Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20308.t1 | XP_003611556.1 | 97.7 | 385 | 9 | 0 | 1 | 385 | 15 | 399 | 7.90E-231 | 809.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20308.t1 | Q564G7 | 64.4 | 393 | 123 | 4 | 1 | 383 | 1 | 386 | 1.3e-152 | 540.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20308.t1 | G7K2G3 | 97.7 | 385 | 9 | 0 | 1 | 385 | 15 | 399 | 5.7e-231 | 809.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene20308 | 0.81442 | 1.55E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20308.t1 | MTR_5g015260 | 97.662 | 385 | 9 | 0 | 1 | 385 | 15 | 399 | 0.0 | 788 |
| MS.gene20308.t1 | MTR_4g097240 | 63.566 | 387 | 128 | 4 | 7 | 385 | 8 | 389 | 0.0 | 516 |
| MS.gene20308.t1 | MTR_4g097230 | 58.438 | 320 | 124 | 2 | 67 | 383 | 60 | 373 | 1.51e-142 | 412 |
| MS.gene20308.t1 | MTR_4g108940 | 47.003 | 317 | 129 | 6 | 71 | 384 | 100 | 380 | 1.58e-98 | 300 |
| MS.gene20308.t1 | MTR_4g119880 | 45.833 | 312 | 132 | 5 | 76 | 384 | 107 | 384 | 3.11e-98 | 300 |
| MS.gene20308.t1 | MTR_7g108675 | 45.928 | 307 | 129 | 5 | 81 | 384 | 124 | 396 | 2.99e-97 | 298 |
| MS.gene20308.t1 | MTR_8g058553 | 45.928 | 307 | 129 | 5 | 81 | 384 | 124 | 396 | 8.93e-97 | 299 |
| MS.gene20308.t1 | MTR_3g037340 | 40.000 | 390 | 186 | 9 | 5 | 384 | 34 | 385 | 2.71e-94 | 290 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20308.t1 | AT4G37690 | 60.938 | 384 | 145 | 2 | 1 | 383 | 1 | 380 | 7.46e-176 | 497 |
| MS.gene20308.t1 | AT2G22900 | 62.694 | 386 | 141 | 2 | 1 | 385 | 16 | 399 | 1.04e-175 | 497 |
| MS.gene20308.t1 | AT5G07720 | 40.360 | 389 | 187 | 6 | 3 | 382 | 35 | 387 | 6.76e-102 | 310 |
| MS.gene20308.t1 | AT3G62720 | 47.883 | 307 | 123 | 5 | 81 | 384 | 117 | 389 | 5.28e-99 | 302 |
| MS.gene20308.t1 | AT3G62720 | 47.883 | 307 | 123 | 5 | 81 | 384 | 117 | 389 | 5.28e-99 | 302 |
| MS.gene20308.t1 | AT1G74380 | 45.338 | 311 | 134 | 4 | 76 | 384 | 114 | 390 | 8.63e-98 | 299 |
| MS.gene20308.t1 | AT4G02500 | 44.872 | 312 | 135 | 3 | 76 | 384 | 113 | 390 | 1.15e-96 | 296 |
| MS.gene20308.t1 | AT1G18690 | 42.982 | 342 | 157 | 5 | 43 | 382 | 141 | 446 | 2.46e-96 | 297 |
| MS.gene20308.t1 | AT1G18690 | 42.982 | 342 | 157 | 5 | 43 | 382 | 141 | 446 | 2.46e-96 | 297 |
| MS.gene20308.t1 | AT1G18690 | 42.982 | 342 | 157 | 5 | 43 | 382 | 141 | 446 | 2.46e-96 | 297 |
| MS.gene20308.t1 | AT1G18690 | 42.982 | 342 | 157 | 5 | 43 | 382 | 141 | 446 | 2.46e-96 | 297 |
| MS.gene20308.t1 | AT4G38310 | 69.231 | 117 | 35 | 1 | 64 | 179 | 1 | 117 | 1.10e-55 | 179 |
Find 104 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTAAGATGTTTGCTTATT+GGG | 0.175052 | 5.1:-7852851 | MS.gene20308:CDS |
| TTCATCCCAGTCGTCTATTT+TGG | 0.194915 | 5.1:+7853071 | None:intergenic |
| ATCCTAAGATGTTTGCTTAT+TGG | 0.207679 | 5.1:-7852852 | MS.gene20308:CDS |
