AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09874


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09874.t1 MTR_7g099570 94.106 509 29 1 1 508 6 514 0.0 896
MS.gene09874.t1 MTR_7g099580 67.692 195 62 1 1 194 9 203 5.15e-86 270
MS.gene09874.t1 MTR_7g099580 78.723 47 10 0 419 465 238 284 6.14e-17 82.8
MS.gene09874.t1 MTR_1g069110 43.446 267 112 2 1 267 15 242 6.38e-59 203
MS.gene09874.t1 MTR_1g069110 50.000 128 60 2 381 508 236 359 5.48e-34 134
MS.gene09874.t1 MTR_7g099550 57.143 105 40 1 63 167 136 235 7.12e-30 117
MS.gene09874.t1 MTR_2g101320 23.721 430 256 7 32 461 134 491 5.02e-25 109
MS.gene09874.t1 MTR_2g101310 29.493 217 145 3 32 248 134 342 6.02e-23 102
MS.gene09874.t1 MTR_2g101310 22.869 481 318 13 4 461 40 490 6.22e-14 74.7
MS.gene09874.t1 MTR_2g101310 29.493 217 145 3 32 248 134 342 1.21e-22 102
MS.gene09874.t1 MTR_2g101310 22.744 532 339 17 4 510 40 524 5.00e-15 78.6
MS.gene09874.t1 MTR_7g021090 28.251 223 146 3 4 217 9 226 1.10e-21 97.8
MS.gene09874.t1 MTR_1g059930 30.526 190 118 4 4 184 12 196 2.30e-20 94.4
MS.gene09874.t1 MTR_3g016210 30.052 193 121 4 4 187 10 197 3.40e-20 94.0
MS.gene09874.t1 MTR_8g072510 30.052 193 121 3 4 187 10 197 4.41e-20 93.6
MS.gene09874.t1 MTR_8g073260 29.557 203 129 5 7 200 14 211 7.35e-20 92.8
MS.gene09874.t1 MTR_8g068990 28.251 223 135 3 6 220 14 219 3.01e-19 90.9
MS.gene09874.t1 MTR_8g069880 31.579 190 116 4 7 187 10 194 8.49e-19 89.7
MS.gene09874.t1 MTR_8g062410 30.102 196 123 3 4 190 10 200 8.83e-19 89.7
MS.gene09874.t1 MTR_8g039620 27.536 207 136 3 4 201 14 215 4.12e-18 87.4
MS.gene09874.t1 MTR_7g451420 30.000 190 119 3 7 187 12 196 1.26e-17 84.3
MS.gene09874.t1 MTR_8g467780 30.688 189 117 3 7 186 14 197 2.89e-16 81.6
MS.gene09874.t1 MTR_1g115575 28.082 292 177 10 4 287 135 401 3.34e-16 82.0
MS.gene09874.t1 MTR_3g105650 28.351 194 125 3 4 188 5 193 6.58e-16 80.5
MS.gene09874.t1 MTR_7g100390 30.811 185 116 4 16 199 100 273 9.24e-16 80.5
MS.gene09874.t1 MTR_7g100390 28.177 181 119 4 39 217 87 258 2.01e-12 70.1
MS.gene09874.t1 MTR_8g066670 24.436 266 177 6 16 264 1087 1345 1.38e-14 77.8
MS.gene09874.t1 MTR_1g032100 26.939 245 158 6 39 282 94 318 3.09e-14 75.9
MS.gene09874.t1 MTR_4g062100 27.027 222 112 3 30 250 133 305 3.62e-14 75.5
MS.gene09874.t1 MTR_2g096190 29.744 195 125 4 7 200 108 291 3.70e-14 75.5
MS.gene09874.t1 MTR_2g096190 28.641 206 128 5 4 204 70 261 1.08e-13 73.9
MS.gene09874.t1 MTR_7g117620 33.333 216 121 8 4 214 85 282 7.56e-14 74.7
MS.gene09874.t1 MTR_8g105260 27.230 213 143 5 39 250 101 302 2.39e-13 73.2
MS.gene09874.t1 MTR_7g100430 31.515 165 103 3 39 202 161 316 3.32e-12 69.3
MS.gene09874.t1 MTR_7g087540 51.471 68 29 4 414 480 25 89 2.54e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09874.t1 AT4G10720 28.472 288 186 9 11 286 12 291 2.11e-22 100
MS.gene09874.t1 AT5G54610 32.569 218 134 5 11 220 12 224 3.66e-22 99.8
MS.gene09874.t1 AT4G10720 28.472 288 186 9 11 286 12 291 4.47e-22 99.8
MS.gene09874.t1 AT5G54620 31.336 217 135 4 2 209 3 214 8.21e-22 98.6
MS.gene09874.t1 AT5G51160 29.224 219 135 6 65 273 42 250 3.76e-19 90.5
MS.gene09874.t1 AT5G15500 25.952 289 193 6 2 274 4 287 7.49e-19 89.7
MS.gene09874.t1 AT1G14480 30.049 203 128 5 7 200 8 205 9.83e-19 89.4
MS.gene09874.t1 AT1G14500 28.079 203 132 3 7 200 8 205 1.66e-17 85.5
MS.gene09874.t1 AT1G14480 32.298 161 100 3 7 163 8 163 2.17e-17 84.7
MS.gene09874.t1 AT2G31820 32.353 204 119 6 4 202 193 382 1.10e-16 84.0
MS.gene09874.t1 AT2G31820 30.412 194 123 7 7 199 231 413 1.69e-12 70.5
