Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20270.t1 | XP_003611628.1 | 98 | 293 | 6 | 0 | 1 | 293 | 1 | 293 | 1.30E-164 | 589 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20270.t1 | Q8VZJ7 | 64.2 | 279 | 99 | 1 | 11 | 289 | 7 | 284 | 1.3e-101 | 370.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20270.t1 | G7K3W6 | 98.0 | 293 | 6 | 0 | 1 | 293 | 1 | 293 | 9.0e-165 | 589.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene20270 | MS.gene56734 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20270.t1 | MTR_5g016090 | 97.952 | 293 | 6 | 0 | 1 | 293 | 1 | 293 | 0.0 | 598 |
| MS.gene20270.t1 | MTR_4g095370 | 72.297 | 296 | 80 | 2 | 1 | 294 | 1 | 296 | 1.08e-159 | 446 |
| MS.gene20270.t1 | MTR_5g016090 | 97.647 | 170 | 4 | 0 | 1 | 170 | 1 | 170 | 3.48e-119 | 342 |
| MS.gene20270.t1 | MTR_4g095370 | 68.599 | 207 | 63 | 2 | 1 | 205 | 1 | 207 | 2.26e-99 | 290 |
| MS.gene20270.t1 | MTR_4g095370 | 68.447 | 206 | 63 | 2 | 1 | 204 | 1 | 206 | 7.97e-99 | 289 |
| MS.gene20270.t1 | MTR_5g022960 | 46.154 | 208 | 105 | 4 | 84 | 287 | 79 | 283 | 7.76e-57 | 185 |
| MS.gene20270.t1 | MTR_8g074810 | 44.498 | 209 | 107 | 5 | 84 | 287 | 68 | 272 | 4.63e-56 | 182 |
| MS.gene20270.t1 | MTR_8g074890 | 43.269 | 208 | 111 | 4 | 84 | 287 | 67 | 271 | 2.46e-54 | 178 |
| MS.gene20270.t1 | MTR_8g074880 | 43.128 | 211 | 105 | 5 | 84 | 286 | 116 | 319 | 4.86e-53 | 176 |
| MS.gene20270.t1 | MTR_3g114670 | 36.170 | 282 | 152 | 7 | 13 | 286 | 12 | 273 | 9.53e-52 | 171 |
| MS.gene20270.t1 | MTR_8g074830 | 42.308 | 208 | 113 | 4 | 84 | 287 | 71 | 275 | 2.52e-51 | 170 |
| MS.gene20270.t1 | MTR_6g009440 | 42.439 | 205 | 110 | 5 | 86 | 286 | 54 | 254 | 9.57e-49 | 164 |
| MS.gene20270.t1 | MTR_2g020800 | 41.778 | 225 | 118 | 6 | 69 | 286 | 28 | 246 | 9.67e-49 | 164 |
| MS.gene20270.t1 | MTR_2g020800 | 42.291 | 227 | 116 | 7 | 69 | 286 | 28 | 248 | 5.69e-48 | 162 |
| MS.gene20270.t1 | MTR_1g116810 | 41.627 | 209 | 117 | 4 | 84 | 291 | 76 | 280 | 2.46e-47 | 160 |
| MS.gene20270.t1 | MTR_4g118560 | 40.359 | 223 | 118 | 6 | 73 | 286 | 27 | 243 | 1.53e-46 | 158 |
| MS.gene20270.t1 | MTR_8g074870 | 41.981 | 212 | 94 | 6 | 84 | 287 | 29 | 219 | 4.49e-46 | 155 |
| MS.gene20270.t1 | MTR_3g114610 | 41.827 | 208 | 107 | 7 | 84 | 286 | 97 | 295 | 5.40e-44 | 152 |
| MS.gene20270.t1 | MTR_3g114590 | 41.148 | 209 | 106 | 5 | 84 | 286 | 65 | 262 | 1.50e-43 | 157 |
| MS.gene20270.t1 | MTR_3g114590 | 36.486 | 222 | 114 | 10 | 68 | 286 | 262 | 459 | 1.67e-29 | 117 |
| MS.gene20270.t1 | MTR_5g022960 | 39.062 | 128 | 75 | 2 | 84 | 211 | 79 | 203 | 2.89e-23 | 95.1 |
| MS.gene20270.t1 | MTR_6g053720 | 24.046 | 262 | 166 | 7 | 27 | 284 | 4 | 236 | 3.27e-18 | 83.2 |
| MS.gene20270.t1 | MTR_3g051200 | 37.692 | 130 | 69 | 5 | 98 | 223 | 25 | 146 | 4.23e-18 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20270.t1 | AT4G33910 | 64.158 | 279 | 99 | 1 | 11 | 289 | 7 | 284 | 3.31e-132 | 377 |
| MS.gene20270.t1 | AT2G23096 | 54.839 | 279 | 115 | 4 | 13 | 291 | 6 | 273 | 8.59e-109 | 317 |
| MS.gene20270.t1 | AT1G20270 | 37.676 | 284 | 153 | 9 | 10 | 286 | 14 | 280 | 1.58e-56 | 184 |
| MS.gene20270.t1 | AT5G66060 | 42.308 | 208 | 113 | 4 | 84 | 287 | 79 | 283 | 1.43e-52 | 174 |
| MS.gene20270.t1 | AT3G28490 | 44.175 | 206 | 106 | 4 | 86 | 286 | 35 | 236 | 1.60e-52 | 174 |
| MS.gene20270.t1 | AT3G28480 | 42.439 | 205 | 110 | 4 | 86 | 286 | 59 | 259 | 3.32e-50 | 168 |
| MS.gene20270.t1 | AT4G35810 | 40.385 | 208 | 115 | 5 | 83 | 285 | 80 | 283 | 6.11e-49 | 164 |
| MS.gene20270.t1 | AT4G35810 | 40.385 | 208 | 115 | 5 | 83 | 285 | 80 | 283 | 6.11e-49 | 164 |
| MS.gene20270.t1 | AT2G17720 | 41.346 | 208 | 111 | 5 | 84 | 285 | 81 | 283 | 1.26e-48 | 164 |
| MS.gene20270.t1 | AT5G18900 | 41.667 | 216 | 117 | 5 | 77 | 286 | 31 | 243 | 2.70e-46 | 158 |
| MS.gene20270.t1 | AT2G43080 | 38.028 | 213 | 127 | 3 | 78 | 289 | 72 | 280 | 8.88e-46 | 156 |
| MS.gene20270.t1 | AT3G06300 | 40.865 | 208 | 112 | 5 | 86 | 286 | 41 | 244 | 2.31e-45 | 155 |
| MS.gene20270.t1 | AT3G28480 | 39.713 | 209 | 118 | 4 | 86 | 286 | 59 | 267 | 2.59e-42 | 148 |
| MS.gene20270.t1 | AT4G35820 | 36.041 | 197 | 95 | 6 | 83 | 270 | 88 | 262 | 1.06e-33 | 124 |
| MS.gene20270.t1 | AT5G66060 | 40.000 | 145 | 82 | 3 | 84 | 228 | 79 | 218 | 9.61e-28 | 108 |
| MS.gene20270.t1 | AT1G20270 | 31.034 | 203 | 126 | 5 | 9 | 211 | 13 | 201 | 8.95e-25 | 99.0 |
| MS.gene20270.t1 | AT1G20270 | 31.034 | 203 | 126 | 5 | 9 | 211 | 13 | 201 | 8.95e-25 | 99.0 |
| MS.gene20270.t1 | AT4G25600 | 28.704 | 216 | 123 | 5 | 74 | 286 | 50 | 237 | 3.44e-18 | 83.2 |
| MS.gene20270.t1 | AT4G25600 | 28.141 | 199 | 112 | 5 | 91 | 286 | 6 | 176 | 1.88e-14 | 71.6 |
| MS.gene20270.t1 | AT4G25600 | 28.358 | 201 | 109 | 6 | 91 | 286 | 15 | 185 | 2.15e-14 | 71.6 |
| MS.gene20270.t1 | AT4G25600 | 28.141 | 199 | 112 | 5 | 91 | 286 | 3 | 173 | 2.19e-14 | 71.2 |
Find 71 sgRNAs with CRISPR-Local
Find 328 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTACTTCGATTCCATTTC+AGG | 0.136860 | 5.1:-8395728 | MS.gene20270:intron |
| TGTTCTGCACTTGCAAAATT+AGG | 0.198134 | 5.1:+8394945 | None:intergenic |
| AACATGGTCTCCCCACCTTC+TGG | 0.302297 | 5.1:+8391596 | None:intergenic |