| TTTAATAGGGGTCCAATTAT+TGG | 0.208961 | 5.1:-7851961 | MS.gene20308:intron |
| TATAGAAGAAGATTTGTTTC+TGG | 0.226424 | 5.1:+7853308 | None:intergenic |
| CACCAGATCCACTCTGCTTC+TGG | 0.247207 | 5.1:+7852790 | None:intergenic |
| ACATTGGTCACACCAATAAT+TGG | 0.288105 | 5.1:+7851949 | None:intergenic |
| TTACCCCATTCTTCATAATC+TGG | 0.308324 | 5.1:+7852559 | None:intergenic |
| GTCATGGTATACTCCATTTC+AGG | 0.314443 | 5.1:+7853096 | None:intergenic |
| ATAGAAGAAGATTTGTTTCT+GGG | 0.318466 | 5.1:+7853309 | None:intergenic |
| ATGGAGGCTTGGGCTGGAAT+GGG | 0.324947 | 5.1:-7852592 | MS.gene20308:CDS |
| CATGGAGGCTTGGGCTGGAA+TGG | 0.334539 | 5.1:-7852593 | MS.gene20308:CDS |
| GCCCAATAAGCAAACATCTT+AGG | 0.336434 | 5.1:+7852850 | None:intergenic |
| AATATTACTTCGAGGGGTAT+TGG | 0.338476 | 5.1:-7852417 | MS.gene20308:CDS |
| GTGGATTACTCTCGTATTCA+TGG | 0.344402 | 5.1:-7852907 | MS.gene20308:CDS |
| TCTGATGGCTTCCTCTTCCT+TGG | 0.345544 | 5.1:-7853279 | MS.gene20308:CDS |
| TCAATGGTCATTAGATTTCA+TGG | 0.346153 | 5.1:-7852611 | MS.gene20308:CDS |
| CAGGATCATCGTAGAATGTT+TGG | 0.347067 | 5.1:+7853115 | None:intergenic |
| AACAACAAATGGTCACCTAT+TGG | 0.350530 | 5.1:+7852949 | None:intergenic |
| TCTTCATAATCTGGGCTTTG+TGG | 0.354799 | 5.1:+7852568 | None:intergenic |
| GATCATAACCTTGTTGTTCA+TGG | 0.356395 | 5.1:-7852706 | MS.gene20308:CDS |
| ATCATTGCAGCTTTCACAAC+AGG | 0.362566 | 5.1:+7852820 | None:intergenic |
| ATTAGATTTCATGGAGGCTT+GGG | 0.362925 | 5.1:-7852602 | MS.gene20308:CDS |
| CATGAGAAACGGAGCTGGAC+TGG | 0.370520 | 5.1:-7852667 | MS.gene20308:CDS |
| ATATTACTTCGAGGGGTATT+GGG | 0.374107 | 5.1:-7852416 | MS.gene20308:CDS |
| CATTAGATTTCATGGAGGCT+TGG | 0.381012 | 5.1:-7852603 | MS.gene20308:CDS |
| GAAGATTTGTTTCTGGGAAT+GGG | 0.385239 | 5.1:+7853315 | None:intergenic |
| GTGAGGTTGTCGCTTGGGAT+GGG | 0.386446 | 5.1:+7853204 | None:intergenic |
| TATTTGAAAGATGCTGGTTA+TGG | 0.388530 | 5.1:-7852268 | MS.gene20308:CDS |
| AGAAGATTTGTTTCTGGGAA+TGG | 0.391546 | 5.1:+7853314 | None:intergenic |
| TACCCCATTCTTCATAATCT+GGG | 0.392557 | 5.1:+7852560 | None:intergenic |
| TGAAGAATCTTAACAACAAA+TGG | 0.394171 | 5.1:+7852938 | None:intergenic |
| CTGGTTATGGTAAAGGAAGT+TGG | 0.399264 | 5.1:-7852255 | MS.gene20308:CDS |
| GAAGAGTATTTGAAAGATGC+TGG | 0.407850 | 5.1:-7852274 | MS.gene20308:CDS |
| CTTCATAATCTGGGCTTTGT+GGG | 0.412052 | 5.1:+7852569 | None:intergenic |
| TCTTCTATATTTCTCTCTGA+TGG | 0.418803 | 5.1:-7853294 | MS.gene20308:CDS |
| ATCCAGAAGCAGAGTGGATC+TGG | 0.420997 | 5.1:-7852792 | MS.gene20308:CDS |
| GGTGAGGTTGTCGCTTGGGA+TGG | 0.421496 | 5.1:+7853203 | None:intergenic |
| TTAAGGTGAGGTTGTCGCTT+GGG | 0.431209 | 5.1:+7853199 | None:intergenic |
| GATGGCTTCCTCTTCCTTGG+AGG | 0.432600 | 5.1:-7853276 | MS.gene20308:CDS |
| AGCAAAGGAAAGAGTGTTGA+TGG | 0.438346 | 5.1:-7853004 | MS.gene20308:CDS |
| ATAACCTTGTTGTTCATGGC+TGG | 0.442241 | 5.1:-7852702 | MS.gene20308:CDS |
