Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20145.t1 | XP_013447300.1 | 93.8 | 384 | 16 | 3 | 1 | 379 | 1 | 381 | 2.20E-209 | 738 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20145.t1 | Q9M0G2 | 52.1 | 382 | 147 | 12 | 1 | 373 | 1 | 355 | 1.3e-98 | 361.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20145.t1 | A0A072TV59 | 93.8 | 384 | 16 | 3 | 1 | 379 | 1 | 381 | 1.6e-209 | 738.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene20145.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056618 | MS.gene20145 | 0.828636 | 8.05E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20145.t1 | MTR_8g102100 | 94.271 | 384 | 14 | 3 | 1 | 379 | 1 | 381 | 0.0 | 718 |
| MS.gene20145.t1 | MTR_6g090380 | 55.610 | 410 | 111 | 8 | 1 | 373 | 1 | 376 | 1.39e-142 | 410 |
| MS.gene20145.t1 | MTR_3g103960 | 44.242 | 330 | 114 | 9 | 46 | 374 | 18 | 278 | 8.33e-77 | 238 |
| MS.gene20145.t1 | MTR_4g078660 | 71.818 | 110 | 31 | 0 | 75 | 184 | 54 | 163 | 8.56e-58 | 191 |
| MS.gene20145.t1 | MTR_2g090605 | 74.757 | 103 | 26 | 0 | 81 | 183 | 77 | 179 | 6.11e-57 | 191 |
| MS.gene20145.t1 | MTR_7g092070 | 72.897 | 107 | 29 | 0 | 77 | 183 | 260 | 366 | 5.17e-54 | 190 |
| MS.gene20145.t1 | MTR_5g071070 | 46.025 | 239 | 97 | 9 | 77 | 283 | 144 | 382 | 3.05e-53 | 186 |
| MS.gene20145.t1 | MTR_5g071070 | 46.025 | 239 | 97 | 9 | 77 | 283 | 226 | 464 | 1.12e-52 | 186 |
| MS.gene20145.t1 | MTR_3g029590 | 51.515 | 165 | 70 | 2 | 77 | 235 | 260 | 420 | 1.98e-51 | 183 |
| MS.gene20145.t1 | MTR_5g082830 | 54.037 | 161 | 70 | 1 | 77 | 237 | 213 | 369 | 1.64e-50 | 180 |
| MS.gene20145.t1 | MTR_3g435680 | 66.379 | 116 | 38 | 1 | 68 | 183 | 139 | 253 | 1.95e-50 | 174 |
| MS.gene20145.t1 | MTR_1g050438 | 63.551 | 107 | 39 | 0 | 77 | 183 | 224 | 330 | 1.13e-48 | 173 |
| MS.gene20145.t1 | MTR_0728s0020 | 63.551 | 107 | 39 | 0 | 77 | 183 | 240 | 346 | 1.86e-48 | 173 |
| MS.gene20145.t1 | MTR_1g075890 | 67.290 | 107 | 35 | 0 | 77 | 183 | 225 | 331 | 3.20e-47 | 170 |
| MS.gene20145.t1 | MTR_3g070880 | 49.693 | 163 | 54 | 3 | 77 | 237 | 159 | 295 | 3.70e-47 | 168 |
| MS.gene20145.t1 | MTR_3g435590 | 47.024 | 168 | 78 | 4 | 77 | 243 | 234 | 391 | 8.71e-47 | 166 |
| MS.gene20145.t1 | MTR_3g464270 | 46.914 | 162 | 75 | 4 | 79 | 238 | 7 | 159 | 4.13e-40 | 145 |
| MS.gene20145.t1 | MTR_3g464260 | 68.056 | 72 | 23 | 0 | 112 | 183 | 212 | 283 | 1.10e-29 | 120 |
| MS.gene20145.t1 | MTR_3g464290 | 60.759 | 79 | 30 | 1 | 77 | 154 | 96 | 174 | 4.74e-29 | 117 |
| MS.gene20145.t1 | MTR_3g464280 | 42.991 | 107 | 27 | 1 | 77 | 183 | 184 | 256 | 1.10e-20 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20145.t1 | AT4G29190 | 54.569 | 383 | 136 | 14 | 1 | 373 | 1 | 355 | 4.33e-127 | 370 |
| MS.gene20145.t1 | AT2G19810 | 51.571 | 382 | 152 | 10 | 1 | 373 | 1 | 358 | 4.74e-115 | 339 |
| MS.gene20145.t1 | AT2G25900 | 44.904 | 363 | 138 | 9 | 1 | 350 | 1 | 314 | 2.03e-90 | 275 |
| MS.gene20145.t1 | AT2G25900 | 44.904 | 363 | 138 | 9 | 1 | 350 | 1 | 314 | 2.03e-90 | 275 |
| MS.gene20145.t1 | AT1G03790 | 51.724 | 174 | 83 | 1 | 12 | 184 | 13 | 186 | 2.84e-58 | 194 |
| MS.gene20145.t1 | AT5G44260 | 68.548 | 124 | 30 | 2 | 62 | 184 | 49 | 164 | 2.34e-55 | 186 |