| GCATTCAATCCCGCGGAATA+TGG | 0.304254 | 5.1:-8393208 | MS.gene20270:CDS |
| GGGAGCTGCCCCGTTATTAA+AGG | 0.306596 | 5.1:-8390378 | MS.gene20270:CDS |
| TTCTTTCTCGCTGGTTTCTT+CGG | 0.322163 | 5.1:-8395994 | MS.gene20270:CDS |
| CACTTCTCCCCTTTAATAAC+GGG | 0.340000 | 5.1:+8390369 | None:intergenic |
| ATATAACATCCTCCGCTATA+AGG | 0.351944 | 5.1:-8393260 | MS.gene20270:CDS |
| TTACCCTTTGGCTCTCTTGT+GGG | 0.364054 | 5.1:+8393185 | None:intergenic |
| AAGAATTCACAAACCTGAAA+TGG | 0.366184 | 5.1:+8395715 | None:intergenic |
| CTTCGTTCTCAAGCTCCAAT+TGG | 0.383586 | 5.1:+8396056 | None:intergenic |
| ACCGGGTCAATTGTACCATT+AGG | 0.395671 | 5.1:+8391371 | None:intergenic |
| CCGGGTCAATTGTACCATTA+GGG | 0.398163 | 5.1:+8391372 | None:intergenic |
| TCGCGTAACATCAATCTTGA+TGG | 0.411469 | 5.1:+8394882 | None:intergenic |
| CAGTTTCTTCCATTACTCTC+AGG | 0.413346 | 5.1:-8395968 | MS.gene20270:intron |
| TGCATCTTCTTCTTTCTCGC+TGG | 0.415401 | 5.1:-8396003 | MS.gene20270:CDS |
| CGAAAACGGTTAAAGCCAAT+TGG | 0.420066 | 5.1:-8396071 | MS.gene20270:CDS |
| GAAAGAAGAAGATGCATAAG+AGG | 0.422059 | 5.1:+8396010 | None:intergenic |
| CCACTTCTCCCCTTTAATAA+CGG | 0.432353 | 5.1:+8390368 | None:intergenic |
| GTTACCTCTCCATGAGTCTT+GGG | 0.445486 | 5.1:+8394062 | None:intergenic |
| GGAGCTGCCCCGTTATTAAA+GGG | 0.447230 | 5.1:-8390377 | MS.gene20270:CDS |
| CTTACCCTTTGGCTCTCTTG+TGG | 0.448126 | 5.1:+8393184 | None:intergenic |
| GGGTTGCTACAAAGTGGATA+AGG | 0.448780 | 5.1:-8390347 | MS.gene20270:CDS |
| CAGCGCTTCTGAGGACAAAA+CGG | 0.463571 | 5.1:-8394132 | MS.gene20270:CDS |
| TGTTACCTCTCCATGAGTCT+TGG | 0.484955 | 5.1:+8394061 | None:intergenic |
| GGTTGCTACAAAGTGGATAA+GGG | 0.497654 | 5.1:-8390346 | MS.gene20270:CDS |
| AATCCAAATGAAAGCGAAAA+CGG | 0.504969 | 5.1:-8396085 | None:intergenic |
| TCTTGTGGGCCATATTCCGC+GGG | 0.507942 | 5.1:+8393199 | None:intergenic |
| GAGCACCGTTTGTTGCATGC+TGG | 0.515078 | 5.1:-8395769 | MS.gene20270:CDS |
| AGCGCTTCTGAGGACAAAAC+GGG | 0.516147 | 5.1:-8394131 | MS.gene20270:CDS |
| TTGTTGCATGCTGGAGAGTC+CGG | 0.518286 | 5.1:-8395760 | MS.gene20270:CDS |
| TAACAGATGTTCCAGAAGGT+GGG | 0.520217 | 5.1:-8391607 | MS.gene20270:CDS |
| TGGCGTGAGAGTGAGATTGC+TGG | 0.520269 | 5.1:-8395815 | MS.gene20270:CDS |
| AACATCCTCCGCTATAAGGT+TGG | 0.521133 | 5.1:-8393256 | MS.gene20270:CDS |
| CCCTAATGGTACAATTGACC+CGG | 0.524529 | 5.1:-8391372 | MS.gene20270:intron |
| CCGTTATTAAAGGGGAGAAG+TGG | 0.527804 | 5.1:-8390368 | MS.gene20270:CDS |
| TAATAACGGGGCAGCTCCCA+TGG | 0.528613 | 5.1:+8390382 | None:intergenic |
| TTAACAGATGTTCCAGAAGG+TGG | 0.530944 | 5.1:-8391608 | MS.gene20270:CDS |
| AGAAACAGAGGAAGGTACAA+AGG | 0.544545 | 5.1:-8394856 | MS.gene20270:CDS |
| ACTCTCCAGCATGCAACAAA+CGG | 0.553944 | 5.1:+8395764 | None:intergenic |
| AACAGATGTTCCAGAAGGTG+GGG | 0.556390 | 5.1:-8391606 | MS.gene20270:CDS |
| CGAAGTAATGAAATTATCAC+CGG | 0.556524 | 5.1:+8395741 | None:intergenic |
| CTCTTGTGGGCCATATTCCG+CGG | 0.560435 | 5.1:+8393198 | None:intergenic |
| CGTTATTAAAGGGGAGAAGT+GGG | 0.569773 | 5.1:-8390367 | MS.gene20270:CDS |
| CTTTGGCAGACATCACTCCA+TGG | 0.570191 | 5.1:-8390399 | MS.gene20270:intron |
| ATGTGATAGCATAATTGAGA+TGG | 0.580962 | 5.1:-8394922 | MS.gene20270:CDS |
| ATCAAGCCTCAGAAGGGAGA+CGG | 0.584518 | 5.1:-8391416 | MS.gene20270:CDS |
| ATGGCCCACAAGAGAGCCAA+AGG | 0.587118 | 5.1:-8393189 | MS.gene20270:CDS |
| TGTGTAGAATGGGTCGAACA+TGG | 0.592846 | 5.1:-8391477 | MS.gene20270:intron |
| GAAACAGAGGAAGGTACAAA+GGG | 0.602245 | 5.1:-8394855 | MS.gene20270:CDS |
| AGAAGTCCGTCTCCCTTCTG+AGG | 0.603684 | 5.1:+8391410 | None:intergenic |
| TTAGGAAAGTATAAAGCGCG+TGG | 0.604523 | 5.1:+8394963 | None:intergenic |
| TTTGGCAGACATCACTCCAT+GGG | 0.605744 | 5.1:-8390398 | MS.gene20270:intron |
| AGAAGTGGGTTGCTACAAAG+TGG | 0.608156 | 5.1:-8390353 | MS.gene20270:CDS |
| TATGTTTATCAGCGCTTCTG+AGG | 0.608404 | 5.1:-8394141 | MS.gene20270:CDS |
| TTTGTCCAACCTTATAGCGG+AGG | 0.613087 | 5.1:+8393251 | None:intergenic |
| ATCAAGATTGATGTTACGCG+AGG | 0.628769 | 5.1:-8394880 | MS.gene20270:CDS |
| TATTTAACAGATGTTCCAGA+AGG | 0.629276 | 5.1:-8391611 | MS.gene20270:CDS |
| AAAATCGGTGAAGGATGAGA+CGG | 0.638103 | 5.1:-8395791 | MS.gene20270:CDS |
| TGGCCCACAAGAGAGCCAAA+GGG | 0.641180 | 5.1:-8393188 | MS.gene20270:intron |
| CGCGAGGGAGAAACAGAGGA+AGG | 0.642901 | 5.1:-8394864 | MS.gene20270:CDS |
| TAGCATAATTGAGATGGCAA+AGG | 0.646432 | 5.1:-8394916 | MS.gene20270:CDS |
| TAGGAAAGTATAAAGCGCGT+GGG | 0.646893 | 5.1:+8394964 | None:intergenic |
| ATGCATAAGAGGAAAACAGA+AGG | 0.650557 | 5.1:+8396021 | None:intergenic |
| CTATGATGCATTCAATCCCG+CGG | 0.659764 | 5.1:-8393215 | MS.gene20270:CDS |
| GAGCTGCCCCGTTATTAAAG+GGG | 0.661369 | 5.1:-8390376 | MS.gene20270:CDS |
| GTACAAAGGGAATCAGAACA+AGG | 0.662305 | 5.1:-8394842 | MS.gene20270:intron |
| TCAAGATTGATGTTACGCGA+GGG | 0.665505 | 5.1:-8394879 | MS.gene20270:CDS |
| AATTCCCAAGACTCATGGAG+AGG | 0.667424 | 5.1:-8394066 | MS.gene20270:intron |
| GTTACGCGAGGGAGAAACAG+AGG | 0.681875 | 5.1:-8394868 | MS.gene20270:CDS |
| ACTTCTCCCCTTTAATAACG+GGG | 0.700100 | 5.1:+8390370 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAGAAATTCAAAAAATA+TGG | - | chr5.1:8393777-8393796 | MS.gene20270:intron | 10.0% |
