Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20249.t1 | XP_003611661.1 | 88.5 | 174 | 17 | 1 | 90 | 263 | 7 | 177 | 3.90E-77 | 298.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20249.t1 | G7K582 | 88.5 | 174 | 17 | 1 | 90 | 263 | 7 | 177 | 2.8e-77 | 298.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene061114 | MS.gene20249 | 0.803515 | 3.36E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20249.t1 | MTR_5g016450 | 88.506 | 174 | 17 | 1 | 90 | 263 | 7 | 177 | 8.70e-108 | 309 |
| MS.gene20249.t1 | MTR_5g016450 | 88.000 | 175 | 17 | 2 | 90 | 263 | 7 | 178 | 6.23e-106 | 305 |
| MS.gene20249.t1 | MTR_5g016450 | 87.578 | 161 | 17 | 1 | 90 | 250 | 7 | 164 | 4.35e-98 | 284 |
| MS.gene20249.t1 | MTR_5g016470 | 92.045 | 88 | 5 | 1 | 1 | 88 | 1 | 86 | 1.06e-49 | 158 |
| MS.gene20249.t1 | MTR_3g462220 | 40.805 | 174 | 86 | 6 | 93 | 262 | 6 | 166 | 1.74e-27 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20249.t1 | AT4G37300 | 50.000 | 180 | 78 | 4 | 89 | 263 | 1 | 173 | 2.77e-48 | 158 |
Find 54 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGCTTCTGTTGGGTTTGA+TGG | 0.233826 | 5.1:+8673782 | None:intergenic |
| TATCAATGAGCCAAAGTTAA+AGG | 0.261217 | 5.1:-8676511 | MS.gene20249:CDS |
| GATAACTACTGTAAGTAAAA+TGG | 0.269136 | 5.1:+8676611 | None:intergenic |
| CCTCTACAATTTACTGTGTT+TGG | 0.291230 | 5.1:+8676567 | None:intergenic |
| ACTTCAGGGCCCAGTGAAAA+AGG | 0.297521 | 5.1:-8676390 | MS.gene20249:CDS |
| TTTAACTTTGGCTCATTGAT+AGG | 0.314531 | 5.1:+8676513 | None:intergenic |
| CATCGAATTGAGCTTTGATT+TGG | 0.326561 | 5.1:+8673823 | None:intergenic |
| CAAGTCCATACTATGACTTC+AGG | 0.348931 | 5.1:-8676405 | MS.gene20249:CDS |
| CGAAACTTTAGCCCTTTGAT+AGG | 0.367063 | 5.1:+8676477 | None:intergenic |
| TCATCAATAACCTTTAACTT+TGG | 0.373825 | 5.1:+8676501 | None:intergenic |
| GTTGGTGAAAACAAATTTAG+AGG | 0.379408 | 5.1:-8673399 | MS.gene20249:CDS |
| CAAAACCCTGAAAACATTGT+TGG | 0.381605 | 5.1:+8676437 | None:intergenic |
| GTTCATCAATGGCCTTTACT+TGG | 0.383900 | 5.1:+8676535 | None:intergenic |
| CTATCAAAGGGCTAAAGTTT+CGG | 0.387494 | 5.1:-8676476 | MS.gene20249:CDS |
| TGTTTCAGGTTCGCTTCTGT+TGG | 0.393664 | 5.1:+8673773 | None:intergenic |
| TGCATCTACTAATCCCTTTG+AGG | 0.398003 | 5.1:+8673656 | None:intergenic |
| TAGGTGCTCTCGCTCCTATT+CGG | 0.403331 | 5.1:+8673140 | None:intergenic |
| GCAACCCTGCCACAAATGAT+TGG | 0.403822 | 5.1:-8673368 | MS.gene20249:CDS |
| TTGGGTTTGATGGGTCGTTT+TGG | 0.407967 | 5.1:+8673792 | None:intergenic |
| TGGGCCCTGAAGTCATAGTA+TGG | 0.423688 | 5.1:+8676400 | None:intergenic |
| AGTGATCTTGATTTGTTCCT+CGG | 0.426245 | 5.1:+8673848 | None:intergenic |
| TTTATAAAAGCAGTTAAAGA+AGG | 0.444966 | 5.1:-8673468 | MS.gene20249:CDS |
| ATGTCTCGTCTAAACCGAAT+AGG | 0.449655 | 5.1:-8673154 | MS.gene20249:CDS |
| GGAACCCAATCATTTGTGGC+AGG | 0.449865 | 5.1:+8673363 | None:intergenic |
| TCGCTTCTGTTGGGTTTGAT+GGG | 0.451444 | 5.1:+8673783 | None:intergenic |
| ATACCAGATGTTCGTGATCA+AGG | 0.459331 | 5.1:+8673337 | None:intergenic |