MS.gene09874.t1 AT5G60070 31.176 170 106 5 39 206 111 271 2.34e-15 79.3
MS.gene09874.t1 AT5G50140 23.894 339 213 12 35 353 26 339 3.21e-14 75.9
MS.gene09874.t1 AT3G12360 27.551 294 176 10 4 287 121 387 3.60e-13 72.8
MS.gene09874.t1 AT3G12360 27.551 294 176 10 4 287 133 399 3.67e-13 72.8
MS.gene09874.t1 AT1G07710 28.638 213 105 5 7 217 108 275 4.35e-13 72.4
MS.gene09874.t1 AT1G07710 28.638 213 105 5 7 217 108 275 4.35e-13 72.4
MS.gene09874.t1 AT3G13950 39.655 116 65 3 397 508 4 118 1.09e-12 67.8
MS.gene09874.t1 AT5G02620 27.189 217 144 6 4 217 60 265 2.53e-12 69.7
MS.gene09874.t1 AT5G02620 27.189 217 144 6 4 217 60 265 2.53e-12 69.7
MS.gene09874.t1 AT5G02620 27.189 217 144 6 4 217 60 265 2.53e-12 69.7
MS.gene09874.t1 AT1G05640 29.317 249 144 8 39 282 191 412 3.86e-12 69.3
MS.gene09874.t1 AT5G54710 28.090 178 119 4 55 230 182 352 7.59e-12 68.6
MS.gene09874.t1 AT5G54710 28.090 178 119 4 55 230 227 397 7.81e-12 68.6
MS.gene09874.t1 AT3G09550 28.856 201 130 6 4 202 154 343 5.03e-11 65.9
MS.gene09874.t1 AT3G09550 28.856 201 130 6 4 202 147 336 5.04e-11 65.9
MS.gene09874.t1 AT3G09550 28.856 201 130 6 4 202 147 336 5.04e-11 65.9

Find 112 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGAGGGTAACAATATTT+TGG 0.140494 7.3:-12912886 MS.gene09874:CDS
TCGCGAATCAAGCAAGTTTC+TGG 0.144507 7.3:+12913137 None:intergenic
TGCACTTATCAACTCCTTAA+TGG 0.167211 7.3:+12913061 None:intergenic
TCCAATAACCTTGGTTTATT+AGG 0.187112 7.3:+12911859 None:intergenic
ACCTAATAAACCAAGGTTAT+TGG 0.210805 7.3:-12911860 MS.gene09874:CDS
CTCTATGGTGCATCATTAAA+AGG 0.232219 7.3:-12913407 MS.gene09874:CDS
TGGTGGTTGTGAAGGACTTT+TGG 0.265187 7.3:+12912103 None:intergenic
ACCCGAATAGTTTCTGTTTC+CGG 0.272426 7.3:+12913035 None:intergenic
AACAACATGAACACAATAGA+TGG 0.289553 7.3:-12911911 MS.gene09874:CDS
AAAGACAAGAGAACAATTAA+TGG 0.291148 7.3:-12911829 MS.gene09874:CDS
TGCATCACTATGTGTGCTTT+TGG 0.293332 7.3:-12911610 MS.gene09874:CDS
GGTTACGCTTGTCCTGATTA+TGG 0.311723 7.3:-12911720 MS.gene09874:CDS
GTAAAGAAGCTATGTGTAAT+GGG 0.322353 7.3:+12913303 None:intergenic
GAAAATCCTCTGCCACACTA+TGG 0.322481 7.3:-12911199 MS.gene09874:CDS
TATCAAACGAGGACAAATTA+AGG 0.325515 7.3:-12912856 MS.gene09874:intron
AGCTCTTAAAGCTTCTGTTT+TGG 0.341636 7.3:+12912469 None:intergenic
TGCCGGAAACAGAAACTATT+CGG 0.348258 7.3:-12913037 MS.gene09874:CDS
CTAGAATTGTGTTCTGGGTT+AGG 0.351230 7.3:-12911374 MS.gene09874:CDS
GAAAACACACAAGTGCAAAA+TGG 0.355298 7.3:+12912986 None:intergenic
AAATAGCTAGAATTGTGTTC+TGG 0.368470 7.3:-12911380 MS.gene09874:intron
TTAGTCCACCGGGCGGTGTT+TGG 0.379011 7.3:-12911764 MS.gene09874:CDS
AAAATGAATTTAAGATAATC+TGG 0.381714 7.3:+12911654 None:intergenic
TAGTCCACCGGGCGGTGTTT+GGG 0.381761 7.3:-12911763 MS.gene09874:CDS
TTACACATAGCTTCTTTACT+TGG 0.383128 7.3:-12913299 MS.gene09874:CDS
CTTCATCTAGCTTCGGCAAA+AGG 0.398211 7.3:-12913197 MS.gene09874:CDS
GAAACTCTACTTAGAATTAG+AGG 0.414613 7.3:+12913347 None:intergenic
GTCCTCTCATTACAGCAAAA+TGG 0.414637 7.3:+12913093 None:intergenic
AGGACGCATAGGAACCATTA+AGG 0.421682 7.3:-12913075 MS.gene09874:CDS
TCTATAATGAGAAACCTCTA+TGG 0.422323 7.3:-12913422 None:intergenic
AATAGCTAGAATTGTGTTCT+GGG 0.426330 7.3:-12911379 MS.gene09874:intron
TTCACATCAGCTGCTAAGTT+GGG 0.430939 7.3:+12913239 None:intergenic
AGTAAAGAAGCTATGTGTAA+TGG 0.433633 7.3:+12913302 None:intergenic
ATCGATGATTGTTGTGGTTG+TGG 0.434864 7.3:+12912197 None:intergenic
TTGTGTTCTGGGTTAGGTCT+AGG 0.438558 7.3:-12911368 MS.gene09874:CDS
