Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20189.t1 | XP_024628143.1 | 91.5 | 578 | 46 | 1 | 1 | 575 | 1 | 578 | 4.70E-305 | 1056.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20189.t1 | Q5SVZ6 | 21.8 | 458 | 323 | 9 | 65 | 503 | 544 | 985 | 1.0e-21 | 106.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20189.t1 | A0A396GSM2 | 91.5 | 578 | 46 | 1 | 1 | 575 | 1 | 578 | 3.4e-305 | 1056.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056050 | MS.gene20189 | 0.810743 | 9.90E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20189.t1 | MTR_7g025210 | 55.600 | 250 | 107 | 2 | 330 | 575 | 83 | 332 | 8.74e-84 | 269 |
| MS.gene20189.t1 | MTR_8g032820 | 32.751 | 229 | 149 | 3 | 350 | 575 | 104 | 330 | 1.41e-32 | 130 |
| MS.gene20189.t1 | MTR_2g049710 | 26.804 | 291 | 156 | 5 | 239 | 526 | 1 | 237 | 1.22e-24 | 105 |
| MS.gene20189.t1 | MTR_1g078060 | 38.406 | 138 | 81 | 3 | 431 | 567 | 1 | 135 | 7.37e-21 | 90.1 |
| MS.gene20189.t1 | MTR_4g109010 | 29.004 | 231 | 154 | 5 | 317 | 542 | 921 | 1146 | 8.54e-20 | 94.7 |
| MS.gene20189.t1 | MTR_8g467910 | 30.070 | 143 | 98 | 2 | 431 | 572 | 1 | 142 | 6.93e-16 | 75.5 |
| MS.gene20189.t1 | MTR_1g054530 | 30.702 | 114 | 76 | 1 | 324 | 434 | 139 | 252 | 8.31e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20189.t1 | AT1G19260 | 32.136 | 529 | 341 | 7 | 56 | 575 | 159 | 678 | 7.95e-82 | 275 |
| MS.gene20189.t1 | AT3G29763 | 32.365 | 482 | 311 | 6 | 62 | 532 | 27 | 504 | 1.91e-77 | 256 |
| MS.gene20189.t1 | AT1G41920 | 31.225 | 506 | 316 | 9 | 82 | 568 | 4 | 496 | 3.27e-69 | 234 |
| MS.gene20189.t1 | AT3G29765 | 32.207 | 444 | 287 | 6 | 141 | 575 | 7 | 445 | 1.89e-68 | 233 |
| MS.gene20189.t1 | AT4G09660 | 30.539 | 501 | 314 | 8 | 84 | 575 | 147 | 622 | 2.08e-66 | 231 |
| MS.gene20189.t1 | AT3G29450 | 32.374 | 417 | 253 | 7 | 88 | 498 | 93 | 486 | 1.82e-53 | 192 |
| MS.gene20189.t1 | AT2G06541 | 27.907 | 516 | 261 | 10 | 64 | 575 | 94 | 502 | 7.03e-48 | 178 |
| MS.gene20189.t1 | AT2G06541 | 33.981 | 309 | 182 | 7 | 64 | 368 | 94 | 384 | 2.07e-40 | 156 |
| MS.gene20189.t1 | AT3G31402 | 45.977 | 87 | 44 | 2 | 151 | 235 | 86 | 171 | 4.08e-13 | 72.0 |
| MS.gene20189.t1 | AT3G29794 | 21.065 | 413 | 275 | 12 | 119 | 501 | 3 | 394 | 7.03e-13 | 71.2 |
| MS.gene20189.t1 | AT1G42710 | 45.312 | 64 | 33 | 1 | 179 | 240 | 120 | 183 | 1.20e-11 | 65.1 |
Find 82 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAACAACTATGCAAAATT+TGG | 0.197879 | 4.4:-4193732 | None:intergenic |
| GCCAAAATTGTGCTGGAAAA+TGG | 0.235298 | 4.4:+4193608 | MS.gene20189:CDS |
| ATCATACAGTGGCAGTTATA+AGG | 0.256392 | 4.4:+4196965 | MS.gene20189:intron |
| TGCTATTCAACTCTTGTAAT+AGG | 0.276951 | 4.4:-4194720 | None:intergenic |
| CCAAACATGTACATAATTCT+TGG | 0.287468 | 4.4:-4194960 | None:intergenic |
| CTATTGTGATGTGATCCTTT+TGG | 0.337745 | 4.4:-4194654 | None:intergenic |
| GCGTAAATTTCTTCCTCTAA+TGG | 0.338534 | 4.4:-4193869 | None:intergenic |
| AGTCATATTCGCGAGGAAAT+TGG | 0.341504 | 4.4:+4193704 | MS.gene20189:CDS |
| TAAATCCTTCTCATCTTGTA+TGG | 0.365519 | 4.4:-4197191 | None:intergenic |
| GAAGCACACCTGGAAAGATA+TGG | 0.374658 | 4.4:-4193632 | None:intergenic |
| GACAAAGGGGCAAATCAAAT+TGG | 0.382720 | 4.4:+4194211 | MS.gene20189:CDS |
| ACTTGGATTCTTTCAAACTT+TGG | 0.395284 | 4.4:+4197008 | MS.gene20189:CDS |
