Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09875.t1 | XP_016207545.1 | 46.8 | 474 | 133 | 5 | 2 | 359 | 4 | 474 | 7.40E-82 | 314.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09875.t1 | A0A444YMJ2 | 46.8 | 474 | 133 | 5 | 2 | 359 | 4 | 474 | 5.3e-82 | 314.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene013681 | MS.gene09875 | PPI |
MS.gene81951 | MS.gene09875 | PPI |
MS.gene02491 | MS.gene09875 | PPI |
MS.gene02648 | MS.gene09875 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09875.t1 | MTR_7g099550 | 83.193 | 119 | 14 | 1 | 57 | 175 | 127 | 239 | 2.17e-63 | 202 |
MS.gene09875.t1 | MTR_7g099570 | 52.703 | 222 | 96 | 3 | 8 | 220 | 1 | 222 | 3.57e-63 | 212 |
MS.gene09875.t1 | MTR_7g099570 | 62.044 | 137 | 52 | 0 | 220 | 356 | 453 | 589 | 9.80e-58 | 197 |
MS.gene09875.t1 | MTR_7g099580 | 42.756 | 283 | 108 | 8 | 8 | 238 | 4 | 284 | 2.28e-62 | 203 |
MS.gene09875.t1 | MTR_1g069110 | 59.722 | 144 | 57 | 1 | 219 | 361 | 297 | 440 | 1.48e-56 | 191 |
MS.gene09875.t1 | MTR_1g069110 | 40.359 | 223 | 89 | 3 | 5 | 220 | 7 | 192 | 3.45e-45 | 161 |
MS.gene09875.t1 | MTR_7g099560 | 45.503 | 189 | 64 | 5 | 208 | 360 | 1 | 186 | 9.43e-36 | 130 |
MS.gene09875.t1 | MTR_7g099600 | 60.920 | 87 | 34 | 0 | 260 | 346 | 1 | 87 | 9.32e-29 | 107 |
MS.gene09875.t1 | MTR_8g019280 | 39.706 | 136 | 76 | 1 | 219 | 354 | 6 | 135 | 2.41e-21 | 89.7 |
MS.gene09875.t1 | MTR_8g019290 | 38.971 | 136 | 77 | 1 | 219 | 354 | 36 | 165 | 4.25e-21 | 89.7 |
MS.gene09875.t1 | MTR_8g019260 | 37.594 | 133 | 82 | 1 | 219 | 350 | 36 | 168 | 2.96e-20 | 87.4 |
MS.gene09875.t1 | MTR_8g019110 | 37.594 | 133 | 82 | 1 | 219 | 350 | 36 | 168 | 2.96e-20 | 87.4 |
MS.gene09875.t1 | MTR_2g101320 | 31.461 | 178 | 118 | 3 | 44 | 220 | 137 | 311 | 8.78e-20 | 91.3 |
MS.gene09875.t1 | MTR_4g062100 | 30.601 | 183 | 116 | 4 | 39 | 212 | 133 | 313 | 9.03e-19 | 88.2 |
MS.gene09875.t1 | MTR_4g062100 | 29.282 | 181 | 117 | 3 | 45 | 224 | 105 | 275 | 1.40e-16 | 81.3 |
MS.gene09875.t1 | MTR_8g073260 | 27.193 | 228 | 153 | 4 | 7 | 221 | 2 | 229 | 1.27e-18 | 87.0 |
MS.gene09875.t1 | MTR_2g096190 | 30.851 | 188 | 117 | 5 | 39 | 224 | 129 | 305 | 2.26e-18 | 86.7 |
MS.gene09875.t1 | MTR_2g096190 | 29.586 | 169 | 115 | 2 | 45 | 212 | 101 | 266 | 1.88e-17 | 84.0 |
MS.gene09875.t1 | MTR_7g117620 | 32.258 | 186 | 119 | 3 | 45 | 229 | 116 | 295 | 3.25e-18 | 86.3 |
MS.gene09875.t1 | MTR_0470s0010 | 36.620 | 142 | 76 | 5 | 219 | 350 | 38 | 175 | 4.04e-18 | 81.6 |
MS.gene09875.t1 | MTR_8g019020 | 36.620 | 142 | 76 | 5 | 219 | 350 | 38 | 175 | 4.04e-18 | 81.6 |
MS.gene09875.t1 | MTR_1g115575 | 28.708 | 209 | 139 | 4 | 15 | 218 | 134 | 337 | 6.17e-18 | 85.5 |
MS.gene09875.t1 | MTR_2g101310 | 32.022 | 178 | 117 | 3 | 44 | 220 | 137 | 311 | 6.44e-18 | 85.5 |
MS.gene09875.t1 | MTR_7g087540 | 34.028 | 144 | 73 | 3 | 219 | 359 | 56 | 180 | 8.98e-18 | 80.9 |
MS.gene09875.t1 | MTR_2g101310 | 32.022 | 178 | 117 | 3 | 44 | 220 | 137 | 311 | 2.75e-17 | 83.6 |
MS.gene09875.t1 | MTR_7g100390 | 31.579 | 209 | 130 | 6 | 15 | 219 | 87 | 286 | 5.12e-17 | 82.8 |
MS.gene09875.t1 | MTR_7g100390 | 26.636 | 214 | 149 | 4 | 1 | 210 | 38 | 247 | 1.59e-15 | 78.2 |
MS.gene09875.t1 | MTR_8g072510 | 27.500 | 200 | 135 | 3 | 32 | 221 | 29 | 228 | 1.26e-16 | 81.3 |
MS.gene09875.t1 | MTR_8g467780 | 30.612 | 196 | 120 | 4 | 30 | 215 | 28 | 217 | 1.48e-16 | 80.9 |
MS.gene09875.t1 | MTR_7g451420 | 28.571 | 224 | 144 | 5 | 11 | 221 | 7 | 227 | 2.05e-16 | 79.3 |
MS.gene09875.t1 | MTR_7g055630 | 35.252 | 139 | 82 | 4 | 219 | 350 | 37 | 174 | 2.54e-16 | 76.6 |
MS.gene09875.t1 | MTR_7g100430 | 30.986 | 213 | 135 | 6 | 15 | 222 | 126 | 331 | 6.17e-16 | 79.3 |
MS.gene09875.t1 | MTR_8g068990 | 28.415 | 183 | 110 | 3 | 32 | 205 | 31 | 201 | 6.53e-16 | 79.0 |
MS.gene09875.t1 | MTR_8g066670 | 25.000 | 220 | 146 | 4 | 9 | 218 | 1080 | 1290 | 8.93e-16 | 79.3 |
MS.gene09875.t1 | MTR_7g021090 | 27.053 | 207 | 135 | 5 | 23 | 216 | 16 | 219 | 1.39e-15 | 77.8 |
MS.gene09875.t1 | MTR_3g105650 | 26.374 | 182 | 121 | 3 | 23 | 191 | 12 | 193 | 8.69e-15 | 75.5 |
MS.gene09875.t1 | MTR_5g085480 | 28.922 | 204 | 141 | 3 | 16 | 216 | 54 | 256 | 1.70e-14 | 75.1 |