| MS.gene20145.t1 | AT2G41900 | 71.028 | 107 | 31 | 0 | 77 | 183 | 257 | 363 | 3.24e-53 | 187 |
| MS.gene20145.t1 | AT5G12850 | 71.963 | 107 | 30 | 0 | 77 | 183 | 253 | 359 | 4.95e-53 | 187 |
| MS.gene20145.t1 | AT3G55980 | 46.829 | 205 | 94 | 4 | 77 | 278 | 207 | 399 | 1.45e-51 | 181 |
| MS.gene20145.t1 | AT3G55980 | 46.829 | 205 | 94 | 4 | 77 | 278 | 274 | 466 | 3.40e-51 | 181 |
| MS.gene20145.t1 | AT5G58620 | 69.159 | 107 | 33 | 0 | 77 | 183 | 205 | 311 | 7.50e-51 | 179 |
| MS.gene20145.t1 | AT5G07500 | 63.333 | 120 | 42 | 1 | 66 | 183 | 35 | 154 | 8.97e-51 | 170 |
| MS.gene20145.t1 | AT2G40140 | 53.459 | 159 | 69 | 1 | 77 | 235 | 210 | 363 | 1.16e-48 | 174 |
| MS.gene20145.t1 | AT2G40140 | 53.459 | 159 | 69 | 1 | 77 | 235 | 210 | 363 | 1.16e-48 | 174 |
Find 125 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGGATCGGGTTCGGGTTC+GGG | 0.198833 | 4.4:+3731274 | MS.gene20145:CDS |
| TAATGGATCGGGTTCGGGTT+CGG | 0.208577 | 4.4:+3731273 | MS.gene20145:CDS |
| GGAGCTGGTGAGCCCTTTCT+TGG | 0.256293 | 4.4:+3731333 | MS.gene20145:CDS |
| GGGTCGGATCACGGGTCCTC+TGG | 0.290200 | 4.4:-3731080 | None:intergenic |
| TCCGGATGTTGGGTGGGTTT+CGG | 0.313054 | 4.4:+3731312 | MS.gene20145:CDS |
| CGTTGGTAGGCTACAGAATC+CGG | 0.322086 | 4.4:-3731101 | None:intergenic |
| CAACTTCCTTTACGAAAATC+AGG | 0.327092 | 4.4:-3730605 | None:intergenic |
| CTCACACGGCGGAGCAACTT+AGG | 0.327174 | 4.4:+3730750 | MS.gene20145:CDS |
| CACACCGCCGCCATGATGTT+AGG | 0.327724 | 4.4:+3730212 | None:intergenic |
| TGAAGTCATTACCTTCTTCA+TGG | 0.329074 | 4.4:+3731023 | MS.gene20145:CDS |
| TTCTCGCCGGGATGAGAAAA+AGG | 0.329763 | 4.4:-3730533 | None:intergenic |
| CCGGAGTAGTTATACTTTCT+CGG | 0.332203 | 4.4:-3730572 | None:intergenic |
| TGGAATCTGGAAGAGATATA+AGG | 0.338125 | 4.4:+3731212 | MS.gene20145:CDS |
| TGTTGGGTGGGTTTCGGAGC+TGG | 0.339180 | 4.4:+3731318 | MS.gene20145:CDS |
| CGCATGGTGTGTTCGAGTGC+TGG | 0.340661 | 4.4:+3730654 | MS.gene20145:CDS |
| TAATCGTCGTTGGAGGTTAA+AGG | 0.353804 | 4.4:-3730317 | None:intergenic |
| GCCGTTGGATTGTTCATTGT+TGG | 0.354051 | 4.4:-3730281 | None:intergenic |
| GACCGAGTCATCGGAGTAAT+CGG | 0.354759 | 4.4:-3730926 | None:intergenic |
| CAAATGGGTTCTCCTAGATT+CGG | 0.355364 | 4.4:+3731052 | MS.gene20145:CDS |
| TTCTTCATGGAATGTTCAAA+TGG | 0.360051 | 4.4:+3731036 | MS.gene20145:CDS |
| TACTCCGATGACTCGGTCCT+TGG | 0.371166 | 4.4:+3730931 | MS.gene20145:CDS |
| CGTATGACGGTTCTCCTCTC+AGG | 0.385313 | 4.4:+3730816 | MS.gene20145:CDS |
| CGTAAAGGAAGTTGCAAGAA+AGG | 0.403608 | 4.4:+3730614 | MS.gene20145:CDS |
| ACAAACTGGCCGGCGACAAC+TGG | 0.411554 | 4.4:-3730720 | None:intergenic |
| GTGATGGAGAGGGTGGAATC+TGG | 0.428735 | 4.4:+3731199 | MS.gene20145:CDS |
| TGAAGAAGGTAATGACTTCA+TGG | 0.429121 | 4.4:-3731020 | None:intergenic |
| TCCTCCTGGATCGGTTTCTC+CGG | 0.431746 | 4.4:+3730883 | MS.gene20145:CDS |
| GAGCTGGTGAGCCCTTTCTT+GGG | 0.442916 | 4.4:+3731334 | MS.gene20145:CDS |
| ACACCGCCGCCATGATGTTA+GGG | 0.445475 | 4.4:+3730213 | None:intergenic |
| CGGAGTAGTTATACTTTCTC+GGG | 0.448222 | 4.4:-3730571 | None:intergenic |
| CCTCTGGGAGACCCGAATCT+AGG | 0.450232 | 4.4:-3731064 | None:intergenic |
| GGGTGAAGTGGTTGAAGATC+CGG | 0.455522 | 4.4:+3731294 | MS.gene20145:CDS |
| CAGAATCCGGGTCGGATCAC+GGG | 0.457628 | 4.4:-3731088 | None:intergenic |