| CTGTGAAAATAGACAGGAAG+TGG | 0.460529 | 5.1:-8673492 | MS.gene20249:intron |
| CAGACTATACTTTCCTCAAA+GGG | 0.469094 | 5.1:-8673669 | MS.gene20249:CDS |
| CTCATTGATAGGTTCATCAA+TGG | 0.471940 | 5.1:+8676524 | None:intergenic |
| CAACCTTGATCACGAACATC+TGG | 0.474820 | 5.1:-8673340 | MS.gene20249:intron |
| GTTTCAGGTTCGCTTCTGTT+GGG | 0.489259 | 5.1:+8673774 | None:intergenic |
| CAACCCTGCCACAAATGATT+GGG | 0.493231 | 5.1:-8673367 | MS.gene20249:CDS |
| AGATGCACAAGATGAATTTG+TGG | 0.495250 | 5.1:-8673640 | MS.gene20249:CDS |
| CAGATGTTCGTGATCAAGGT+TGG | 0.501326 | 5.1:+8673341 | None:intergenic |
| GTTGGGAACCCAATCATTTG+TGG | 0.503816 | 5.1:+8673359 | None:intergenic |
| TTCATCAATGGCCTTTACTT+GGG | 0.506237 | 5.1:+8676536 | None:intergenic |
| GTTATTGATGAACCTATCAA+AGG | 0.524988 | 5.1:-8676489 | MS.gene20249:CDS |
| AGATGTTCGTGATCAAGGTT+GGG | 0.525029 | 5.1:+8673342 | None:intergenic |
| ATAAAAGCAGTTAAAGAAGG+AGG | 0.527507 | 5.1:-8673465 | MS.gene20249:CDS |
| TCAATGGCCTTTACTTGGGA+GGG | 0.532925 | 5.1:+8676540 | None:intergenic |
| ATCAATGGCCTTTACTTGGG+AGG | 0.538276 | 5.1:+8676539 | None:intergenic |
| AGGCTATCCCTCCCAAGTAA+AGG | 0.542644 | 5.1:-8676547 | MS.gene20249:CDS |
| AAGTCCATACTATGACTTCA+GGG | 0.548542 | 5.1:-8676404 | MS.gene20249:CDS |
| AAAACCTCGTCACTACGACT+TGG | 0.560143 | 5.1:+8673876 | None:intergenic |
| TACAGTAGTTATCATCGTGT+TGG | 0.562681 | 5.1:-8676601 | MS.gene20249:CDS |
| TTATTGATGAACCTATCAAA+GGG | 0.574335 | 5.1:-8676488 | MS.gene20249:CDS |
| TCAGACTATACTTTCCTCAA+AGG | 0.574625 | 5.1:-8673670 | MS.gene20249:CDS |
| GAACCCAATCATTTGTGGCA+GGG | 0.594267 | 5.1:+8673364 | None:intergenic |
| TCATCGTGTTGGCTGTAACA+AGG | 0.601452 | 5.1:-8676590 | MS.gene20249:CDS |
| TCTGCAAGCCATGTTGATGT+TGG | 0.606502 | 5.1:-8673417 | MS.gene20249:CDS |
| CCAAACACAGTAAATTGTAG+AGG | 0.608657 | 5.1:-8676567 | MS.gene20249:CDS |
| TGTGAAAATAGACAGGAAGT+GGG | 0.658962 | 5.1:-8673491 | MS.gene20249:intron |
| AATTGATAAACAACATCACA+CGG | 0.672455 | 5.1:-8673589 | MS.gene20249:intron |
| AAAACCAAGTCGTAGTGACG+AGG | 0.696472 | 5.1:-8673880 | MS.gene20249:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAATAGAATATTTATAAA+TGG | - | chr5.1:8675137-8675156 | MS.gene20249:intron | 10.0% |
| !!! | AATTTTGAAATTTGAAAAAA+TGG | - | chr5.1:8674490-8674509 | MS.gene20249:intron | 10.0% |
| !!! | ATTTTGAAATTTGAAAAAAT+GGG | - | chr5.1:8674491-8674510 | MS.gene20249:intron | 10.0% |
| !!! | TAAATTTTCATCATTTTTTA+TGG | - | chr5.1:8674650-8674669 | MS.gene20249:intron | 10.0% |
| !! | TATATAAAAATTTATGAGCT+TGG | - | chr5.1:8673802-8673821 | MS.gene20249:CDS | 15.0% |
| !!! | AAAATCTTTGTTAACATTTT+TGG | - | chr5.1:8674435-8674454 | MS.gene20249:intron | 15.0% |
| !!! | AAATCTTTGTTAACATTTTT+GGG | - | chr5.1:8674436-8674455 | MS.gene20249:intron | 15.0% |
| !!! | GTAAATTTGTTAGTATTATA+GGG | + | chr5.1:8674722-8674741 | None:intergenic | 15.0% |
| !!! | TATAAATTGATTTGTAATGA+AGG | - | chr5.1:8674943-8674962 | MS.gene20249:intron | 15.0% |