| AAAGATGCTGGTTATGGTAA+AGG | 0.444724 | 5.1:-7852262 | MS.gene20308:CDS |
| GATTTCATGGAGGCTTGGGC+TGG | 0.447837 | 5.1:-7852598 | MS.gene20308:CDS |
| AAGCCCAGATTATGAAGAAT+GGG | 0.454167 | 5.1:-7852563 | MS.gene20308:CDS |
| ATTCTACGATGATCCTGAAA+TGG | 0.454311 | 5.1:-7853109 | MS.gene20308:CDS |
| GGTGGATCAAAGCGCAGATC+GGG | 0.455974 | 5.1:+7853141 | None:intergenic |
| TTTCTCGATCGCGATCAGAT+AGG | 0.459063 | 5.1:+7852474 | None:intergenic |
| CCTGTAAAATGTGTAACAAA+TGG | 0.462913 | 5.1:+7852226 | None:intergenic |
| CATCATCCGTCTTTCTCTGC+AGG | 0.478033 | 5.1:-7853027 | MS.gene20308:CDS |
| TCTCCGTGCAAGAATCCAAT+AGG | 0.480437 | 5.1:-7852964 | MS.gene20308:CDS |
| TGAGGTTGTCGCTTGGGATG+GGG | 0.489086 | 5.1:+7853205 | None:intergenic |
| GCCTGTCTGATCGTCTGACT+CGG | 0.492017 | 5.1:+7852501 | None:intergenic |
| GAAAGAGTGTTGATGGTCAC+TGG | 0.495025 | 5.1:-7852997 | MS.gene20308:CDS |
| TCATTATACTTCCCACTACA+AGG | 0.496339 | 5.1:+7852196 | None:intergenic |
| GCATGACGCCTTCTTAACTT+AGG | 0.496571 | 5.1:+7852331 | None:intergenic |
| CTCACTTGATCCATGAGAAA+CGG | 0.497365 | 5.1:-7852678 | MS.gene20308:CDS |
| AAAGCCCAGATTATGAAGAA+TGG | 0.499353 | 5.1:-7852564 | MS.gene20308:CDS |
| CAGTCCAGCTCCGTTTCTCA+TGG | 0.499397 | 5.1:+7852668 | None:intergenic |
| ATGAGAAACGGAGCTGGACT+GGG | 0.501194 | 5.1:-7852666 | MS.gene20308:CDS |
| ATTTGTCTTTAAAAGTTGAC+CGG | 0.502606 | 5.1:+7852530 | None:intergenic |
| AAGAATGGGGTAAGACTCTC+CGG | 0.506398 | 5.1:-7852549 | MS.gene20308:CDS |
| ATTGGATTCTTGCACGGAGA+AGG | 0.509563 | 5.1:+7852967 | None:intergenic |
| TTTAAGGTGAGGTTGTCGCT+TGG | 0.510380 | 5.1:+7853198 | None:intergenic |
| GCTTCCTCTCAAACGTTACA+AGG | 0.512911 | 5.1:-7852728 | MS.gene20308:CDS |
| TCGTAGAATGTTTGGTCTGG+TGG | 0.513684 | 5.1:+7853123 | None:intergenic |
| AGATGCATTGTTCACCGACA+TGG | 0.516301 | 5.1:-7852758 | MS.gene20308:CDS |
| GCTGACAAGATTTATCTAGA+AGG | 0.520122 | 5.1:-7852442 | MS.gene20308:CDS |
| CCCGAGTCAGACGATCAGAC+AGG | 0.525329 | 5.1:-7852502 | MS.gene20308:CDS |
| TCATCGTAGAATGTTTGGTC+TGG | 0.529616 | 5.1:+7853120 | None:intergenic |
| TGACCACCAAAATAGACGAC+TGG | 0.534163 | 5.1:-7853077 | MS.gene20308:CDS |
| GGGTATTGGGAAGAGATAGT+AGG | 0.535734 | 5.1:-7852403 | MS.gene20308:CDS |
| GTCTTTCTCTGCAGGAGCAA+AGG | 0.536163 | 5.1:-7853019 | MS.gene20308:CDS |
| AAAATGCTCCTCCAAGGAAG+AGG | 0.536323 | 5.1:+7853268 | None:intergenic |
| TGATCCATGAGAAACGGAGC+TGG | 0.538704 | 5.1:-7852672 | MS.gene20308:CDS |
| GAGAAAGTGAGTGAAGCTTA+TGG | 0.543266 | 5.1:-7852307 | MS.gene20308:CDS |
| TTTGCTCCTGCAGAGAAAGA+CGG | 0.551182 | 5.1:+7853021 | None:intergenic |
| TGTTGTGAAAGCTGCAATGA+TGG | 0.556012 | 5.1:-7852818 | MS.gene20308:CDS |
| TGGTGGATCAAAGCGCAGAT+CGG | 0.556690 | 5.1:+7853140 | None:intergenic |
| ACAGGTTGTCAACCTTGTAG+TGG | 0.558357 | 5.1:-7852208 | MS.gene20308:CDS |