| AACATTCAATCACCCAAGAA+AGG | 0.463244 | 4.4:-3731346 | None:intergenic |
| TTCGGCGATGCGCACGTGGC+AGG | 0.465958 | 4.4:+3730489 | MS.gene20145:CDS |
| CTTCCGTTCATGTCTCCTCC+TGG | 0.466787 | 4.4:+3730869 | MS.gene20145:CDS |
| TCCGAAACCCACCCAACATC+CGG | 0.467976 | 4.4:-3731313 | None:intergenic |
| ATCAACGCAGTGCACACTCC+GGG | 0.469752 | 4.4:-3730792 | None:intergenic |
| GTTCATGTCTCCTCCTGGAT+CGG | 0.471938 | 4.4:+3730874 | MS.gene20145:CDS |
| GGAATCTGGAAGAGATATAA+GGG | 0.473052 | 4.4:+3731213 | MS.gene20145:CDS |
| TCACACGGCGGAGCAACTTA+GGG | 0.475617 | 4.4:+3730751 | MS.gene20145:CDS |
| ACTCCGATGACTCGGTCCTT+GGG | 0.476813 | 4.4:+3730932 | MS.gene20145:CDS |
| ATTTGAACATTCCATGAAGA+AGG | 0.481692 | 4.4:-3731034 | None:intergenic |
| CGGCGGCGAGCTTTCTCGCC+GGG | 0.483303 | 4.4:-3730545 | None:intergenic |
| CGCAGGTGCCGAGTCGTGGT+AGG | 0.483561 | 4.4:+3731131 | MS.gene20145:CDS |
| GGTCGGATCACGGGTCCTCT+GGG | 0.485156 | 4.4:-3731079 | None:intergenic |
| CGTCTTTACACGGCTGAGTA+CGG | 0.485485 | 4.4:-3730694 | None:intergenic |
| GGATTGTTCATTGTTGGCCA+TGG | 0.498597 | 4.4:-3730275 | None:intergenic |
| TCTTCATGGAATGTTCAAAT+GGG | 0.500081 | 4.4:+3731037 | MS.gene20145:CDS |
| CTCCGACTCAACAGAGTCCC+CGG | 0.512371 | 4.4:+3730774 | MS.gene20145:CDS |
| TCGGTCCTTGGGAAGATCTG+TGG | 0.513782 | 4.4:+3730943 | MS.gene20145:CDS |
| TCCACCGGAGAAACCGATCC+AGG | 0.514556 | 4.4:-3730887 | None:intergenic |
| TGGTTGAAGATCCGGATGTT+GGG | 0.514839 | 4.4:+3731302 | MS.gene20145:CDS |
| ACAGAATCCGGGTCGGATCA+CGG | 0.517668 | 4.4:-3731089 | None:intergenic |
| TTCTAGCTCTGTGAATGAAA+TGG | 0.520762 | 4.4:+3730967 | MS.gene20145:CDS |
| TCCTGGATCGGTTTCTCCGG+TGG | 0.521510 | 4.4:+3730886 | MS.gene20145:CDS |
| ACGGCGGCGAGCTTTCTCGC+CGG | 0.522012 | 4.4:-3730546 | None:intergenic |
| GATTCCACCCTCTCCATCAC+AGG | 0.523810 | 4.4:-3731196 | None:intergenic |
| CGGTCCTTGGGAAGATCTGT+GGG | 0.525368 | 4.4:+3730944 | MS.gene20145:CDS |
| TTGAAGATCCGGATGTTGGG+TGG | 0.525953 | 4.4:+3731305 | MS.gene20145:CDS |
| CACGTGGCAGGTCACATGAC+TGG | 0.526588 | 4.4:+3730501 | MS.gene20145:CDS |
| CTTCCCAAGGACCGAGTCAT+CGG | 0.527368 | 4.4:-3730935 | None:intergenic |
| AAAATCAGGACACGAAGTGC+CGG | 0.531042 | 4.4:-3730591 | None:intergenic |
| GCATGTTCGAGTTTAAGATT+CGG | 0.531245 | 4.4:+3730471 | MS.gene20145:CDS |
| ACATTCAATCACCCAAGAAA+GGG | 0.534836 | 4.4:-3731345 | None:intergenic |
| CTCCGGGGACTCTGTTGAGT+CGG | 0.537123 | 4.4:-3730776 | None:intergenic |
| AAATGGGTTCTCCTAGATTC+GGG | 0.537187 | 4.4:+3731053 | MS.gene20145:CDS |
| AGTTATACTTTCTCGGGTCA+CGG | 0.538971 | 4.4:-3730565 | None:intergenic |
| CCTGCGTAGGTGTCGTTGGT+AGG | 0.548899 | 4.4:-3731114 | None:intergenic |
| GGGTTCGGGTTCGGGTGAAG+TGG | 0.549759 | 4.4:+3731282 | MS.gene20145:CDS |
| CAACTGGTTCCGTCTTTACA+CGG | 0.558745 | 4.4:-3730704 | None:intergenic |
| CGTACTCAGCCGTGTAAAGA+CGG | 0.559308 | 4.4:+3730695 | MS.gene20145:CDS |
| TGAAGATCCGGATGTTGGGT+GGG | 0.561336 | 4.4:+3731306 | MS.gene20145:CDS |
| CTCCGATTACTCCGATGACT+CGG | 0.561730 | 4.4:+3730924 | MS.gene20145:CDS |
| TTGTTCATTGTTGGCCATGG+TGG | 0.564251 | 4.4:-3730272 | None:intergenic |
| GTGGTTGAAGATCCGGATGT+TGG | 0.565014 | 4.4:+3731301 | MS.gene20145:CDS |
| AGGTGGTTCCCCTAACATCA+TGG | 0.567452 | 4.4:-3730222 | None:intergenic |