| !! | AAGTTCAATTAAAAAAATAA+AGG | + | chr5.1:8393361-8393380 | None:intergenic | 10.0% |
| !!! | AATGTAAATGTAAAATTTTA+AGG | + | chr5.1:8394555-8394574 | None:intergenic | 10.0% |
| !!! | ATAACAATTTATTCAAATTT+TGG | + | chr5.1:8391120-8391139 | None:intergenic | 10.0% |
| !!! | ATTTGTTTTCAAATAATTAT+TGG | - | chr5.1:8390989-8391008 | MS.gene20270:intron | 10.0% |
| !!! | ATTTTTGAGTTTAATAAAAT+AGG | - | chr5.1:8393632-8393651 | MS.gene20270:intron | 10.0% |
| !!! | ATTTTTTTATTTTGTTTTAC+TGG | - | chr5.1:8390516-8390535 | MS.gene20270:intron | 10.0% |
| !!! | TTTTTGAGTTTAATAAAATA+GGG | - | chr5.1:8393633-8393652 | MS.gene20270:intron | 10.0% |
| !! | ACTTACAAATAAATTCTAAT+TGG | - | chr5.1:8394176-8394195 | MS.gene20270:intron | 15.0% |
| !! | TTTATAAATGAATCGATATA+TGG | + | chr5.1:8394488-8394507 | None:intergenic | 15.0% |
| !!! | AAAAAGTTCGATTTTAAAAT+AGG | - | chr5.1:8393603-8393622 | MS.gene20270:intron | 15.0% |
| !!! | AAAAGTTCGATTTTAAAATA+GGG | - | chr5.1:8393604-8393623 | MS.gene20270:intron | 15.0% |
| !!! | AATTTTCATTTATAAATTCC+AGG | - | chr5.1:8393897-8393916 | MS.gene20270:intron | 15.0% |
| !!! | ATATAAATTTTGATTAGGAT+CGG | - | chr5.1:8391055-8391074 | MS.gene20270:intron | 15.0% |
| !!! | ATGCTAATGATTATTAATTT+TGG | + | chr5.1:8394454-8394473 | None:intergenic | 15.0% |
| !!! | GAATAAATTGTTATTGTTTT+GGG | - | chr5.1:8391126-8391145 | MS.gene20270:intron | 15.0% |
| !!! | GTGTTATATAAATTTTGATT+AGG | - | chr5.1:8391050-8391069 | MS.gene20270:intron | 15.0% |
| !!! | TGAATAAATTGTTATTGTTT+TGG | - | chr5.1:8391125-8391144 | MS.gene20270:intron | 15.0% |
| !!! | TTTTGAGTTTAATAAAATAG+GGG | - | chr5.1:8393634-8393653 | MS.gene20270:intron | 15.0% |
| !! | AAAATAAAGTAGAGAAAATG+AGG | - | chr5.1:8395614-8395633 | MS.gene20270:intron | 20.0% |
| !! | AAAATCAAAAAGAACTTGAT+TGG | + | chr5.1:8393053-8393072 | None:intergenic | 20.0% |
| !! | ACAAGAATAAAAATACTAAC+CGG | + | chr5.1:8395051-8395070 | None:intergenic | 20.0% |
| !! | ACTGTGATTTAATCAAAAAT+TGG | - | chr5.1:8391648-8391667 | MS.gene20270:intron | 20.0% |
| !! | CAATCTTTCTATATAATCTT+TGG | - | chr5.1:8395985-8396004 | MS.gene20270:CDS | 20.0% |
| !! | GCATTACAATTAAAACATAA+AGG | - | chr5.1:8392825-8392844 | MS.gene20270:intron | 20.0% |
| !! | TAAAGGGATTATTATTAACA+AGG | + | chr5.1:8393679-8393698 | None:intergenic | 20.0% |
| !! | TTAATCAAAAATTGGAGATA+CGG | - | chr5.1:8391656-8391675 | MS.gene20270:intron | 20.0% |
| !! | TTCATGAGTTTGATAAAATA+GGG | + | chr5.1:8393332-8393351 | None:intergenic | 20.0% |
| !! | TTTACATTTACATTCCTTTA+AGG | - | chr5.1:8394561-8394580 | MS.gene20270:intron | 20.0% |
| !! | TTTCATGAGTTTGATAAAAT+AGG | + | chr5.1:8393333-8393352 | None:intergenic | 20.0% |
| !!! | AAACATTTTAGTTCTGTTTT+GGG | + | chr5.1:8392563-8392582 | None:intergenic | 20.0% |
| !!! | AAAGTTCGATTTTAAAATAG+GGG | - | chr5.1:8393605-8393624 | MS.gene20270:intron | 20.0% |
| !!! | AATATGAGATGTTTTCAATA+TGG | - | chr5.1:8395675-8395694 | MS.gene20270:intron | 20.0% |
| !!! | ATCAATTTAAAGTGAATCAT+GGG | + | chr5.1:8392127-8392146 | None:intergenic | 20.0% |
| !!! | ATTTTCAATGTTACTTGAAA+AGG | - | chr5.1:8391319-8391338 | MS.gene20270:intron | 20.0% |
| !!! | ATTTTTTATTCGCTTTTTTG+TGG | - | chr5.1:8392091-8392110 | MS.gene20270:intron | 20.0% |
| !!! | CTGTATAATTTGCATATTTA+AGG | - | chr5.1:8395269-8395288 | MS.gene20270:intron | 20.0% |
| !!! | GGTTTTGTAACAAATTTAAA+TGG | - | chr5.1:8391622-8391641 | MS.gene20270:CDS | 20.0% |
| !!! | TAAACATTTTAGTTCTGTTT+TGG | + | chr5.1:8392564-8392583 | None:intergenic | 20.0% |
| !!! | TTGGTTCAATCATTTAATTT+TGG | - | chr5.1:8390847-8390866 | MS.gene20270:intron | 20.0% |
| !!! | TTTGAGTTTAATAAAATAGG+GGG | - | chr5.1:8393635-8393654 | MS.gene20270:intron | 20.0% |
| !!! | TTTTTTTTTTTGAGCTTACA+AGG | - | chr5.1:8395367-8395386 | MS.gene20270:intron | 20.0% |
| ! | AAATAGAAGAGCAAACATAA+AGG | + | chr5.1:8391845-8391864 | None:intergenic | 25.0% |
| ! | AAGCTTCTGATATGATTTAA+TGG | + | chr5.1:8392212-8392231 | None:intergenic | 25.0% |
| ! | AATAATGTTAGGTAAGAGAA+AGG | - | chr5.1:8395213-8395232 | MS.gene20270:intron | 25.0% |
| ! | ACAATTAAAACATAAAGGCA+AGG | - | chr5.1:8392830-8392849 | MS.gene20270:intron | 25.0% |
| ! | ACATTATTTCATTACTGGTA+TGG | + | chr5.1:8395201-8395220 | None:intergenic | 25.0% |
| ! | ACCAGTAATGAAATAATGTT+AGG | - | chr5.1:8395202-8395221 | MS.gene20270:intron | 25.0% |
| ! | ACCTAACATTATTTCATTAC+TGG | + | chr5.1:8395206-8395225 | None:intergenic | 25.0% |
| ! | ACTTATAAATGTATTGAAGC+TGG | - | chr5.1:8391747-8391766 | MS.gene20270:intron | 25.0% |
| ! | ATAATGTTAGGTAAGAGAAA+GGG | - | chr5.1:8395214-8395233 | MS.gene20270:intron | 25.0% |
| ! | ATTGTCTTTAGATTCACTAT+TGG | + | chr5.1:8393464-8393483 | None:intergenic | 25.0% |
| ! | CAAGAATAAAAATACTAACC+GGG | + | chr5.1:8395050-8395069 | None:intergenic | 25.0% |
| ! | CTCATGTATTGAAACATTAA+AGG | + | chr5.1:8392054-8392073 | None:intergenic | 25.0% |
| ! | CTTATAAATGTATTGAAGCT+GGG | - | chr5.1:8391748-8391767 | MS.gene20270:intron | 25.0% |
| ! | CTTTAATGTTTCAATACATG+AGG | - | chr5.1:8392052-8392071 | MS.gene20270:intron | 25.0% |
| ! | GAGTAGAATAATTAACTACA+TGG | - | chr5.1:8391601-8391620 | MS.gene20270:CDS | 25.0% |
| ! | GCATTATTATTGTGTAGAAT+GGG | - | chr5.1:8394914-8394933 | MS.gene20270:CDS | 25.0% |