| GCTTGGGATGGGGTTTGTGA+AGG | 0.559871 | 5.1:+7853215 | None:intergenic |
| AAGTTGAGCCTAAGTTAAGA+AGG | 0.567104 | 5.1:-7852339 | MS.gene20308:CDS |
| CCTGTCTGATCGTCTGACTC+GGG | 0.569637 | 5.1:+7852502 | None:intergenic |
| TACAGAATCTTACTAGACAT+TGG | 0.585116 | 5.1:+7851933 | None:intergenic |
| CAGGTTGTCAACCTTGTAGT+GGG | 0.588604 | 5.1:-7852207 | MS.gene20308:CDS |
| GAGCTGAAAATGCTCCTCCA+AGG | 0.589197 | 5.1:+7853262 | None:intergenic |
| GAAGGCGAATATTACTTCGA+GGG | 0.591672 | 5.1:-7852424 | MS.gene20308:CDS |
| AGAAGGCGAATATTACTTCG+AGG | 0.599202 | 5.1:-7852425 | MS.gene20308:CDS |
| TGATCCTTGTAACGTTTGAG+AGG | 0.599914 | 5.1:+7852724 | None:intergenic |
| TCACCTATTGGATTCTTGCA+CGG | 0.608907 | 5.1:+7852961 | None:intergenic |
| GACCACCAAAATAGACGACT+GGG | 0.610284 | 5.1:-7853076 | MS.gene20308:CDS |
| CAGAAGCAGAGTGGATCTGG+TGG | 0.614112 | 5.1:-7852789 | MS.gene20308:CDS |
| AGCTGGACTGGGTTAAACGC+TGG | 0.635344 | 5.1:-7852655 | MS.gene20308:CDS |
| TCATTGCAGCTTTCACAACA+GGG | 0.636937 | 5.1:+7852821 | None:intergenic |
| CGTTTCTCATGGATCAAGTG+AGG | 0.643998 | 5.1:+7852679 | None:intergenic |
| AAGGCGAATATTACTTCGAG+GGG | 0.647787 | 5.1:-7852423 | MS.gene20308:CDS |
| AGGAAGCTTGAAATCCATGT+CGG | 0.666037 | 5.1:+7852744 | None:intergenic |
| GGGATGAAAAGCGTGAGGAG+TGG | 0.666595 | 5.1:-7853056 | MS.gene20308:CDS |
| AGAAGCAGAGTGGATCTGGT+GGG | 0.667841 | 5.1:-7852788 | MS.gene20308:CDS |
| AGCCCAGATTATGAAGAATG+GGG | 0.678392 | 5.1:-7852562 | MS.gene20308:CDS |
| CGACTGGGATGAAAAGCGTG+AGG | 0.682004 | 5.1:-7853061 | MS.gene20308:CDS |
| GAGGCCAGCCATGAACAACA+AGG | 0.700083 | 5.1:+7852698 | None:intergenic |
| TGGCACATCCAGAAGCAGAG+TGG | 0.700260 | 5.1:-7852798 | MS.gene20308:CDS |
| ATGGTCATTAGATTTCATGG+AGG | 0.731958 | 5.1:-7852608 | MS.gene20308:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTAATCATATTTTAATA+GGG | - | chr5.1:7853295-7853314 | MS.gene20308:CDS | 10.0% |
| !!! | TCTTTTAATCATATTTTAAT+AGG | - | chr5.1:7853294-7853313 | MS.gene20308:CDS | 10.0% |
| !!! | TTTTAATCATATTTTAATAG+GGG | - | chr5.1:7853296-7853315 | MS.gene20308:CDS | 10.0% |
| !! | AAGATTCTTCAAAAATAAAG+TGG | - | chr5.1:7852343-7852362 | MS.gene20308:CDS | 20.0% |
| !! | AATCAAGTTATTCGTAAATT+TGG | - | chr5.1:7853154-7853173 | MS.gene20308:CDS | 20.0% |
| !! | ATTAAAAGATTATACCTGAA+GGG | + | chr5.1:7853283-7853302 | None:intergenic | 20.0% |
| ! | GATTAAAAGATTATACCTGA+AGG | + | chr5.1:7853284-7853303 | None:intergenic | 25.0% |
| ! | TGAAGAATCTTAACAACAAA+TGG | + | chr5.1:7852334-7852353 | None:intergenic | 25.0% |
| !! | ATAGAAGAAGATTTGTTTCT+GGG | + | chr5.1:7851963-7851982 | None:intergenic | 25.0% |
| !! | ATTTGTCTTTAAAAGTTGAC+CGG | + | chr5.1:7852742-7852761 | None:intergenic | 25.0% |
| !! | TATAGAAGAAGATTTGTTTC+TGG | + | chr5.1:7851964-7851983 | None:intergenic | 25.0% |