TTTAAGAGCTTTATATATGT+TGG 0.440411 7.3:-12912456 MS.gene09874:CDS
CTGCAGTTGTAGGATATGTT+TGG 0.441485 7.3:-12911680 MS.gene09874:CDS
TGTAATGGGGTTTCAGAGAA+TGG 0.449861 7.3:+12913317 None:intergenic
GTTCACATCAGCTGCTAAGT+TGG 0.450012 7.3:+12913238 None:intergenic
ATCTAAGTTAAAAGTAGAAA+AGG 0.458916 7.3:-12911321 MS.gene09874:intron
TTGTGTGGTGATGGTGATTG+TGG 0.460725 7.3:+12912044 None:intergenic
AGTTGTAGAGGATGACTAAT+CGG 0.467947 7.3:+12912143 None:intergenic
TTGCCCTCTTCATCTAGCTT+CGG 0.469951 7.3:-12913204 MS.gene09874:CDS
TGTTGTTCATTAGCTATGCT+TGG 0.473040 7.3:+12911927 None:intergenic
GCCGGAAACAGAAACTATTC+GGG 0.478264 7.3:-12913036 MS.gene09874:CDS
GAAGCAGGAACTGCAGTTGT+AGG 0.479785 7.3:-12911690 MS.gene09874:CDS
TCATTAGCTATGCTTGGTGT+TGG 0.483018 7.3:+12911933 None:intergenic
TTGTGGATGTTGAGGCTCAT+TGG 0.485922 7.3:+12912061 None:intergenic
TTCATCTAGCTTCGGCAAAA+GGG 0.485961 7.3:-12913196 MS.gene09874:CDS
TCAGTCAGTAATTAGTCCAC+CGG 0.487845 7.3:-12911775 MS.gene09874:CDS
AACTGTTGAGGATCATTCCT+TGG 0.489385 7.3:+12912323 None:intergenic
GTATGGCTAGCAAAATCTCT+TGG 0.489498 7.3:+12912425 None:intergenic
GAGGATGACTAATCGGTGAT+TGG 0.491854 7.3:+12912150 None:intergenic
TCAAAATGTGTTGAATTGTA+TGG 0.493536 7.3:+12912408 None:intergenic
GCTATGCTTGGTGTTGGTGA+AGG 0.497302 7.3:+12911939 None:intergenic
GGGTCGTCACTTGGTGAGAA+TGG 0.511325 7.3:+12911960 None:intergenic
AAAATCCTCTGCCACACTAT+GGG 0.517000 7.3:-12911198 MS.gene09874:CDS
GAAGGATTTGTTAGTTGTAG+AGG 0.529973 7.3:+12912131 None:intergenic
GGAGTTGATAAGTGCAATGC+CGG 0.532038 7.3:-12913054 MS.gene09874:CDS
TGCTTCCCATAGTGTGGCAG+AGG 0.532654 7.3:+12911193 None:intergenic
GAACAACATTCACAAATCAA+TGG 0.538302 7.3:-12912296 MS.gene09874:CDS
TTGTGAGATGGTGGTTGTGA+AGG 0.538920 7.3:+12912095 None:intergenic
AGTGAGGGATTGTGAGATGG+TGG 0.541315 7.3:+12912086 None:intergenic
CTTGGTGAGAATGGTGGTGG+TGG 0.543098 7.3:+12911969 None:intergenic
TGGGAAGAAGATACAACAAA+AGG 0.543938 7.3:-12911744 MS.gene09874:CDS
CTCCTCTCATTGATTCAACA+AGG 0.545286 7.3:+12912937 None:intergenic
AACAGAAACTATTCGGGTGA+TGG 0.549369 7.3:-12913030 MS.gene09874:CDS
TCTTCTTCCCAAACACCGCC+CGG 0.555882 7.3:+12911756 None:intergenic
GCCACACTATGGGAAGCACT+TGG 0.556613 7.3:-12911188 MS.gene09874:CDS
AATGGTGGTGGTGGTTGTAG+AGG 0.556799 7.3:+12911978 None:intergenic
TTTGTCTTCTAAAGACAAAG+AGG 0.558670 7.3:-12912901 MS.gene09874:CDS
ATGAACACAATAGATGGGAC+AGG 0.562692 7.3:-12911905 MS.gene09874:CDS
TTGAGGCTCATTGGTTAGTG+AGG 0.568784 7.3:+12912070 None:intergenic
CTATGCTTGGTGTTGGTGAA+GGG 0.569653 7.3:+12911940 None:intergenic
TCCAAGTGCTTCCCATAGTG+TGG 0.571682 7.3:+12911187 None:intergenic
GTAGGATCATTGTGTGGTGA+TGG 0.571721 7.3:+12912035 None:intergenic
CAGTCAGTAATTAGTCCACC+GGG 0.572133 7.3:-12911774 MS.gene09874:CDS
TGAGGCTCATTGGTTAGTGA+GGG 0.573688 7.3:+12912071 None:intergenic
GGTTGTAGAGGATTGAGGCC+TGG 0.573875 7.3:+12911990 None:intergenic
TTGTCTTCTAAAGACAAAGA+GGG 0.575204 7.3:-12912900 MS.gene09874:CDS
TTAGATATTTGTGGAGGACG+AGG 0.576543 7.3:+12911338 None:intergenic
GCAGCTGATGTGAACTCAGA+AGG 0.582169 7.3:-12913230 MS.gene09874:CDS
GTTGGTGAAGGGTCGTCACT+TGG 0.585627 7.3:+12911951 None:intergenic
ATGGCTGAGATTGATGATCA+TGG 0.588724 7.3:-12913011 MS.gene09874:CDS
AAACTCTACTTAGAATTAGA+GGG 0.589124 7.3:+12913348 None:intergenic
GTGGTGGTTGTAGAGGATTG+AGG 0.597688 7.3:+12911985 None:intergenic
TCACTTGGTGAGAATGGTGG+TGG 0.599059 7.3:+12911966 None:intergenic
GATGGTGATTGTGGATGTTG+AGG 0.600949 7.3:+12912053 None:intergenic
TCATTTATCGATGATTGTTG+TGG 0.602451 7.3:+12912191 None:intergenic