| AAAATGGCCCATATCTTTCC+AGG | 0.398649 | 4.4:+4193624 | MS.gene20189:CDS |
| TAAAGACTTTGAGCCATTAG+AGG | 0.401279 | 4.4:+4193856 | MS.gene20189:CDS |
| GTTAACTCTATGCTCTGCTT+TGG | 0.406937 | 4.4:+4194768 | MS.gene20189:CDS |
| CTTGATGTTTCTAACATTCG+TGG | 0.409748 | 4.4:+4193911 | MS.gene20189:CDS |
| TCATACAGTGGCAGTTATAA+GGG | 0.410602 | 4.4:+4196966 | MS.gene20189:intron |
| GCATTTGATGAGAGAAATCA+TGG | 0.427491 | 4.4:+4194423 | MS.gene20189:CDS |
| TCCCATGGATTTCAATAAGC+AGG | 0.442940 | 4.4:+4194855 | MS.gene20189:CDS |
| CGAACTACGTCCTTGACATA+TGG | 0.451459 | 4.4:-4194487 | None:intergenic |
| ACATAAGTTGCTACCTGCCT+TGG | 0.451661 | 4.4:+4194036 | MS.gene20189:CDS |
| CTGTGCAAAGCATGATATTG+AGG | 0.459529 | 4.4:+4194582 | MS.gene20189:CDS |
| CTTCAAAACATTAGACAAGA+TGG | 0.463514 | 4.4:+4194526 | MS.gene20189:CDS |
| CAATGAATGTGGTATGCATA+AGG | 0.465640 | 4.4:-4194007 | None:intergenic |
| ATGATACTGAACACAATACT+TGG | 0.471136 | 4.4:+4196991 | MS.gene20189:CDS |
| AAAACATTAGACAAGATGGT+TGG | 0.471861 | 4.4:+4194530 | MS.gene20189:CDS |
| GTTTCTAACATTCGTGGTCA+AGG | 0.476231 | 4.4:+4193917 | MS.gene20189:CDS |
| GCTTCAAGTTGCTGAAGATA+AGG | 0.482406 | 4.4:+4196163 | MS.gene20189:CDS |
| TGGCAGCTAGTGACTCATCA+TGG | 0.482901 | 4.4:-4194147 | None:intergenic |
| GAGTTGAATATACTTGTTTG+AGG | 0.483136 | 4.4:+4194245 | MS.gene20189:CDS |
| GGCAGCTAGTGACTCATCAT+GGG | 0.483999 | 4.4:-4194146 | None:intergenic |
| AAACATTAGACAAGATGGTT+GGG | 0.487683 | 4.4:+4194531 | MS.gene20189:CDS |
| AGATCAATGAAATTGACAAA+GGG | 0.499254 | 4.4:+4194197 | MS.gene20189:CDS |
| TGGACCACAAAAGGAACAAA+TGG | 0.499352 | 4.4:+4193766 | MS.gene20189:CDS |
| TGAATTTGCCAAAATTGTGC+TGG | 0.501015 | 4.4:+4193601 | MS.gene20189:CDS |
| AGTTTGTGATGGACCACAAA+AGG | 0.503097 | 4.4:+4193757 | MS.gene20189:CDS |
| CTCCTGCTTATTGAAATCCA+TGG | 0.516767 | 4.4:-4194857 | None:intergenic |
| TCCTGCTTATTGAAATCCAT+GGG | 0.522733 | 4.4:-4194856 | None:intergenic |
| TACTCGCTAACAGATATGCT+TGG | 0.527106 | 4.4:+4196113 | MS.gene20189:intron |
| AAGGTTCCTAGAGTTGCATA+TGG | 0.531308 | 4.4:+4193383 | MS.gene20189:CDS |
| TAGAGTTGCATATGGTGAGT+TGG | 0.533912 | 4.4:+4193391 | MS.gene20189:CDS |
| ATGGCACTCTCGTCACCAAA+AGG | 0.537609 | 4.4:+4194639 | MS.gene20189:CDS |
| TGCCATGGTCTTTCTACATA+CGG | 0.538038 | 4.4:-4194622 | None:intergenic |
| GTTGTTGATGGAGTTTGTGA+TGG | 0.540042 | 4.4:+4193746 | MS.gene20189:CDS |
| TCCCTTGGCAGACAAGTTCG+CGG | 0.541483 | 4.4:+4197117 | MS.gene20189:intron |
| ATATGCAACTCTAGGAACCT+TGG | 0.544514 | 4.4:-4193381 | None:intergenic |
| AAGCACACCTGGAAAGATAT+GGG | 0.544686 | 4.4:-4193631 | None:intergenic |
| TTATCTTCAGCAACTTGAAG+CGG | 0.548477 | 4.4:-4196161 | None:intergenic |
| GAGTTAACAACTCCATTGCT+TGG | 0.549577 | 4.4:-4194753 | None:intergenic |
| GGGGTCTGTTTCCAAGTCTG+AGG | 0.550889 | 4.4:+4197165 | MS.gene20189:CDS |
| ACATACGGAGCATTGAATTG+AGG | 0.551359 | 4.4:-4194607 | None:intergenic |
| CTTCAGCAACTTGAAGCGGA+AGG | 0.553522 | 4.4:-4196157 | None:intergenic |
| ATGCTCTGCTTTGGTTCCTG+AGG | 0.553621 | 4.4:+4194777 | MS.gene20189:CDS |
| AAAGCTTTGCAACTATCCTC+AGG | 0.554011 | 4.4:-4194793 | None:intergenic |
| ATGTGCGATTTCATTTAACT+TGG | 0.554369 | 4.4:-4194167 | None:intergenic |
| TTGAGGATGACATCTCATCT+AGG | 0.558463 | 4.4:+4196186 | MS.gene20189:CDS |
| GACGATGCACAAACCAAGGC+AGG | 0.559009 | 4.4:-4194049 | None:intergenic |
