Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20462.t1 | XP_013450947.1 | 95.3 | 279 | 13 | 0 | 1 | 279 | 1 | 279 | 1.10E-157 | 565.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20462.t1 | Q8LGJ5 | 58.9 | 285 | 101 | 5 | 1 | 278 | 1 | 276 | 3.9e-92 | 339.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20462.t1 | A0A072U5P5 | 95.3 | 279 | 13 | 0 | 1 | 279 | 1 | 279 | 7.8e-158 | 565.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058120 | MS.gene20462 | -0.810222 | 1.28E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20462.t1 | MTR_6g011530 | 97.133 | 279 | 8 | 0 | 1 | 279 | 1 | 279 | 0.0 | 565 |
| MS.gene20462.t1 | MTR_7g009710 | 68.551 | 283 | 80 | 3 | 1 | 279 | 1 | 278 | 9.05e-137 | 387 |
| MS.gene20462.t1 | MTR_7g086380 | 48.855 | 262 | 123 | 7 | 20 | 276 | 23 | 278 | 1.18e-77 | 237 |
| MS.gene20462.t1 | MTR_6g027730 | 51.220 | 205 | 95 | 3 | 76 | 279 | 1 | 201 | 1.01e-67 | 209 |
| MS.gene20462.t1 | MTR_2g058330 | 44.656 | 262 | 123 | 7 | 29 | 276 | 16 | 269 | 8.80e-66 | 206 |
| MS.gene20462.t1 | MTR_2g084225 | 41.767 | 249 | 115 | 7 | 41 | 276 | 5 | 236 | 3.25e-62 | 196 |
| MS.gene20462.t1 | MTR_4g080083 | 42.400 | 250 | 113 | 8 | 41 | 276 | 5 | 237 | 5.81e-61 | 193 |
| MS.gene20462.t1 | MTR_2g055320 | 49.763 | 211 | 85 | 6 | 41 | 237 | 19 | 222 | 6.86e-60 | 191 |
| MS.gene20462.t1 | MTR_2g016230 | 39.608 | 255 | 123 | 9 | 38 | 276 | 1 | 240 | 7.03e-57 | 183 |
| MS.gene20462.t1 | MTR_4g080083 | 45.673 | 208 | 91 | 6 | 41 | 238 | 5 | 200 | 9.55e-57 | 181 |
| MS.gene20462.t1 | MTR_5g064550 | 39.370 | 254 | 117 | 5 | 37 | 277 | 2 | 231 | 8.29e-50 | 165 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20462.t1 | AT5G39890 | 58.741 | 286 | 100 | 5 | 1 | 278 | 1 | 276 | 1.28e-116 | 336 |
| MS.gene20462.t1 | AT5G39890 | 60.494 | 243 | 81 | 4 | 1 | 237 | 1 | 234 | 8.04e-101 | 295 |
| MS.gene20462.t1 | AT5G15120 | 59.259 | 243 | 83 | 4 | 41 | 276 | 58 | 291 | 1.19e-99 | 293 |
| MS.gene20462.t1 | AT1G18490 | 43.369 | 279 | 128 | 10 | 20 | 276 | 10 | 280 | 8.12e-64 | 202 |
| MS.gene20462.t1 | AT2G42670 | 42.683 | 246 | 120 | 6 | 41 | 276 | 5 | 239 | 8.85e-63 | 198 |
| MS.gene20462.t1 | AT2G42670 | 43.320 | 247 | 118 | 7 | 41 | 276 | 5 | 240 | 2.94e-62 | 196 |
| MS.gene20462.t1 | AT3G58670 | 41.870 | 246 | 123 | 5 | 41 | 276 | 5 | 240 | 8.46e-61 | 193 |
| MS.gene20462.t1 | AT3G58670 | 41.870 | 246 | 123 | 5 | 41 | 276 | 5 | 240 | 8.46e-61 | 193 |
| MS.gene20462.t1 | AT3G58670 | 41.870 | 246 | 123 | 5 | 41 | 276 | 5 | 240 | 8.46e-61 | 193 |
