATACATGTGGGCACT+TGG - chr7.3:12906845-12906864 MS.gene09872:CDS 50.0%
GAAGTGATATTGCGGTGCGT+GGG + chr7.3:12905846-12905865 None:intergenic 50.0%
GTCCTCTCATTGCAGCAAAG+TGG + chr7.3:12905181-12905200 None:intergenic 50.0%
TGAAGTGATATTGCGGTGCG+TGG + chr7.3:12905847-12905866 None:intergenic 50.0%
TGCTTCTCTGTGTGTGGTGT+TGG - chr7.3:12906736-12906755 MS.gene09872:CDS 50.0%
!! GTGGTGTTGGTTCTCATCAG+TGG - chr7.3:12906749-12906768 MS.gene09872:CDS 50.0%
ATCCTCGTGCAGCTAGTGAG+AGG - chr7.3:12905332-12905351 MS.gene09872:intron 55.0%
GCAAGACAGTTGGAGTTGGG+AGG + chr7.3:12905579-12905598 None:intergenic 55.0%
TAAGTCCACCAGGCGGTGTT+TGG - chr7.3:12906582-12906601 MS.gene09872:CDS 55.0%
TCTTCTTGCCAAACACCGCC+TGG + chr7.3:12906593-12906612 None:intergenic 55.0%
TGCTGCAATGAGAGGACGTG+TGG - chr7.3:12905184-12905203 MS.gene09872:CDS 55.0%
TTCCTCTCACTAGCTGCACG+AGG + chr7.3:12905337-12905356 None:intergenic 55.0%
! GAAGCAGGCACTGCAGTTGT+GGG - chr7.3:12906656-12906675 MS.gene09872:CDS 55.0%
! TGAAGCAGGCACTGCAGTTG+TGG - chr7.3:12906655-12906674 MS.gene09872:CDS 55.0%
!! GTTTGTGTTGGTAGCGGCTG+TGG + chr7.3:12906369-12906388 None:intergenic 55.0%
TCTTGCCAAACACCGCCTGG+TGG + chr7.3:12906590-12906609 None:intergenic 60.0%
!! GTTGGTAGCGGCTGTGGTTG+TGG + chr7.3:12906363-12906382 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 12904855 12907060 12904855 ID=MS.gene09872
chr7.3 mRNA 12904855 12907060 12904855 ID=MS.gene09872.t1;Parent=MS.gene09872
chr7.3 exon 12906476 12907060 12906476 ID=MS.gene09872.t1.exon1;Parent=MS.gene09872.t1
chr7.3 CDS 12906476 12907060 12906476 ID=cds.MS.gene09872.t1;Parent=MS.gene09872.t1
chr7.3 exon 12905414 12905831 12905414 ID=MS.gene09872.t1.exon2;Parent=MS.gene09872.t1
chr7.3 CDS 12905414 12905831 12905414 ID=cds.MS.gene09872.t1;Parent=MS.gene09872.t1
chr7.3 exon 12904855 12905336 12904855 ID=MS.gene09872.t1.exon3;Parent=MS.gene09872.t1
chr7.3 CDS 12904855 12905336 12904855 ID=cds.MS.gene09872.t1;Parent=MS.gene09872.t1
Gene Sequence