TTTGCCGAAGCTAGATGAAG+AGG 0.604364 7.3:+12913200 None:intergenic
ATCCTTGTTGAATCAATGAG+AGG 0.608497 7.3:-12912939 MS.gene09874:CDS
ACAACATGAACACAATAGAT+GGG 0.609468 7.3:-12911910 MS.gene09874:CDS
TCTGGGTTAGGTCTAGGCGC+AGG 0.609783 7.3:-12911362 MS.gene09874:CDS
GAATGTGTAATTTCTTGTGT+AGG 0.616234 7.3:+12912017 None:intergenic
CTCATTACAGCAAAATGGAG+AGG 0.616904 7.3:+12913098 None:intergenic
TTGCCGAAGCTAGATGAAGA+GGG 0.617908 7.3:+12913201 None:intergenic
GTTAGTGAGGGATTGTGAGA+TGG 0.623672 7.3:+12912083 None:intergenic
GAAGAAGATACAACAAAAGG+TGG 0.625546 7.3:-12911741 MS.gene09874:CDS
GCTGTAATGAGAGGACGCAT+AGG 0.625725 7.3:-12913086 MS.gene09874:CDS
TCGTCACTTGGTGAGAATGG+TGG 0.634283 7.3:+12911963 None:intergenic
TTTAACTTAGATATTTGTGG+AGG 0.636829 7.3:+12911332 None:intergenic
GATTGGACTAGAGTTACTTG+AGG 0.640890 7.3:+12912167 None:intergenic
AACAAATACCTAATAAACCA+AGG 0.645161 7.3:-12911867 MS.gene09874:CDS
TAAAGAAGCTATGTGTAATG+GGG 0.652798 7.3:+12913304 None:intergenic
GAAATTACACATTCATCACC+AGG 0.657014 7.3:-12912008 MS.gene09874:CDS
AAGATCATGTTAACTCACCA+AGG 0.659607 7.3:-12912340 MS.gene09874:CDS
GATGATTGTTGTGGTTGTGG+AGG 0.661128 7.3:+12912200 None:intergenic
TCTTCCCAAACACCGCCCGG+TGG 0.662288 7.3:+12911759 None:intergenic
TGTTGTTCTAGTAACTGTTG+AGG 0.666844 7.3:+12912311 None:intergenic
TCTTGTGTAGGATCATTGTG+TGG 0.698697 7.3:+12912029 None:intergenic
TGAACACAATAGATGGGACA+GGG 0.709494 7.3:-12911904 MS.gene09874:CDS
TTGGATTTAGCTATCAAACG+AGG 0.710414 7.3:-12912867 MS.gene09874:CDS
TCAGTAATTAGTCCACCGGG+CGG 0.788117 7.3:-12911771 MS.gene09874:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATAAAAGAAAACTACA+AGG - chr7.3:12911950-12911969 MS.gene09874:CDS 15.0%
!!! AAAATGAATTTAAGATAATC+TGG + chr7.3:12912933-12912952 None:intergenic 15.0%
!! ACTATAAACTTATTATGAAG+AGG + chr7.3:12913017-12913036 None:intergenic 20.0%
!! ATCCAATTATTCATATGAAA+AGG + chr7.3:12912008-12912027 None:intergenic 20.0%
!! ATCTAAGTTAAAAGTAGAAA+AGG - chr7.3:12913263-12913282 MS.gene09874:CDS 20.0%
!! ATTCTATAGAAAATGTGATT+AGG + chr7.3:12913119-12913138 None:intergenic 20.0%
!! TCATAATAAGTTTATAGTGT+GGG - chr7.3:12913019-12913038 MS.gene09874:CDS 20.0%
!! TTCATAATAAGTTTATAGTG+TGG - chr7.3:12913018-12913037 MS.gene09874:CDS 20.0%
!! TTTCAACAACAGATAAATTT+AGG - chr7.3:12911759-12911778 MS.gene09874:CDS 20.0%
!!! AACCTTTTCATATGAATAAT+TGG - chr7.3:12912003-12912022 MS.gene09874:CDS 20.0%
!!! ACTTTTAACTTAGATATTTG+TGG + chr7.3:12913258-12913277 None:intergenic 20.0%
!!! TTTAAGAGCTTTATATATGT+TGG - chr7.3:12912128-12912147 MS.gene09874:CDS 20.0%
! AAACTCTACTTAGAATTAGA+GGG + chr7.3:12911239-12911258 None:intergenic 25.0%
! AAAGACAAGAGAACAATTAA+TGG - chr7.3:12912755-12912774 MS.gene09874:intron 25.0%
! AACAAATACCTAATAAACCA+AGG - chr7.3:12912717-12912736 MS.gene09874:intron 25.0%
! AATAAGATGAAAGTCTATTG+TGG - chr7.3:12911851-12911870 MS.gene09874:CDS 25.0%
! ATTCATATGAAAAGGTTTCA+AGG + chr7.3:12912000-12912019 None:intergenic 25.0%
! TCAAAATGTGTTGAATTGTA+TGG + chr7.3:12912179-12912198 None:intergenic 25.0%
! TTCATATGAAAAGGTTTCAA+GGG + chr7.3:12911999-12912018 None:intergenic 25.0%
! TTCTATAGAATTCGTGATTT+AGG - chr7.3:12913128-12913147 MS.gene09874:CDS 25.0%
!! TGTTTTCTATAATCATCTAG+AGG - chr7.3:12911614-12911633 MS.gene09874:CDS 25.0%
!! TTTAACTTAGATATTTGTGG+AGG + chr7.3:12913255-12913274 None:intergenic 25.0%
!! TTTTATCTATCCAATAACCT+TGG + chr7.3:12912737-12912756 None:intergenic 25.0%
AAATAGCTAGAATTGTGTTC+TGG - chr7.3:12913204-12913223 MS.gene09874:CDS 30.0%