MS.gene09875.t1 | MTR_3g016210 | 26.374 | 182 | 124 | 3 | 32 | 203 | 29 | 210 | 1.71e-14 | 74.7 |
MS.gene09875.t1 | MTR_7g087560 | 35.915 | 142 | 54 | 6 | 219 | 358 | 56 | 162 | 1.77e-14 | 71.2 |
MS.gene09875.t1 | MTR_5g085480 | 28.922 | 204 | 141 | 3 | 16 | 216 | 214 | 416 | 3.08e-14 | 74.3 |
MS.gene09875.t1 | MTR_8g039620 | 26.339 | 224 | 152 | 4 | 11 | 221 | 9 | 232 | 3.48e-14 | 73.9 |
MS.gene09875.t1 | MTR_1g059930 | 27.500 | 200 | 135 | 3 | 32 | 221 | 31 | 230 | 4.38e-14 | 73.6 |
MS.gene09875.t1 | MTR_8g069880 | 25.781 | 256 | 163 | 9 | 11 | 251 | 5 | 248 | 4.92e-14 | 73.6 |
MS.gene09875.t1 | MTR_2g033050 | 28.708 | 209 | 136 | 7 | 16 | 216 | 169 | 372 | 3.23e-13 | 70.9 |
MS.gene09875.t1 | MTR_0470s0020 | 29.560 | 159 | 89 | 4 | 220 | 355 | 67 | 225 | 5.18e-13 | 68.6 |
MS.gene09875.t1 | MTR_8g019050 | 29.560 | 159 | 89 | 4 | 220 | 355 | 67 | 225 | 5.18e-13 | 68.6 |
MS.gene09875.t1 | MTR_1g032100 | 29.885 | 174 | 112 | 4 | 48 | 218 | 94 | 260 | 2.03e-12 | 68.6 |
MS.gene09875.t1 | MTR_8g062410 | 26.904 | 197 | 134 | 3 | 32 | 218 | 29 | 225 | 2.70e-12 | 68.2 |
MS.gene09875.t1 | MTR_8g019450 | 30.675 | 163 | 98 | 6 | 210 | 365 | 85 | 239 | 2.86e-12 | 66.2 |
MS.gene09875.t1 | MTR_0514s0010 | 28.736 | 174 | 96 | 5 | 220 | 365 | 69 | 242 | 9.46e-12 | 64.7 |
MS.gene09875.t1 | MTR_8g018980 | 28.736 | 174 | 96 | 5 | 220 | 365 | 67 | 240 | 3.37e-11 | 63.2 |
MS.gene09875.t1 | MTR_8g019380 | 29.221 | 154 | 90 | 5 | 220 | 355 | 68 | 220 | 3.56e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09875.t1 | AT5G54620 | 30.882 | 204 | 128 | 4 | 14 | 204 | 3 | 206 | 6.04e-20 | 90.9 |
MS.gene09875.t1 | AT2G31820 | 33.663 | 202 | 126 | 5 | 7 | 205 | 186 | 382 | 1.25e-19 | 90.9 |
MS.gene09875.t1 | AT4G10720 | 31.319 | 182 | 115 | 3 | 32 | 203 | 24 | 205 | 3.31e-18 | 85.9 |
MS.gene09875.t1 | AT4G10720 | 31.319 | 182 | 115 | 3 | 32 | 203 | 24 | 205 | 4.26e-18 | 85.5 |
MS.gene09875.t1 | AT5G60070 | 26.728 | 217 | 142 | 5 | 15 | 222 | 76 | 284 | 8.62e-18 | 85.1 |
MS.gene09875.t1 | AT1G05640 | 31.004 | 229 | 141 | 8 | 1 | 224 | 142 | 358 | 1.14e-17 | 84.7 |
MS.gene09875.t1 | AT5G15500 | 29.327 | 208 | 130 | 4 | 14 | 204 | 4 | 211 | 3.28e-17 | 83.2 |
MS.gene09875.t1 | AT3G12360 | 29.612 | 206 | 133 | 5 | 15 | 215 | 120 | 318 | 6.58e-17 | 82.4 |
MS.gene09875.t1 | AT3G12360 | 29.612 | 206 | 133 | 5 | 15 | 215 | 132 | 330 | 7.46e-17 | 82.4 |
MS.gene09875.t1 | AT5G50140 | 29.016 | 193 | 118 | 5 | 44 | 220 | 26 | 215 | 7.88e-17 | 82.0 |
MS.gene09875.t1 | AT1G14480 | 29.353 | 201 | 129 | 4 | 16 | 203 | 5 | 205 | 9.19e-17 | 81.6 |
MS.gene09875.t1 | AT1G07710 | 30.899 | 178 | 80 | 2 | 47 | 224 | 137 | 271 | 1.43e-16 | 81.3 |
MS.gene09875.t1 | AT1G07710 | 30.899 | 178 | 80 | 2 | 47 | 224 | 137 | 271 | 1.43e-16 | 81.3 |
MS.gene09875.t1 | AT1G14500 | 28.877 | 187 | 123 | 2 | 27 | 203 | 19 | 205 | 2.53e-16 | 80.5 |
MS.gene09875.t1 | AT3G09550 | 28.365 | 208 | 139 | 4 | 16 | 218 | 154 | 356 | 3.96e-16 | 80.1 |
MS.gene09875.t1 | AT3G09550 | 28.365 | 208 | 139 | 4 | 16 | 218 | 147 | 349 | 4.11e-16 | 80.1 |
MS.gene09875.t1 | AT3G09550 | 28.365 | 208 | 139 | 4 | 16 | 218 | 147 | 349 | 4.11e-16 | 80.1 |
MS.gene09875.t1 | AT5G54700 | 22.930 | 314 | 165 | 10 | 45 | 315 | 37 | 316 | 7.71e-16 | 79.0 |
MS.gene09875.t1 | AT1G14480 | 23.544 | 395 | 219 | 14 | 16 | 351 | 5 | 375 | 9.65e-16 | 78.2 |
MS.gene09875.t1 | AT5G54610 | 26.984 | 189 | 130 | 3 | 24 | 204 | 16 | 204 | 1.20e-15 | 78.2 |
MS.gene09875.t1 | AT3G13950 | 36.170 | 141 | 84 | 3 | 220 | 356 | 53 | 191 | 4.19e-15 | 73.9 |
MS.gene09875.t1 | AT5G51160 | 29.870 | 154 | 102 | 4 | 74 | 221 | 42 | 195 | 1.85e-14 | 74.7 |
MS.gene09875.t1 | AT5G02620 | 28.042 | 189 | 126 | 4 | 35 | 221 | 86 | 266 | 2.98e-14 | 74.3 |
MS.gene09875.t1 | AT5G02620 | 26.519 | 181 | 124 | 5 | 45 | 222 | 56 | 230 | 8.17e-12 | 67.0 |
MS.gene09875.t1 | AT5G02620 | 32.597 | 181 | 111 | 6 | 15 | 190 | 94 | 268 | 1.38e-11 | 66.2 |
MS.gene09875.t1 | AT5G02620 | 28.042 | 189 | 126 | 4 | 35 | 221 | 86 | 266 | 2.98e-14 | 74.3 |
MS.gene09875.t1 | AT5G02620 | 26.519 | 181 | 124 | 5 | 45 | 222 | 56 | 230 | 8.17e-12 | 67.0 |
MS.gene09875.t1 | AT5G02620 | 32.597 | 181 | 111 | 6 | 15 | 190 | 94 | 268 | 1.38e-11 | 66.2 |