| ATCCTAAGATGTTTGCTTAT+TGG | - | chr5.1:7852417-7852436 | MS.gene20308:CDS | 30.0% | |
| ATGAAGCATAATCATTCTTG+AGG | + | chr5.1:7853235-7853254 | None:intergenic | 30.0% | |
| CATTCTTGAGGATAATCAAA+AGG | + | chr5.1:7853223-7853242 | None:intergenic | 30.0% | |
| CCTGTAAAATGTGTAACAAA+TGG | + | chr5.1:7853046-7853065 | None:intergenic | 30.0% | |
| TCAATGGTCATTAGATTTCA+TGG | - | chr5.1:7852658-7852677 | MS.gene20308:CDS | 30.0% | |
| TCCTAAGATGTTTGCTTATT+GGG | - | chr5.1:7852418-7852437 | MS.gene20308:CDS | 30.0% | |
| TCTTCTATATTTCTCTCTGA+TGG | - | chr5.1:7851975-7851994 | MS.gene20308:intron | 30.0% | |
| TTTAATAGGGGTCCAATTAT+TGG | - | chr5.1:7853308-7853327 | MS.gene20308:CDS | 30.0% | |
| ! | GTTTTGTGCATAAAGATCTT+GGG | - | chr5.1:7853176-7853195 | MS.gene20308:CDS | 30.0% |
| ! | TATTTGAAAGATGCTGGTTA+TGG | - | chr5.1:7853001-7853020 | MS.gene20308:CDS | 30.0% |
| ! | TTCAGCTCTTTTACTTGTTT+GGG | - | chr5.1:7852022-7852041 | MS.gene20308:intron | 30.0% |
| ! | TTTCAGCTCTTTTACTTGTT+TGG | - | chr5.1:7852021-7852040 | MS.gene20308:intron | 30.0% |
| ! | TTTTGTGCATAAAGATCTTG+GGG | - | chr5.1:7853177-7853196 | MS.gene20308:CDS | 30.0% |
| !! | CCATTTGTTACACATTTTAC+AGG | - | chr5.1:7853043-7853062 | MS.gene20308:CDS | 30.0% |
| !!! | GTTGTTTTTGTGAGGTTTTA+AGG | + | chr5.1:7852090-7852109 | None:intergenic | 30.0% |
| AAAGCCCAGATTATGAAGAA+TGG | - | chr5.1:7852705-7852724 | MS.gene20308:CDS | 35.0% | |
| AACAACAAATGGTCACCTAT+TGG | + | chr5.1:7852323-7852342 | None:intergenic | 35.0% | |
| AAGCCCAGATTATGAAGAAT+GGG | - | chr5.1:7852706-7852725 | MS.gene20308:CDS | 35.0% | |
| AAGTTGAGCCTAAGTTAAGA+AGG | - | chr5.1:7852930-7852949 | MS.gene20308:CDS | 35.0% | |
| ACATTGGTCACACCAATAAT+TGG | + | chr5.1:7853323-7853342 | None:intergenic | 35.0% | |
| ATGGTCATTAGATTTCATGG+AGG | - | chr5.1:7852661-7852680 | MS.gene20308:CDS | 35.0% | |
| ATTAGATTTCATGGAGGCTT+GGG | - | chr5.1:7852667-7852686 | MS.gene20308:CDS | 35.0% | |
| ATTCTACGATGATCCTGAAA+TGG | - | chr5.1:7852160-7852179 | MS.gene20308:intron | 35.0% | |
| CATAAAGATCTTGGGGATAA+TGG | - | chr5.1:7853184-7853203 | MS.gene20308:CDS | 35.0% | |
| GCTGACAAGATTTATCTAGA+AGG | - | chr5.1:7852827-7852846 | MS.gene20308:CDS | 35.0% | |
| TACCCCATTCTTCATAATCT+GGG | + | chr5.1:7852712-7852731 | None:intergenic | 35.0% | |
| TCATTATACTTCCCACTACA+AGG | + | chr5.1:7853076-7853095 | None:intergenic | 35.0% | |
| TTACCCCATTCTTCATAATC+TGG | + | chr5.1:7852713-7852732 | None:intergenic | 35.0% | |
| ! | AAAGATGCTGGTTATGGTAA+AGG | - | chr5.1:7853007-7853026 | MS.gene20308:CDS | 35.0% |
| ! | AATATTACTTCGAGGGGTAT+TGG | - | chr5.1:7852852-7852871 | MS.gene20308:CDS | 35.0% |
| ! | TCAGCTCTTTTACTTGTTTG+GGG | - | chr5.1:7852023-7852042 | MS.gene20308:intron | 35.0% |
| ! | TTTTGATCAGGAACTGTCAA+TGG | - | chr5.1:7852642-7852661 | MS.gene20308:CDS | 35.0% |