| GACTCAATAGCAAGCCTGAG+AGG | 0.570639 | 4.4:-3730830 | None:intergenic |
| GTTGGATTTGTACGATGAGG+TGG | 0.581590 | 4.4:-3730239 | None:intergenic |
| TGGCCATGGTGGAACGTGTA+CGG | 0.582344 | 4.4:-3730261 | None:intergenic |
| AATCAACGCAGTGCACACTC+CGG | 0.582408 | 4.4:-3730793 | None:intergenic |
| TCTCTGAGAAACTTACAACT+TGG | 0.583296 | 4.4:+3730995 | MS.gene20145:CDS |
| AGGAAGAGCCTGTGATGGAG+AGG | 0.585551 | 4.4:+3731188 | MS.gene20145:CDS |
| GGCACCTGCGTAGGTGTCGT+TGG | 0.587787 | 4.4:-3731118 | None:intergenic |
| CACTGCGTTGATTCGTATGA+CGG | 0.588289 | 4.4:+3730803 | MS.gene20145:CDS |
| CTGAGGATAATCGTCGTTGG+AGG | 0.595113 | 4.4:-3730324 | None:intergenic |
| CGACGACACCGATTCCGACT+CGG | 0.598832 | 4.4:+3730397 | MS.gene20145:CDS |
| AGAGGACCCGTGATCCGACC+CGG | 0.601883 | 4.4:+3731082 | MS.gene20145:CDS |
| GTTGGTAGGCTACAGAATCC+GGG | 0.603145 | 4.4:-3731100 | None:intergenic |
| TTGCGAGGAAGAGCCTGTGA+TGG | 0.605419 | 4.4:+3731183 | MS.gene20145:CDS |
| TGATTAACCCTACCACGACT+CGG | 0.606063 | 4.4:-3731139 | None:intergenic |
| GCAGGTGCCGAGTCGTGGTA+GGG | 0.610663 | 4.4:+3731132 | MS.gene20145:CDS |
| GAACTGAGGATAATCGTCGT+TGG | 0.611416 | 4.4:-3730327 | None:intergenic |
| CACCGCCGCCATGATGTTAG+GGG | 0.612627 | 4.4:+3730214 | None:intergenic |
| AGAGCCTGTGATGGAGAGGG+TGG | 0.613302 | 4.4:+3731192 | MS.gene20145:CDS |
| AAGACGGAACCAGTTGTCGC+CGG | 0.615571 | 4.4:+3730711 | MS.gene20145:CDS |
| CCACGACTCGGCACCTGCGT+AGG | 0.618584 | 4.4:-3731127 | None:intergenic |
| AAGATTCGGCGATGCGCACG+TGG | 0.619291 | 4.4:+3730485 | MS.gene20145:CDS |
| GAATCCACCGATTCATGACT+CGG | 0.619620 | 4.4:-3730428 | None:intergenic |
| TAGCTCTGTGAATGAAATGG+TGG | 0.623336 | 4.4:+3730970 | MS.gene20145:CDS |
| CCGAGAAAGTATAACTACTC+CGG | 0.623467 | 4.4:+3730572 | MS.gene20145:CDS |
| GGAAGAGCCTGTGATGGAGA+GGG | 0.627453 | 4.4:+3731189 | MS.gene20145:CDS |
| GATTCGTGTGAGTTTGCGCA+TGG | 0.630448 | 4.4:+3730638 | MS.gene20145:CDS |
| CCTACGCAGGTGCCGAGTCG+TGG | 0.632046 | 4.4:+3731127 | MS.gene20145:CDS |
| ATCGGAGTAATCGGAGACAT+CGG | 0.633731 | 4.4:-3730917 | None:intergenic |
| GGCTGAGTACGGTAACGAGA+AGG | 0.636999 | 4.4:-3730683 | None:intergenic |
| GCCAACAATGAACAATCCAA+CGG | 0.640124 | 4.4:+3730280 | MS.gene20145:CDS |
| GGAGTAATCGGAGACATCGG+AGG | 0.641390 | 4.4:-3730914 | None:intergenic |
| TGGCAGGTCACATGACTGGA+CGG | 0.644811 | 4.4:+3730505 | MS.gene20145:CDS |
| CATGGTGGAACGTGTACGGT+TGG | 0.646215 | 4.4:-3730257 | None:intergenic |
| CAACCGTACACGTTCCACCA+TGG | 0.668476 | 4.4:+3730258 | MS.gene20145:CDS |
| TCAACGCAGTGCACACTCCG+GGG | 0.673364 | 4.4:-3730791 | None:intergenic |
| GACATCGGAGGAGACTCCAC+CGG | 0.675579 | 4.4:-3730902 | None:intergenic |
| CCTAGATTCGGGTCTCCCAG+AGG | 0.678542 | 4.4:+3731064 | MS.gene20145:CDS |
| GATCCAGGAGGAGACATGAA+CGG | 0.679198 | 4.4:-3730872 | None:intergenic |
| GAATCTTAAACTCGAACATG+CGG | 0.686731 | 4.4:-3730469 | None:intergenic |
| GCTTCTTGCATGTAGAACTG+AGG | 0.687997 | 4.4:-3730341 | None:intergenic |
| AACAATGAACAATCCAACGG+CGG | 0.692559 | 4.4:+3730283 | MS.gene20145:CDS |
| ACCGGAGAAACCGATCCAGG+AGG | 0.697000 | 4.4:-3730884 | None:intergenic |
| GTAGGCTACAGAATCCGGGT+CGG | 0.700260 | 4.4:-3731096 | None:intergenic |
| AGAACCCACAGATCTTCCCA+AGG | 0.706781 | 4.4:-3730948 | None:intergenic |