| !!! | TGTAAATTTGTTAGTATTAT+AGG | + | chr5.1:8674723-8674742 | None:intergenic | 15.0% |
| !!! | TTATTTATTTTTAGCAAGTA+TGG | - | chr5.1:8673899-8673918 | MS.gene20249:CDS | 15.0% |
| !!! | TTCACAATTTTGAAATTTTA+GGG | - | chr5.1:8674520-8674539 | MS.gene20249:intron | 15.0% |
| !!! | TTTTGAAATTTGAAAAAATG+GGG | - | chr5.1:8674492-8674511 | MS.gene20249:intron | 15.0% |
| !!! | TTTTTGTGATTATGTTTTTT+TGG | - | chr5.1:8676238-8676257 | MS.gene20249:intron | 15.0% |
| !! | AAAATTCCCTAAATTTAGTT+TGG | - | chr5.1:8674614-8674633 | MS.gene20249:intron | 20.0% |
| !! | AAAATTTCAAAATTGTGAAC+TGG | + | chr5.1:8674519-8674538 | None:intergenic | 20.0% |
| !! | ATTAGTACTAGAATTTATAG+AGG | + | chr5.1:8675775-8675794 | None:intergenic | 20.0% |
| !! | TAAATAGCTCTTCAATATAT+CGG | + | chr5.1:8673505-8673524 | None:intergenic | 20.0% |
| !! | TACTAACATTTACAAACATA+TGG | - | chr5.1:8674744-8674763 | MS.gene20249:intron | 20.0% |
| !! | TAGTTATTGAGTATGAAAAA+AGG | - | chr5.1:8673716-8673735 | MS.gene20249:CDS | 20.0% |
| !! | TATTTGTTTACAAAATTTGC+TGG | - | chr5.1:8674840-8674859 | MS.gene20249:intron | 20.0% |
| !! | TTAGTACTAGAATTTATAGA+GGG | + | chr5.1:8675774-8675793 | None:intergenic | 20.0% |
| !! | TTTATAAAAGCAGTTAAAGA+AGG | - | chr5.1:8676292-8676311 | MS.gene20249:intron | 20.0% |
| !!! | ATTTTGTCCAAACTAAATTT+AGG | + | chr5.1:8674624-8674643 | None:intergenic | 20.0% |
| !!! | GTTCACAATTTTGAAATTTT+AGG | - | chr5.1:8674519-8674538 | MS.gene20249:intron | 20.0% |
| !!! | TGATGAATTGAACTTTTTAT+AGG | + | chr5.1:8675434-8675453 | None:intergenic | 20.0% |
| !!! | TTATGTTCTAATCTTTCTTT+TGG | + | chr5.1:8675122-8675141 | None:intergenic | 20.0% |
| !!! | TTGAAAAAACTGATTTTGTT+CGG | + | chr5.1:8674043-8674062 | None:intergenic | 20.0% |
| !!! | TTTCATCATTTTTTATGGTT+GGG | - | chr5.1:8674655-8674674 | MS.gene20249:intron | 20.0% |
| !!! | TTTTCATCATTTTTTATGGT+TGG | - | chr5.1:8674654-8674673 | MS.gene20249:intron | 20.0% |
| !!! | TTTTGTCCAAACTAAATTTA+GGG | + | chr5.1:8674623-8674642 | None:intergenic | 20.0% |
| ! | AAAATGGGTAGTTTACATAT+GGG | - | chr5.1:8673572-8673591 | MS.gene20249:intron | 25.0% |
| ! | AACTCAAACAAACAAAACTA+TGG | + | chr5.1:8675704-8675723 | None:intergenic | 25.0% |
| ! | AATTGATAAACAACATCACA+CGG | - | chr5.1:8676171-8676190 | MS.gene20249:intron | 25.0% |
| ! | ACTCAAACAAACAAAACTAT+GGG | + | chr5.1:8675703-8675722 | None:intergenic | 25.0% |
| ! | CTGTTGTCTATACAATATTT+AGG | - | chr5.1:8673687-8673706 | MS.gene20249:CDS | 25.0% |
| ! | GATAACTACTGTAAGTAAAA+TGG | + | chr5.1:8673152-8673171 | None:intergenic | 25.0% |
| ! | TAAAAAAGAGAAAACGCTTA+TGG | + | chr5.1:8675629-8675648 | None:intergenic | 25.0% |
| ! | TAAAATGGGTAGTTTACATA+TGG | - | chr5.1:8673571-8673590 | MS.gene20249:intron | 25.0% |
| ! | TTATGATATGTTTGTGTCAT+CGG | - | chr5.1:8673469-8673488 | MS.gene20249:CDS | 25.0% |
| ! | TTATTGATGAACCTATCAAA+GGG | - | chr5.1:8673272-8673291 | MS.gene20249:intron | 25.0% |