MS.gene09875.t1 | AT5G02620 | 28.042 | 189 | 126 | 4 | 35 | 221 | 86 | 266 | 2.98e-14 | 74.3 |
MS.gene09875.t1 | AT5G02620 | 26.519 | 181 | 124 | 5 | 45 | 222 | 56 | 230 | 8.17e-12 | 67.0 |
MS.gene09875.t1 | AT5G02620 | 32.597 | 181 | 111 | 6 | 15 | 190 | 94 | 268 | 1.38e-11 | 66.2 |
MS.gene09875.t1 | AT4G13266 | 32.394 | 142 | 89 | 4 | 220 | 356 | 55 | 194 | 5.58e-14 | 70.9 |
MS.gene09875.t1 | AT5G02620 | 28.916 | 166 | 109 | 3 | 35 | 199 | 86 | 243 | 2.96e-13 | 71.2 |
MS.gene09875.t1 | AT5G02620 | 25.967 | 181 | 125 | 5 | 45 | 222 | 56 | 230 | 7.36e-12 | 67.0 |
MS.gene09875.t1 | AT5G02620 | 28.916 | 166 | 109 | 3 | 35 | 199 | 86 | 243 | 2.96e-13 | 71.2 |
MS.gene09875.t1 | AT5G02620 | 25.967 | 181 | 125 | 5 | 45 | 222 | 56 | 230 | 7.36e-12 | 67.0 |
MS.gene09875.t1 | AT2G01680 | 27.746 | 173 | 117 | 4 | 48 | 218 | 97 | 263 | 5.61e-12 | 67.4 |
MS.gene09875.t1 | AT4G03500 | 28.804 | 184 | 126 | 4 | 11 | 191 | 191 | 372 | 2.03e-11 | 65.9 |
MS.gene09875.t1 | AT4G03500 | 28.804 | 184 | 126 | 4 | 11 | 191 | 191 | 372 | 2.03e-11 | 65.9 |
MS.gene09875.t1 | AT4G03500 | 28.804 | 184 | 126 | 4 | 11 | 191 | 214 | 395 | 2.25e-11 | 65.9 |
MS.gene09875.t1 | AT4G03440 | 27.273 | 209 | 142 | 3 | 11 | 209 | 264 | 472 | 5.01e-11 | 64.7 |
MS.gene09875.t1 | AT4G03440 | 27.273 | 209 | 142 | 3 | 11 | 209 | 264 | 472 | 5.01e-11 | 64.7 |
MS.gene09875.t1 | AT4G03440 | 27.273 | 209 | 142 | 3 | 11 | 209 | 271 | 479 | 5.60e-11 | 64.7 |
Find 82 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCGGGAATCAAACAAATATT+TGG | 0.135936 | 7.3:+12917623 | None:intergenic |
TGGCTTTCCACTTAAGAATA+AGG | 0.252332 | 7.3:-12914872 | MS.gene09875:CDS |
ATATTTATTATGATGCTTAT+AGG | 0.255392 | 7.3:-12914756 | MS.gene09875:CDS |
ACCGTATCATCCTCAAAATT+TGG | 0.256367 | 7.3:+12917914 | None:intergenic |
GTTTGCTGCTGTTCTCATTT+GGG | 0.259376 | 7.3:+12915369 | None:intergenic |
TGTTTGCTGCTGTTCTCATT+TGG | 0.268583 | 7.3:+12915368 | None:intergenic |
CTCTATGAAGCAATAATAAA+TGG | 0.310501 | 7.3:-12917884 | MS.gene09875:CDS |
TATTATGATGCTTATAGGTT+AGG | 0.311967 | 7.3:-12914751 | MS.gene09875:CDS |
CCATGTTCATTTCAAAAGAT+TGG | 0.329379 | 7.3:-12917521 | MS.gene09875:CDS |
TATAGGTTAGGGTTTCTATT+AGG | 0.335518 | 7.3:-12914739 | MS.gene09875:CDS |
AAACTTTCATTCTCTCCATT+TGG | 0.344078 | 7.3:-12917818 | MS.gene09875:CDS |
TTTAGAAATAAGCTTATGTT+TGG | 0.344450 | 7.3:+12914629 | None:intergenic |
TAAACCCACCAGGTGGAGTT+TGG | 0.353890 | 7.3:-12915059 | MS.gene09875:CDS |
TTACACATAGCCTCTTTGTT+TGG | 0.359073 | 7.3:-12917785 | MS.gene09875:CDS |
TTGCTTTGATTCAAATTGTA+AGG | 0.364537 | 7.3:-12914687 | MS.gene09875:CDS |
GCATACACTTGCACTACTTA+TGG | 0.367151 | 7.3:-12915015 | MS.gene09875:CDS |
TGACAAACTTCCTATACATT+TGG | 0.387355 | 7.3:-12917594 | MS.gene09875:CDS |
CTTACTTATATGTGGGCCAT+TGG | 0.389989 | 7.3:-12914796 | MS.gene09875:CDS |
CCTATACATTTGGCCGTGTC+AGG | 0.392164 | 7.3:-12917584 | MS.gene09875:CDS |
ATTATGATGCTTATAGGTTA+GGG | 0.396447 | 7.3:-12914750 | MS.gene09875:CDS |
ATTATAACCTTATTCTTAAG+TGG | 0.396616 | 7.3:+12914865 | None:intergenic |
TTTCAAAAGATTGGTGATGA+TGG | 0.401576 | 7.3:-12917512 | MS.gene09875:CDS |
TTATGTTGCTTACTTATATG+TGG | 0.403932 | 7.3:-12914804 | MS.gene09875:CDS |
AGGGTAACACGATTCTTCAT+TGG | 0.409958 | 7.3:-12917385 | MS.gene09875:CDS |
AGAGAATGAAAGTTTGCTTA+AGG | 0.410698 | 7.3:+12917826 | None:intergenic |
GAAAGTTTGCTTAAGGTAAG+AGG | 0.412128 | 7.3:+12917833 | None:intergenic |
CCTGACACGGCCAAATGTAT+AGG | 0.414312 | 7.3:+12917584 | None:intergenic |
CTTCATTTGGCTTCAGCTGA+AGG | 0.425245 | 7.3:-12917683 | MS.gene09875:CDS |
AGGTCGTTACCCTCTTCATT+TGG | 0.431625 | 7.3:-12917696 | MS.gene09875:CDS |
ACTTATGGTATTTGCAAAGC+TGG | 0.447230 | 7.3:-12915000 | MS.gene09875:CDS |
GGATTGCACTATGCATTTCA+AGG | 0.449153 | 7.3:+12917448 | None:intergenic |
GTTTCTATTAGGTGGTGCGT+GGG | 0.452537 | 7.3:-12914728 | MS.gene09875:CDS |
GGGTAACACGATTCTTCATT+GGG | 0.460011 | 7.3:-12917384 | MS.gene09875:CDS |
AGGAAGTTTGTCATCATTGT+CGG | 0.460716 | 7.3:+12917604 | None:intergenic |
TCCACTTCACTAGCTAAACT+TGG | 0.461505 | 7.3:+12917725 | None:intergenic |
TATGTTGCTTACTTATATGT+GGG | 0.474110 | 7.3:-12914803 | MS.gene09875:CDS |
GTTGTGTTGATTCTTGTTTG+TGG | 0.477030 | 7.3:-12914892 | MS.gene09875:CDS |