| ACGGTTGGATTTGTACGATG+AGG | 0.707900 | 4.4:-3730242 | None:intergenic |
| CCTACCAACGACACCTACGC+AGG | 0.710974 | 4.4:+3731114 | MS.gene20145:CDS |
| TCTTTGGGATCAGTGTTGCG+AGG | 0.716443 | 4.4:+3731168 | MS.gene20145:CDS |
| TATACTTTCTCGGGTCACGG+CGG | 0.737764 | 4.4:-3730562 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GGTTAATCATTTTGATCTTT+GGG | + | chr4.4:3731153-3731172 | MS.gene20145:CDS | 25.0% |
| ATTTGAACATTCCATGAAGA+AGG | - | chr4.4:3731037-3731056 | None:intergenic | 30.0% | |
| TCTTCATGGAATGTTCAAAT+GGG | + | chr4.4:3731037-3731056 | MS.gene20145:CDS | 30.0% | |
| TTCTTCATGGAATGTTCAAA+TGG | + | chr4.4:3731036-3731055 | MS.gene20145:CDS | 30.0% | |
| ! | AGCAAAGAGAACTCTTTTAA+TGG | + | chr4.4:3731256-3731275 | MS.gene20145:CDS | 30.0% |
| !! | AGAGAACTCTTTTAATGGAT+CGG | + | chr4.4:3731261-3731280 | MS.gene20145:CDS | 30.0% |
| !! | GGGTTAATCATTTTGATCTT+TGG | + | chr4.4:3731152-3731171 | MS.gene20145:CDS | 30.0% |
| CAACTTCCTTTACGAAAATC+AGG | - | chr4.4:3730608-3730627 | None:intergenic | 35.0% | |
| GAATCTTAAACTCGAACATG+CGG | - | chr4.4:3730472-3730491 | None:intergenic | 35.0% | |
| GGAATCTGGAAGAGATATAA+GGG | + | chr4.4:3731213-3731232 | MS.gene20145:CDS | 35.0% | |
| TGAAGAAGGTAATGACTTCA+TGG | - | chr4.4:3731023-3731042 | None:intergenic | 35.0% | |
| TGAAGTCATTACCTTCTTCA+TGG | + | chr4.4:3731023-3731042 | MS.gene20145:CDS | 35.0% | |
| TGGAATCTGGAAGAGATATA+AGG | + | chr4.4:3731212-3731231 | MS.gene20145:CDS | 35.0% | |
| ! | CGTTTTCGTTAACATAGTGT+TGG | - | chr4.4:3730379-3730398 | None:intergenic | 35.0% |
| ! | GATTTTTCCGAGTCATGAAT+CGG | + | chr4.4:3730421-3730440 | MS.gene20145:CDS | 35.0% |
| ! | GCATGTTCGAGTTTAAGATT+CGG | + | chr4.4:3730471-3730490 | MS.gene20145:CDS | 35.0% |
| ! | TCTCTGAGAAACTTACAACT+TGG | + | chr4.4:3730995-3731014 | MS.gene20145:CDS | 35.0% |
| !! | GAGAACTCTTTTAATGGATC+GGG | + | chr4.4:3731262-3731281 | MS.gene20145:CDS | 35.0% |
| !! | TTCTAGCTCTGTGAATGAAA+TGG | + | chr4.4:3730967-3730986 | MS.gene20145:CDS | 35.0% |
| !!! | AGTTTGTTTTTTCGCTCACA+CGG | + | chr4.4:3730736-3730755 | MS.gene20145:CDS | 35.0% |
| AAAAATCTCCGAGTCGGAAT+CGG | - | chr4.4:3730408-3730427 | None:intergenic | 40.0% | |
| AACAATGAACAATCCAACGG+CGG | + | chr4.4:3730283-3730302 | MS.gene20145:CDS | 40.0% | |
| AGTTATACTTTCTCGGGTCA+CGG | - | chr4.4:3730568-3730587 | None:intergenic | 40.0% | |
| CCGGAGTAGTTATACTTTCT+CGG | - | chr4.4:3730575-3730594 | None:intergenic | 40.0% | |
| CGGAGTAGTTATACTTTCTC+GGG | - | chr4.4:3730574-3730593 | None:intergenic | 40.0% | |
| CGTAAAGGAAGTTGCAAGAA+AGG | + | chr4.4:3730614-3730633 | MS.gene20145:CDS | 40.0% | |
| GCCAACAATGAACAATCCAA+CGG | + | chr4.4:3730280-3730299 | MS.gene20145:CDS | 40.0% | |
| GTGTGAGCGAAAAAACAAAC+TGG | - | chr4.4:3730737-3730756 | None:intergenic | 40.0% | |
| TAATCGTCGTTGGAGGTTAA+AGG | - | chr4.4:3730320-3730339 | None:intergenic | 40.0% | |
| ! | AAATGGGTTCTCCTAGATTC+GGG | + | chr4.4:3731053-3731072 | MS.gene20145:CDS | 40.0% |
| ! | CAAATGGGTTCTCCTAGATT+CGG | + | chr4.4:3731052-3731071 | MS.gene20145:CDS | 40.0% |
| ! | CCGAGAAAGTATAACTACTC+CGG | + | chr4.4:3730572-3730591 | MS.gene20145:CDS | 40.0% |
| ! | TAGCTCTGTGAATGAAATGG+TGG | + | chr4.4:3730970-3730989 | MS.gene20145:CDS | 40.0% |