| MS.gene20462.t1 | AT3G58670 | 44.086 | 186 | 98 | 2 | 91 | 276 | 18 | 197 | 1.00e-51 | 168 |
| MS.gene20462.t1 | AT2G42670 | 46.341 | 164 | 80 | 3 | 114 | 276 | 16 | 172 | 3.96e-44 | 148 |
Find 63 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCTAATATGCCATATTTC+AGG | 0.200898 | 6.3:+6194682 | MS.gene20462:CDS |
| TAAACATTCCTTTCCTCTTC+TGG | 0.218650 | 6.3:-6196638 | None:intergenic |
| TTGAAAATGGTAGGAGATTC+AGG | 0.242628 | 6.3:-6195281 | None:intergenic |
| GCCCTGAAATATGGCATATT+AGG | 0.257004 | 6.3:-6194684 | None:intergenic |
| TGTGCAGTTCTTGATGTTCT+TGG | 0.289175 | 6.3:+6195889 | MS.gene20462:CDS |
| GGATCCAAGTCAACATCTTC+TGG | 0.300517 | 6.3:-6194663 | None:intergenic |
| TCCTCAGGATATAAGATAGA+AGG | 0.318843 | 6.3:-6195829 | None:intergenic |
| ACTTTCTGAGGGTTTGAAAA+TGG | 0.319904 | 6.3:-6195294 | None:intergenic |
| CTGTTAGTAATTGTTTCCTT+TGG | 0.343483 | 6.3:-6192918 | None:intergenic |
| TGCACATCAAATCATATGAT+TGG | 0.370445 | 6.3:+6195243 | MS.gene20462:CDS |
| AAGGAAGTCTTTGCTAATAG+TGG | 0.389136 | 6.3:+6193008 | MS.gene20462:CDS |
| TGCTAACTCTCCACAATAGT+TGG | 0.397487 | 6.3:-6196725 | None:intergenic |
| CCTCCATATTCTGATCTTGA+TGG | 0.415771 | 6.3:+6195913 | MS.gene20462:CDS |
| ATTCCTTTCCTCTTCTGGTA+TGG | 0.419126 | 6.3:-6196633 | None:intergenic |
| GATGCATTTGCCCTGAAATA+TGG | 0.421163 | 6.3:-6194693 | None:intergenic |
| GTCTTTGCTAATAGTGGGAC+AGG | 0.450153 | 6.3:+6193014 | MS.gene20462:CDS |
| CTGCCATCAAGATCAGAATA+TGG | 0.460746 | 6.3:-6195916 | None:intergenic |
| TTATGAGTGTGAGAAATTCT+CGG | 0.469187 | 6.3:+6194749 | MS.gene20462:CDS |
| TTACCTGGAAAGTTGGAAAA+CGG | 0.476609 | 6.3:-6195964 | None:intergenic |
| GCACATCAAATCATATGATT+GGG | 0.481019 | 6.3:+6195244 | MS.gene20462:CDS |
| AGAACCTTAGCTGATAGAAA+AGG | 0.486526 | 6.3:+6192876 | MS.gene20462:CDS |
| GCATCTTCTTCTGACGCCGC+CGG | 0.489872 | 6.3:-6192956 | None:intergenic |
| TTATGAATGGCTACAAGAAA+AGG | 0.495196 | 6.3:+6196658 | MS.gene20462:CDS |
| TCCTAATATGCCATATTTCA+GGG | 0.504171 | 6.3:+6194683 | MS.gene20462:CDS |
| AGGAAAGGAATGTTTATGAA+TGG | 0.504362 | 6.3:+6196645 | MS.gene20462:CDS |
| TGCAAGTTGCCACCATCCTC+AGG | 0.504973 | 6.3:-6195844 | None:intergenic |
| ACAGCAGGTCAAGGAGGAAC+CGG | 0.506872 | 6.3:+6192937 | MS.gene20462:CDS |
| AGGAATTGTCCCACCAGCTC+AGG | 0.513462 | 6.3:+6193034 | MS.gene20462:CDS |
| CTTGAAGATTTAAAAGTGGA+AGG | 0.530635 | 6.3:+6196686 | MS.gene20462:CDS |
| AACTTATCAATGTCCTGAGC+TGG | 0.532617 | 6.3:-6193047 | None:intergenic |