AGTTAACCTCAAGCAAATTC+AGG | 0.477234 | 7.3:-12917360 | MS.gene09875:intron |
AACACAAAGTGAAGCAAAGA+AGG | 0.480222 | 7.3:+12914912 | None:intergenic |
CTGCAGTTGTTGGATATGAT+TGG | 0.483697 | 7.3:-12914975 | MS.gene09875:CDS |
GGAAGTTTGTCATCATTGTC+GGG | 0.484685 | 7.3:+12917605 | None:intergenic |
TTATATGTGGGCCATTGGAT+TGG | 0.486598 | 7.3:-12914791 | MS.gene09875:CDS |
TGTAATGGTGTTTCACCAAA+TGG | 0.488071 | 7.3:+12917803 | None:intergenic |
TCAACTCCTCAACAACCTCC+AGG | 0.493021 | 7.3:+12917555 | None:intergenic |
TTTGCTGCTGTTCTCATTTG+GGG | 0.499629 | 7.3:+12915370 | None:intergenic |
AGGTTAGGGTTTCTATTAGG+TGG | 0.500162 | 7.3:-12914736 | MS.gene09875:CDS |
GGCCGTGTCAGGAGGACACC+TGG | 0.505191 | 7.3:-12917573 | MS.gene09875:CDS |
GCCATTGGATTGGTTACACC+TGG | 0.507017 | 7.3:-12914781 | MS.gene09875:CDS |
CTTGCCAAACTCCACCTGGT+GGG | 0.512301 | 7.3:+12915055 | None:intergenic |
TTCAAAAGATTGGTGATGAT+GGG | 0.513346 | 7.3:-12917511 | MS.gene09875:CDS |
AAAGCTGGAACTGCAGTTGT+TGG | 0.521999 | 7.3:-12914985 | MS.gene09875:CDS |
GCTAGTGAAGTGGACTCAAA+AGG | 0.523675 | 7.3:-12917716 | MS.gene09875:CDS |
AACAAAGAGGCTATGTGTAA+TGG | 0.532105 | 7.3:+12917788 | None:intergenic |
GGTTTCTATTAGGTGGTGCG+TGG | 0.538397 | 7.3:-12914729 | MS.gene09875:CDS |
TCTTGCCAAACTCCACCTGG+TGG | 0.548039 | 7.3:+12915054 | None:intergenic |
TGCATTTCAAGGCCTCAAGA+TGG | 0.554573 | 7.3:+12917459 | None:intergenic |
CAATCAGCATTAAACCCACC+AGG | 0.558098 | 7.3:-12915069 | MS.gene09875:intron |
TCCAAGTTTAGCTAGTGAAG+TGG | 0.563812 | 7.3:-12917726 | MS.gene09875:CDS |
AGGACACCTGGAGGTTGTTG+AGG | 0.565708 | 7.3:-12917561 | MS.gene09875:CDS |
CAGCTCTTGTGCTCCACTCA+CGG | 0.566918 | 7.3:+12917427 | None:intergenic |
TGAATACCTGAATTTGCTTG+AGG | 0.576176 | 7.3:+12917354 | None:intergenic |
TGGCAAGAAAATACACATAG+TGG | 0.580636 | 7.3:-12915039 | MS.gene09875:CDS |
CTCCAGGTGTCCTCCTGACA+CGG | 0.593297 | 7.3:+12917571 | None:intergenic |
CAGCTGAAGCCAAATGAAGA+GGG | 0.598579 | 7.3:+12917687 | None:intergenic |
AGCAAACACTTTGAATAACA+AGG | 0.607273 | 7.3:-12915353 | MS.gene09875:CDS |
CTCTAAATATCCAAACAAAG+AGG | 0.608525 | 7.3:+12917775 | None:intergenic |
TGCATAGTGCAATCCGTGAG+TGG | 0.615748 | 7.3:-12917440 | MS.gene09875:CDS |
ACCAGGTGTAACCAATCCAA+TGG | 0.618579 | 7.3:+12914780 | None:intergenic |
ATACATTTGGCCGTGTCAGG+AGG | 0.620224 | 7.3:-12917581 | MS.gene09875:CDS |
TCAGCTGAAGCCAAATGAAG+AGG | 0.621530 | 7.3:+12917686 | None:intergenic |
AACTATTGCAATGACCATTG+CGG | 0.626441 | 7.3:-12914833 | MS.gene09875:CDS |
TTTCTATTAGGTGGTGCGTG+GGG | 0.634666 | 7.3:-12914727 | MS.gene09875:CDS |
GCATCATAATAAATATGACC+AGG | 0.638930 | 7.3:+12914763 | None:intergenic |
TTAAGAATAAGGTTATAATG+TGG | 0.640084 | 7.3:-12914861 | MS.gene09875:CDS |
CAACATAAAAGTAACCGCAA+TGG | 0.641263 | 7.3:+12914819 | None:intergenic |
GCTGTTGCATGTTCAAGACA+AGG | 0.657457 | 7.3:-12917408 | MS.gene09875:CDS |
GCAAACACTTTGAATAACAA+GGG | 0.663159 | 7.3:-12915352 | MS.gene09875:intron |
TGTTAGATATAACCATCTTG+AGG | 0.666442 | 7.3:-12917471 | MS.gene09875:CDS |
TTGCATGTTCAAGACAAGGA+GGG | 0.685723 | 7.3:-12917404 | MS.gene09875:CDS |
GTTGCATGTTCAAGACAAGG+AGG | 0.687239 | 7.3:-12917405 | MS.gene09875:CDS |
CGTGTCAGGAGGACACCTGG+AGG | 0.692858 | 7.3:-12917570 | MS.gene09875:CDS |
TCAGCATTAAACCCACCAGG+TGG | 0.719416 | 7.3:-12915066 | MS.gene09875:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTAAATTAATTATTTTTTTA+GGG | - | chr7.3:12916402-12916421 | MS.gene09875:intron | 0.0% |
!! | AAAATGTATAATAAAATGTA+AGG | + | chr7.3:12915276-12915295 | None:intergenic | 10.0% |
!! | TAGAAAGAAAAATAAAAATA+TGG | + | chr7.3:12916238-12916257 | None:intergenic | 10.0% |
!!! | TATTGACTTTATTTTTTTTA+TGG | - | chr7.3:12916652-12916671 | MS.gene09875:intron | 10.0% |
!! | AAGAAAAATAAAAATATGGT+AGG | + | chr7.3:12916234-12916253 | None:intergenic | 15.0% |
!! | ACAAAAGAAATATTAAAAGT+AGG | - | chr7.3:12915752-12915771 | MS.gene09875:intron | 15.0% |
!! | ATAGAATTTATAGAAAAGTT+GGG | - | chr7.3:12915808-12915827 | MS.gene09875:intron | 15.0% |
!! | ATATTTATTATGATGCTTAT+AGG | - | chr7.3:12917815-12917834 | MS.gene09875:CDS | 15.0% |
!! | CAAAAGAAATATTAAAAGTA+GGG | - | chr7.3:12915753-12915772 | MS.gene09875:intron | 15.0% |