| ! | TAGAGTTCATCTTCTATAAT+TGG | - | chr5.1:8393697-8393716 | MS.gene20270:intron | 25.0% |
| ! | TATAGAAGATGAACTCTAAA+GGG | + | chr5.1:8393695-8393714 | None:intergenic | 25.0% |
| ! | TCATGAGTTTGATAAAATAG+GGG | + | chr5.1:8393331-8393350 | None:intergenic | 25.0% |
| ! | TCTATATGACAAGATATGAT+TGG | - | chr5.1:8392955-8392974 | MS.gene20270:intron | 25.0% |
| ! | TGCAACAGATGTAAAAATAT+AGG | + | chr5.1:8393390-8393409 | None:intergenic | 25.0% |
| ! | TGCATTATTATTGTGTAGAA+TGG | - | chr5.1:8394913-8394932 | MS.gene20270:CDS | 25.0% |
| ! | TGGTATAAAATGTTGTCAAA+TGG | - | chr5.1:8391159-8391178 | MS.gene20270:intron | 25.0% |
| ! | TTATAGAAGATGAACTCTAA+AGG | + | chr5.1:8393696-8393715 | None:intergenic | 25.0% |
| ! | TTGTCTTTAGATTCACTATT+GGG | + | chr5.1:8393463-8393482 | None:intergenic | 25.0% |
| ! | TTTGACACTAAACTAAAGAT+AGG | + | chr5.1:8393510-8393529 | None:intergenic | 25.0% |
| !! | AAAACTCGTAACTTGTAATT+TGG | - | chr5.1:8394151-8394170 | MS.gene20270:intron | 25.0% |
| !! | AAAGTAGATTTTACCTCAAA+AGG | + | chr5.1:8394832-8394851 | None:intergenic | 25.0% |
| !! | AATAGACTTAATTACGCTTT+TGG | - | chr5.1:8393303-8393322 | MS.gene20270:intron | 25.0% |
| !! | AATTGATGATTATACTTACG+AGG | - | chr5.1:8392140-8392159 | MS.gene20270:intron | 25.0% |
| !! | ACTCACAATTTCAAGATTTT+AGG | - | chr5.1:8395313-8395332 | MS.gene20270:intron | 25.0% |
| !! | ATAATGTTGTGGATTTTAGA+AGG | + | chr5.1:8392174-8392193 | None:intergenic | 25.0% |
| !! | CATCAATTTAAAGTGAATCA+TGG | + | chr5.1:8392128-8392147 | None:intergenic | 25.0% |
| !! | TTCAATGAAATGCTTTTACT+GGG | - | chr5.1:8395787-8395806 | MS.gene20270:CDS | 25.0% |
| !! | TTGCATATTTAAGGTTTGAA+TGG | - | chr5.1:8395278-8395297 | MS.gene20270:intron | 25.0% |
| !! | TTTACATGATGTTTTATGCT+AGG | - | chr5.1:8390735-8390754 | MS.gene20270:intron | 25.0% |
| !!! | AACATTTTAGTTCTGTTTTG+GGG | + | chr5.1:8392562-8392581 | None:intergenic | 25.0% |
| !!! | AAGTTCGATTTTAAAATAGG+GGG | - | chr5.1:8393606-8393625 | MS.gene20270:intron | 25.0% |
| !!! | AATTGAAAACCTCTTTTTTC+AGG | - | chr5.1:8393078-8393097 | MS.gene20270:intron | 25.0% |
| !!! | GTGTTTTTTGCACTAAAAAA+TGG | - | chr5.1:8393426-8393445 | MS.gene20270:intron | 25.0% |
| !!! | TATAATTTTGAGGATTGCAT+TGG | - | chr5.1:8394955-8394974 | MS.gene20270:CDS | 25.0% |
| !!! | TTTTTTTAGTGATATTCTCC+TGG | + | chr5.1:8393918-8393937 | None:intergenic | 25.0% |
| AACAATTTGTGAAGGTAGTA+AGG | - | chr5.1:8392603-8392622 | MS.gene20270:intron | 30.0% | |
| AACTAAAGATAGGTGAACTT+TGG | + | chr5.1:8393500-8393519 | None:intergenic | 30.0% | |
| AAGAAAAAACCTGAGAGTAA+TGG | + | chr5.1:8390445-8390464 | None:intergenic | 30.0% | |
| AAGAATTCACAAACCTGAAA+TGG | + | chr5.1:8390689-8390708 | None:intergenic | 30.0% | |
| AATCCTTGAGTATGAGTATT+AGG | - | chr5.1:8393015-8393034 | MS.gene20270:intron | 30.0% | |
| AATTCATCTAGTAAGATGAG+TGG | + | chr5.1:8394110-8394129 | None:intergenic | 30.0% | |
| ACAAAAATTACGGTCGTAAA+TGG | + | chr5.1:8392897-8392916 | None:intergenic | 30.0% | |
| ACAACATTATGTCATAGTGA+TGG | - | chr5.1:8392184-8392203 | MS.gene20270:intron | 30.0% | |
| ACAAGAACTAAGCTATTGTT+TGG | - | chr5.1:8391707-8391726 | MS.gene20270:intron | 30.0% | |
| ACTTGAAAACTTACACACAT+AGG | - | chr5.1:8394031-8394050 | MS.gene20270:intron | 30.0% | |
| AGAACTTGATTGGAGATAAA+AGG | + | chr5.1:8393043-8393062 | None:intergenic | 30.0% | |
| AGAGATTAAAGACAAGAGAA+GGG | - | chr5.1:8395479-8395498 | MS.gene20270:intron | 30.0% | |
| ATCACTATGACATAATGTTG+TGG | + | chr5.1:8392185-8392204 | None:intergenic | 30.0% | |
| ATCCTTGAGTATGAGTATTA+GGG | - | chr5.1:8393016-8393035 | MS.gene20270:intron | 30.0% | |
| ATGAAAGACATGTTTGTAGA+TGG | - | chr5.1:8392795-8392814 | MS.gene20270:intron | 30.0% | |
| ATGAGTTTGATAAAATAGGG+GGG | + | chr5.1:8393329-8393348 | None:intergenic | 30.0% | |
| ATGTGATAGCATAATTGAGA+TGG | - | chr5.1:8391479-8391498 | MS.gene20270:intron | 30.0% | |
| ATGTTATATGCCTGAAACAT+GGG | + | chr5.1:8393130-8393149 | None:intergenic | 30.0% | |
| ATTTCATTACTGGTATGGTA+TGG | + | chr5.1:8395196-8395215 | None:intergenic | 30.0% | |
| CAAACATGTCTTTCATGTAA+TGG | + | chr5.1:8392791-8392810 | None:intergenic | 30.0% | |
| CATGAGTTTGATAAAATAGG+GGG | + | chr5.1:8393330-8393349 | None:intergenic | 30.0% | |
| CGAAGTAATGAAATTATCAC+CGG | + | chr5.1:8390663-8390682 | None:intergenic | 30.0% | |
| GATGGTTTCTAAATTATCTG+AGG | - | chr5.1:8393100-8393119 | MS.gene20270:intron | 30.0% | |
| GCAGCAAATATGAAAATAGA+GGG | - | chr5.1:8393577-8393596 | MS.gene20270:intron | 30.0% | |
| GCAGTAATAGTATACATTGA+CGG | + | chr5.1:8392989-8393008 | None:intergenic | 30.0% | |
| GTAATGTTAGTGTAATCAGT+TGG | - | chr5.1:8390828-8390847 | MS.gene20270:intron | 30.0% | |
| TAAAGACCAACAATTTGTGA+AGG | - | chr5.1:8392595-8392614 | MS.gene20270:intron | 30.0% | |
| TAGAGATTAAAGACAAGAGA+AGG | - | chr5.1:8395478-8395497 | MS.gene20270:intron | 30.0% | |
| TATTTAACAGATGTTCCAGA+AGG | - | chr5.1:8394790-8394809 | MS.gene20270:intron | 30.0% | |
| TGTCTTTAGATTCACTATTG+GGG | + | chr5.1:8393462-8393481 | None:intergenic | 30.0% | |
| TTAAAAATCAAGCCTCAGAA+GGG | - | chr5.1:8394979-8394998 | MS.gene20270:CDS | 30.0% | |
| TTACTACCTTCACAAATTGT+TGG | + | chr5.1:8392604-8392623 | None:intergenic | 30.0% | |