| !! | TCATCAATAACCTTTAACTT+TGG | + | chr5.1:8673262-8673281 | None:intergenic | 25.0% |
| !!! | CTAATCTTTCTTTTGGTTAA+TGG | + | chr5.1:8675115-8675134 | None:intergenic | 25.0% |
| !!! | GTTTTAAAGTTGAAGAATAG+TGG | + | chr5.1:8675180-8675199 | None:intergenic | 25.0% |
| !!! | TGAAAAAACTGATTTTGTTC+GGG | + | chr5.1:8674042-8674061 | None:intergenic | 25.0% |
| !!! | TTCATCATTTTTTATGGTTG+GGG | - | chr5.1:8674656-8674675 | MS.gene20249:intron | 25.0% |
| !!! | TTTGATCGACTTTTTTTCAT+CGG | + | chr5.1:8673442-8673461 | None:intergenic | 25.0% |
| AAACTGTGGATTTCGTATAT+TGG | + | chr5.1:8675675-8675694 | None:intergenic | 30.0% | |
| AAGAAGATGAGAAAAAAGAG+AGG | + | chr5.1:8675066-8675085 | None:intergenic | 30.0% | |
| AATGGAACAATTTGTGATGA+GGG | - | chr5.1:8674768-8674787 | MS.gene20249:intron | 30.0% | |
| AGAGCTATTTAGCAAATATG+AGG | - | chr5.1:8673514-8673533 | MS.gene20249:intron | 30.0% | |
| AGCTATTTAGCAAATATGAG+GGG | - | chr5.1:8673516-8673535 | MS.gene20249:intron | 30.0% | |
| ATAAAAGCAGTTAAAGAAGG+AGG | - | chr5.1:8676295-8676314 | MS.gene20249:intron | 30.0% | |
| ATTGAACTGTGAAAATAGAC+AGG | - | chr5.1:8676262-8676281 | MS.gene20249:intron | 30.0% | |
| CATTTACAAACATATGGCAA+TGG | - | chr5.1:8674750-8674769 | MS.gene20249:intron | 30.0% | |
| GAGCTATTTAGCAAATATGA+GGG | - | chr5.1:8673515-8673534 | MS.gene20249:intron | 30.0% | |
| GTTATTGATGAACCTATCAA+AGG | - | chr5.1:8673271-8673290 | MS.gene20249:intron | 30.0% | |
| TAAACAAAGTTCGACATTGA+TGG | - | chr5.1:8675356-8675375 | MS.gene20249:intron | 30.0% | |
| TATATTGGTAAAGGATAACG+TGG | + | chr5.1:8675660-8675679 | None:intergenic | 30.0% | |
| TATCAATGAGCCAAAGTTAA+AGG | - | chr5.1:8673249-8673268 | MS.gene20249:intron | 30.0% | |
| TATGTTGTGTGAAGAAAAAG+TGG | + | chr5.1:8676032-8676051 | None:intergenic | 30.0% | |
| TGGATTTCGTATATTGGTAA+AGG | + | chr5.1:8675669-8675688 | None:intergenic | 30.0% | |
| TTGGGTATAGTATAGTGAAT+GGG | + | chr5.1:8675817-8675836 | None:intergenic | 30.0% | |
| TTTGGGTATAGTATAGTGAA+TGG | + | chr5.1:8675818-8675837 | None:intergenic | 30.0% | |
| ! | ATGTTGTTGTTGTTGTTGTT+TGG | + | chr5.1:8675836-8675855 | None:intergenic | 30.0% |
| ! | GTTGGTGAAAACAAATTTAG+AGG | - | chr5.1:8676361-8676380 | MS.gene20249:intron | 30.0% |
| ! | TATTAGCTGATTAGTTGAGT+AGG | + | chr5.1:8675728-8675747 | None:intergenic | 30.0% |
| ! | TTCTTTTAGTCTCAAGAATC+TGG | + | chr5.1:8674124-8674143 | None:intergenic | 30.0% |
| ! | TTTAACTTTGGCTCATTGAT+AGG | + | chr5.1:8673250-8673269 | None:intergenic | 30.0% |
| !! | AATGTTTTCAGGGTTTTGAT+TGG | - | chr5.1:8673328-8673347 | MS.gene20249:intron | 30.0% |
| !! | ACACTTTGACTTTAAGTTGA+GGG | - | chr5.1:8674908-8674927 | MS.gene20249:intron | 30.0% |
| !! | ATCGATTGTGATTTGTTAAC+AGG | - | chr5.1:8676580-8676599 | MS.gene20249:CDS | 30.0% |
| !! | CTCAGTACTGACTATAAAAT+GGG | - | chr5.1:8673557-8673576 | MS.gene20249:intron | 30.0% |
| !! | TCTCAGTACTGACTATAAAA+TGG | - | chr5.1:8673556-8673575 | MS.gene20249:intron | 30.0% |