| TTGTATGGACTCCTCAGACT+TGG | 0.559896 | 4.4:-4197176 | None:intergenic |
| TTCAGCAACTTGAAGCGGAA+GGG | 0.561068 | 4.4:-4196156 | None:intergenic |
| AAATTGAAATGAAGCACACC+TGG | 0.565676 | 4.4:-4193642 | None:intergenic |
| TTTCTAACATTCGTGGTCAA+GGG | 0.566104 | 4.4:+4193918 | MS.gene20189:CDS |
| AGTTGCTGAAGATAAGGTTG+AGG | 0.566335 | 4.4:+4196169 | MS.gene20189:CDS |
| GAGATCAATGAAATTGACAA+AGG | 0.566860 | 4.4:+4194196 | MS.gene20189:CDS |
| AACTCACCATATGCAACTCT+AGG | 0.573982 | 4.4:-4193389 | None:intergenic |
| CAAGTTTAGTGACCAAGCAA+TGG | 0.585461 | 4.4:+4194741 | MS.gene20189:CDS |
| GGAGTCCATACAAGATGAGA+AGG | 0.590041 | 4.4:+4197186 | MS.gene20189:CDS |
| TTCTGACGATGCACAAACCA+AGG | 0.602915 | 4.4:-4194053 | None:intergenic |
| CTTGGCGAAGAAGAATCTGA+TGG | 0.605600 | 4.4:+4196131 | MS.gene20189:CDS |
| GACATTGTAGTTGCACAGCT+CGG | 0.611449 | 4.4:-4194465 | None:intergenic |
| TATGTTCAAAACAATGAATG+TGG | 0.615071 | 4.4:-4194018 | None:intergenic |
| GATCAATGAAATTGACAAAG+GGG | 0.624164 | 4.4:+4194198 | MS.gene20189:CDS |
| GATCAATACAAACTCAAATG+TGG | 0.630350 | 4.4:-4194398 | None:intergenic |
| GCAGCTAGTGACTCATCATG+GGG | 0.632804 | 4.4:-4194145 | None:intergenic |
| CCATTGATAGAAAAGCATCT+CGG | 0.641420 | 4.4:-4193553 | None:intergenic |
| CTCCGTATGTAGAAAGACCA+TGG | 0.647087 | 4.4:+4194620 | MS.gene20189:CDS |
| ACTACAATGTCCATATGTCA+AGG | 0.651724 | 4.4:+4194477 | MS.gene20189:CDS |
| AGTCAAAAGTCATATTCGCG+AGG | 0.662257 | 4.4:+4193697 | MS.gene20189:CDS |
| CATTTGATGAGAGAAATCAT+GGG | 0.667572 | 4.4:+4194424 | MS.gene20189:CDS |
| GGGTCAACTTATTGTCAAAG+TGG | 0.668278 | 4.4:+4194346 | MS.gene20189:CDS |
| ATTCGTGGTCAAGGGTACGA+TGG | 0.669576 | 4.4:+4193926 | MS.gene20189:CDS |
| ATTTGATGAGAGAAATCATG+GGG | 0.682250 | 4.4:+4194425 | MS.gene20189:CDS |
| CTAGCGATATGAGAGAACAA+TGG | 0.690780 | 4.4:+4193951 | MS.gene20189:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTACAAGATAATTATTA+AGG | + | chr4.4:4195480-4195499 | MS.gene20189:intron | 10.0% |
| !! | AATTTCATCATGAAAAATAA+AGG | + | chr4.4:4196081-4196100 | MS.gene20189:intron | 15.0% |
| !! | ACAAATTATAAACTCATAAA+AGG | - | chr4.4:4196395-4196414 | None:intergenic | 15.0% |
| !! | ATATATTTATTTATTGCTAC+AGG | + | chr4.4:4196809-4196828 | MS.gene20189:intron | 15.0% |
| !! | TACTTTAATTATATTTGGTA+TGG | + | chr4.4:4196905-4196924 | MS.gene20189:intron | 15.0% |
| !! | AAAATTTCTTAATTGCTGAT+GGG | + | chr4.4:4195404-4195423 | MS.gene20189:intron | 20.0% |
| !! | AAACAAAGAGTAATGAAATT+TGG | + | chr4.4:4197052-4197071 | MS.gene20189:intron | 20.0% |
| !! | AATGTAAATTAGAATGCTAT+CGG | - | chr4.4:4195142-4195161 | None:intergenic | 20.0% |
| !! | GTCTAAATTAACAAAAAGTA+TGG | - | chr4.4:4195743-4195762 | None:intergenic | 20.0% |
| !!! | ATAGTTTGATAGTTTAAAAC+AGG | - | chr4.4:4196640-4196659 | None:intergenic | 20.0% |
| !!! | TAGTTTGATAGTTTAAAACA+GGG | - | chr4.4:4196639-4196658 | None:intergenic | 20.0% |
| !!! | TGAATATTGCAGTTTTTTTT+TGG | + | chr4.4:4196024-4196043 | MS.gene20189:intron | 20.0% |
| !!! | TTGAGATTTGTTGATAAAAA+TGG | + | chr4.4:4193797-4193816 | MS.gene20189:CDS | 20.0% |
| !!! | TTTTCATTTTCTTCAACTTT+CGG | - | chr4.4:4193353-4193372 | None:intergenic | 20.0% |
| ! | AAATGAAAAACAACTTTCCA+AGG | + | chr4.4:4193364-4193383 | MS.gene20189:CDS | 25.0% |
| ! | AAATGAAATGTCACAAAGAA+AGG | - | chr4.4:4196770-4196789 | None:intergenic | 25.0% |