!! | TATAGAATTTATAGAAAAGT+TGG | - | chr7.3:12915807-12915826 | MS.gene09875:intron | 15.0% |
!! | TTTAATGCAACATTAATTAT+TGG | + | chr7.3:12916925-12916944 | None:intergenic | 15.0% |
!!! | AAAAATAGTATTCTCTAAAA+TGG | - | chr7.3:12916975-12916994 | MS.gene09875:intron | 15.0% |
!!! | TGTTCTTTATTTATTCATTT+TGG | - | chr7.3:12916185-12916204 | MS.gene09875:intron | 15.0% |
!! | AAAGAGAAGATTAATTCAAA+AGG | - | chr7.3:12915451-12915470 | MS.gene09875:intron | 20.0% |
!! | AATAGTAACCAATAAAAATG+TGG | + | chr7.3:12915249-12915268 | None:intergenic | 20.0% |
!! | AATCCAATACATTGAAAAAT+TGG | - | chr7.3:12917377-12917396 | MS.gene09875:CDS | 20.0% |
!! | ACCTAAACCAAAAATTTATA+GGG | - | chr7.3:12916110-12916129 | MS.gene09875:intron | 20.0% |
!! | ATACACGTAATATAAACTAA+AGG | - | chr7.3:12916702-12916721 | MS.gene09875:intron | 20.0% |
!! | ATATCTATTCCACAAATATT+TGG | + | chr7.3:12915607-12915626 | None:intergenic | 20.0% |
!! | ATCCAATACATTGAAAAATT+GGG | - | chr7.3:12917378-12917397 | MS.gene09875:CDS | 20.0% |
!! | ATTAATGTTGCATTAAAACT+TGG | - | chr7.3:12916928-12916947 | MS.gene09875:intron | 20.0% |
!! | ATTATAACCTTATTCTTAAG+TGG | + | chr7.3:12917709-12917728 | None:intergenic | 20.0% |
!! | GATATTAAACAGTTTCAAAA+AGG | - | chr7.3:12915622-12915641 | MS.gene09875:intron | 20.0% |
!! | TAAGAGAAGTTAATTATATG+TGG | + | chr7.3:12916385-12916404 | None:intergenic | 20.0% |
!! | TACACGTAATATAAACTAAA+GGG | - | chr7.3:12916703-12916722 | MS.gene09875:intron | 20.0% |
!! | TACCTAAACCAAAAATTTAT+AGG | - | chr7.3:12916109-12916128 | MS.gene09875:intron | 20.0% |
!! | TAGAATTTATAGAAAAGTTG+GGG | - | chr7.3:12915809-12915828 | MS.gene09875:intron | 20.0% |
!! | TATGTGTAATTTCTTCAAAA+TGG | + | chr7.3:12916779-12916798 | None:intergenic | 20.0% |
!! | TTAAGAATAAGGTTATAATG+TGG | - | chr7.3:12917710-12917729 | MS.gene09875:CDS | 20.0% |
!!! | AAATTGTAAGGTTTGTTTTT+TGG | - | chr7.3:12917896-12917915 | MS.gene09875:CDS | 20.0% |
!!! | AATAACCCACATATTTTTTA+AGG | - | chr7.3:12915538-12915557 | MS.gene09875:intron | 20.0% |
!!! | AATACATTTTAATTGAAGCA+GGG | - | chr7.3:12917302-12917321 | MS.gene09875:intron | 20.0% |
!!! | ATCAAAATTATGATTTGTTG+TGG | - | chr7.3:12915645-12915664 | MS.gene09875:intron | 20.0% |
!!! | ATCAGCTTCTAATTTTAATA+AGG | + | chr7.3:12915383-12915402 | None:intergenic | 20.0% |
!!! | CAACAACTTTTCTATTAAAT+AGG | - | chr7.3:12916266-12916285 | MS.gene09875:intron | 20.0% |
! | AAAACATTTATTTGACTCCT+TGG | + | chr7.3:12916802-12916821 | None:intergenic | 25.0% |
! | ATACTGAGTTATACATCATT+TGG | + | chr7.3:12916300-12916319 | None:intergenic | 25.0% |
! | ATTATGATGCTTATAGGTTA+GGG | - | chr7.3:12917821-12917840 | MS.gene09875:CDS | 25.0% |
! | CTCTATGAAGCAATAATAAA+TGG | - | chr7.3:12914687-12914706 | MS.gene09875:CDS | 25.0% |
! | CTGCTTCAATTAAAATGTAT+TGG | + | chr7.3:12917303-12917322 | None:intergenic | 25.0% |
! | TAAACCAAAAATTTATAGGG+AGG | - | chr7.3:12916113-12916132 | MS.gene09875:intron | 25.0% |
! | TAAACCAAAGATTTATAGAG+AGG | - | chr7.3:12916040-12916059 | MS.gene09875:intron | 25.0% |
! | TAACCAATAAAAATGTGGTA+AGG | + | chr7.3:12915244-12915263 | None:intergenic | 25.0% |
! | TATTATGATGCTTATAGGTT+AGG | - | chr7.3:12917820-12917839 | MS.gene09875:CDS | 25.0% |
! | TCAAAATACATACAACATCA+AGG | - | chr7.3:12917412-12917431 | MS.gene09875:CDS | 25.0% |
! | TCTCTACAATAAATAGATAG+AGG | - | chr7.3:12916886-12916905 | MS.gene09875:intron | 25.0% |
! | TGCTTCCTTAAAAAATATGT+GGG | + | chr7.3:12915546-12915565 | None:intergenic | 25.0% |
! | TTGCTTCCTTAAAAAATATG+TGG | + | chr7.3:12915547-12915566 | None:intergenic | 25.0% |
! | TTGCTTTGATTCAAATTGTA+AGG | - | chr7.3:12917884-12917903 | MS.gene09875:CDS | 25.0% |
! | TTTGCTTAATTGTAACATAG+AGG | - | chr7.3:12915675-12915694 | MS.gene09875:intron | 25.0% |
!! | AATGGATAAGTATTGTGAAA+CGG | - | chr7.3:12916993-12917012 | MS.gene09875:intron | 25.0% |
!! | AGTATAAGTTTAGAATGTTG+AGG | + | chr7.3:12916453-12916472 | None:intergenic | 25.0% |
!! | GTATAAGTTTAGAATGTTGA+GGG | + | chr7.3:12916452-12916471 | None:intergenic | 25.0% |
!! | TATGTTGCTTACTTATATGT+GGG | - | chr7.3:12917768-12917787 | MS.gene09875:CDS | 25.0% |
!! | TCTCTATAAATCTTTGGTTT+AGG | + | chr7.3:12916041-12916060 | None:intergenic | 25.0% |