| !! | TGTTGTTGTTGTTGTTGTTT+GGG | + | chr5.1:8675835-8675854 | None:intergenic | 30.0% |
| !! | TTTACTGATTTGTGAGAAGA+CGG | + | chr5.1:8673873-8673892 | None:intergenic | 30.0% |
| !! | TTTTTAGCAAGTATGGATCT+GGG | - | chr5.1:8673906-8673925 | MS.gene20249:intron | 30.0% |
| !!! | ATTTTTAGCAAGTATGGATC+TGG | - | chr5.1:8673905-8673924 | MS.gene20249:intron | 30.0% |
| !!! | TTTCATCGGAAGCTATTTTT+CGG | + | chr5.1:8673428-8673447 | None:intergenic | 30.0% |
| AAAAACGTACCAGAAAGCTA+AGG | + | chr5.1:8675012-8675031 | None:intergenic | 35.0% | |
| AAATGGGTATCATCTAAACG+AGG | - | chr5.1:8675154-8675173 | MS.gene20249:intron | 35.0% | |
| AACAACAACAACATCATGGT+AGG | - | chr5.1:8675842-8675861 | MS.gene20249:intron | 35.0% | |
| AAGTCCATACTATGACTTCA+GGG | - | chr5.1:8673356-8673375 | MS.gene20249:CDS | 35.0% | |
| ACTATCATATGCAAGAACCA+AGG | + | chr5.1:8673954-8673973 | None:intergenic | 35.0% | |
| AGATGCACAAGATGAATTTG+TGG | - | chr5.1:8676120-8676139 | MS.gene20249:intron | 35.0% | |
| AGGCTTAGTTTCGAAATTGT+TGG | + | chr5.1:8675414-8675433 | None:intergenic | 35.0% | |
| ATATATGACCTGAAATACGC+AGG | - | chr5.1:8674066-8674085 | MS.gene20249:intron | 35.0% | |
| CAAAACCCTGAAAACATTGT+TGG | + | chr5.1:8673326-8673345 | None:intergenic | 35.0% | |
| CAACAACAACAACAACATCA+TGG | - | chr5.1:8675838-8675857 | MS.gene20249:intron | 35.0% | |
| CAATGGAACAATTTGTGATG+AGG | - | chr5.1:8674767-8674786 | MS.gene20249:intron | 35.0% | |
| CAGACTATACTTTCCTCAAA+GGG | - | chr5.1:8676091-8676110 | MS.gene20249:intron | 35.0% | |
| CATGGAGAAGTAGATAATCT+AGG | - | chr5.1:8675243-8675262 | MS.gene20249:intron | 35.0% | |
| CCAAACACAGTAAATTGTAG+AGG | - | chr5.1:8673193-8673212 | MS.gene20249:intron | 35.0% | |
| CCTCTACAATTTACTGTGTT+TGG | + | chr5.1:8673196-8673215 | None:intergenic | 35.0% | |
| CTATCAAAGGGCTAAAGTTT+CGG | - | chr5.1:8673284-8673303 | MS.gene20249:intron | 35.0% | |
| CTCAACTTAAAGTCAAAGTG+TGG | + | chr5.1:8674909-8674928 | None:intergenic | 35.0% | |
| CTCATTGATAGGTTCATCAA+TGG | + | chr5.1:8673239-8673258 | None:intergenic | 35.0% | |
| GACTAGACACATCTTAAACA+TGG | - | chr5.1:8675225-8675244 | MS.gene20249:intron | 35.0% | |
| TACAGTAGTTATCATCGTGT+TGG | - | chr5.1:8673159-8673178 | MS.gene20249:CDS | 35.0% | |
| TAGATGCTTCCTTGAAGATT+TGG | - | chr5.1:8674974-8674993 | MS.gene20249:intron | 35.0% | |
| TATCACTGTATCAATGACCT+GGG | + | chr5.1:8673396-8673415 | None:intergenic | 35.0% | |
| TCAGACTATACTTTCCTCAA+AGG | - | chr5.1:8676090-8676109 | MS.gene20249:intron | 35.0% | |
| TGAAGAAAAAGTGGAGTCAA+CGG | + | chr5.1:8676023-8676042 | None:intergenic | 35.0% | |
| TGAGAGTTAAGAAGCAGAAT+GGG | - | chr5.1:8674679-8674698 | MS.gene20249:intron | 35.0% | |
| TGGGTATAGTATAGTGAATG+GGG | + | chr5.1:8675816-8675835 | None:intergenic | 35.0% | |
| TGTGAAAATAGACAGGAAGT+GGG | - | chr5.1:8676269-8676288 | MS.gene20249:intron | 35.0% | |
| TTAACACTTCCAAGATTCCT+TGG | - | chr5.1:8673934-8673953 | MS.gene20249:intron | 35.0% | |
| TTATCACTGTATCAATGACC+TGG | + | chr5.1:8673397-8673416 | None:intergenic | 35.0% | |