AACAACATGAACACAATAGA+TGG - chr7.3:12912673-12912692 MS.gene09874:intron 30.0%
AAGCTTAAATTGATAGGAGT+TGG + chr7.3:12913338-12913357 None:intergenic 30.0%
AATAGCTAGAATTGTGTTCT+GGG - chr7.3:12913205-12913224 MS.gene09874:CDS 30.0%
ACAACATGAACACAATAGAT+GGG - chr7.3:12912674-12912693 MS.gene09874:intron 30.0%
ACCTAATAAACCAAGGTTAT+TGG - chr7.3:12912724-12912743 MS.gene09874:intron 30.0%
AGCTTAAATTGATAGGAGTT+GGG + chr7.3:12913337-12913356 None:intergenic 30.0%
AGTAAAGAAGCTATGTGTAA+TGG + chr7.3:12911285-12911304 None:intergenic 30.0%
CACATGAAGCTTAAATTGAT+AGG + chr7.3:12913344-12913363 None:intergenic 30.0%
GAAACTCTACTTAGAATTAG+AGG + chr7.3:12911240-12911259 None:intergenic 30.0%
GAACAACATTCACAAATCAA+TGG - chr7.3:12912288-12912307 MS.gene09874:CDS 30.0%
GAATGTGTAATTTCTTGTGT+AGG + chr7.3:12912570-12912589 None:intergenic 30.0%
GTAAAGAAGCTATGTGTAAT+GGG + chr7.3:12911284-12911303 None:intergenic 30.0%
GTTATATCTTGGTTGGAATT+TGG - chr7.3:12913150-12913169 MS.gene09874:CDS 30.0%
TAAAGAAGCTATGTGTAATG+GGG + chr7.3:12911283-12911302 None:intergenic 30.0%
TATCAAACGAGGACAAATTA+AGG - chr7.3:12911728-12911747 MS.gene09874:CDS 30.0%
TCATTTATCGATGATTGTTG+TGG + chr7.3:12912396-12912415 None:intergenic 30.0%
TCCAATAACCTTGGTTTATT+AGG + chr7.3:12912728-12912747 None:intergenic 30.0%
TTACACATAGCTTCTTTACT+TGG - chr7.3:12911285-12911304 MS.gene09874:intron 30.0%
! CAAAGAGGGTAACAATATTT+TGG - chr7.3:12911698-12911717 MS.gene09874:CDS 30.0%
! GATTTAGGTTATATCTTGGT+TGG - chr7.3:12913143-12913162 MS.gene09874:CDS 30.0%
! GCATATGCAAATGTAGTTTT+TGG + chr7.3:12913315-12913334 None:intergenic 30.0%
! TAAGTTTATAGTGTGGGTTT+TGG - chr7.3:12913025-12913044 MS.gene09874:CDS 30.0%
! TATGTTGCTTACATACATGT+GGG - chr7.3:12913076-12913095 MS.gene09874:CDS 30.0%
! TCGTGATTTAGGTTATATCT+TGG - chr7.3:12913139-12913158 MS.gene09874:CDS 30.0%
! TTAGAATTAGAGGGTCTTTT+TGG + chr7.3:12911230-12911249 None:intergenic 30.0%
! TTGTCTTCTAAAGACAAAGA+GGG - chr7.3:12911684-12911703 MS.gene09874:CDS 30.0%
! TTTGTCTTCTAAAGACAAAG+AGG - chr7.3:12911683-12911702 MS.gene09874:CDS 30.0%
!! TAAGCTTCATGTGTTGATTT+AGG - chr7.3:12913351-12913370 MS.gene09874:CDS 30.0%
AAGATCATGTTAACTCACCA+AGG - chr7.3:12912244-12912263 MS.gene09874:CDS 35.0%
AGTTGTAGAGGATGACTAAT+CGG + chr7.3:12912444-12912463 None:intergenic 35.0%
ATCCTTGTTGAATCAATGAG+AGG - chr7.3:12911645-12911664 MS.gene09874:CDS 35.0%
CTCTATGGTGCATCATTAAA+AGG - chr7.3:12911177-12911196 MS.gene09874:CDS 35.0%
GAAAACACACAAGTGCAAAA+TGG + chr7.3:12911601-12911620 None:intergenic 35.0%
GAAATTACACATTCATCACC+AGG - chr7.3:12912576-12912595 MS.gene09874:intron 35.0%
GAAGAAGATACAACAAAAGG+TGG - chr7.3:12912843-12912862 MS.gene09874:intron 35.0%
GCTTCACAAAAACCATAATC+AGG + chr7.3:12912879-12912898 None:intergenic 35.0%
TGCACTTATCAACTCCTTAA+TGG + chr7.3:12911526-12911545 None:intergenic 35.0%
TGGGAAGAAGATACAACAAA+AGG - chr7.3:12912840-12912859 MS.gene09874:intron 35.0%
TGTTGTTCATTAGCTATGCT+TGG + chr7.3:12912660-12912679 None:intergenic 35.0%
TGTTGTTCTAGTAACTGTTG+AGG + chr7.3:12912276-12912295 None:intergenic 35.0%
TTCATGAAAGAGAGTCATGT+AGG + chr7.3:12913292-12913311 None:intergenic 35.0%
TTGGATTTAGCTATCAAACG+AGG - chr7.3:12911717-12911736 MS.gene09874:CDS 35.0%
! AGCTCTTAAAGCTTCTGTTT+TGG + chr7.3:12912118-12912137 None:intergenic 35.0%
! CTTTTAATGATGCACCATAG+AGG + chr7.3:12911179-12911198 None:intergenic 35.0%
! GATTATGGTTTTTGTGAAGC+AGG - chr7.3:12912879-12912898 MS.gene09874:CDS 35.0%
! GTATGTTGCTTACATACATG+TGG - chr7.3:12913075-12913094 MS.gene09874:CDS 35.0%