| TTGAAACATTAAAGGATCAC+TGG | + | chr5.1:8392046-8392065 | None:intergenic | 30.0% | |
| TTTAAAAATCAAGCCTCAGA+AGG | - | chr5.1:8394978-8394997 | MS.gene20270:CDS | 30.0% | |
| ! | AATTGATTCTCTGGTAAACA+TGG | + | chr5.1:8392861-8392880 | None:intergenic | 30.0% |
| ! | ATTTTTGTCCAACCTTATAG+CGG | + | chr5.1:8393156-8393175 | None:intergenic | 30.0% |
| ! | CAATGTTACTTGAAAAGGAT+CGG | - | chr5.1:8391324-8391343 | MS.gene20270:intron | 30.0% |
| ! | CATATTTAAGGTTTGAATGG+AGG | - | chr5.1:8395281-8395300 | MS.gene20270:intron | 30.0% |
| ! | CTTCAATGAAATGCTTTTAC+TGG | - | chr5.1:8395786-8395805 | MS.gene20270:CDS | 30.0% |
| ! | GGCAAATGCTAATATGTTTT+AGG | - | chr5.1:8394197-8394216 | MS.gene20270:intron | 30.0% |
| ! | TTAGTTGAAATCAGCGTTTT+TGG | - | chr5.1:8390758-8390777 | MS.gene20270:intron | 30.0% |
| ! | TTGGATAGACTAGTCATATA+GGG | + | chr5.1:8394695-8394714 | None:intergenic | 30.0% |
| ! | TTTTACCTCAAAAGGAAACA+TGG | + | chr5.1:8394824-8394843 | None:intergenic | 30.0% |
| ! | TTTTATTCGTTGTTCCCTAA+TGG | - | chr5.1:8395015-8395034 | MS.gene20270:intron | 30.0% |
| ! | TTTTGTTCTAACTTACCCTT+TGG | + | chr5.1:8393231-8393250 | None:intergenic | 30.0% |
| ! | TTTTTGTGTGTGCCTATAAT+GGG | + | chr5.1:8393536-8393555 | None:intergenic | 30.0% |
| !! | AGGATTGTCTACTTTTAAGA+AGG | + | chr5.1:8393844-8393863 | None:intergenic | 30.0% |
| !! | AGTTTTGTGAATTGATTCTC+TGG | + | chr5.1:8392870-8392889 | None:intergenic | 30.0% |
| !! | ATTTTGGTACGTTAAACCAA+AGG | + | chr5.1:8391104-8391123 | None:intergenic | 30.0% |
| !! | CAGTAAAAGCATTTCATTGA+AGG | + | chr5.1:8395788-8395807 | None:intergenic | 30.0% |
| !! | GGATTGTCTACTTTTAAGAA+GGG | + | chr5.1:8393843-8393862 | None:intergenic | 30.0% |
| !! | TAAAGACAATCTCACTTTTG+AGG | - | chr5.1:8393474-8393493 | MS.gene20270:intron | 30.0% |
| !! | TATGTGTGTAAGTTTTCAAG+TGG | + | chr5.1:8394032-8394051 | None:intergenic | 30.0% |
| !! | TTCTATTTCTGTGAGTCTTA+AGG | + | chr5.1:8391683-8391702 | None:intergenic | 30.0% |
| !!! | ACATTTTAGTTCTGTTTTGG+GGG | + | chr5.1:8392561-8392580 | None:intergenic | 30.0% |
| !!! | ACTTTTTTTACTCGTCTTCT+GGG | - | chr5.1:8395087-8395106 | MS.gene20270:intron | 30.0% |
| !!! | CAATAGCATTTTTTCTCAAG+CGG | - | chr5.1:8392744-8392763 | MS.gene20270:intron | 30.0% |
| !!! | GTAAAATTTTAAGGTCCTCT+GGG | + | chr5.1:8394546-8394565 | None:intergenic | 30.0% |
| !!! | TGTAAAATTTTAAGGTCCTC+TGG | + | chr5.1:8394547-8394566 | None:intergenic | 30.0% |
| !!! | TTTTTTGTGTGTGCCTATAA+TGG | + | chr5.1:8393537-8393556 | None:intergenic | 30.0% |
| AAAATCTGTGATGTCAATCG+CGG | + | chr5.1:8391252-8391271 | None:intergenic | 35.0% | |
| AAACATTAAAGGATCACTGG+AGG | + | chr5.1:8392043-8392062 | None:intergenic | 35.0% | |
| AAGGATTGTAATTGGCAAGT+CGG | - | chr5.1:8395241-8395260 | MS.gene20270:intron | 35.0% | |
| AATCCAATTAGAGGCTTAGA+CGG | - | chr5.1:8394654-8394673 | MS.gene20270:intron | 35.0% | |
| ACAAAAATTCCCAAGACTCA+TGG | - | chr5.1:8392330-8392349 | MS.gene20270:intron | 35.0% | |
| ACCACGAGGAACAAAAATTA+CGG | + | chr5.1:8392907-8392926 | None:intergenic | 35.0% | |
| AGAAACCATCCTGAAAAAAG+AGG | + | chr5.1:8393090-8393109 | None:intergenic | 35.0% | |
| AGTGAGATTGCTGGAAAAAT+CGG | - | chr5.1:8390595-8390614 | MS.gene20270:intron | 35.0% | |
| ATAGGCACACACAAAAAACA+CGG | - | chr5.1:8393539-8393558 | MS.gene20270:intron | 35.0% | |
| ATATAACATCCTCCGCTATA+AGG | - | chr5.1:8393141-8393160 | MS.gene20270:intron | 35.0% | |
| ATGCATAAGAGGAAAACAGA+AGG | + | chr5.1:8390383-8390402 | None:intergenic | 35.0% | |
| CATTACTTCGATTCCATTTC+AGG | - | chr5.1:8390673-8390692 | MS.gene20270:intron | 35.0% | |
| CATTCTGAGTAAAAACCAGT+TGG | + | chr5.1:8394714-8394733 | None:intergenic | 35.0% | |
| CTGGAAATTGTTCGAAGTAA+CGG | - | chr5.1:8390535-8390554 | MS.gene20270:intron | 35.0% | |
| GAAAGAAGAAGATGCATAAG+AGG | + | chr5.1:8390394-8390413 | None:intergenic | 35.0% | |
| GACATGTTTGTAGATGGAAA+TGG | - | chr5.1:8392801-8392820 | MS.gene20270:intron | 35.0% | |
| GATGTTATATGCCTGAAACA+TGG | + | chr5.1:8393131-8393150 | None:intergenic | 35.0% | |
| GCGGATCGCATAAATAAAAA+AGG | + | chr5.1:8391233-8391252 | None:intergenic | 35.0% | |
| GGCAGCAAATATGAAAATAG+AGG | - | chr5.1:8393576-8393595 | MS.gene20270:intron | 35.0% | |
| TAAATGTATTGAAGCTGGGT+TGG | - | chr5.1:8391752-8391771 | MS.gene20270:intron | 35.0% | |
| TAGCATAATTGAGATGGCAA+AGG | - | chr5.1:8391485-8391504 | MS.gene20270:intron | 35.0% | |
| TCTATAGCATTACTGCATAG+CGG | - | chr5.1:8391195-8391214 | MS.gene20270:intron | 35.0% | |
| TGCACGTTTAATCCAATTAG+AGG | - | chr5.1:8394645-8394664 | MS.gene20270:intron | 35.0% | |
| TGTTATATGCCTGAAACATG+GGG | + | chr5.1:8393129-8393148 | None:intergenic | 35.0% | |
| TGTTCTGCACTTGCAAAATT+AGG | + | chr5.1:8391459-8391478 | None:intergenic | 35.0% | |
| TTTATCAAGTGTGCTTCTCT+TGG | + | chr5.1:8393983-8394002 | None:intergenic | 35.0% | |
| ! | AATGAAATGCTTTTACTGGG+TGG | - | chr5.1:8395790-8395809 | MS.gene20270:CDS | 35.0% |
| ! | ACACCTTTGATCAAAAGTGT+TGG | + | chr5.1:8390906-8390925 | None:intergenic | 35.0% |
| ! | ATCGATTTCATATTAGAGCG+AGG | - | chr5.1:8395159-8395178 | MS.gene20270:intron | 35.0% |
| ! | ATGAAATGCTTTTACTGGGT+GGG | - | chr5.1:8395791-8395810 | MS.gene20270:CDS | 35.0% |