>MS.gene09872

ATGAGAGAGCTCTACAATGCATCATTAAATGGAAGTGTAAGTTCCTTAAGAACATTGATCCAAAGAGACCCTCTCATTTTGAGCAAAGTTTCGTTGTATCCCTTCTCTGAAACACCATTGCACATAGCCTCTTTGCTTGGAAACTTCGAGTTTTGTCGGATTCTTCTTGATATAGATCCCAATTTAGCAGCTGAAGTGAACTTAGAAGGACGTTGCCCTCTTCATTTGGCTTCTGCAAAAGGGTACACTGAGATTGTGAGAGCAATATTGTTGACAAATCCAAAAACTTGCTTCATTAGGGACAAAGATGACAAGCTTCCTATCCACTTTGCTGCAATGAGAGGACGTGTGGAAGCAATTAAGGAATTGAATAGTGTCATGCCAGAAACCGAAATCATTAAGGTGATGTTTGAGACTGATCATCATGGTTCCATTCTACACTTGTGTGTTCGCTATAACCATCTAGAGGCTTTGAAAATCCTCGTGCAGCTAGTGAGAGGAAACAATAGATTACAATTCTTATCTGTCAAAGACAAAGAAGGTAACACTGTTCTGCATTTAGCTGTCAGACGTGCACAAATAAAGGTACTGCTTGCCATTTTTCTAAAATAACTTGAATGTTTTCTCAACTATAGTATTTTCTCCAAATTATTTATATTAAATCACCTCTATTTTAATCTATAACAAACGGACTTATAGTTGACTCAATCAATACATTTTACCTCCCAACTCCAACTGTCTTGCTAGGTGAGTTGTGACCTGCCTGCATACCATTTTAGCTCACCCTGATTCTATCTGACCTTGTGTTCAAGTTGAGCCTTTGAGGCCTCAAGTCTGCTTTTTCCTTAATTCTTGTATATAAACCATTACTGTTATTGGGTTCTCATAGCAGGTTGAACTTTGAGAGCGACCCAATGTGAAGAGTATTGATTGAGATATCGATCCAAAACGACTAGACTTTATAGACTTGAAATTTAAGGAAGAACTTCCCACGCACCGCAATATCACTTCAAATGTACATGTCATAAAAAAAATGTAAATGTTATGCCGTCTAAAAGAACACATTCATACAAAACATGTCATTCAAAAGTACACAAATGTGTGCCAAGTAAAAATGCTCCGAAAATGTATGTACACCTTCGCTCTCTTTAATTTATCCCGTATGAAACTTACATGTTCATCAACATAAAACAATAGAAAAGGCTCTACTAACTTGTGTAACATTGCAGATCATTAAATACTTGCTATCACTGTCTGAAATGAGCACAGCTATAAATAATTTGAACAACATGGGTTTAACACCATTGGATATGCTGGATCACAGTTCAAGAGATTTTGATTTTATTAGTCTTACAATCGATCATATGTTAGCTAAAGAAGGAGCTCAAAGGGCTACAAATATTGTCACAACACATCTACCAGCTTCCTCGTCAACTGAAGTTAACATACACCAAATGACAATGTCACAAAATATAGTTTCTGCACAACAAGATCATATGCTCTCGCCACAACCACAGCCGCTACCAACACAAACATCACCAAAGAATTCACAGTCAACACAAACATCAAACACTACTAATGAACAACACAGACGCAACAGATGGAACATGTTTGAGAACTTCTGCACGACATACCTAATAAACCAAGGTAGTTGGATTGATAAAAAGACAAAAGAACAATTCATGGTAGCAGCATTGTAATCGCAACAATGACATTTCAATCAGTAATAAGTCCACCAGGCGGTGTTTGGCAAGAAGATACAAAACACGGTAACCATGCATGCACTACTTATGATTTCTGTGAAGCAGGCACTGCAGTTGTGGGTTATGTTTGGTCACCAGATTTTATGAAATTTATATTTTTCAACTCTGCATCTTTCTTTGCTTCTCTGTGTGTGGTGTTGGTTCTCATCAGTGGATTTCCACTTGGGAATAAGGCCATGATGGGGATTTTAGCAGTTTTAATGATAATTGCTGTCACGTTCATGTTGCTCACATACATGTGGGCACTTGGATTGGTGAGTCCTAATCATGTTTATTATAGAATTCGCAAACTGGGATACGTTTTGGTTGGTACCTGGTCTTTCTTACTTCTAGTTGTTGGTTTGATTCAAATTACAAGAGTGGTGTTTTGGATTAGGAAAAAACGTGGATTATCGACAAATGCTTTGTTGAGTCAAAATTCTCCTGATCAGTTGAATAGCTAA
Protein sequence

>MS.gene09872.t1

MRELYNASLNGSVSSLRTLIQRDPLILSKVSLYPFSETPLHIASLLGNFEFCRILLDIDPNLAAEVNLEGRCPLHLASAKGYTEIVRAILLTNPKTCFIRDKDDKLPIHFAAMRGRVEAIKELNSVMPETEIIKVMFETDHHGSILHLCVRYNHLEALKILVQLVRGNNRLQFLSVKDKEGNTVLHLAVRRAQIKIIKYLLSLSEMSTAINNLNNMGLTPLDMLDHSSRDFDFISLTIDHMLAKEGAQRATNIVTTHLPASSSTEVNIHQMTMSQNIVSAQQDHMLSPQPQPLPTQTSPKNSQSTQTSNTTNEQHRRNRWNMFENFCTTYLINQVISPPGGVWQEDTKHGNHACTTYDFCEAGTAVVGYVWSPDFMKFIFFNSASFFASLCVVLVLISGFPLGNKAMMGILAVLMIIAVTFMLLTYMWALGLVSPNHVYYRIRKLGYVLVGTWSFLLLVVGLIQITRVVFWIRKKRGLSTNALLSQNSPDQLNS