! TTTTGTGGAGGATCATTGTT+TGG + chr7.3:12912339-12912358 None:intergenic 35.0%
!! GAAGGATTTGTTAGTTGTAG+AGG + chr7.3:12912456-12912475 None:intergenic 35.0%
!! TCTTAAAGCTTCTGTTTTGG+AGG + chr7.3:12912115-12912134 None:intergenic 35.0%
!!! TGTGATGGTTGTTGATTTTG+TGG + chr7.3:12912354-12912373 None:intergenic 35.0%
AAAATCCTCTGCCACACTAT+GGG - chr7.3:12913386-12913405 MS.gene09874:CDS 40.0%
AACAGAAACTATTCGGGTGA+TGG - chr7.3:12911554-12911573 MS.gene09874:intron 40.0%
AACTGTTGAGGATCATTCCT+TGG + chr7.3:12912264-12912283 None:intergenic 40.0%
ACCCGAATAGTTTCTGTTTC+CGG + chr7.3:12911552-12911571 None:intergenic 40.0%
AGTCTATTGTGGCAGATAGA+AGG - chr7.3:12911862-12911881 MS.gene09874:CDS 40.0%
ATCGATGATTGTTGTGGTTG+TGG + chr7.3:12912390-12912409 None:intergenic 40.0%
ATGAACACAATAGATGGGAC+AGG - chr7.3:12912679-12912698 MS.gene09874:intron 40.0%
CTCATTACAGCAAAATGGAG+AGG + chr7.3:12911489-12911508 None:intergenic 40.0%
CTGCAGTTGTAGGATATGTT+TGG - chr7.3:12912904-12912923 MS.gene09874:CDS 40.0%
CTTACATACATGTGGGCATT+GGG - chr7.3:12913083-12913102 MS.gene09874:CDS 40.0%
GTATGGCTAGCAAAATCTCT+TGG + chr7.3:12912162-12912181 None:intergenic 40.0%
GTCCTCTCATTACAGCAAAA+TGG + chr7.3:12911494-12911513 None:intergenic 40.0%
TCAGTCAGTAATTAGTCCAC+CGG - chr7.3:12912809-12912828 MS.gene09874:intron 40.0%
TCTTGTGTAGGATCATTGTG+TGG + chr7.3:12912558-12912577 None:intergenic 40.0%
TGAACACAATAGATGGGACA+GGG - chr7.3:12912680-12912699 MS.gene09874:intron 40.0%
TGCCGGAAACAGAAACTATT+CGG - chr7.3:12911547-12911566 MS.gene09874:intron 40.0%
TTAGATATTTGTGGAGGACG+AGG + chr7.3:12913249-12913268 None:intergenic 40.0%
TTCACATCAGCTGCTAAGTT+GGG + chr7.3:12911348-12911367 None:intergenic 40.0%
! ATGGCTGAGATTGATGATCA+TGG - chr7.3:12911573-12911592 MS.gene09874:intron 40.0%
! CTAGAATTGTGTTCTGGGTT+AGG - chr7.3:12913210-12913229 MS.gene09874:CDS 40.0%
! GATTGGACTAGAGTTACTTG+AGG + chr7.3:12912420-12912439 None:intergenic 40.0%
! GGAGGATCAATGTTTTGTGA+TGG + chr7.3:12912369-12912388 None:intergenic 40.0%
! TGCATCACTATGTGTGCTTT+TGG - chr7.3:12912974-12912993 MS.gene09874:CDS 40.0%
! TGTAATGGGGTTTCAGAGAA+TGG + chr7.3:12911270-12911289 None:intergenic 40.0%
! TTCATCTAGCTTCGGCAAAA+GGG - chr7.3:12911388-12911407 MS.gene09874:intron 40.0%
!! CTCCATTTTGCTGTAATGAG+AGG - chr7.3:12911489-12911508 MS.gene09874:intron 40.0%
!! CTCCTCTCATTGATTCAACA+AGG + chr7.3:12911650-12911669 None:intergenic 40.0%
!! GTTTATAGTGTGGGTTTTGG+CGG - chr7.3:12913028-12913047 MS.gene09874:CDS 40.0%
!! TCATTAGCTATGCTTGGTGT+TGG + chr7.3:12912654-12912673 None:intergenic 40.0%
!!! GATGGTTGTTGATTTTGTGG+AGG + chr7.3:12912351-12912370 None:intergenic 40.0%
AGGACGCATAGGAACCATTA+AGG - chr7.3:12911509-12911528 MS.gene09874:intron 45.0%
CAGTCAGTAATTAGTCCACC+GGG - chr7.3:12912810-12912829 MS.gene09874:intron 45.0%
GAAAATCCTCTGCCACACTA+TGG - chr7.3:12913385-12913404 MS.gene09874:CDS 45.0%
GAGGATGACTAATCGGTGAT+TGG + chr7.3:12912437-12912456 None:intergenic 45.0%
GATGATTGTTGTGGTTGTGG+AGG + chr7.3:12912387-12912406 None:intergenic 45.0%
GATGGTGATTGTGGATGTTG+AGG + chr7.3:12912534-12912553 None:intergenic 45.0%
GCCGGAAACAGAAACTATTC+GGG - chr7.3:12911548-12911567 MS.gene09874:intron 45.0%
GCTTACATACATGTGGGCAT+TGG - chr7.3:12913082-12913101 MS.gene09874:CDS 45.0%
GGTTACGCTTGTCCTGATTA+TGG - chr7.3:12912864-12912883 MS.gene09874:CDS 45.0%
GTAGGATCATTGTGTGGTGA+TGG + chr7.3:12912552-12912571 None:intergenic 45.0%
GTTAGTGAGGGATTGTGAGA+TGG + chr7.3:12912504-12912523 None:intergenic 45.0%