| TAAGTACTACTCACTTTCTG+AGG | 0.535516 | 6.3:-6195306 | None:intergenic |
| TCTATCTTATATCCTGAGGA+TGG | 0.553467 | 6.3:+6195832 | MS.gene20462:CDS |
| ATGTTGCAGGTCCTGAGTTG+AGG | 0.553715 | 6.3:+6195761 | MS.gene20462:intron |
| TCTGAGGGTTTGAAAATGGT+AGG | 0.554115 | 6.3:-6195290 | None:intergenic |
| CCAACTTGAAGATTTAAAAG+TGG | 0.556946 | 6.3:+6196682 | MS.gene20462:CDS |
| AGGAAGTCTTTGCTAATAGT+GGG | 0.558450 | 6.3:+6193009 | MS.gene20462:CDS |
| TTATCAATGTCCTGAGCTGG+TGG | 0.560783 | 6.3:-6193044 | None:intergenic |
| GTACAGTGGTCCAACTATTG+TGG | 0.561786 | 6.3:+6196715 | MS.gene20462:CDS |
| AGGAAACAATTACTAACAGC+AGG | 0.568362 | 6.3:+6192922 | MS.gene20462:CDS |
| CCTCAGGATATAAGATAGAA+GGG | 0.572370 | 6.3:-6195828 | None:intergenic |
| AAAACCAGAAGATGTTGACT+TGG | 0.573524 | 6.3:+6194659 | MS.gene20462:CDS |
| AAGTACTACTCACTTTCTGA+GGG | 0.577095 | 6.3:-6195305 | None:intergenic |
| TATAAGATAGAAGGGTTGCA+AGG | 0.578009 | 6.3:-6195820 | None:intergenic |
| CTCAGGACATTGATAAGTTG+CGG | 0.580370 | 6.3:+6193051 | MS.gene20462:CDS |
| CCCTTCTATCTTATATCCTG+AGG | 0.585726 | 6.3:+6195828 | MS.gene20462:CDS |
| GGGCAAATGCATCTCACAGA+AGG | 0.588667 | 6.3:+6194703 | MS.gene20462:CDS |
| AGGACTATCCATACCAGAAG+AGG | 0.597067 | 6.3:+6196625 | MS.gene20462:CDS |
| TATCCATACCAGAAGAGGAA+AGG | 0.605568 | 6.3:+6196630 | MS.gene20462:CDS |
| CATCAAATCATATGATTGGG+TGG | 0.621774 | 6.3:+6195247 | MS.gene20462:CDS |
| TGTAGAGGAATAACACCAGA+AGG | 0.622496 | 6.3:-6195173 | None:intergenic |
| ATCTTATATCCTGAGGATGG+TGG | 0.627492 | 6.3:+6195835 | MS.gene20462:CDS |
| GTTGAGGTTAGCAAAAGTGA+AGG | 0.633387 | 6.3:+6195777 | MS.gene20462:CDS |
| CAATTACTAACAGCAGGTCA+AGG | 0.634321 | 6.3:+6192928 | MS.gene20462:CDS |
| GCGTCAGAAGAAGATGCCGC+CGG | 0.640523 | 6.3:+6192962 | MS.gene20462:CDS |
| ATTCCAGGGTGATTATGTAG+AGG | 0.643712 | 6.3:-6195188 | None:intergenic |
| TATCAATGTCCTGAGCTGGT+GGG | 0.678123 | 6.3:-6193043 | None:intergenic |
| GCAGGTCAAGGAGGAACCGG+CGG | 0.678543 | 6.3:+6192940 | MS.gene20462:CDS |
| CCATCAAGATCAGAATATGG+AGG | 0.684165 | 6.3:-6195913 | None:intergenic |
| ATTCCTCTACATAATCACCC+TGG | 0.691462 | 6.3:+6195185 | MS.gene20462:CDS |
| AGAGGAATAACACCAGAAGG+TGG | 0.695453 | 6.3:-6195170 | None:intergenic |
| TTACTAACAGCAGGTCAAGG+AGG | 0.728299 | 6.3:+6192931 | MS.gene20462:CDS |
| GTGGAAGGAAGAATGTACAG+TGG | 0.741291 | 6.3:+6196701 | MS.gene20462:CDS |
| AAAATGGTAGGAGATTCAGG+AGG | 0.774453 | 6.3:-6195278 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATCTTAAAATATACAA+AGG | - | chr6.3:6195471-6195490 | None:intergenic | 10.0% |