| !! | AGAAGATTTGTTTCTGGGAA+TGG | + | chr5.1:7851958-7851977 | None:intergenic | 35.0% |
| !! | ATATTACTTCGAGGGGTATT+GGG | - | chr5.1:7852853-7852872 | MS.gene20308:CDS | 35.0% |
| !! | GAAGAGTATTTGAAAGATGC+TGG | - | chr5.1:7852995-7853014 | MS.gene20308:CDS | 35.0% |
| !! | GAAGATTTGTTTCTGGGAAT+GGG | + | chr5.1:7851957-7851976 | None:intergenic | 35.0% |
| !! | GATCATAACCTTGTTGTTCA+TGG | - | chr5.1:7852563-7852582 | MS.gene20308:CDS | 35.0% |
| !! | GGTTTTGTGCATAAAGATCT+TGG | - | chr5.1:7853175-7853194 | MS.gene20308:CDS | 35.0% |
| !!! | GAAACAACGTTGTTTTTGTG+AGG | + | chr5.1:7852098-7852117 | None:intergenic | 35.0% |
| !!! | TTTTGTGAGGTTTTAAGGTG+AGG | + | chr5.1:7852085-7852104 | None:intergenic | 35.0% |
| AAGGCGAATATTACTTCGAG+GGG | - | chr5.1:7852846-7852865 | MS.gene20308:CDS | 40.0% | |
| AGAAGGCGAATATTACTTCG+AGG | - | chr5.1:7852844-7852863 | MS.gene20308:CDS | 40.0% | |
| AGCCCAGATTATGAAGAATG+GGG | - | chr5.1:7852707-7852726 | MS.gene20308:CDS | 40.0% | |
| AGGAAGCTTGAAATCCATGT+CGG | + | chr5.1:7852528-7852547 | None:intergenic | 40.0% | |
| ATCATTGCAGCTTTCACAAC+AGG | + | chr5.1:7852452-7852471 | None:intergenic | 40.0% | |
| CAGGATCATCGTAGAATGTT+TGG | + | chr5.1:7852157-7852176 | None:intergenic | 40.0% | |
| CATTAGATTTCATGGAGGCT+TGG | - | chr5.1:7852666-7852685 | MS.gene20308:CDS | 40.0% | |
| CGCGATCGAGAAAGAAAAAT+GGG | - | chr5.1:7852805-7852824 | MS.gene20308:CDS | 40.0% | |
| CTCACTTGATCCATGAGAAA+CGG | - | chr5.1:7852591-7852610 | MS.gene20308:CDS | 40.0% | |
| CTGGTTATGGTAAAGGAAGT+TGG | - | chr5.1:7853014-7853033 | MS.gene20308:CDS | 40.0% | |
| GAAGGCGAATATTACTTCGA+GGG | - | chr5.1:7852845-7852864 | MS.gene20308:CDS | 40.0% | |
| GAGAAAGTGAGTGAAGCTTA+TGG | - | chr5.1:7852962-7852981 | MS.gene20308:CDS | 40.0% | |
| GCCCAATAAGCAAACATCTT+AGG | + | chr5.1:7852422-7852441 | None:intergenic | 40.0% | |
| GTCATGGTATACTCCATTTC+AGG | + | chr5.1:7852176-7852195 | None:intergenic | 40.0% | |
| TCACCTATTGGATTCTTGCA+CGG | + | chr5.1:7852311-7852330 | None:intergenic | 40.0% | |
| TCATCGTAGAATGTTTGGTC+TGG | + | chr5.1:7852152-7852171 | None:intergenic | 40.0% | |
| TCATTGCAGCTTTCACAACA+GGG | + | chr5.1:7852451-7852470 | None:intergenic | 40.0% | |
| TCGCGATCGAGAAAGAAAAA+TGG | - | chr5.1:7852804-7852823 | MS.gene20308:CDS | 40.0% | |
| TCTTCATAATCTGGGCTTTG+TGG | + | chr5.1:7852704-7852723 | None:intergenic | 40.0% | |
| TGATATGATCATGACCCTTC+AGG | - | chr5.1:7853266-7853285 | MS.gene20308:CDS | 40.0% | |
| TGATCCTTGTAACGTTTGAG+AGG | + | chr5.1:7852548-7852567 | None:intergenic | 40.0% | |
| TGTTGTGAAAGCTGCAATGA+TGG | - | chr5.1:7852451-7852470 | MS.gene20308:CDS | 40.0% | |
| ! | CTTCATAATCTGGGCTTTGT+GGG | + | chr5.1:7852703-7852722 | None:intergenic | 40.0% |
| ! | GTGGATTACTCTCGTATTCA+TGG | - | chr5.1:7852362-7852381 | MS.gene20308:CDS | 40.0% |