| ! | CGTTGATTGAACGAATTTGA+TGG | - | chr5.1:8394585-8394604 | MS.gene20270:intron | 35.0% |
| ! | GATGTTTTCAATATGGACTC+TGG | - | chr5.1:8395682-8395701 | MS.gene20270:intron | 35.0% |
| ! | GGACAGTAGCTATAATTTTG+AGG | - | chr5.1:8394945-8394964 | MS.gene20270:CDS | 35.0% |
| ! | GTTGGATAGACTAGTCATAT+AGG | + | chr5.1:8394696-8394715 | None:intergenic | 35.0% |
| ! | GTTTTCCAGGAAGATGAATA+TGG | - | chr5.1:8390566-8390585 | MS.gene20270:intron | 35.0% |
| ! | TAATTTTTGTTCCTCGTGGT+CGG | - | chr5.1:8392907-8392926 | MS.gene20270:intron | 35.0% |
| ! | TTTTGTGTGTGCCTATAATG+GGG | + | chr5.1:8393535-8393554 | None:intergenic | 35.0% |
| !! | AACTTTGATTTGTGTTCCCT+AGG | - | chr5.1:8391401-8391420 | MS.gene20270:CDS | 35.0% |
| !! | AATTGTTCGAAGTAACGGAT+CGG | - | chr5.1:8390540-8390559 | MS.gene20270:intron | 35.0% |
| !! | ATATGACTAGTCTATCCAAC+TGG | - | chr5.1:8394696-8394715 | MS.gene20270:intron | 35.0% |
| !! | CACAAATTGTTGGTCTTTAG+TGG | + | chr5.1:8392594-8392613 | None:intergenic | 35.0% |
| !! | CTGGTTTTTACTCAGAATGT+CGG | - | chr5.1:8394715-8394734 | MS.gene20270:intron | 35.0% |
| !! | TTTTACTCAGAATGTCGGTT+TGG | - | chr5.1:8394720-8394739 | MS.gene20270:intron | 35.0% |
| !!! | ATTTTAGTTCTGTTTTGGGG+GGG | + | chr5.1:8392559-8392578 | None:intergenic | 35.0% |
| !!! | CACTTTTTTTACTCGTCTTC+TGG | - | chr5.1:8395086-8395105 | MS.gene20270:intron | 35.0% |
| !!! | CATTTTAGTTCTGTTTTGGG+GGG | + | chr5.1:8392560-8392579 | None:intergenic | 35.0% |
| !!! | GAAAACCTCTTTTTTCAGGA+TGG | - | chr5.1:8393082-8393101 | MS.gene20270:intron | 35.0% |
| !!! | GTTTTTGGTTGAGATGATTG+CGG | - | chr5.1:8390773-8390792 | MS.gene20270:intron | 35.0% |
| !!! | TTCATCTTTTTCAACAGCTC+TGG | - | chr5.1:8392237-8392256 | MS.gene20270:intron | 35.0% |
| !!! | TTGTTTTGGGATACGCTATT+TGG | - | chr5.1:8391139-8391158 | MS.gene20270:intron | 35.0% |
| AAAATCGGTGAAGGATGAGA+CGG | - | chr5.1:8390610-8390629 | MS.gene20270:intron | 40.0% | |
| AAGACGAGAGATAGGAAGAA+AGG | - | chr5.1:8393806-8393825 | MS.gene20270:intron | 40.0% | |
| ACACACAAAAAACACGGGTT+TGG | - | chr5.1:8393545-8393564 | MS.gene20270:intron | 40.0% | |
| ACTGGAGGACATTATGTTGA+CGG | + | chr5.1:8392028-8392047 | None:intergenic | 40.0% | |
| ACTTCTCCCCTTTAATAACG+GGG | + | chr5.1:8396034-8396053 | None:intergenic | 40.0% | |
| ACTTCTTCTCTACTAGTGAG+TGG | - | chr5.1:8391941-8391960 | MS.gene20270:intron | 40.0% | |
| AGGGCGAAAAGGATTGTAAT+TGG | - | chr5.1:8395233-8395252 | MS.gene20270:intron | 40.0% | |
| AGTGTCAAAGTCCCCATTAT+AGG | - | chr5.1:8393521-8393540 | MS.gene20270:intron | 40.0% | |
| AGTTGAGAATGATTTCCCAG+AGG | - | chr5.1:8394528-8394547 | MS.gene20270:intron | 40.0% | |
| ATCAAGATTGATGTTACGCG+AGG | - | chr5.1:8391521-8391540 | MS.gene20270:intron | 40.0% | |
| ATTGCTGGAAAAATCGGTGA+AGG | - | chr5.1:8390601-8390620 | MS.gene20270:intron | 40.0% | |
| ATTGTAATTGGCAAGTCGGT+TGG | - | chr5.1:8395245-8395264 | MS.gene20270:intron | 40.0% | |
| CACTTCTCCCCTTTAATAAC+GGG | + | chr5.1:8396035-8396054 | None:intergenic | 40.0% | |
| CAGTTTCTTCCATTACTCTC+AGG | - | chr5.1:8390433-8390452 | MS.gene20270:intron | 40.0% | |
| CATGTATGTCAGTGTAGCAT+TGG | + | chr5.1:8390951-8390970 | None:intergenic | 40.0% | |
| CCACTTCTCCCCTTTAATAA+CGG | + | chr5.1:8396036-8396055 | None:intergenic | 40.0% | |
| CGAAAACGGTTAAAGCCAAT+TGG | - | chr5.1:8390330-8390349 | MS.gene20270:CDS | 40.0% | |
| CGTTATTAAAGGGGAGAAGT+GGG | - | chr5.1:8396034-8396053 | MS.gene20270:CDS | 40.0% | |
| CGTTCAATCAACGACCTTAA+AGG | + | chr5.1:8394578-8394597 | None:intergenic | 40.0% | |
| GAAATGCTGAGATTCACAAC+TGG | + | chr5.1:8395860-8395879 | None:intergenic | 40.0% | |
| GACCCTAATACTCATACTCA+AGG | + | chr5.1:8393021-8393040 | None:intergenic | 40.0% | |
| GATTATACTTACGAGGAGTG+AGG | - | chr5.1:8392147-8392166 | MS.gene20270:intron | 40.0% | |
| GCGTGACTTTAGGCAAAAAA+AGG | - | chr5.1:8393754-8393773 | MS.gene20270:intron | 40.0% | |
| GGTTGCTACAAAGTGGATAA+GGG | - | chr5.1:8396055-8396074 | MS.gene20270:CDS | 40.0% | |
| GTACAAAGGGAATCAGAACA+AGG | - | chr5.1:8391559-8391578 | MS.gene20270:intron | 40.0% | |
| GTGAAACAGAAAAGCAGTGT+TGG | + | chr5.1:8392531-8392550 | None:intergenic | 40.0% | |
| TAACAGATGTTCCAGAAGGT+GGG | - | chr5.1:8394794-8394813 | MS.gene20270:intron | 40.0% | |
| TACATTAGCAAGCGAGCATT+GGG | + | chr5.1:8392380-8392399 | None:intergenic | 40.0% | |
| TAGGCACACACAAAAAACAC+GGG | - | chr5.1:8393540-8393559 | MS.gene20270:intron | 40.0% | |
| TATGTTTATCAGCGCTTCTG+AGG | - | chr5.1:8392260-8392279 | MS.gene20270:intron | 40.0% | |
| TCAAGATTGATGTTACGCGA+GGG | - | chr5.1:8391522-8391541 | MS.gene20270:intron | 40.0% | |
| TCACTAGTAGAGAAGAAGTC+AGG | + | chr5.1:8391940-8391959 | None:intergenic | 40.0% | |
| TCGCGTAACATCAATCTTGA+TGG | + | chr5.1:8391522-8391541 | None:intergenic | 40.0% | |
| TCGGTAAATAGCACCTATAG+TGG | - | chr5.1:8391074-8391093 | MS.gene20270:intron | 40.0% | |
| TTAACAGATGTTCCAGAAGG+TGG | - | chr5.1:8394793-8394812 | MS.gene20270:intron | 40.0% | |
| TTACATTAGCAAGCGAGCAT+TGG | + | chr5.1:8392381-8392400 | None:intergenic | 40.0% | |
| TTGTAAGTCACTGTGTCAGT+GGG | + | chr5.1:8393869-8393888 | None:intergenic | 40.0% | |