| !!! | ATTTATTTTCTCAATTATTT+TGG | + | chr6.3:6193273-6193292 | MS.gene20462:intron | 10.0% |
| !!! | TTATTGTTATTAATTGTTTT+CGG | + | chr6.3:6193332-6193351 | MS.gene20462:intron | 10.0% |
| !! | AAAATGATAACATCAAAAAT+TGG | - | chr6.3:6193711-6193730 | None:intergenic | 15.0% |
| !! | TATGATGTTTAATAAGAAAA+TGG | + | chr6.3:6194801-6194820 | MS.gene20462:intron | 15.0% |
| !! | TTTATATATTATATATTCCG+AGG | + | chr6.3:6193870-6193889 | MS.gene20462:intron | 15.0% |
| !!! | ATAGCAATTTTTTCTATTTT+AGG | - | chr6.3:6195431-6195450 | None:intergenic | 15.0% |
| !!! | ATGAACTATAGTTTTAAATT+AGG | - | chr6.3:6195690-6195709 | None:intergenic | 15.0% |
| !!! | ATTGTTTTTATGTTGATAAT+TGG | + | chr6.3:6193124-6193143 | MS.gene20462:intron | 15.0% |
| !!! | TATTGTTATTAATTGTTTTC+GGG | + | chr6.3:6193333-6193352 | MS.gene20462:intron | 15.0% |
| !!! | TGAACTATAGTTTTAAATTA+GGG | - | chr6.3:6195689-6195708 | None:intergenic | 15.0% |
| !! | AAACTAAAATATATATCTCG+TGG | - | chr6.3:6193952-6193971 | None:intergenic | 20.0% |
| !! | AACTAAAATATATATCTCGT+GGG | - | chr6.3:6193951-6193970 | None:intergenic | 20.0% |
| !! | ACACATTAAAAATGTGTATA+AGG | - | chr6.3:6195125-6195144 | None:intergenic | 20.0% |
| !! | AGATATGATTAAAGTTTATG+TGG | - | chr6.3:6196573-6196592 | None:intergenic | 20.0% |
| !! | ATATGATTAAAGTTTATGTG+GGG | - | chr6.3:6196571-6196590 | None:intergenic | 20.0% |
| !! | CAAATGTCAATAAATAACAA+TGG | + | chr6.3:6194237-6194256 | MS.gene20462:intron | 20.0% |
| !! | GATATGATTAAAGTTTATGT+GGG | - | chr6.3:6196572-6196591 | None:intergenic | 20.0% |
| !! | GTATTTAATATGTCTAACTT+AGG | - | chr6.3:6195397-6195416 | None:intergenic | 20.0% |
| !! | TGGATATGAAACATAAAAAA+AGG | - | chr6.3:6194097-6194116 | None:intergenic | 20.0% |
| !!! | ATTGTTATTAATTGTTTTCG+GGG | + | chr6.3:6193334-6193353 | MS.gene20462:intron | 20.0% |
| !!! | ATTTTACCATGAATACTATT+GGG | + | chr6.3:6193726-6193745 | MS.gene20462:intron | 20.0% |
| !!! | ATTTTAGAGAAAATTTTACC+TGG | - | chr6.3:6195982-6196001 | None:intergenic | 20.0% |
| !!! | GATTCAAACTTTAGAAAATT+AGG | + | chr6.3:6196186-6196205 | MS.gene20462:intron | 20.0% |
| !!! | TGACATTTTTGTTTTTTGTA+TGG | + | chr6.3:6194286-6194305 | MS.gene20462:intron | 20.0% |
| ! | ACTAAAATATATATCTCGTG+GGG | - | chr6.3:6193950-6193969 | None:intergenic | 25.0% |
| ! | CATTTATATTCTAATGTTGC+AGG | + | chr6.3:6195748-6195767 | MS.gene20462:intron | 25.0% |
| ! | GATTTACTTTGTGGTTAATT+AGG | + | chr6.3:6194141-6194160 | MS.gene20462:intron | 25.0% |