!! | TTATGTTGCTTACTTATATG+TGG | - | chr7.3:12917767-12917786 | MS.gene09875:CDS | 25.0% |
!!! | AAAATTATGATTTGTTGTGG+TGG | - | chr7.3:12915648-12915667 | MS.gene09875:intron | 25.0% |
!!! | AAGAGGATTTAGTTTTTGTA+AGG | + | chr7.3:12914724-12914743 | None:intergenic | 25.0% |
!!! | ATACATTTTAATTGAAGCAG+GGG | - | chr7.3:12917303-12917322 | MS.gene09875:intron | 25.0% |
!!! | ATTTTTGGTTTAGGTAGAAT+TGG | + | chr7.3:12916105-12916124 | None:intergenic | 25.0% |
!!! | CAATACATTTTAATTGAAGC+AGG | - | chr7.3:12917301-12917320 | MS.gene09875:intron | 25.0% |
!!! | TAAGGTTTGTTTTTTGGATA+AGG | - | chr7.3:12917902-12917921 | MS.gene09875:CDS | 25.0% |
!!! | TCCCTATAAATTTTTGGTTT+AGG | + | chr7.3:12916114-12916133 | None:intergenic | 25.0% |
!!! | TGATCTTGAATTGATTTGTT+GGG | - | chr7.3:12915577-12915596 | MS.gene09875:intron | 25.0% |
AAACTTTCATTCTCTCCATT+TGG | - | chr7.3:12914753-12914772 | MS.gene09875:CDS | 30.0% | |
AAATGTCATGGTTGCAATTA+CGG | + | chr7.3:12917482-12917501 | None:intergenic | 30.0% | |
AATCTTAAACAAGCAGACTT+AGG | - | chr7.3:12915935-12915954 | MS.gene09875:intron | 30.0% | |
AATTGTAACATAGAGGATTG+CGG | - | chr7.3:12915682-12915701 | MS.gene09875:intron | 30.0% | |
ACATACAACATCAAGGTAAT+TGG | - | chr7.3:12917419-12917438 | MS.gene09875:CDS | 30.0% | |
AGCAAACACTTTGAATAACA+AGG | - | chr7.3:12917218-12917237 | MS.gene09875:intron | 30.0% | |
ATCTTAAACAAGCAGACTTA+GGG | - | chr7.3:12915936-12915955 | MS.gene09875:intron | 30.0% | |
ATTAAAAAAGACGTACCTAG+TGG | + | chr7.3:12915718-12915737 | None:intergenic | 30.0% | |
CCATGTTCATTTCAAAAGAT+TGG | - | chr7.3:12915050-12915069 | MS.gene09875:CDS | 30.0% | |
CTCTAAATATCCAAACAAAG+AGG | + | chr7.3:12914799-12914818 | None:intergenic | 30.0% | |
GCAAACACTTTGAATAACAA+GGG | - | chr7.3:12917219-12917238 | MS.gene09875:intron | 30.0% | |
GCATCATAATAAATATGACC+AGG | + | chr7.3:12917811-12917830 | None:intergenic | 30.0% | |
GTGACACTCAATAAAATGAA+AGG | + | chr7.3:12916509-12916528 | None:intergenic | 30.0% | |
TATAGGTTAGGGTTTCTATT+AGG | - | chr7.3:12917832-12917851 | MS.gene09875:CDS | 30.0% | |
TATTTGTAGTGACCTTAATG+TGG | + | chr7.3:12915877-12915896 | None:intergenic | 30.0% | |
TCGGGAATCAAACAAATATT+TGG | + | chr7.3:12914951-12914970 | None:intergenic | 30.0% | |
TGAAGAAATTACACATACCA+AGG | - | chr7.3:12916782-12916801 | MS.gene09875:intron | 30.0% | |
TGACAAACTTCCTATACATT+TGG | - | chr7.3:12914977-12914996 | MS.gene09875:CDS | 30.0% | |
TGACATTCATAATGAGATTC+AGG | - | chr7.3:12917063-12917082 | MS.gene09875:intron | 30.0% | |
TGTTAGATATAACCATCTTG+AGG | - | chr7.3:12915100-12915119 | MS.gene09875:intron | 30.0% | |
! | AAGCGAAAGCAAGAATTTTA+TGG | + | chr7.3:12917181-12917200 | None:intergenic | 30.0% |
! | AGAGAATGAAAGTTTGCTTA+AGG | + | chr7.3:12914748-12914767 | None:intergenic | 30.0% |
! | AGAGTTATCTCCAAATTTTG+AGG | - | chr7.3:12914647-12914666 | MS.gene09875:CDS | 30.0% |
! | ATCTTTGGTTTAGGTAGAAT+TGG | + | chr7.3:12916032-12916051 | None:intergenic | 30.0% |
! | CAACCTTACCACATTTTTAT+TGG | - | chr7.3:12915238-12915257 | MS.gene09875:intron | 30.0% |
! | TAATGCTGATTGAAATGTCA+TGG | + | chr7.3:12917494-12917513 | None:intergenic | 30.0% |
! | TACACCTCCCTATAAATTTT+TGG | + | chr7.3:12916120-12916139 | None:intergenic | 30.0% |
!! | ATCTTGAATTGATTTGTTGG+GGG | - | chr7.3:12915579-12915598 | MS.gene09875:intron | 30.0% |
!! | CTCCCAATTTTTCAATGTAT+TGG | + | chr7.3:12917383-12917402 | None:intergenic | 30.0% |
!! | CTGATCTTGAATTGATTTGT+TGG | - | chr7.3:12915576-12915595 | MS.gene09875:intron | 30.0% |
!! | GATCTTGAATTGATTTGTTG+GGG | - | chr7.3:12915578-12915597 | MS.gene09875:intron | 30.0% |
!! | TCCAAATTTTGAGGATGATA+CGG | - | chr7.3:12914656-12914675 | MS.gene09875:CDS | 30.0% |
!! | TTCAAAAGATTGGTGATGAT+GGG | - | chr7.3:12915060-12915079 | MS.gene09875:CDS | 30.0% |
!! | TTTCAAAAGATTGGTGATGA+TGG | - | chr7.3:12915059-12915078 | MS.gene09875:CDS | 30.0% |
!!! | CCAATCTTTTGAAATGAACA+TGG | + | chr7.3:12915053-12915072 | None:intergenic | 30.0% |
AACAAAGAGGCTATGTGTAA+TGG | + | chr7.3:12914786-12914805 | None:intergenic | 35.0% | |
AACACAAAGTGAAGCAAAGA+AGG | + | chr7.3:12917662-12917681 | None:intergenic | 35.0% | |
AACTATTGCAATGACCATTG+CGG | - | chr7.3:12917738-12917757 | MS.gene09875:CDS | 35.0% | |