| ! | AACAGAAAAGCAGTGTTGGA+AGG | + | chr5.1:8392527-8392546 | None:intergenic | 40.0% |
| ! | ACCGTAATTTTTGTTCCTCG+TGG | - | chr5.1:8392903-8392922 | MS.gene20270:intron | 40.0% |
| ! | AGAAACAGAGGAAGGTACAA+AGG | - | chr5.1:8391545-8391564 | MS.gene20270:intron | 40.0% |
| ! | CTTGGGAATTTTTGTTGCTC+TGG | + | chr5.1:8392325-8392344 | None:intergenic | 40.0% |
| ! | GAAACAGAGGAAGGTACAAA+GGG | - | chr5.1:8391546-8391565 | MS.gene20270:intron | 40.0% |
| ! | GCACCAACACTTTTGATCAA+AGG | - | chr5.1:8390900-8390919 | MS.gene20270:intron | 40.0% |
| ! | GTTTTCAATATGGACTCTGG+AGG | - | chr5.1:8395685-8395704 | MS.gene20270:intron | 40.0% |
| ! | TAGGAAAGTATAAAGCGCGT+GGG | + | chr5.1:8391440-8391459 | None:intergenic | 40.0% |
| ! | TCTTGCTAACTTGCGCTTTA+AGG | + | chr5.1:8394326-8394345 | None:intergenic | 40.0% |
| ! | TTAGGAAAGTATAAAGCGCG+TGG | + | chr5.1:8391441-8391460 | None:intergenic | 40.0% |
| ! | TTGAAGCTGGGTTGGATTAT+TGG | - | chr5.1:8391760-8391779 | MS.gene20270:intron | 40.0% |
| ! | TTTTGCCTAAAGTCACGCAA+AGG | + | chr5.1:8393752-8393771 | None:intergenic | 40.0% |
| !! | ACACACATAGGTTGATGAGT+CGG | - | chr5.1:8394043-8394062 | MS.gene20270:intron | 40.0% |
| !! | CTTTTGATCAAAGGTGTGTC+TGG | - | chr5.1:8390909-8390928 | MS.gene20270:intron | 40.0% |
| !! | GTCGGTTTTACTCAGAATGT+CGG | - | chr5.1:8394733-8394752 | MS.gene20270:intron | 40.0% |
| !! | TTCTTTCTCGCTGGTTTCTT+CGG | - | chr5.1:8390407-8390426 | MS.gene20270:intron | 40.0% |
| AACACGGGTTTGGAGAAAAG+TGG | - | chr5.1:8393555-8393574 | MS.gene20270:intron | 45.0% | |
| AACAGATGTTCCAGAAGGTG+GGG | - | chr5.1:8394795-8394814 | MS.gene20270:intron | 45.0% | |
| AACATCCTCCGCTATAAGGT+TGG | - | chr5.1:8393145-8393164 | MS.gene20270:intron | 45.0% | |
| AAGTCACGCAAAGGTAGAGA+CGG | + | chr5.1:8393743-8393762 | None:intergenic | 45.0% | |
| AATTCCCAAGACTCATGGAG+AGG | - | chr5.1:8392335-8392354 | MS.gene20270:intron | 45.0% | |
| ACCGGGTCAATTGTACCATT+AGG | + | chr5.1:8395033-8395052 | None:intergenic | 45.0% | |
| ACTCTCCAGCATGCAACAAA+CGG | + | chr5.1:8390640-8390659 | None:intergenic | 45.0% | |
| AGAGAAGGGACTTACATCAC+AGG | - | chr5.1:8395493-8395512 | MS.gene20270:intron | 45.0% | |
| AGGTAAGAGAAAGGGCGAAA+AGG | - | chr5.1:8395222-8395241 | MS.gene20270:intron | 45.0% | |
| AGTAGAGAAGAAGTCAGGAC+TGG | + | chr5.1:8391935-8391954 | None:intergenic | 45.0% | |
| CAAAAATGAAGCCACCTGCA+TGG | + | chr5.1:8394767-8394786 | None:intergenic | 45.0% | |
| CCCTAATGGTACAATTGACC+CGG | - | chr5.1:8395029-8395048 | MS.gene20270:intron | 45.0% | |
| CCGGGTCAATTGTACCATTA+GGG | + | chr5.1:8395032-8395051 | None:intergenic | 45.0% | |
| CCGTTATTAAAGGGGAGAAG+TGG | - | chr5.1:8396033-8396052 | MS.gene20270:CDS | 45.0% | |
| CGAGAGATAGGAAGAAAGGT+AGG | - | chr5.1:8393810-8393829 | MS.gene20270:intron | 45.0% | |
| CTATGATGCATTCAATCCCG+CGG | - | chr5.1:8393186-8393205 | MS.gene20270:intron | 45.0% | |
| CTCTACCTTTGCGTGACTTT+AGG | - | chr5.1:8393744-8393763 | MS.gene20270:intron | 45.0% | |
| CTTCGTTCTCAAGCTCCAAT+TGG | + | chr5.1:8390348-8390367 | None:intergenic | 45.0% | |
| CTTGTAAGTCACTGTGTCAG+TGG | + | chr5.1:8393870-8393889 | None:intergenic | 45.0% | |
| GATCCGTCTAAGCCTCTAAT+TGG | + | chr5.1:8394660-8394679 | None:intergenic | 45.0% | |
| GGAAGACTTCATGCAGTTCT+TGG | - | chr5.1:8391962-8391981 | MS.gene20270:intron | 45.0% | |
| GGACGTAAAAGACGAGAGAT+AGG | - | chr5.1:8393798-8393817 | MS.gene20270:intron | 45.0% | |
| GGGTTGCTACAAAGTGGATA+AGG | - | chr5.1:8396054-8396073 | MS.gene20270:CDS | 45.0% | |
| GTAGAGAAGAAGTCAGGACT+GGG | + | chr5.1:8391934-8391953 | None:intergenic | 45.0% | |
| GTTACCTCTCCATGAGTCTT+GGG | + | chr5.1:8392342-8392361 | None:intergenic | 45.0% | |
| TCACGCCATATTCATCTTCC+TGG | + | chr5.1:8390574-8390593 | None:intergenic | 45.0% | |
| TCGACGAGTCATGACATGTT+CGG | - | chr5.1:8391014-8391033 | MS.gene20270:intron | 45.0% | |
| TGCATCTTCTTCTTTCTCGC+TGG | - | chr5.1:8390398-8390417 | MS.gene20270:intron | 45.0% | |
| TGTGTAGAATGGGTCGAACA+TGG | - | chr5.1:8394924-8394943 | MS.gene20270:CDS | 45.0% | |
| TGTTACCTCTCCATGAGTCT+TGG | + | chr5.1:8392343-8392362 | None:intergenic | 45.0% | |
| TTATTCTTACTCCGACCACG+AGG | + | chr5.1:8392921-8392940 | None:intergenic | 45.0% | |
| TTTGGCAGACATCACTCCAT+GGG | - | chr5.1:8396003-8396022 | MS.gene20270:CDS | 45.0% | |
| TTTGTCCAACCTTATAGCGG+AGG | + | chr5.1:8393153-8393172 | None:intergenic | 45.0% | |
| ! | ACATTAGCAAGCGAGCATTG+GGG | + | chr5.1:8392379-8392398 | None:intergenic | 45.0% |
| ! | GGAGACCATGTTTCCTTTTG+AGG | - | chr5.1:8394816-8394835 | MS.gene20270:intron | 45.0% |
| !! | AGAAGTGGGTTGCTACAAAG+TGG | - | chr5.1:8396048-8396067 | MS.gene20270:CDS | 45.0% |
| !! | CATCACGCAAAAGCATTGAC+AGG | + | chr5.1:8392683-8392702 | None:intergenic | 45.0% |
| !! | TTACCCTTTGGCTCTCTTGT+GGG | + | chr5.1:8393219-8393238 | None:intergenic | 45.0% |
| !! | AAAGTTAATATAATAATATT+TGG | - | chr5.1:8394240-8394259 | MS.gene20270:intron | 5.0% |
| !! | GAATAAAAAATAATATATTT+CGG | + | chr5.1:8392082-8392101 | None:intergenic | 5.0% |
| ACAAGTCATGTGCCGTGATC+GGG | + | chr5.1:8394078-8394097 | None:intergenic | 50.0% | |
| AGTCACTGTGTCAGTGGGTA+AGG | + | chr5.1:8393864-8393883 | None:intergenic | 50.0% | |
| ATCAAGCCTCAGAAGGGAGA+CGG | - | chr5.1:8394985-8395004 | MS.gene20270:intron | 50.0% | |