| ! | TTCATCCCAGTCGTCTATTT+TGG | + | chr5.1:7852201-7852220 | None:intergenic | 40.0% |
| !! | AGCAAAGGAAAGAGTGTTGA+TGG | - | chr5.1:7852265-7852284 | MS.gene20308:CDS | 40.0% |
| !! | ATAACCTTGTTGTTCATGGC+TGG | - | chr5.1:7852567-7852586 | MS.gene20308:CDS | 40.0% |
| AAAATGCTCCTCCAAGGAAG+AGG | + | chr5.1:7852004-7852023 | None:intergenic | 45.0% | |
| AAGAATGGGGTAAGACTCTC+CGG | - | chr5.1:7852720-7852739 | MS.gene20308:CDS | 45.0% | |
| ACAGGTTGTCAACCTTGTAG+TGG | - | chr5.1:7853061-7853080 | MS.gene20308:CDS | 45.0% | |
| AGATGCATTGTTCACCGACA+TGG | - | chr5.1:7852511-7852530 | MS.gene20308:CDS | 45.0% | |
| ATTGGATTCTTGCACGGAGA+AGG | + | chr5.1:7852305-7852324 | None:intergenic | 45.0% | |
| CAGGTTGTCAACCTTGTAGT+GGG | - | chr5.1:7853062-7853081 | MS.gene20308:CDS | 45.0% | |
| CGTTTCTCATGGATCAAGTG+AGG | + | chr5.1:7852593-7852612 | None:intergenic | 45.0% | |
| GACCACCAAAATAGACGACT+GGG | - | chr5.1:7852193-7852212 | MS.gene20308:CDS | 45.0% | |
| GCATGACGCCTTCTTAACTT+AGG | + | chr5.1:7852941-7852960 | None:intergenic | 45.0% | |
| GCTTCCTCTCAAACGTTACA+AGG | - | chr5.1:7852541-7852560 | MS.gene20308:CDS | 45.0% | |
| TCGTAGAATGTTTGGTCTGG+TGG | + | chr5.1:7852149-7852168 | None:intergenic | 45.0% | |
| TCTCCGTGCAAGAATCCAAT+AGG | - | chr5.1:7852305-7852324 | MS.gene20308:CDS | 45.0% | |
| TGACCACCAAAATAGACGAC+TGG | - | chr5.1:7852192-7852211 | MS.gene20308:intron | 45.0% | |
| TGTACACTGCTGATGCTTGT+TGG | - | chr5.1:7853098-7853117 | MS.gene20308:CDS | 45.0% | |
| TTTCTCGATCGCGATCAGAT+AGG | + | chr5.1:7852798-7852817 | None:intergenic | 45.0% | |
| TTTGCTCCTGCAGAGAAAGA+CGG | + | chr5.1:7852251-7852270 | None:intergenic | 45.0% | |
| ! | ACTGCTGATGCTTGTTGGAA+TGG | - | chr5.1:7853103-7853122 | MS.gene20308:CDS | 45.0% |
| ! | CTGCTGATGCTTGTTGGAAT+GGG | - | chr5.1:7853104-7853123 | MS.gene20308:CDS | 45.0% |
| ! | TTAAGGTGAGGTTGTCGCTT+GGG | + | chr5.1:7852073-7852092 | None:intergenic | 45.0% |
| ! | TTTAAGGTGAGGTTGTCGCT+TGG | + | chr5.1:7852074-7852093 | None:intergenic | 45.0% |
| !! | ACGCTGGTGTGTTTTTGATC+AGG | - | chr5.1:7852630-7852649 | MS.gene20308:CDS | 45.0% |
| !! | ATCCCAGTCGTCTATTTTGG+TGG | + | chr5.1:7852198-7852217 | None:intergenic | 45.0% |
| !! | GAAAGAGTGTTGATGGTCAC+TGG | - | chr5.1:7852272-7852291 | MS.gene20308:CDS | 45.0% |
| !! | GGGTATTGGGAAGAGATAGT+AGG | - | chr5.1:7852866-7852885 | MS.gene20308:CDS | 45.0% |
| !!! | GTCGTCTATTTTGGTGGTCA+TGG | + | chr5.1:7852192-7852211 | None:intergenic | 45.0% |
| AGAAGCAGAGTGGATCTGGT+GGG | - | chr5.1:7852481-7852500 | MS.gene20308:CDS | 50.0% | |
| ATCCAGAAGCAGAGTGGATC+TGG | - | chr5.1:7852477-7852496 | MS.gene20308:CDS | 50.0% | |
| ATGAGAAACGGAGCTGGACT+GGG | - | chr5.1:7852603-7852622 | MS.gene20308:CDS | 50.0% | |
| CATCATCCGTCTTTCTCTGC+AGG | - | chr5.1:7852242-7852261 | MS.gene20308:CDS | 50.0% | |
| GAGCTGAAAATGCTCCTCCA+AGG | + | chr5.1:7852010-7852029 | None:intergenic | 50.0% | |