| TTCATCAATGGCCTTTACTT+GGG | + | chr5.1:8673227-8673246 | None:intergenic | 35.0% | |
| TTTCGAAATTGTTGGTCGTT+TGG | + | chr5.1:8675406-8675425 | None:intergenic | 35.0% | |
| TTTGATTACCTGCGTATTTC+AGG | + | chr5.1:8674077-8674096 | None:intergenic | 35.0% | |
| ! | AGAAAGCCAACAATGTTTTC+AGG | - | chr5.1:8673317-8673336 | MS.gene20249:intron | 35.0% |
| ! | CATCGAATTGAGCTTTGATT+TGG | + | chr5.1:8675940-8675959 | None:intergenic | 35.0% |
| ! | GAAAGCCAACAATGTTTTCA+GGG | - | chr5.1:8673318-8673337 | MS.gene20249:intron | 35.0% |
| ! | TGTTTTCACCAACATCAACA+TGG | + | chr5.1:8676354-8676373 | None:intergenic | 35.0% |
| !! | AGTGATCTTGATTTGTTCCT+CGG | + | chr5.1:8675915-8675934 | None:intergenic | 35.0% |
| !! | ATCTTCAAGGAAGCATCTAA+AGG | + | chr5.1:8674973-8674992 | None:intergenic | 35.0% |
| !! | CACACTTTGACTTTAAGTTG+AGG | - | chr5.1:8674907-8674926 | MS.gene20249:intron | 35.0% |
| !! | TTTGACTTTAAGTTGAGGGA+GGG | - | chr5.1:8674912-8674931 | MS.gene20249:intron | 35.0% |
| !!! | GATTGAAGTTTTTCAAGCTC+TGG | + | chr5.1:8676055-8676074 | None:intergenic | 35.0% |
| AACCGTCGAAATGTAAGTTG+GGG | + | chr5.1:8675523-8675542 | None:intergenic | 40.0% | |
| AAGAAAAAGTGGAGTCAACG+GGG | + | chr5.1:8676021-8676040 | None:intergenic | 40.0% | |
| AGATGTTCGTGATCAAGGTT+GGG | + | chr5.1:8676421-8676440 | None:intergenic | 40.0% | |
| ATACCAGATGTTCGTGATCA+AGG | + | chr5.1:8676426-8676445 | None:intergenic | 40.0% | |
| ATGCAAGAACCAAGGAATCT+TGG | + | chr5.1:8673946-8673965 | None:intergenic | 40.0% | |
| ATGTCTCGTCTAAACCGAAT+AGG | - | chr5.1:8676606-8676625 | MS.gene20249:CDS | 40.0% | |
| ATTGGTAAAGGATAACGTGG+TGG | + | chr5.1:8675657-8675676 | None:intergenic | 40.0% | |
| CAACCGTCGAAATGTAAGTT+GGG | + | chr5.1:8675524-8675543 | None:intergenic | 40.0% | |
| CAAGTCCATACTATGACTTC+AGG | - | chr5.1:8673355-8673374 | MS.gene20249:CDS | 40.0% | |
| CGAAACTTTAGCCCTTTGAT+AGG | + | chr5.1:8673286-8673305 | None:intergenic | 40.0% | |
| CTGTGAAAATAGACAGGAAG+TGG | - | chr5.1:8676268-8676287 | MS.gene20249:intron | 40.0% | |
| GAAATTGTTGGTCGTTTGGT+GGG | + | chr5.1:8675402-8675421 | None:intergenic | 40.0% | |
| GAAGAAAAAGTGGAGTCAAC+GGG | + | chr5.1:8676022-8676041 | None:intergenic | 40.0% | |
| GTGAGAGTTAAGAAGCAGAA+TGG | - | chr5.1:8674678-8674697 | MS.gene20249:intron | 40.0% | |
| GTTCATCAATGGCCTTTACT+TGG | + | chr5.1:8673228-8673247 | None:intergenic | 40.0% | |
| TACAACACAACATCCATGCT+AGG | - | chr5.1:8673837-8673856 | MS.gene20249:CDS | 40.0% | |
| TACCCCAACTTACATTTCGA+CGG | - | chr5.1:8675518-8675537 | MS.gene20249:intron | 40.0% | |
| TGCATCTACTAATCCCTTTG+AGG | + | chr5.1:8676107-8676126 | None:intergenic | 40.0% | |
| TGTCTTTAGTTAGTCGCTGA+AGG | + | chr5.1:8675299-8675318 | None:intergenic | 40.0% | |
| ! | AAATTGTTGGTCGTTTGGTG+GGG | + | chr5.1:8675401-8675420 | None:intergenic | 40.0% |
| ! | TGTGAGAAGACGGTTTGTTT+AGG | + | chr5.1:8673863-8673882 | None:intergenic | 40.0% |