| ! | AATTAGCAAATGAGTCAAAT+GGG | - | chr4.4:4196307-4196326 | None:intergenic | 25.0% |
| ! | AGATCAATGAAATTGACAAA+GGG | + | chr4.4:4194197-4194216 | MS.gene20189:CDS | 25.0% |
| ! | ATCAACAACTATGCAAAATT+TGG | - | chr4.4:4193735-4193754 | None:intergenic | 25.0% |
| ! | CATTCTAATTTACATTGAGA+AGG | + | chr4.4:4195146-4195165 | MS.gene20189:intron | 25.0% |
| ! | GAAAATTTCTTAATTGCTGA+TGG | + | chr4.4:4195403-4195422 | MS.gene20189:intron | 25.0% |
| ! | GTTAGCAAAATCAAAATGTA+TGG | + | chr4.4:4196049-4196068 | MS.gene20189:intron | 25.0% |
| ! | TAATTAGCAAATGAGTCAAA+TGG | - | chr4.4:4196308-4196327 | None:intergenic | 25.0% |
| ! | TATGTTCAAAACAATGAATG+TGG | - | chr4.4:4194021-4194040 | None:intergenic | 25.0% |
| ! | TATTCAAAACAGAATCATCA+AGG | + | chr4.4:4196441-4196460 | MS.gene20189:intron | 25.0% |
| ! | TCAATCAAACATAATCAATG+AGG | - | chr4.4:4195831-4195850 | None:intergenic | 25.0% |
| ! | TTGTACAATATAAAGTGAGA+TGG | + | chr4.4:4196938-4196957 | MS.gene20189:intron | 25.0% |
| !! | AAATTTTGCATAGTTGTTGA+TGG | + | chr4.4:4193734-4193753 | MS.gene20189:CDS | 25.0% |
| !! | TTTCATTTTCTTCAACTTTC+GGG | - | chr4.4:4193352-4193371 | None:intergenic | 25.0% |
| !!! | AAAATGGTTTTATACAAGAG+CGG | + | chr4.4:4193813-4193832 | MS.gene20189:CDS | 25.0% |
| !!! | AAATCGATTCTTTTTTCAAG+AGG | + | chr4.4:4193261-4193280 | MS.gene20189:CDS | 25.0% |
| !!! | CAGTGTGTTATTAGTTTTAT+CGG | + | chr4.4:4195776-4195795 | MS.gene20189:intron | 25.0% |
| !!! | GGTTCATTTGTTTTAGAATA+AGG | + | chr4.4:4197029-4197048 | MS.gene20189:intron | 25.0% |
| !!! | TTATTAGTTTTATCGGAAGT+CGG | + | chr4.4:4195783-4195802 | MS.gene20189:intron | 25.0% |
| AAAACATTAGACAAGATGGT+TGG | + | chr4.4:4194530-4194549 | MS.gene20189:CDS | 30.0% | |
| AAACATTAGACAAGATGGTT+GGG | + | chr4.4:4194531-4194550 | MS.gene20189:CDS | 30.0% | |
| AACTGACATTATTCCTCAAA+AGG | - | chr4.4:4196492-4196511 | None:intergenic | 30.0% | |
| ACTTGGATTCTTTCAAACTT+TGG | + | chr4.4:4197008-4197027 | MS.gene20189:CDS | 30.0% | |
| ATGATACTGAACACAATACT+TGG | + | chr4.4:4196991-4197010 | MS.gene20189:CDS | 30.0% | |
| ATGTGCGATTTCATTTAACT+TGG | - | chr4.4:4194170-4194189 | None:intergenic | 30.0% | |
| ATTTGATGAGAGAAATCATG+GGG | + | chr4.4:4194425-4194444 | MS.gene20189:CDS | 30.0% | |
| CATTGCTGAAAAAGATCTTT+CGG | - | chr4.4:4195070-4195089 | None:intergenic | 30.0% | |
| CATTTGATGAGAGAAATCAT+GGG | + | chr4.4:4194424-4194443 | MS.gene20189:CDS | 30.0% | |
| CCAAACATGTACATAATTCT+TGG | - | chr4.4:4194963-4194982 | None:intergenic | 30.0% | |
| CCAAGAATTATGTACATGTT+TGG | + | chr4.4:4194960-4194979 | MS.gene20189:intron | 30.0% | |
| CTGCTCTACATAATTAATCA+TGG | - | chr4.4:4195993-4196012 | None:intergenic | 30.0% | |
| CTTCAAAACATTAGACAAGA+TGG | + | chr4.4:4194526-4194545 | MS.gene20189:CDS | 30.0% | |
| GAGATCAATGAAATTGACAA+AGG | + | chr4.4:4194196-4194215 | MS.gene20189:CDS | 30.0% | |
| GAGTTGAATATACTTGTTTG+AGG | + | chr4.4:4194245-4194264 | MS.gene20189:CDS | 30.0% | |
| GATCAATACAAACTCAAATG+TGG | - | chr4.4:4194401-4194420 | None:intergenic | 30.0% | |
| GATCAATGAAATTGACAAAG+GGG | + | chr4.4:4194198-4194217 | MS.gene20189:CDS | 30.0% | |
| GATCCTAAATGAGAAAACAT+GGG | - | chr4.4:4195879-4195898 | None:intergenic | 30.0% | |
| TAAATCCTTCTCATCTTGTA+TGG | - | chr4.4:4197194-4197213 | None:intergenic | 30.0% | |