| GTCTTTCTCTGCAGGAGCAA+AGG | - | chr5.1:7852250-7852269 | MS.gene20308:CDS | 50.0% | |
| TCTGATGGCTTCCTCTTCCT+TGG | - | chr5.1:7851990-7852009 | MS.gene20308:intron | 50.0% | |
| TGATCCATGAGAAACGGAGC+TGG | - | chr5.1:7852597-7852616 | MS.gene20308:CDS | 50.0% | |
| ! | TGGTGGATCAAAGCGCAGAT+CGG | + | chr5.1:7852132-7852151 | None:intergenic | 50.0% |
| CACCAGATCCACTCTGCTTC+TGG | + | chr5.1:7852482-7852501 | None:intergenic | 55.0% | |
| CAGAAGCAGAGTGGATCTGG+TGG | - | chr5.1:7852480-7852499 | MS.gene20308:CDS | 55.0% | |
| CAGTCCAGCTCCGTTTCTCA+TGG | + | chr5.1:7852604-7852623 | None:intergenic | 55.0% | |
| CATGAGAAACGGAGCTGGAC+TGG | - | chr5.1:7852602-7852621 | MS.gene20308:CDS | 55.0% | |
| CCTGTCTGATCGTCTGACTC+GGG | + | chr5.1:7852770-7852789 | None:intergenic | 55.0% | |
| GAGGCCAGCCATGAACAACA+AGG | + | chr5.1:7852574-7852593 | None:intergenic | 55.0% | |
| GATGGCTTCCTCTTCCTTGG+AGG | - | chr5.1:7851993-7852012 | MS.gene20308:intron | 55.0% | |
| GATTTCATGGAGGCTTGGGC+TGG | - | chr5.1:7852671-7852690 | MS.gene20308:CDS | 55.0% | |
| GCCTGTCTGATCGTCTGACT+CGG | + | chr5.1:7852771-7852790 | None:intergenic | 55.0% | |
| GCTTGGGATGGGGTTTGTGA+AGG | + | chr5.1:7852057-7852076 | None:intergenic | 55.0% | |
| GGTGGATCAAAGCGCAGATC+GGG | + | chr5.1:7852131-7852150 | None:intergenic | 55.0% | |
| TGGCACATCCAGAAGCAGAG+TGG | - | chr5.1:7852471-7852490 | MS.gene20308:CDS | 55.0% | |
| ! | AGCTGGACTGGGTTAAACGC+TGG | - | chr5.1:7852614-7852633 | MS.gene20308:CDS | 55.0% |
| ! | ATGGAGGCTTGGGCTGGAAT+GGG | - | chr5.1:7852677-7852696 | MS.gene20308:CDS | 55.0% |
| ! | CGACTGGGATGAAAAGCGTG+AGG | - | chr5.1:7852208-7852227 | MS.gene20308:CDS | 55.0% |
| ! | GGGATGAAAAGCGTGAGGAG+TGG | - | chr5.1:7852213-7852232 | MS.gene20308:CDS | 55.0% |
| ! | GTGAGGTTGTCGCTTGGGAT+GGG | + | chr5.1:7852068-7852087 | None:intergenic | 55.0% |
| ! | TGAGGTTGTCGCTTGGGATG+GGG | + | chr5.1:7852067-7852086 | None:intergenic | 55.0% |
| CCCGAGTCAGACGATCAGAC+AGG | - | chr5.1:7852767-7852786 | MS.gene20308:CDS | 60.0% | |
| ! | CATGGAGGCTTGGGCTGGAA+TGG | - | chr5.1:7852676-7852695 | MS.gene20308:CDS | 60.0% |
| ! | GGTGAGGTTGTCGCTTGGGA+TGG | + | chr5.1:7852069-7852088 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 7851945 | 7853346 | 7851945 | ID=MS.gene20308 |
| chr5.1 | mRNA | 7851945 | 7853346 | 7851945 | ID=MS.gene20308.t1;Parent=MS.gene20308 |
| chr5.1 | exon | 7852193 | 7853346 | 7852193 | ID=MS.gene20308.t1.exon1;Parent=MS.gene20308.t1 |
| chr5.1 | CDS | 7852193 | 7853346 | 7852193 | ID=cds.MS.gene20308.t1;Parent=MS.gene20308.t1 |
| chr5.1 | exon | 7851945 | 7851975 | 7851945 | ID=MS.gene20308.t1.exon2;Parent=MS.gene20308.t1 |
| chr5.1 | CDS | 7851945 | 7851975 | 7851945 | ID=cds.MS.gene20308.t1;Parent=MS.gene20308.t1 |
| Gene Sequence |
| Protein sequence |