| ! | TCGTGTCCTGATTTTCGTAA+AGG | + | chr4.4:3730599-3730618 | MS.gene20145:CDS | 40.0% |
| !! | CTCTTTTAATGGATCGGGTT+CGG | + | chr4.4:3731267-3731286 | MS.gene20145:CDS | 40.0% |
| !! | TCTTTTAATGGATCGGGTTC+GGG | + | chr4.4:3731268-3731287 | MS.gene20145:CDS | 40.0% |
| AAAATCAGGACACGAAGTGC+CGG | - | chr4.4:3730594-3730613 | None:intergenic | 45.0% | |
| ACGGTTGGATTTGTACGATG+AGG | - | chr4.4:3730245-3730264 | None:intergenic | 45.0% | |
| ACTCGGAAAAATCTCCGAGT+CGG | - | chr4.4:3730414-3730433 | None:intergenic | 45.0% | |
| ATCGGAGTAATCGGAGACAT+CGG | - | chr4.4:3730920-3730939 | None:intergenic | 45.0% | |
| GAACTGAGGATAATCGTCGT+TGG | - | chr4.4:3730330-3730349 | None:intergenic | 45.0% | |
| GAGCGAAAAAACAAACTGGC+CGG | - | chr4.4:3730733-3730752 | None:intergenic | 45.0% | |
| GCCGTTGGATTGTTCATTGT+TGG | - | chr4.4:3730284-3730303 | None:intergenic | 45.0% | |
| GCTTCTTGCATGTAGAACTG+AGG | - | chr4.4:3730344-3730363 | None:intergenic | 45.0% | |
| GGATTGTTCATTGTTGGCCA+TGG | - | chr4.4:3730278-3730297 | None:intergenic | 45.0% | |
| GTTGGATTTGTACGATGAGG+TGG | - | chr4.4:3730242-3730261 | None:intergenic | 45.0% | |
| TGATTAACCCTACCACGACT+CGG | - | chr4.4:3731142-3731161 | None:intergenic | 45.0% | |
| TGGTTGAAGATCCGGATGTT+GGG | + | chr4.4:3731302-3731321 | MS.gene20145:CDS | 45.0% | |
| TTGTTCATTGTTGGCCATGG+TGG | - | chr4.4:3730275-3730294 | None:intergenic | 45.0% | |
| ! | CAACTGGTTCCGTCTTTACA+CGG | - | chr4.4:3730707-3730726 | None:intergenic | 45.0% |
| ! | GAACGGAAGAGTTTTCACAC+AGG | - | chr4.4:3730858-3730877 | None:intergenic | 45.0% |
| ! | GAGTGTCCTTTTTCTCATCC+CGG | + | chr4.4:3730527-3730546 | MS.gene20145:CDS | 45.0% |
| ! | TTTTCCGAGTCATGAATCGG+TGG | + | chr4.4:3730424-3730443 | MS.gene20145:CDS | 45.0% |
| !! | CACTGCGTTGATTCGTATGA+CGG | + | chr4.4:3730803-3730822 | MS.gene20145:CDS | 45.0% |
| !! | GAATCCACCGATTCATGACT+CGG | - | chr4.4:3730431-3730450 | None:intergenic | 45.0% |
| !!! | TTGTTTTTTCGCTCACACGG+CGG | + | chr4.4:3730739-3730758 | MS.gene20145:CDS | 45.0% |
| AATCAACGCAGTGCACACTC+CGG | - | chr4.4:3730796-3730815 | None:intergenic | 50.0% | |
| AGAACCCACAGATCTTCCCA+AGG | - | chr4.4:3730951-3730970 | None:intergenic | 50.0% | |
| CGTACTCAGCCGTGTAAAGA+CGG | + | chr4.4:3730695-3730714 | MS.gene20145:CDS | 50.0% | |
| CGTCTTTACACGGCTGAGTA+CGG | - | chr4.4:3730697-3730716 | None:intergenic | 50.0% | |
| CTCCGATTACTCCGATGACT+CGG | + | chr4.4:3730924-3730943 | MS.gene20145:CDS | 50.0% | |
| CTGAGGATAATCGTCGTTGG+AGG | - | chr4.4:3730327-3730346 | None:intergenic | 50.0% | |
| GACCGAGTCATCGGAGTAAT+CGG | - | chr4.4:3730929-3730948 | None:intergenic | 50.0% | |
| GACTCAATAGCAAGCCTGAG+AGG | - | chr4.4:3730833-3730852 | None:intergenic | 50.0% | |
| GATCCAGGAGGAGACATGAA+CGG | - | chr4.4:3730875-3730894 | None:intergenic | 50.0% | |
| GATTCGTGTGAGTTTGCGCA+TGG | + | chr4.4:3730638-3730657 | MS.gene20145:CDS | 50.0% | |
| GGGTGAAGTGGTTGAAGATC+CGG | + | chr4.4:3731294-3731313 | MS.gene20145:CDS | 50.0% | |
| GGTGAAAAAATCTCCGCCGT+TGG | - | chr4.4:3730299-3730318 | None:intergenic | 50.0% | |
| GTGGTTGAAGATCCGGATGT+TGG | + | chr4.4:3731301-3731320 | MS.gene20145:CDS | 50.0% | |
| GTTCATGTCTCCTCCTGGAT+CGG | + | chr4.4:3730874-3730893 | MS.gene20145:CDS | 50.0% | |