| TCAATGAAATATGTGATGCA+CGG | - | chr4.4:4195698-4195717 | None:intergenic | 30.0% | |
| TGATCCTAAATGAGAAAACA+TGG | - | chr4.4:4195880-4195899 | None:intergenic | 30.0% | |
| TGCTATTCAACTCTTGTAAT+AGG | - | chr4.4:4194723-4194742 | None:intergenic | 30.0% | |
| TGTAGAAAAATGTTATCCCA+TGG | + | chr4.4:4194840-4194859 | MS.gene20189:CDS | 30.0% | |
| TTCATGAATCACTGCATATT+AGG | + | chr4.4:4195955-4195974 | MS.gene20189:intron | 30.0% | |
| TTTGTGACATTTCATTTCAG+CGG | + | chr4.4:4196773-4196792 | MS.gene20189:intron | 30.0% | |
| !! | CTGTTTGGTGTTTAATACAT+TGG | - | chr4.4:4196694-4196713 | None:intergenic | 30.0% |
| !! | TTCTGTTTTGAATAAATCCG+AGG | - | chr4.4:4196435-4196454 | None:intergenic | 30.0% |
| !! | TTGAAAAACTTGCTGATGAT+GGG | + | chr4.4:4194326-4194345 | MS.gene20189:CDS | 30.0% |
| !!! | AAGGTTTTGAACAACCATTT+AGG | + | chr4.4:4195667-4195686 | MS.gene20189:intron | 30.0% |
| !!! | ATATCCTTTTTTTTGTGCCT+CGG | + | chr4.4:4196415-4196434 | MS.gene20189:intron | 30.0% |
| AAAACAGAATCATCAAGGCA+TGG | + | chr4.4:4196446-4196465 | MS.gene20189:intron | 35.0% | |
| AAATCCGAGGCACAAAAAAA+AGG | - | chr4.4:4196422-4196441 | None:intergenic | 35.0% | |
| AAATGTCACAAAGAAAGGTG+AGG | - | chr4.4:4196765-4196784 | None:intergenic | 35.0% | |
| AAATTGAAATGAAGCACACC+TGG | - | chr4.4:4193645-4193664 | None:intergenic | 35.0% | |
| ACTACAATGTCCATATGTCA+AGG | + | chr4.4:4194477-4194496 | MS.gene20189:CDS | 35.0% | |
| AGACTATGTTGAGAAACATG+AGG | + | chr4.4:4195100-4195119 | MS.gene20189:intron | 35.0% | |
| ATCATACAGTGGCAGTTATA+AGG | + | chr4.4:4196965-4196984 | MS.gene20189:intron | 35.0% | |
| CAATGAAATATGTGATGCAC+GGG | - | chr4.4:4195697-4195716 | None:intergenic | 35.0% | |
| CAATGAATGTGGTATGCATA+AGG | - | chr4.4:4194010-4194029 | None:intergenic | 35.0% | |
| CATATTTCATTGAGCACGTA+AGG | + | chr4.4:4195705-4195724 | MS.gene20189:intron | 35.0% | |
| CATTTGCTTATGTAAGACTG+TGG | + | chr4.4:4196737-4196756 | MS.gene20189:intron | 35.0% | |
| CTGCATATGATCTTACACAT+AGG | + | chr4.4:4195912-4195931 | MS.gene20189:intron | 35.0% | |
| GAATTATGTACATGTTTGGC+AGG | + | chr4.4:4194964-4194983 | MS.gene20189:intron | 35.0% | |
| GCATTTGATGAGAGAAATCA+TGG | + | chr4.4:4194423-4194442 | MS.gene20189:CDS | 35.0% | |
| GCGTAAATTTCTTCCTCTAA+TGG | - | chr4.4:4193872-4193891 | None:intergenic | 35.0% | |
| GTCGGAACATACATTACAAA+AGG | + | chr4.4:4195801-4195820 | MS.gene20189:intron | 35.0% | |
| TAAAGACTTTGAGCCATTAG+AGG | + | chr4.4:4193856-4193875 | MS.gene20189:CDS | 35.0% | |
| TATCAAATGACTTCTTGCAG+AGG | - | chr4.4:4196371-4196390 | None:intergenic | 35.0% | |
| TCAAGCTTAGATTCAATGTC+AGG | + | chr4.4:4196532-4196551 | MS.gene20189:intron | 35.0% | |
| TCATACAGTGGCAGTTATAA+GGG | + | chr4.4:4196966-4196985 | MS.gene20189:intron | 35.0% | |
| TCCTGCTTATTGAAATCCAT+GGG | - | chr4.4:4194859-4194878 | None:intergenic | 35.0% | |
| TGAATTTGCCAAAATTGTGC+TGG | + | chr4.4:4193601-4193620 | MS.gene20189:CDS | 35.0% | |
| TTATCTGTGCAAGTACATGT+TGG | - | chr4.4:4195635-4195654 | None:intergenic | 35.0% | |
| TTATCTTCAGCAACTTGAAG+CGG | - | chr4.4:4196164-4196183 | None:intergenic | 35.0% | |
| TTGAGCACGTAAGGAATTAA+CGG | + | chr4.4:4195714-4195733 | MS.gene20189:intron | 35.0% | |
| TTGCTACAGGTAGTTTGAAA+AGG | + | chr4.4:4196822-4196841 | MS.gene20189:intron | 35.0% | |
| TTTCTAACATTCGTGGTCAA+GGG | + | chr4.4:4193918-4193937 | MS.gene20189:CDS | 35.0% | |