AATCAATTCAAGATCAGCCA+CGG | + | chr7.3:12915573-12915592 | None:intergenic | 35.0% | |
ACCGTATCATCCTCAAAATT+TGG | + | chr7.3:12914660-12914679 | None:intergenic | 35.0% | |
ACTTATGGTATTTGCAAAGC+TGG | - | chr7.3:12917571-12917590 | MS.gene09875:CDS | 35.0% | |
AGGAAGTTTGTCATCATTGT+CGG | + | chr7.3:12914970-12914989 | None:intergenic | 35.0% | |
AGTTAACCTCAAGCAAATTC+AGG | - | chr7.3:12915211-12915230 | MS.gene09875:intron | 35.0% | |
CAACATAAAAGTAACCGCAA+TGG | + | chr7.3:12917755-12917774 | None:intergenic | 35.0% | |
CGGTTGTTCAATATATCCAA+AGG | + | chr7.3:12917252-12917271 | None:intergenic | 35.0% | |
TGCACCTCTCTATAAATCTT+TGG | + | chr7.3:12916047-12916066 | None:intergenic | 35.0% | |
TGGCAAGAAAATACACATAG+TGG | - | chr7.3:12917532-12917551 | MS.gene09875:CDS | 35.0% | |
TGGCTTTCCACTTAAGAATA+AGG | - | chr7.3:12917699-12917718 | MS.gene09875:CDS | 35.0% | |
TGTAATGGTGTTTCACCAAA+TGG | + | chr7.3:12914771-12914790 | None:intergenic | 35.0% | |
TTACACATAGCCTCTTTGTT+TGG | - | chr7.3:12914786-12914805 | MS.gene09875:CDS | 35.0% | |
! | GAAAGTTTGCTTAAGGTAAG+AGG | + | chr7.3:12914741-12914760 | None:intergenic | 35.0% |
! | GAGGGTTGACATTAATTTGA+GGG | + | chr7.3:12916434-12916453 | None:intergenic | 35.0% |
! | GATAAGTATTGTGAAACGGA+TGG | - | chr7.3:12916997-12917016 | MS.gene09875:intron | 35.0% |
! | TGAATACCTGAATTTGCTTG+AGG | + | chr7.3:12915220-12915239 | None:intergenic | 35.0% |
! | TGAGGGTTGACATTAATTTG+AGG | + | chr7.3:12916435-12916454 | None:intergenic | 35.0% |
! | TTAATGTGGATTATTGCCAG+CGG | + | chr7.3:12915863-12915882 | None:intergenic | 35.0% |
!! | GTTGTGTTGATTCTTGTTTG+TGG | - | chr7.3:12917679-12917698 | MS.gene09875:CDS | 35.0% |
!! | TTTTAAGGAAGCAATAACCG+TGG | - | chr7.3:12915553-12915572 | MS.gene09875:intron | 35.0% |
!!! | GTAACATGACGACTCTTTTT+TGG | - | chr7.3:12916137-12916156 | MS.gene09875:intron | 35.0% |
!!! | GTGCATTTGTACGAGTTTTT+TGG | + | chr7.3:12917330-12917349 | None:intergenic | 35.0% |
AATTGGATAGAAGAGACACG+TGG | - | chr7.3:12917436-12917455 | MS.gene09875:CDS | 40.0% | |
AGGGTAACACGATTCTTCAT+TGG | - | chr7.3:12915186-12915205 | MS.gene09875:intron | 40.0% | |
AGGTTAGGGTTTCTATTAGG+TGG | - | chr7.3:12917835-12917854 | MS.gene09875:CDS | 40.0% | |
CTGCAGTTGTTGGATATGAT+TGG | - | chr7.3:12917596-12917615 | MS.gene09875:CDS | 40.0% | |
CTTACTTATATGTGGGCCAT+TGG | - | chr7.3:12917775-12917794 | MS.gene09875:CDS | 40.0% | |
GCATACACTTGCACTACTTA+TGG | - | chr7.3:12917556-12917575 | MS.gene09875:CDS | 40.0% | |
GCTGGCAATAATCCACATTA+AGG | - | chr7.3:12915862-12915881 | MS.gene09875:intron | 40.0% | |
GGAAGTTTGTCATCATTGTC+GGG | + | chr7.3:12914969-12914988 | None:intergenic | 40.0% | |
GGATTGCACTATGCATTTCA+AGG | + | chr7.3:12915126-12915145 | None:intergenic | 40.0% | |
GGGTAACACGATTCTTCATT+GGG | - | chr7.3:12915187-12915206 | MS.gene09875:intron | 40.0% | |
GTCTATGAAATCTGCTTGAG+CGG | + | chr7.3:12917272-12917291 | None:intergenic | 40.0% | |
TCCAAGTTTAGCTAGTGAAG+TGG | - | chr7.3:12914845-12914864 | MS.gene09875:CDS | 40.0% | |
TCCACTTCACTAGCTAAACT+TGG | + | chr7.3:12914849-12914868 | None:intergenic | 40.0% | |
TGCGGTTCTTAAATTCCACT+AGG | - | chr7.3:12915700-12915719 | MS.gene09875:intron | 40.0% | |
TTATATGTGGGCCATTGGAT+TGG | - | chr7.3:12917780-12917799 | MS.gene09875:CDS | 40.0% | |
TTGCATGTTCAAGACAAGGA+GGG | - | chr7.3:12915167-12915186 | MS.gene09875:intron | 40.0% | |
TTTGCTGCTGTTCTCATTTG+GGG | + | chr7.3:12917204-12917223 | None:intergenic | 40.0% | |
! | GACAAGTATCGTGAAACAGA+GGG | + | chr7.3:12916757-12916776 | None:intergenic | 40.0% |
! | GTTTGCTGCTGTTCTCATTT+GGG | + | chr7.3:12917205-12917224 | None:intergenic | 40.0% |
! | TGTTTGCTGCTGTTCTCATT+TGG | + | chr7.3:12917206-12917225 | None:intergenic | 40.0% |
!! | TTGGGGGTACCAAATATTTG+TGG | - | chr7.3:12915595-12915614 | MS.gene09875:intron | 40.0% |
AAAGCTGGAACTGCAGTTGT+TGG | - | chr7.3:12917586-12917605 | MS.gene09875:CDS | 45.0% | |
ACCAGGTGTAACCAATCCAA+TGG | + | chr7.3:12917794-12917813 | None:intergenic | 45.0% | |
AGGTCGTTACCCTCTTCATT+TGG | - | chr7.3:12914875-12914894 | MS.gene09875:CDS | 45.0% | |
ATAGAAAAGTTGGGGTGCAG+TGG | - | chr7.3:12915817-12915836 | MS.gene09875:intron | 45.0% | |