| TATACTTTCTCGGGTCACGG+CGG | - | chr4.4:3730565-3730584 | None:intergenic | 50.0% | |
| TGAAGATCCGGATGTTGGGT+GGG | + | chr4.4:3731306-3731325 | MS.gene20145:CDS | 50.0% | |
| TTCTCGCCGGGATGAGAAAA+AGG | - | chr4.4:3730536-3730555 | None:intergenic | 50.0% | |
| TTGAAGATCCGGATGTTGGG+TGG | + | chr4.4:3731305-3731324 | MS.gene20145:CDS | 50.0% | |
| ! | CGTTGGTAGGCTACAGAATC+CGG | - | chr4.4:3731104-3731123 | None:intergenic | 50.0% |
| ! | GTTGGTAGGCTACAGAATCC+GGG | - | chr4.4:3731103-3731122 | None:intergenic | 50.0% |
| ! | TAATGGATCGGGTTCGGGTT+CGG | + | chr4.4:3731273-3731292 | MS.gene20145:CDS | 50.0% |
| !! | TCTTTGGGATCAGTGTTGCG+AGG | + | chr4.4:3731168-3731187 | MS.gene20145:CDS | 50.0% |
| AAGACGGAACCAGTTGTCGC+CGG | + | chr4.4:3730711-3730730 | MS.gene20145:CDS | 55.0% | |
| ACAGAATCCGGGTCGGATCA+CGG | - | chr4.4:3731092-3731111 | None:intergenic | 55.0% | |
| ATCAACGCAGTGCACACTCC+GGG | - | chr4.4:3730795-3730814 | None:intergenic | 55.0% | |
| CAACCGTACACGTTCCACCA+TGG | + | chr4.4:3730258-3730277 | MS.gene20145:CDS | 55.0% | |
| CGGTCCTTGGGAAGATCTGT+GGG | + | chr4.4:3730944-3730963 | MS.gene20145:CDS | 55.0% | |
| CGTATGACGGTTCTCCTCTC+AGG | + | chr4.4:3730816-3730835 | MS.gene20145:CDS | 55.0% | |
| CTTCCCAAGGACCGAGTCAT+CGG | - | chr4.4:3730938-3730957 | None:intergenic | 55.0% | |
| CTTCCGTTCATGTCTCCTCC+TGG | + | chr4.4:3730869-3730888 | MS.gene20145:CDS | 55.0% | |
| GAGCTGGTGAGCCCTTTCTT+GGG | + | chr4.4:3731334-3731353 | MS.gene20145:CDS | 55.0% | |
| GATTCCACCCTCTCCATCAC+AGG | - | chr4.4:3731199-3731218 | None:intergenic | 55.0% | |
| GGAGTAATCGGAGACATCGG+AGG | - | chr4.4:3730917-3730936 | None:intergenic | 55.0% | |
| GGCTGAGTACGGTAACGAGA+AGG | - | chr4.4:3730686-3730705 | None:intergenic | 55.0% | |
| GTAGGCTACAGAATCCGGGT+CGG | - | chr4.4:3731099-3731118 | None:intergenic | 55.0% | |
| TCACACGGCGGAGCAACTTA+GGG | + | chr4.4:3730751-3730770 | MS.gene20145:CDS | 55.0% | |
| TCCGAAACCCACCCAACATC+CGG | - | chr4.4:3731316-3731335 | None:intergenic | 55.0% | |
| TCGGTCCTTGGGAAGATCTG+TGG | + | chr4.4:3730943-3730962 | MS.gene20145:CDS | 55.0% | |
| TGGCAGGTCACATGACTGGA+CGG | + | chr4.4:3730505-3730524 | MS.gene20145:CDS | 55.0% | |
| TTGCGAGGAAGAGCCTGTGA+TGG | + | chr4.4:3731183-3731202 | MS.gene20145:CDS | 55.0% | |
| ! | AATGGATCGGGTTCGGGTTC+GGG | + | chr4.4:3731274-3731293 | MS.gene20145:CDS | 55.0% |
| ! | AGGAAGAGCCTGTGATGGAG+AGG | + | chr4.4:3731188-3731207 | MS.gene20145:CDS | 55.0% |
| ! | CATGGTGGAACGTGTACGGT+TGG | - | chr4.4:3730260-3730279 | None:intergenic | 55.0% |
| ! | GGAAGAGCCTGTGATGGAGA+GGG | + | chr4.4:3731189-3731208 | MS.gene20145:CDS | 55.0% |
| ! | GTGATGGAGAGGGTGGAATC+TGG | + | chr4.4:3731199-3731218 | MS.gene20145:CDS | 55.0% |
| ! | TCCGGATGTTGGGTGGGTTT+CGG | + | chr4.4:3731312-3731331 | MS.gene20145:CDS | 55.0% |
| ! | TCCTCCTGGATCGGTTTCTC+CGG | + | chr4.4:3730883-3730902 | MS.gene20145:CDS | 55.0% |
| ! | TGGCCATGGTGGAACGTGTA+CGG | - | chr4.4:3730264-3730283 | None:intergenic | 55.0% |
| !! | ACTCCGATGACTCGGTCCTT+GGG | + | chr4.4:3730932-3730951 | MS.gene20145:CDS | 55.0% |
| !! | TACTCCGATGACTCGGTCCT+TGG | + | chr4.4:3730931-3730950 | MS.gene20145:CDS | 55.0% |
| AAGATTCGGCGATGCGCACG+TGG | + | chr4.4:3730485-3730504 | MS.gene20145:CDS | 60.0% | |