| ! | CTATTGTGATGTGATCCTTT+TGG | - | chr4.4:4194657-4194676 | None:intergenic | 35.0% |
| ! | CTTGATGTTTCTAACATTCG+TGG | + | chr4.4:4193911-4193930 | MS.gene20189:CDS | 35.0% |
| ! | TAGTTTAAAACAGGGCATTC+AGG | - | chr4.4:4196631-4196650 | None:intergenic | 35.0% |
| ! | TCATGTAACTTTGCCTTTTG+AGG | + | chr4.4:4196476-4196495 | MS.gene20189:intron | 35.0% |
| ! | TGCTTTTCTATCAATGGCAA+AGG | + | chr4.4:4193559-4193578 | MS.gene20189:CDS | 35.0% |
| ! | TGGGAAGCATAAGAAATAGA+TGG | - | chr4.4:4196288-4196307 | None:intergenic | 35.0% |
| !! | CCATTGATAGAAAAGCATCT+CGG | - | chr4.4:4193556-4193575 | None:intergenic | 35.0% |
| !! | CTTGAAAAACTTGCTGATGA+TGG | + | chr4.4:4194325-4194344 | MS.gene20189:CDS | 35.0% |
| !! | TCTCATCTAGGTATTGATTC+TGG | + | chr4.4:4196198-4196217 | MS.gene20189:intron | 35.0% |
| AAAATGGCCCATATCTTTCC+AGG | + | chr4.4:4193624-4193643 | MS.gene20189:CDS | 40.0% | |
| AAAGCTTTGCAACTATCCTC+AGG | - | chr4.4:4194796-4194815 | None:intergenic | 40.0% | |
| AACTCACCATATGCAACTCT+AGG | - | chr4.4:4193392-4193411 | None:intergenic | 40.0% | |
| AAGCACACCTGGAAAGATAT+GGG | - | chr4.4:4193634-4193653 | None:intergenic | 40.0% | |
| AAGGTTCCTAGAGTTGCATA+TGG | + | chr4.4:4193383-4193402 | MS.gene20189:CDS | 40.0% | |
| AATCAGAGACAGTAACCTGA+TGG | - | chr4.4:4195270-4195289 | None:intergenic | 40.0% | |
| AATCATTCACAGAGCTACAC+AGG | - | chr4.4:4195236-4195255 | None:intergenic | 40.0% | |
| AGTCAAAAGTCATATTCGCG+AGG | + | chr4.4:4193697-4193716 | MS.gene20189:CDS | 40.0% | |
| AGTCATATTCGCGAGGAAAT+TGG | + | chr4.4:4193704-4193723 | MS.gene20189:CDS | 40.0% | |
| AGTTGCTGAAGATAAGGTTG+AGG | + | chr4.4:4196169-4196188 | MS.gene20189:CDS | 40.0% | |
| ATGTTTGGCAGGAACAAGAA+AGG | + | chr4.4:4194975-4194994 | MS.gene20189:intron | 40.0% | |
| CAAGTTTAGTGACCAAGCAA+TGG | + | chr4.4:4194741-4194760 | MS.gene20189:CDS | 40.0% | |
| CAATTCTGCTCACTTGAGAA+AGG | + | chr4.4:4195359-4195378 | MS.gene20189:intron | 40.0% | |
| CGGGAATGTTCAGTGATAAA+CGG | - | chr4.4:4195339-4195358 | None:intergenic | 40.0% | |
| CTAGCGATATGAGAGAACAA+TGG | + | chr4.4:4193951-4193970 | MS.gene20189:CDS | 40.0% | |
| CTCCTGCTTATTGAAATCCA+TGG | - | chr4.4:4194860-4194879 | None:intergenic | 40.0% | |
| CTGTGCAAAGCATGATATTG+AGG | + | chr4.4:4194582-4194601 | MS.gene20189:CDS | 40.0% | |
| GACAAAGGGGCAAATCAAAT+TGG | + | chr4.4:4194211-4194230 | MS.gene20189:CDS | 40.0% | |
| GAGATGGCTTAATCATACAG+TGG | + | chr4.4:4196954-4196973 | MS.gene20189:intron | 40.0% | |
| GAGTTAACAACTCCATTGCT+TGG | - | chr4.4:4194756-4194775 | None:intergenic | 40.0% | |
| GATTGCATCATCAAACCATC+AGG | + | chr4.4:4195252-4195271 | MS.gene20189:intron | 40.0% | |
| GCCAAAATTGTGCTGGAAAA+TGG | + | chr4.4:4193608-4193627 | MS.gene20189:CDS | 40.0% | |
| GGGTCAACTTATTGTCAAAG+TGG | + | chr4.4:4194346-4194365 | MS.gene20189:CDS | 40.0% | |
| GTGCATCATCTCAAACAGAA+TGG | - | chr4.4:4196339-4196358 | None:intergenic | 40.0% | |
| GTTAACTCTATGCTCTGCTT+TGG | + | chr4.4:4194768-4194787 | MS.gene20189:CDS | 40.0% | |
| GTTTCTAACATTCGTGGTCA+AGG | + | chr4.4:4193917-4193936 | MS.gene20189:CDS | 40.0% | |
| TACTCGCTAACAGATATGCT+TGG | + | chr4.4:4196113-4196132 | MS.gene20189:intron | 40.0% | |
| TAGAGTTGCATATGGTGAGT+TGG | + | chr4.4:4193391-4193410 | MS.gene20189:CDS | 40.0% | |
| TCCCATGGATTTCAATAAGC+AGG | + | chr4.4:4194855-4194874 | MS.gene20189:CDS | 40.0% | |