GTTCACATCAGCTGCTAAGT+TGG + chr7.3:12911349-12911368 None:intergenic 45.0%
TCGCGAATCAAGCAAGTTTC+TGG + chr7.3:12911450-12911469 None:intergenic 45.0%
TTGCCGAAGCTAGATGAAGA+GGG + chr7.3:12911386-12911405 None:intergenic 45.0%
TTGTGGATGTTGAGGCTCAT+TGG + chr7.3:12912526-12912545 None:intergenic 45.0%
TTTGCCGAAGCTAGATGAAG+AGG + chr7.3:12911387-12911406 None:intergenic 45.0%
! CTTCATCTAGCTTCGGCAAA+AGG - chr7.3:12911387-12911406 MS.gene09874:intron 45.0%
! GGTGGTTGTGAAGGACTTTT+GGG + chr7.3:12912483-12912502 None:intergenic 45.0%
! GTGGCAGAGGATTTTCAGAA+AGG + chr7.3:12913381-12913400 None:intergenic 45.0%
! TGAGGCTCATTGGTTAGTGA+GGG + chr7.3:12912516-12912535 None:intergenic 45.0%
! TGGTGGTTGTGAAGGACTTT+TGG + chr7.3:12912484-12912503 None:intergenic 45.0%
! TTGAGGCTCATTGGTTAGTG+AGG + chr7.3:12912517-12912536 None:intergenic 45.0%
! TTGCCCTCTTCATCTAGCTT+CGG - chr7.3:12911380-12911399 MS.gene09874:intron 45.0%
! TTGTGAGATGGTGGTTGTGA+AGG + chr7.3:12912492-12912511 None:intergenic 45.0%
! TTGTGTTCTGGGTTAGGTCT+AGG - chr7.3:12913216-12913235 MS.gene09874:CDS 45.0%
!! CTATGCTTGGTGTTGGTGAA+GGG + chr7.3:12912647-12912666 None:intergenic 45.0%
!! GGAGTTGATAAGTGCAATGC+CGG - chr7.3:12911530-12911549 MS.gene09874:intron 45.0%
!! TTGTGTGGTGATGGTGATTG+TGG + chr7.3:12912543-12912562 None:intergenic 45.0%
!!! GTGCTTTTGGTTCTCGTAAG+TGG - chr7.3:12912987-12913006 MS.gene09874:CDS 45.0%
AGTGAGGGATTGTGAGATGG+TGG + chr7.3:12912501-12912520 None:intergenic 50.0%
GAAGCAGGAACTGCAGTTGT+AGG - chr7.3:12912894-12912913 MS.gene09874:CDS 50.0%
GCAGCTGATGTGAACTCAGA+AGG - chr7.3:12911354-12911373 MS.gene09874:CDS 50.0%
GCTGTAATGAGAGGACGCAT+AGG - chr7.3:12911498-12911517 MS.gene09874:intron 50.0%
GTGGTGGTTGTAGAGGATTG+AGG + chr7.3:12912602-12912621 None:intergenic 50.0%
TCAGTAATTAGTCCACCGGG+CGG - chr7.3:12912813-12912832 MS.gene09874:intron 50.0%
TCCAAGTGCTTCCCATAGTG+TGG + chr7.3:12913400-12913419 None:intergenic 50.0%
! GGTTGTGAAGGACTTTTGGG+TGG + chr7.3:12912480-12912499 None:intergenic 50.0%
! TCACTTGGTGAGAATGGTGG+TGG + chr7.3:12912621-12912640 None:intergenic 50.0%
! TCGTCACTTGGTGAGAATGG+TGG + chr7.3:12912624-12912643 None:intergenic 50.0%
!! AATGGTGGTGGTGGTTGTAG+AGG + chr7.3:12912609-12912628 None:intergenic 50.0%
!! GAAGGACTTTTGGGTGGTGA+AGG + chr7.3:12912474-12912493 None:intergenic 50.0%
!! GCTATGCTTGGTGTTGGTGA+AGG + chr7.3:12912648-12912667 None:intergenic 50.0%
GGTTGTAGAGGATTGAGGCC+TGG + chr7.3:12912597-12912616 None:intergenic 55.0%
TCTTCTTCCCAAACACCGCC+CGG + chr7.3:12912831-12912850 None:intergenic 55.0%
TGCTTCCCATAGTGTGGCAG+AGG + chr7.3:12913394-12913413 None:intergenic 55.0%
! GGGTCGTCACTTGGTGAGAA+TGG + chr7.3:12912627-12912646 None:intergenic 55.0%
! GTTGGTGAAGGGTCGTCACT+TGG + chr7.3:12912636-12912655 None:intergenic 55.0%
!! CTTGGTGAGAATGGTGGTGG+TGG + chr7.3:12912618-12912637 None:intergenic 55.0%
!! GCCACACTATGGGAAGCACT+TGG - chr7.3:12913396-12913415 MS.gene09874:CDS 55.0%
TAGTCCACCGGGCGGTGTTT+GGG - chr7.3:12912821-12912840 MS.gene09874:intron 60.0%
TTAGTCCACCGGGCGGTGTT+TGG - chr7.3:12912820-12912839 MS.gene09874:intron 60.0%
! TCTGGGTTAGGTCTAGGCGC+AGG - chr7.3:12913222-12913241 MS.gene09874:CDS 60.0%
TCTTCCCAAACACCGCCCGG+TGG + chr7.3:12912828-12912847 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 12911168 12913438 12911168 ID=MS.gene09874
chr7.3 mRNA 12911168 12913438 12911168 ID=MS.gene09874.t1;Parent=MS.gene09874
chr7.3 exon 12912857 12913438 12912857 ID=MS.gene09874.t1.exon1;Parent=MS.gene09874.t1