| CACAAGTCATGTGCCGTGAT+CGG | + | chr5.1:8394079-8394098 | None:intergenic | 50.0% | |
| CAGGATTACTGCAGCATCGT+TGG | + | chr5.1:8392664-8392683 | None:intergenic | 50.0% | |
| CGCAAAGGTAGAGACGGAAA+AGG | + | chr5.1:8393737-8393756 | None:intergenic | 50.0% | |
| CGGAGTTCAAATCCCGATCA+CGG | - | chr5.1:8394063-8394082 | MS.gene20270:intron | 50.0% | |
| CTGAGATTCACAACTGGTGC+AGG | + | chr5.1:8395854-8395873 | None:intergenic | 50.0% | |
| CTGAGGAATCCCCATGTTTC+AGG | - | chr5.1:8393117-8393136 | MS.gene20270:intron | 50.0% | |
| CTTTGGCAGACATCACTCCA+TGG | - | chr5.1:8396002-8396021 | MS.gene20270:CDS | 50.0% | |
| GAGCTGCCCCGTTATTAAAG+GGG | - | chr5.1:8396025-8396044 | MS.gene20270:CDS | 50.0% | |
| GCATTCAATCCCGCGGAATA+TGG | - | chr5.1:8393193-8393212 | MS.gene20270:CDS | 50.0% | |
| GGAGCTGCCCCGTTATTAAA+GGG | - | chr5.1:8396024-8396043 | MS.gene20270:CDS | 50.0% | |
| GGGTTCCAGCTCAAAACCTA+GGG | + | chr5.1:8391420-8391439 | None:intergenic | 50.0% | |
| TGGGTTCCAGCTCAAAACCT+AGG | + | chr5.1:8391421-8391440 | None:intergenic | 50.0% | |
| TTGTTGCATGCTGGAGAGTC+CGG | - | chr5.1:8390641-8390660 | MS.gene20270:intron | 50.0% | |
| ! | AACGGATCGGTGAGTTTTCC+AGG | - | chr5.1:8390553-8390572 | MS.gene20270:intron | 50.0% |
| ! | AGCGCTTCTGAGGACAAAAC+GGG | - | chr5.1:8392270-8392289 | MS.gene20270:intron | 50.0% |
| ! | CAGCGCTTCTGAGGACAAAA+CGG | - | chr5.1:8392269-8392288 | MS.gene20270:intron | 50.0% |
| !! | AACCAAAGGAGCGCCACTAT+AGG | + | chr5.1:8391090-8391109 | None:intergenic | 50.0% |
| !! | ATTAGCAAGCGAGCATTGGG+GGG | + | chr5.1:8392377-8392396 | None:intergenic | 50.0% |
| !! | CATTAGCAAGCGAGCATTGG+GGG | + | chr5.1:8392378-8392397 | None:intergenic | 50.0% |
| !! | CTTACCCTTTGGCTCTCTTG+TGG | + | chr5.1:8393220-8393239 | None:intergenic | 50.0% |
| !! | TGTCGGTTTGGTTACCATGC+AGG | - | chr5.1:8394750-8394769 | MS.gene20270:intron | 50.0% |
| !!! | GTGTTCCCTAGGTTTTGAGC+TGG | - | chr5.1:8391412-8391431 | MS.gene20270:CDS | 50.0% |
| !!! | GTTCTGTTTTGGGGGGGAAA+TGG | + | chr5.1:8392553-8392572 | None:intergenic | 50.0% |
| AACATGGTCTCCCCACCTTC+TGG | + | chr5.1:8394808-8394827 | None:intergenic | 55.0% | |
| AGAAGTCCGTCTCCCTTCTG+AGG | + | chr5.1:8394994-8395013 | None:intergenic | 55.0% | |
| ATGGCCCACAAGAGAGCCAA+AGG | - | chr5.1:8393212-8393231 | MS.gene20270:CDS | 55.0% | |
| CACCTATAGTGGCGCTCCTT+TGG | - | chr5.1:8391085-8391104 | MS.gene20270:intron | 55.0% | |
| CTCTTGTGGGCCATATTCCG+CGG | + | chr5.1:8393206-8393225 | None:intergenic | 55.0% | |
| GGGAGCTGCCCCGTTATTAA+AGG | - | chr5.1:8396023-8396042 | MS.gene20270:CDS | 55.0% | |
| GTTACGCGAGGGAGAAACAG+AGG | - | chr5.1:8391533-8391552 | MS.gene20270:intron | 55.0% | |
| TCTTGTGGGCCATATTCCGC+GGG | + | chr5.1:8393205-8393224 | None:intergenic | 55.0% | |
| TGGCCCACAAGAGAGCCAAA+GGG | - | chr5.1:8393213-8393232 | MS.gene20270:CDS | 55.0% | |
| TGGCGTGAGAGTGAGATTGC+TGG | - | chr5.1:8390586-8390605 | MS.gene20270:intron | 55.0% | |
| TTACTGGGTGGGTGAGACGA+AGG | - | chr5.1:8395802-8395821 | MS.gene20270:CDS | 55.0% | |
| ! | GAGCACCGTTTGTTGCATGC+TGG | - | chr5.1:8390632-8390651 | MS.gene20270:intron | 55.0% |
| ! | TAATAACGGGGCAGCTCCCA+TGG | + | chr5.1:8396022-8396041 | None:intergenic | 55.0% |
| !! | CGGTTTGGTTACCATGCAGG+TGG | - | chr5.1:8394753-8394772 | MS.gene20270:intron | 55.0% |
| CGCGAGGGAGAAACAGAGGA+AGG | - | chr5.1:8391537-8391556 | MS.gene20270:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 8390323 | 8396100 | 8390323 | ID=MS.gene20270 |
| chr5.1 | mRNA | 8390323 | 8396100 | 8390323 | ID=MS.gene20270.t1;Parent=MS.gene20270 |
| chr5.1 | exon | 8395969 | 8396100 | 8395969 | ID=MS.gene20270.t1.exon1;Parent=MS.gene20270.t1 |
| chr5.1 | CDS | 8395969 | 8396100 | 8395969 | ID=cds.MS.gene20270.t1;Parent=MS.gene20270.t1 |
| chr5.1 | exon | 8395729 | 8395848 | 8395729 | ID=MS.gene20270.t1.exon2;Parent=MS.gene20270.t1 |
| chr5.1 | CDS | 8395729 | 8395848 | 8395729 | ID=cds.MS.gene20270.t1;Parent=MS.gene20270.t1 |
| chr5.1 | exon | 8394843 | 8395000 | 8394843 | ID=MS.gene20270.t1.exon3;Parent=MS.gene20270.t1 |
| chr5.1 | CDS | 8394843 | 8395000 | 8394843 | ID=cds.MS.gene20270.t1;Parent=MS.gene20270.t1 |
| chr5.1 | exon | 8394067 | 8394169 | 8394067 | ID=MS.gene20270.t1.exon4;Parent=MS.gene20270.t1 |
| chr5.1 | CDS | 8394067 | 8394169 | 8394067 | ID=cds.MS.gene20270.t1;Parent=MS.gene20270.t1 |
| chr5.1 | exon | 8393189 | 8393284 | 8393189 | ID=MS.gene20270.t1.exon5;Parent=MS.gene20270.t1 |
| chr5.1 | CDS | 8393189 | 8393284 | 8393189 | ID=cds.MS.gene20270.t1;Parent=MS.gene20270.t1 |
| chr5.1 | exon | 8391586 | 8391651 | 8391586 | ID=MS.gene20270.t1.exon6;Parent=MS.gene20270.t1 |
| chr5.1 | CDS | 8391586 | 8391651 | 8391586 | ID=cds.MS.gene20270.t1;Parent=MS.gene20270.t1 |
| chr5.1 | exon | 8391373 | 8391492 | 8391373 | ID=MS.gene20270.t1.exon7;Parent=MS.gene20270.t1 |
| chr5.1 | CDS | 8391373 | 8391492 | 8391373 | ID=cds.MS.gene20270.t1;Parent=MS.gene20270.t1 |
| chr5.1 | exon | 8390323 | 8390412 | 8390323 | ID=MS.gene20270.t1.exon8;Parent=MS.gene20270.t1 |
| chr5.1 | CDS | 8390323 | 8390412 | 8390323 | ID=cds.MS.gene20270.t1;Parent=MS.gene20270.t1 |
| Gene Sequence |
| Protein sequence |