| TGCCATGGTCTTTCTACATA+CGG | - | chr4.4:4194625-4194644 | None:intergenic | 40.0% | |
| TGGACCACAAAAGGAACAAA+TGG | + | chr4.4:4193766-4193785 | MS.gene20189:CDS | 40.0% | |
| TTCTCAAGTGAGCAGAATTG+CGG | - | chr4.4:4195359-4195378 | None:intergenic | 40.0% | |
| TTGAGGATGACATCTCATCT+AGG | + | chr4.4:4196186-4196205 | MS.gene20189:CDS | 40.0% | |
| TTGTTCAAAACCTTGCAGCT+GGG | - | chr4.4:4195661-4195680 | None:intergenic | 40.0% | |
| ! | AAGTACATGTTGGCTATGCA+TGG | - | chr4.4:4195625-4195644 | None:intergenic | 40.0% |
| ! | AGAGCCATTTGTTCCTTTTG+TGG | - | chr4.4:4193773-4193792 | None:intergenic | 40.0% |
| ! | ATATGCAACTCTAGGAACCT+TGG | - | chr4.4:4193384-4193403 | None:intergenic | 40.0% |
| ! | CATGACTCTTCCGGTTTTTA+CGG | + | chr4.4:4195038-4195057 | MS.gene20189:intron | 40.0% |
| ! | CCGAGATGCTTTTCTATCAA+TGG | + | chr4.4:4193553-4193572 | MS.gene20189:CDS | 40.0% |
| ! | CTGATTCAATTTTCCTCCCT+TGG | + | chr4.4:4197102-4197121 | MS.gene20189:intron | 40.0% |
| ! | GCACCCATGTTTTCTCATTT+AGG | + | chr4.4:4195873-4195892 | MS.gene20189:intron | 40.0% |
| ! | GTTGTTGATGGAGTTTGTGA+TGG | + | chr4.4:4193746-4193765 | MS.gene20189:CDS | 40.0% |
| ! | TCTTTTCTTGAGGCTCTTGA+GGG | + | chr4.4:4197145-4197164 | MS.gene20189:CDS | 40.0% |
| ! | TGCTTAAGTCATGTGCTGTT+TGG | - | chr4.4:4196709-4196728 | None:intergenic | 40.0% |
| !! | ACATACGGAGCATTGAATTG+AGG | - | chr4.4:4194610-4194629 | None:intergenic | 40.0% |
| !! | AGTTTGTGATGGACCACAAA+AGG | + | chr4.4:4193757-4193776 | MS.gene20189:CDS | 40.0% |
| !! | GCCATTTTCCAGCACAATTT+TGG | - | chr4.4:4193612-4193631 | None:intergenic | 40.0% |
| !! | GCTTCAAGTTGCTGAAGATA+AGG | + | chr4.4:4196163-4196182 | MS.gene20189:CDS | 40.0% |
| !!! | AATGTTTTGAAGCAGCGCTT+TGG | - | chr4.4:4194518-4194537 | None:intergenic | 40.0% |
| AACGGCTTAACCTAACAGCA+AGG | - | chr4.4:4195321-4195340 | None:intergenic | 45.0% | |
| ACATAAGTTGCTACCTGCCT+TGG | + | chr4.4:4194036-4194055 | MS.gene20189:CDS | 45.0% | |
| CACTACCAGTTGTGTCATCT+TGG | + | chr4.4:4196664-4196683 | MS.gene20189:intron | 45.0% | |
| CCGGAAGAGTCATGATAAGA+CGG | - | chr4.4:4195032-4195051 | None:intergenic | 45.0% | |
| CCGTCTTATCATGACTCTTC+CGG | + | chr4.4:4195029-4195048 | MS.gene20189:intron | 45.0% | |
| CGAACTACGTCCTTGACATA+TGG | - | chr4.4:4194490-4194509 | None:intergenic | 45.0% | |
| CTCCGTATGTAGAAAGACCA+TGG | + | chr4.4:4194620-4194639 | MS.gene20189:CDS | 45.0% | |
| CTTGGCGAAGAAGAATCTGA+TGG | + | chr4.4:4196131-4196150 | MS.gene20189:CDS | 45.0% | |
| GAAGCACACCTGGAAAGATA+TGG | - | chr4.4:4193635-4193654 | None:intergenic | 45.0% | |
| GACATTGTAGTTGCACAGCT+CGG | - | chr4.4:4194468-4194487 | None:intergenic | 45.0% | |
| GCATGGAAAAACTGTTGTGC+TGG | - | chr4.4:4195608-4195627 | None:intergenic | 45.0% | |
| GGAGTCCATACAAGATGAGA+AGG | + | chr4.4:4197186-4197205 | MS.gene20189:CDS | 45.0% | |
| GTTGTTCAAAACCTTGCAGC+TGG | - | chr4.4:4195662-4195681 | None:intergenic | 45.0% | |
| TAGATGTGACGAATGTGACG+AGG | + | chr4.4:4196555-4196574 | MS.gene20189:intron | 45.0% | |
| TCTCAAGTGAGCAGAATTGC+GGG | - | chr4.4:4195358-4195377 | None:intergenic | 45.0% | |
| TTCAGCAACTTGAAGCGGAA+GGG | - | chr4.4:4196159-4196178 | None:intergenic | 45.0% | |
| TTCTGACGATGCACAAACCA+AGG | - | chr4.4:4194056-4194075 | None:intergenic | 45.0% | |