chr7.3 CDS 12912857 12913438 12912857 ID=cds.MS.gene09874.t1;Parent=MS.gene09874.t1
chr7.3 exon 12911605 12912543 12911605 ID=MS.gene09874.t1.exon2;Parent=MS.gene09874.t1
chr7.3 CDS 12911605 12912543 12911605 ID=cds.MS.gene09874.t1;Parent=MS.gene09874.t1
chr7.3 exon 12911322 12911396 12911322 ID=MS.gene09874.t1.exon3;Parent=MS.gene09874.t1
chr7.3 CDS 12911322 12911396 12911322 ID=cds.MS.gene09874.t1;Parent=MS.gene09874.t1
chr7.3 exon 12911168 12911233 12911168 ID=MS.gene09874.t1.exon4;Parent=MS.gene09874.t1
chr7.3 CDS 12911168 12911233 12911168 ID=cds.MS.gene09874.t1;Parent=MS.gene09874.t1
Gene Sequence

>MS.gene09874

ATGAGAAACCTCTATGGTGCATCATTAAAAGGATGTGTGATTAGCTTAAAAGCACTTATCCAAAAAGACCCTCTAATTCTAAGTAGAGTTTCACTCTCTCCATTCTCTGAAACCCCATTACACATAGCTTCTTTACTTGGACATTTAGAATTAAGTCAAATTCTTCTTGACATAAATCCCAACTTAGCAGCTGATGTGAACTCAGAAGGACATTGCCCTCTTCATCTAGCTTCGGCAAAAGGGCACATTGAAATAGTGAAAGCTTTGTTGTCGACAGATCCAGAAACTTGCTTGATTCGCGACAAAGATGACAAACTTCCTCTCCATTTTGCTGTAATGAGAGGACGCATAGGAACCATTAAGGAGTTGATAAGTGCAATGCCGGAAACAGAAACTATTCGGGTGATGGCTGAGATTGATGATCATGGTTCCATTTTGCACTTGTGTGTTTTCTATAATCATCTAGAGGCATTGAAAATCCTTGTTGAATCAATGAGAGGAGACATTGATCAATTTTTGTCTTCTAAAGACAAAGAGGGTAACAATATTTTGGATTTAGCTATCAAACGAGGACAAATTAAGGTAATGTTTTTTCAACAACAGATAAATTTAGGATTTGCTCACTTTCTAAAAATATTTTCAATTTACAATTTAAAAATCTGAATTCATTTTAAACTGCTAACAATAAGATGAAAGTCTATTGTGGCAGATAGAAGGTGAAAGACTTTTTAAGTAGAATACATTTTTAAAAATAATGAAAACAATGTTTTCACATTTTCAAAAATTATAAAAGAAAACTACAAGGAAAATACTGAATCTTGTTTTGAGCCCTTGAAACCTTTTCATATGAATAATTGGATTAAACATTAGTAACAACTTTTATATAACTTTGCAGATCATAAAGTACTTGCTCTCACTATCTGAAATGAGTGAGACAATAAATACCTCCAAAACAGAAGCTTTAAGAGCTTTATATATGTTGGAGCATAGTCCAAGAGATTTTGCTAGCCATACAATTCAACACATTTTGACTGAAGAAAGAGCTCAAACATCTACAAATATAGTTATTGCTCAACAAGATCATGTTAACTCACCAAGGAATGATCCTCAACAGTTACTAGAACAACATTCACAAATCAATGGTCATGAACAATCACAAACTTCATCACCAAACAATGATCCTCCACAAAATCAACAACCATCACAAAACATTGATCCTCCACAACCACAACAATCATCGATAAATGATCCTCAAGTAACTCTAGTCCAATCACCGATTAGTCATCCTCTACAACTAACAAATCCTTCACCACCCAAAAGTCCTTCACAACCACCATCTCACAATCCCTCACTAACCAATGAGCCTCAACATCCACAATCACCATCACCACACAATGATCCTACACAAGAAATTACACATTCATCACCAGGCCTCAATCCTCTACAACCACCACCACCATTCTCACCAAGTGACGACCCTTCACCAACACCAAGCATAGCTAATGAACAACATGAACACAATAGATGGGACAGGGTTGAGAGTTTCTGCAACAAATACCTAATAAACCAAGGTTATTGGATAGATAAAAAGACAAGAGAACAATTAATGGTAGCAGCAACTGTGATTGCAACTATGACTTTTCAGTCAGTAATTAGTCCACCGGGCGGTGTTTGGGAAGAAGATACAACAAAAGGTGGTTACGCTTGTCCTGATTATGGTTTTTGTGAAGCAGGAACTGCAGTTGTAGGATATGTTTGGTCACCAGATTATCTTAAATTCATTTTCTTCAACTCTGCTTCTTTCTTTGCATCACTATGTGTGCTTTTGGTTCTCGTAAGTGGATTTCCTCTTCATAATAAGTTTATAGTGTGGGTTTTGGCGGTTTTGATGATAGTTGCAATCACATGTATGTTGCTTACATACATGTGGGCATTGGGATTAATTAGTCCTAATCACATTTTCTATAGAATTCGTGATTTAGGTTATATCTTGGTTGGAATTTGGTCTTTCTTACTTTTTGTTGTTTGTTTGATTCAAATAGCTAGAATTGTGTTCTGGGTTAGGTCTAGGCGCAGGTCCTCGTCCTCCACAAATATCTAAGTTAAAAGTAGAAAAGGTTGCCTACATGACTCTCTTTCATGAACCAAAAACTACATTTGCATATGCCCAACTCCTATCAATTTAAGCTTCATGTGTTGATTTAGGATATCCTTTCTGAAAATCCTCTGCCACACTATGGGAAGCACTTGGAGAAGTGCGATGATTCATAA

Protein sequence

>MS.gene09874.t1

MRNLYGASLKGCVISLKALIQKDPLILSRVSLSPFSETPLHIASLLGHLELSQILLDINPNLAADVNSEGHCPLHLASAKGHIEIVKALLSTDPETCLIRDKDDKLPLHFAVMRGRIGTIKELISAMPETETIRVMAEIDDHGSILHLCVFYNHLEALKILVESMRGDIDQFLSSKDKEGNNILDLAIKRGQIKIIKYLLSLSEMSETINTSKTEALRALYMLEHSPRDFASHTIQHILTEERAQTSTNIVIAQQDHVNSPRNDPQQLLEQHSQINGHEQSQTSSPNNDPPQNQQPSQNIDPPQPQQSSINDPQVTLVQSPISHPLQLTNPSPPKSPSQPPSHNPSLTNEPQHPQSPSPHNDPTQEITHSSPGLNPLQPPPPFSPSDDPSPTPSIANEQHEHNRWDRVESFCNKYLINQGYWIDKKTREQLMVAATVIATMTFQSVISPPGGVWEEDTTKGGYACPDYGFCEAGTAVVGYVWSPDYLKFIFFNSASFFASLCVLLVLLELCSGLGLGAGPRPPQISKLKVEKDILSENPLPHYGKHLEKCDDS