| !! | CAAGATGGAGAGGTATTGAA+AGG | + | chr5.1:8675464-8675483 | None:intergenic | 40.0% |
| !! | CTTTGACTTTAAGTTGAGGG+AGG | - | chr5.1:8674911-8674930 | MS.gene20249:intron | 40.0% |
| !! | TCCTTGAAGATTTGGTGTCA+CGG | - | chr5.1:8674982-8675001 | MS.gene20249:intron | 40.0% |
| !!! | ATCGGAAGCTATTTTTCGGT+CGG | + | chr5.1:8673424-8673443 | None:intergenic | 40.0% |
| !!! | GTTTTCAGGGTTTTGATTGG+TGG | - | chr5.1:8673331-8673350 | MS.gene20249:intron | 40.0% |
| AAAACCAAGTCGTAGTGACG+AGG | - | chr5.1:8675880-8675899 | MS.gene20249:intron | 45.0% | |
| AAAACCTCGTCACTACGACT+TGG | + | chr5.1:8675887-8675906 | None:intergenic | 45.0% | |
| AAACAACATCACACGGTTCG+TGG | - | chr5.1:8676178-8676197 | MS.gene20249:intron | 45.0% | |
| AAGCAGAATGGGCATGTCAA+TGG | - | chr5.1:8674690-8674709 | MS.gene20249:intron | 45.0% | |
| ACCGTGACACCAAATCTTCA+AGG | + | chr5.1:8674986-8675005 | None:intergenic | 45.0% | |
| ACGTCAGTAAGAGAGCAAGA+TGG | + | chr5.1:8675479-8675498 | None:intergenic | 45.0% | |
| AGTAAGAGAGCAAGATGGAG+AGG | + | chr5.1:8675474-8675493 | None:intergenic | 45.0% | |
| AGTACGAATCCGATGCTCAA+AGG | + | chr5.1:8673993-8674012 | None:intergenic | 45.0% | |
| ATCAATGGCCTTTACTTGGG+AGG | + | chr5.1:8673224-8673243 | None:intergenic | 45.0% | |
| ATCTTGCTCTCTTACTGACG+TGG | - | chr5.1:8675478-8675497 | MS.gene20249:intron | 45.0% | |
| CAACCCTGCCACAAATGATT+GGG | - | chr5.1:8676393-8676412 | MS.gene20249:CDS | 45.0% | |
| CAACCTTGATCACGAACATC+TGG | - | chr5.1:8676420-8676439 | MS.gene20249:CDS | 45.0% | |
| CAGATGTTCGTGATCAAGGT+TGG | + | chr5.1:8676422-8676441 | None:intergenic | 45.0% | |
| CGAAATTGTTGGTCGTTTGG+TGG | + | chr5.1:8675403-8675422 | None:intergenic | 45.0% | |
| CTAATCCTCCAACACCACTT+TGG | - | chr5.1:8675790-8675809 | MS.gene20249:intron | 45.0% | |
| GAACCCAATCATTTGTGGCA+GGG | + | chr5.1:8676399-8676418 | None:intergenic | 45.0% | |
| GCAACCGTCGAAATGTAAGT+TGG | + | chr5.1:8675525-8675544 | None:intergenic | 45.0% | |
| GTACGAATCCGATGCTCAAA+GGG | + | chr5.1:8673992-8674011 | None:intergenic | 45.0% | |
| GTTGGGAACCCAATCATTTG+TGG | + | chr5.1:8676404-8676423 | None:intergenic | 45.0% | |
| TATAGTGAATGGGGCCAAAG+TGG | + | chr5.1:8675807-8675826 | None:intergenic | 45.0% | |
| TCAATGGCCTTTACTTGGGA+GGG | + | chr5.1:8673223-8673242 | None:intergenic | 45.0% | |
| TCGCTTCTGTTGGGTTTGAT+GGG | + | chr5.1:8675980-8675999 | None:intergenic | 45.0% | |
| TCTGCAAGCCATGTTGATGT+TGG | - | chr5.1:8676343-8676362 | MS.gene20249:intron | 45.0% | |
| TTACTGCTCCCTTTGAGCAT+CGG | - | chr5.1:8673981-8674000 | MS.gene20249:intron | 45.0% | |
| TTCGCTTCTGTTGGGTTTGA+TGG | + | chr5.1:8675981-8676000 | None:intergenic | 45.0% | |
| TTGTGATGAGGGTGATTGCA+AGG | - | chr5.1:8674779-8674798 | MS.gene20249:intron | 45.0% | |
| ! | AATTGTTGGTCGTTTGGTGG+GGG | + | chr5.1:8675400-8675419 | None:intergenic | 45.0% |
| !! | AACTATGGGCGTTGAAACTG+TGG | + | chr5.1:8675689-8675708 | None:intergenic | 45.0% |
| !! | GTTTCAGGTTCGCTTCTGTT+GGG | + | chr5.1:8675989-8676008 | None:intergenic | 45.0% |