CAATCAGCATTAAACCCACC+AGG | - | chr7.3:12917502-12917521 | MS.gene09875:CDS | 45.0% | |
CAGCTGAAGCCAAATGAAGA+GGG | + | chr7.3:12914887-12914906 | None:intergenic | 45.0% | |
GCTGTTGCATGTTCAAGACA+AGG | - | chr7.3:12915163-12915182 | MS.gene09875:intron | 45.0% | |
GTTGCATGTTCAAGACAAGG+AGG | - | chr7.3:12915166-12915185 | MS.gene09875:intron | 45.0% | |
GTTTCTATTAGGTGGTGCGT+GGG | - | chr7.3:12917843-12917862 | MS.gene09875:CDS | 45.0% | |
TAACAAGGGTCTCACACCTT+TGG | - | chr7.3:12917233-12917252 | MS.gene09875:intron | 45.0% | |
TCAGCTGAAGCCAAATGAAG+AGG | + | chr7.3:12914888-12914907 | None:intergenic | 45.0% | |
TGCATTTCAAGGCCTCAAGA+TGG | + | chr7.3:12915115-12915134 | None:intergenic | 45.0% | |
TTTCTATTAGGTGGTGCGTG+GGG | - | chr7.3:12917844-12917863 | MS.gene09875:CDS | 45.0% | |
! | CTTCATTTGGCTTCAGCTGA+AGG | - | chr7.3:12914888-12914907 | MS.gene09875:CDS | 45.0% |
! | GCTAGTGAAGTGGACTCAAA+AGG | - | chr7.3:12914855-12914874 | MS.gene09875:CDS | 45.0% |
! | GGACAAGTATCGTGAAACAG+AGG | + | chr7.3:12916758-12916777 | None:intergenic | 45.0% |
! | TTTTCTTGCCAAACTCCACC+TGG | + | chr7.3:12917523-12917542 | None:intergenic | 45.0% |
!! | AAAAAATAAAATAAAATGAA+AGG | + | chr7.3:12916476-12916495 | None:intergenic | 5.0% |
!! | ATAATATATTATATTATTCA+TGG | + | chr7.3:12915781-12915800 | None:intergenic | 5.0% |
!!! | ATTTTATTTTATTTTTTTGA+AGG | - | chr7.3:12916479-12916498 | MS.gene09875:intron | 5.0% |
!!! | CTTAAATTAATTATTTTTTT+AGG | - | chr7.3:12916401-12916420 | MS.gene09875:intron | 5.0% |
!!! | TAAATTAATTATTTTTTTAG+GGG | - | chr7.3:12916403-12916422 | MS.gene09875:intron | 5.0% |
ATACATTTGGCCGTGTCAGG+AGG | - | chr7.3:12914990-12915009 | MS.gene09875:CDS | 50.0% | |
CCTATACATTTGGCCGTGTC+AGG | - | chr7.3:12914987-12915006 | MS.gene09875:CDS | 50.0% | |
CCTGACACGGCCAAATGTAT+AGG | + | chr7.3:12914990-12915009 | None:intergenic | 50.0% | |
GGTTTCTATTAGGTGGTGCG+TGG | - | chr7.3:12917842-12917861 | MS.gene09875:CDS | 50.0% | |
TAAACCCACCAGGTGGAGTT+TGG | - | chr7.3:12917512-12917531 | MS.gene09875:CDS | 50.0% | |
TCAACTCCTCAACAACCTCC+AGG | + | chr7.3:12915019-12915038 | None:intergenic | 50.0% | |
TCAGCATTAAACCCACCAGG+TGG | - | chr7.3:12917505-12917524 | MS.gene09875:CDS | 50.0% | |
TGCATAGTGCAATCCGTGAG+TGG | - | chr7.3:12915131-12915150 | MS.gene09875:intron | 50.0% | |
! | ATGTGGATTATTGCCAGCGG+CGG | + | chr7.3:12915860-12915879 | None:intergenic | 50.0% |
! | GGTCTGTGCACAGAGTGTTA+AGG | + | chr7.3:12917160-12917179 | None:intergenic | 50.0% |
!! | GCCATTGGATTGGTTACACC+TGG | - | chr7.3:12917790-12917809 | MS.gene09875:CDS | 50.0% |
!! | GTTGGGGTGCAGTGGTTTTA+TGG | - | chr7.3:12915825-12915844 | MS.gene09875:intron | 50.0% |
AGGACACCTGGAGGTTGTTG+AGG | - | chr7.3:12915010-12915029 | MS.gene09875:CDS | 55.0% | |
CAGCTCTTGTGCTCCACTCA+CGG | + | chr7.3:12915147-12915166 | None:intergenic | 55.0% | |
CTTGCCAAACTCCACCTGGT+GGG | + | chr7.3:12917519-12917538 | None:intergenic | 55.0% | |
TCTTGCCAAACTCCACCTGG+TGG | + | chr7.3:12917520-12917539 | None:intergenic | 55.0% | |
ATGGATCTCAGATCCGCCGC+TGG | - | chr7.3:12915844-12915863 | MS.gene09875:intron | 60.0% | |
CTCCAGGTGTCCTCCTGACA+CGG | + | chr7.3:12915003-12915022 | None:intergenic | 60.0% | |
CGTGTCAGGAGGACACCTGG+AGG | - | chr7.3:12915001-12915020 | MS.gene09875:CDS | 65.0% | |
GGCCGTGTCAGGAGGACACC+TGG | - | chr7.3:12914998-12915017 | MS.gene09875:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 12914642 | 12917951 | 12914642 | ID=MS.gene09875 |
chr7.3 | mRNA | 12914642 | 12917951 | 12914642 | ID=MS.gene09875.t1;Parent=MS.gene09875 |
chr7.3 | exon | 12917361 | 12917951 | 12917361 | ID=MS.gene09875.t1.exon1;Parent=MS.gene09875.t1 |
chr7.3 | CDS | 12917361 | 12917951 | 12917361 | ID=cds.MS.gene09875.t1;Parent=MS.gene09875.t1 |
chr7.3 | exon | 12915353 | 12915416 | 12915353 | ID=MS.gene09875.t1.exon2;Parent=MS.gene09875.t1 |
chr7.3 | CDS | 12915353 | 12915416 | 12915353 | ID=cds.MS.gene09875.t1;Parent=MS.gene09875.t1 |
chr7.3 | exon | 12914642 | 12915084 | 12914642 | ID=MS.gene09875.t1.exon3;Parent=MS.gene09875.t1 |
chr7.3 | CDS | 12914642 | 12915084 | 12914642 | ID=cds.MS.gene09875.t1;Parent=MS.gene09875.t1 |
Gene Sequence |
Protein sequence |