| ! | GCTATATTAGTTAGTAATGA+AGG | + | chr6.3:6194183-6194202 | MS.gene20462:intron | 25.0% |
| ! | GCTGCAATATTTAATGTTAA+GGG | + | chr6.3:6195625-6195644 | MS.gene20462:intron | 25.0% |
| ! | TATGAAACACCAATTATTAC+TGG | + | chr6.3:6194505-6194524 | MS.gene20462:intron | 25.0% |
| ! | TCAATGATATTTCAGATTGA+AGG | + | chr6.3:6193185-6193204 | MS.gene20462:intron | 25.0% |
| ! | TTAGAAGTCAAATGAATGAA+TGG | - | chr6.3:6194117-6194136 | None:intergenic | 25.0% |
| ! | TTTAATGTTAAGGGAAAGTA+CGG | + | chr6.3:6195634-6195653 | MS.gene20462:intron | 25.0% |
| !! | AATGCTAATTATTTTCAGCT+AGG | - | chr6.3:6195732-6195751 | None:intergenic | 25.0% |
| !! | ATGTGCAAGTATGTAATTTT+CGG | - | chr6.3:6194729-6194748 | None:intergenic | 25.0% |
| !! | ATTTTACGATCAAGATCATA+TGG | + | chr6.3:6196349-6196368 | MS.gene20462:intron | 25.0% |
| !! | CATTTTACCATGAATACTAT+TGG | + | chr6.3:6193725-6193744 | MS.gene20462:intron | 25.0% |
| !! | TAATGAGTTTTTGTATTCCT+AGG | - | chr6.3:6194381-6194400 | None:intergenic | 25.0% |
| !! | TACAAAAAAATCACTAGCTT+AGG | - | chr6.3:6194478-6194497 | None:intergenic | 25.0% |
| !! | TATTTTGTGAACTGTTTGAT+CGG | - | chr6.3:6195015-6195034 | None:intergenic | 25.0% |
| !! | TTTTAATGTGTTGTACAGAT+GGG | + | chr6.3:6195134-6195153 | MS.gene20462:intron | 25.0% |
| !! | TTTTTAATGTGTTGTACAGA+TGG | + | chr6.3:6195133-6195152 | MS.gene20462:intron | 25.0% |
| !!! | AGAAAGGCATAACTATTTTA+AGG | - | chr6.3:6196027-6196046 | None:intergenic | 25.0% |
| !!! | ATTTTTTGTGACAACTCATA+AGG | + | chr6.3:6193598-6193617 | MS.gene20462:intron | 25.0% |
| !!! | GTTTTTAGTAAGCTACTTTT+TGG | + | chr6.3:6195215-6195234 | MS.gene20462:CDS | 25.0% |
| !!! | TTATGTTGATAATTGGCAAT+AGG | + | chr6.3:6193131-6193150 | MS.gene20462:intron | 25.0% |
| AAAGTTCTATGCCTACTAAT+AGG | - | chr6.3:6194217-6194236 | None:intergenic | 30.0% | |
| AAATATACATTGCGTGACTT+TGG | - | chr6.3:6196333-6196352 | None:intergenic | 30.0% | |
| AAATATCGATAGTGACATGT+GGG | - | chr6.3:6196534-6196553 | None:intergenic | 30.0% | |
| AAGCATAGAAGAATATCCTA+TGG | - | chr6.3:6194446-6194465 | None:intergenic | 30.0% | |
| AAGTTCTATGCCTACTAATA+GGG | - | chr6.3:6194216-6194235 | None:intergenic | 30.0% | |
| AATTCATGCAGTCAATACAA+CGG | - | chr6.3:6194962-6194981 | None:intergenic | 30.0% | |
| AGAAGTAACACCTTAGATTT+CGG | + | chr6.3:6196375-6196394 | MS.gene20462:intron | 30.0% | |
| AGCATAGAAGAATATCCTAT+GGG | - | chr6.3:6194445-6194464 | None:intergenic | 30.0% | |