| TTGTATGGACTCCTCAGACT+TGG | - | chr4.4:4197179-4197198 | None:intergenic | 45.0% | |
| ! | CTTTTCTTGAGGCTCTTGAG+GGG | + | chr4.4:4197146-4197165 | MS.gene20189:CDS | 45.0% |
| ! | GATGCACGGGTTTTCCTAAA+TGG | - | chr4.4:4195684-4195703 | None:intergenic | 45.0% |
| ! | GTCTTTTCTTGAGGCTCTTG+AGG | + | chr4.4:4197144-4197163 | MS.gene20189:CDS | 45.0% |
| !! | CGCGGTTTTGTCTTTTCTTG+AGG | + | chr4.4:4197135-4197154 | MS.gene20189:CDS | 45.0% |
| !! | TACTGAGCTTCCTTGCTGTT+AGG | + | chr4.4:4195308-4195327 | MS.gene20189:intron | 45.0% |
| !!! | ACAGTTTTCAGGTTTGGACG+TGG | - | chr4.4:4193321-4193340 | None:intergenic | 45.0% |
| !!! | CTCGAGACAGTTTTCAGGTT+TGG | - | chr4.4:4193327-4193346 | None:intergenic | 45.0% |
| !! | TAAATTACTTTAATTATATT+TGG | + | chr4.4:4196900-4196919 | MS.gene20189:intron | 5.0% |
| ATGGCACTCTCGTCACCAAA+AGG | + | chr4.4:4194639-4194658 | MS.gene20189:CDS | 50.0% | |
| CAGATAAGTACCCAGCTGCA+AGG | + | chr4.4:4195648-4195667 | MS.gene20189:intron | 50.0% | |
| CTTCAGCAACTTGAAGCGGA+AGG | - | chr4.4:4196160-4196179 | None:intergenic | 50.0% | |
| GCAGCTAGTGACTCATCATG+GGG | - | chr4.4:4194148-4194167 | None:intergenic | 50.0% | |
| GCTGACCAAGATGACACAAC+TGG | - | chr4.4:4196672-4196691 | None:intergenic | 50.0% | |
| GGCAGCTAGTGACTCATCAT+GGG | - | chr4.4:4194149-4194168 | None:intergenic | 50.0% | |
| TCGGTTGCAGCCGTAAAAAC+CGG | - | chr4.4:4195051-4195070 | None:intergenic | 50.0% | |
| TGGCAGCTAGTGACTCATCA+TGG | - | chr4.4:4194150-4194169 | None:intergenic | 50.0% | |
| ! | ATGCTCTGCTTTGGTTCCTG+AGG | + | chr4.4:4194777-4194796 | MS.gene20189:CDS | 50.0% |
| ! | ATTCGTGGTCAAGGGTACGA+TGG | + | chr4.4:4193926-4193945 | MS.gene20189:CDS | 50.0% |
| ! | GGGTTCTCGAGACAGTTTTC+AGG | - | chr4.4:4193332-4193351 | None:intergenic | 50.0% |
| !!! | TTTTGGTGACGAGAGTGCCA+TGG | - | chr4.4:4194640-4194659 | None:intergenic | 50.0% |
| AACCGCGAACTTGTCTGCCA+AGG | - | chr4.4:4197122-4197141 | None:intergenic | 55.0% | |
| ACCGCGAACTTGTCTGCCAA+GGG | - | chr4.4:4197121-4197140 | None:intergenic | 55.0% | |
| GACGATGCACAAACCAAGGC+AGG | - | chr4.4:4194052-4194071 | None:intergenic | 55.0% | |
| GGGGTCTGTTTCCAAGTCTG+AGG | + | chr4.4:4197165-4197184 | MS.gene20189:CDS | 55.0% | |
| TCCCTTGGCAGACAAGTTCG+CGG | + | chr4.4:4197117-4197136 | MS.gene20189:intron | 55.0% | |
| GCGAACTTGTCTGCCAAGGG+AGG | - | chr4.4:4197118-4197137 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 4193245 | 4197240 | 4193245 | ID=MS.gene20189 |
| chr4.4 | mRNA | 4193245 | 4197240 | 4193245 | ID=MS.gene20189.t1;Parent=MS.gene20189 |
| chr4.4 | exon | 4193245 | 4194970 | 4193245 | ID=MS.gene20189.t1.exon1;Parent=MS.gene20189.t1 |
| chr4.4 | CDS | 4193245 | 4194970 | 4193245 | ID=cds.MS.gene20189.t1;Parent=MS.gene20189.t1 |
| chr4.4 | exon | 4196126 | 4196207 | 4196126 | ID=MS.gene20189.t1.exon2;Parent=MS.gene20189.t1 |
| chr4.4 | CDS | 4196126 | 4196207 | 4196126 | ID=cds.MS.gene20189.t1;Parent=MS.gene20189.t1 |
| chr4.4 | exon | 4196974 | 4197029 | 4196974 | ID=MS.gene20189.t1.exon3;Parent=MS.gene20189.t1 |
| chr4.4 | CDS | 4196974 | 4197029 | 4196974 | ID=cds.MS.gene20189.t1;Parent=MS.gene20189.t1 |
| chr4.4 | exon | 4197128 | 4197240 | 4197128 | ID=MS.gene20189.t1.exon4;Parent=MS.gene20189.t1 |
| chr4.4 | CDS | 4197128 | 4197240 | 4197128 | ID=cds.MS.gene20189.t1;Parent=MS.gene20189.t1 |
| Gene Sequence |
| Protein sequence |