| !! | TCATCGTGTTGGCTGTAACA+AGG | - | chr5.1:8673170-8673189 | MS.gene20249:intron | 45.0% |
| !! | TGAAGATTTGGTGTCACGGT+TGG | - | chr5.1:8674986-8675005 | MS.gene20249:intron | 45.0% |
| !! | TGTTTCAGGTTCGCTTCTGT+TGG | + | chr5.1:8675990-8676009 | None:intergenic | 45.0% |
| !! | TTGGGTTTGATGGGTCGTTT+TGG | + | chr5.1:8675971-8675990 | None:intergenic | 45.0% |
| !!! | ACGGGGTTTTGTTGTGTTTC+AGG | + | chr5.1:8676004-8676023 | None:intergenic | 45.0% |
| !! | ATAATAGAATATTTATAAAT+GGG | - | chr5.1:8675138-8675157 | MS.gene20249:intron | 5.0% |
| !! | TACAAAATAAAATAAAAATT+TGG | - | chr5.1:8673750-8673769 | MS.gene20249:CDS | 5.0% |
| ACTTCAGGGCCCAGTGAAAA+AGG | - | chr5.1:8673370-8673389 | MS.gene20249:CDS | 50.0% | |
| AGGCTATCCCTCCCAAGTAA+AGG | - | chr5.1:8673213-8673232 | MS.gene20249:intron | 50.0% | |
| GCAACCCTGCCACAAATGAT+TGG | - | chr5.1:8676392-8676411 | MS.gene20249:CDS | 50.0% | |
| GGAACCCAATCATTTGTGGC+AGG | + | chr5.1:8676400-8676419 | None:intergenic | 50.0% | |
| TAGGTGCTCTCGCTCCTATT+CGG | + | chr5.1:8676623-8676642 | None:intergenic | 50.0% | |
| TGGGCCCTGAAGTCATAGTA+TGG | + | chr5.1:8673363-8673382 | None:intergenic | 50.0% | |
| ! | CGGTTTGTTTAGGCCTAGCA+TGG | + | chr5.1:8673853-8673872 | None:intergenic | 50.0% |
| !! | ATGACCTGGGCCTTTTTCAC+TGG | + | chr5.1:8673383-8673402 | None:intergenic | 50.0% |
| !! | TGACCTGGGCCTTTTTCACT+GGG | + | chr5.1:8673382-8673401 | None:intergenic | 50.0% |
| !!! | TGACGAGGTTTTGAACACCG+AGG | - | chr5.1:8675895-8675914 | MS.gene20249:intron | 50.0% |
| GAATGGGGCCAAAGTGGTGT+TGG | + | chr5.1:8675801-8675820 | None:intergenic | 55.0% | |
| TGGTGGGGGCTGTTAAAGAG+CGG | + | chr5.1:8675386-8675405 | None:intergenic | 55.0% | |
| !! | CACGGTTGGCCTTAGCTTTC+TGG | - | chr5.1:8675000-8675019 | MS.gene20249:intron | 55.0% |
| ! | TGGGGCCAAAGTGGTGTTGG+AGG | + | chr5.1:8675798-8675817 | None:intergenic | 60.0% |
| GGGCCCAGTGAAAAAGGCCC+AGG | - | chr5.1:8673376-8673395 | MS.gene20249:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 8673139 | 8676643 | 8673139 | ID=MS.gene20249 |
| chr5.1 | mRNA | 8673139 | 8676643 | 8673139 | ID=MS.gene20249.t1;Parent=MS.gene20249 |
| chr5.1 | exon | 8676385 | 8676643 | 8676385 | ID=MS.gene20249.t1.exon1;Parent=MS.gene20249.t1 |
| chr5.1 | CDS | 8676385 | 8676643 | 8676385 | ID=cds.MS.gene20249.t1;Parent=MS.gene20249.t1 |
| chr5.1 | exon | 8673590 | 8673918 | 8673590 | ID=MS.gene20249.t1.exon2;Parent=MS.gene20249.t1 |
| chr5.1 | CDS | 8673590 | 8673918 | 8673590 | ID=cds.MS.gene20249.t1;Parent=MS.gene20249.t1 |
| chr5.1 | exon | 8673341 | 8673502 | 8673341 | ID=MS.gene20249.t1.exon3;Parent=MS.gene20249.t1 |
| chr5.1 | CDS | 8673341 | 8673502 | 8673341 | ID=cds.MS.gene20249.t1;Parent=MS.gene20249.t1 |
| chr5.1 | exon | 8673139 | 8673180 | 8673139 | ID=MS.gene20249.t1.exon4;Parent=MS.gene20249.t1 |
| chr5.1 | CDS | 8673139 | 8673180 | 8673139 | ID=cds.MS.gene20249.t1;Parent=MS.gene20249.t1 |
| Gene Sequence |
| Protein sequence |