| ACAAACTGGCCGGCGACAAC+TGG | - | chr4.4:3730723-3730742 | None:intergenic | 60.0% | |
| ACCGGAGAAACCGATCCAGG+AGG | - | chr4.4:3730887-3730906 | None:intergenic | 60.0% | |
| CACGTGGCAGGTCACATGAC+TGG | + | chr4.4:3730501-3730520 | MS.gene20145:CDS | 60.0% | |
| CAGAATCCGGGTCGGATCAC+GGG | - | chr4.4:3731091-3731110 | None:intergenic | 60.0% | |
| CCTACCAACGACACCTACGC+AGG | + | chr4.4:3731114-3731133 | MS.gene20145:CDS | 60.0% | |
| CCTAGATTCGGGTCTCCCAG+AGG | + | chr4.4:3731064-3731083 | MS.gene20145:CDS | 60.0% | |
| CGCATGGTGTGTTCGAGTGC+TGG | + | chr4.4:3730654-3730673 | MS.gene20145:CDS | 60.0% | |
| CTCACACGGCGGAGCAACTT+AGG | + | chr4.4:3730750-3730769 | MS.gene20145:CDS | 60.0% | |
| CTCCGACTCAACAGAGTCCC+CGG | + | chr4.4:3730774-3730793 | MS.gene20145:CDS | 60.0% | |
| CTCCGGGGACTCTGTTGAGT+CGG | - | chr4.4:3730779-3730798 | None:intergenic | 60.0% | |
| GACATCGGAGGAGACTCCAC+CGG | - | chr4.4:3730905-3730924 | None:intergenic | 60.0% | |
| GGAGCTGGTGAGCCCTTTCT+TGG | + | chr4.4:3731333-3731352 | MS.gene20145:CDS | 60.0% | |
| TCAACGCAGTGCACACTCCG+GGG | - | chr4.4:3730794-3730813 | None:intergenic | 60.0% | |
| TCCACCGGAGAAACCGATCC+AGG | - | chr4.4:3730890-3730909 | None:intergenic | 60.0% | |
| ! | AGAGCCTGTGATGGAGAGGG+TGG | + | chr4.4:3731192-3731211 | MS.gene20145:CDS | 60.0% |
| ! | CCTCTGGGAGACCCGAATCT+AGG | - | chr4.4:3731067-3731086 | None:intergenic | 60.0% |
| ! | TCCTGGATCGGTTTCTCCGG+TGG | + | chr4.4:3730886-3730905 | MS.gene20145:CDS | 60.0% |
| ! | TGTTGGGTGGGTTTCGGAGC+TGG | + | chr4.4:3731318-3731337 | MS.gene20145:CDS | 60.0% |
| !! | CCTGCGTAGGTGTCGTTGGT+AGG | - | chr4.4:3731117-3731136 | None:intergenic | 60.0% |
| !! | CGACGACACCGATTCCGACT+CGG | + | chr4.4:3730397-3730416 | MS.gene20145:CDS | 60.0% |
| AGAGGACCCGTGATCCGACC+CGG | + | chr4.4:3731082-3731101 | MS.gene20145:CDS | 65.0% | |
| GGTCGGATCACGGGTCCTCT+GGG | - | chr4.4:3731082-3731101 | None:intergenic | 65.0% | |
| ! | GGCACCTGCGTAGGTGTCGT+TGG | - | chr4.4:3731121-3731140 | None:intergenic | 65.0% |
| ! | GGGTTCGGGTTCGGGTGAAG+TGG | + | chr4.4:3731282-3731301 | MS.gene20145:CDS | 65.0% |
| !! | GCAGGTGCCGAGTCGTGGTA+GGG | + | chr4.4:3731132-3731151 | MS.gene20145:CDS | 65.0% |
| ACGGCGGCGAGCTTTCTCGC+CGG | - | chr4.4:3730549-3730568 | None:intergenic | 70.0% | |
| GGGTCGGATCACGGGTCCTC+TGG | - | chr4.4:3731083-3731102 | None:intergenic | 70.0% | |
| TTCGGCGATGCGCACGTGGC+AGG | + | chr4.4:3730489-3730508 | MS.gene20145:CDS | 70.0% | |
| ! | CCACGACTCGGCACCTGCGT+AGG | - | chr4.4:3731130-3731149 | None:intergenic | 70.0% |
| !! | CCTACGCAGGTGCCGAGTCG+TGG | + | chr4.4:3731127-3731146 | MS.gene20145:CDS | 70.0% |
| !! | CGCAGGTGCCGAGTCGTGGT+AGG | + | chr4.4:3731131-3731150 | MS.gene20145:CDS | 70.0% |
| CGGCGGCGAGCTTTCTCGCC+GGG | - | chr4.4:3730548-3730567 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 3730224 | 3731363 | 3730224 | ID=MS.gene20145 |
| chr4.4 | mRNA | 3730224 | 3731363 | 3730224 | ID=MS.gene20145.t1;Parent=MS.gene20145 |
| chr4.4 | exon | 3730224 | 3731363 | 3730224 | ID=MS.gene20145.t1.exon1;Parent=MS.gene20145.t1 |
| chr4.4 | CDS | 3730224 | 3731363 | 3730224 | ID=cds.MS.gene20145.t1;Parent=MS.gene20145.t1 |
| Gene Sequence |
| Protein sequence |