| AGGAAAGGAATGTTTATGAA+TGG | + | chr6.3:6196645-6196664 | MS.gene20462:CDS | 30.0% | |
| AGGTTTAAATCCCTATTAGT+AGG | + | chr6.3:6194203-6194222 | MS.gene20462:intron | 30.0% | |
| ATCCTAATATGCCATATTTC+AGG | + | chr6.3:6194682-6194701 | MS.gene20462:CDS | 30.0% | |
| ATTCATAATATCTCGACTCT+AGG | + | chr6.3:6194979-6194998 | MS.gene20462:intron | 30.0% | |
| ATTGTCCATAAAGACTAAAG+AGG | + | chr6.3:6194325-6194344 | MS.gene20462:intron | 30.0% | |
| CAATCATGAATCTTGACAAT+TGG | - | chr6.3:6196251-6196270 | None:intergenic | 30.0% | |
| CCAACTTGAAGATTTAAAAG+TGG | + | chr6.3:6196682-6196701 | MS.gene20462:CDS | 30.0% | |
| CGCTGCAATATTTAATGTTA+AGG | + | chr6.3:6195624-6195643 | MS.gene20462:intron | 30.0% | |
| CTGTTAGTAATTGTTTCCTT+TGG | - | chr6.3:6192921-6192940 | None:intergenic | 30.0% | |
| CTTGAAGATTTAAAAGTGGA+AGG | + | chr6.3:6196686-6196705 | MS.gene20462:CDS | 30.0% | |
| GCACATCAAATCATATGATT+GGG | + | chr6.3:6195244-6195263 | MS.gene20462:CDS | 30.0% | |
| GTGGTTAATTAGGACTAATT+AGG | + | chr6.3:6194151-6194170 | MS.gene20462:intron | 30.0% | |
| TACTAAAAACTGTCATTCCA+GGG | - | chr6.3:6195205-6195224 | None:intergenic | 30.0% | |
| TATATCTCTTGACATATCCT+CGG | + | chr6.3:6196088-6196107 | MS.gene20462:intron | 30.0% | |
| TCAATCAAGATCAAATGACT+TGG | - | chr6.3:6196459-6196478 | None:intergenic | 30.0% | |
| TCCTAATATGCCATATTTCA+GGG | + | chr6.3:6194683-6194702 | MS.gene20462:CDS | 30.0% | |
| TCTAATGTGGATTTACTTTG+TGG | + | chr6.3:6194132-6194151 | MS.gene20462:intron | 30.0% | |
| TCTCATGAAATTTCAGTTGA+AGG | + | chr6.3:6196605-6196624 | MS.gene20462:intron | 30.0% | |
| TGAAGTGTATTAGTGAAGAA+AGG | - | chr6.3:6196043-6196062 | None:intergenic | 30.0% | |
| TGCACATCAAATCATATGAT+TGG | + | chr6.3:6195243-6195262 | MS.gene20462:CDS | 30.0% | |
| TGGAATTCATTGCAACATAA+CGG | + | chr6.3:6196281-6196300 | MS.gene20462:intron | 30.0% | |
| TTACTAAAAACTGTCATTCC+AGG | - | chr6.3:6195206-6195225 | None:intergenic | 30.0% | |
| TTATGAATGGCTACAAGAAA+AGG | + | chr6.3:6196658-6196677 | MS.gene20462:CDS | 30.0% | |
| TTATGAGTGTGAGAAATTCT+CGG | + | chr6.3:6194749-6194768 | MS.gene20462:CDS | 30.0% | |
| TTCATAATATCTCGACTCTA+GGG | + | chr6.3:6194980-6194999 | MS.gene20462:intron | 30.0% | |
| ! | AGATTTTTGTGAATTGCCAA+AGG | + | chr6.3:6192902-6192921 | MS.gene20462:CDS | 30.0% |
| ! | ATCGATATTTCTATTTGTGC+CGG | + | chr6.3:6196544-6196563 | MS.gene20462:intron | 30.0% |
| ! | CATTCATTTGACTTCTAATG+TGG | + | chr6.3:6194119-6194138 | MS.gene20462:intron | 30.0% |
| ! | GAAAATTTTACCTGGAAAGT+TGG | - | chr6.3:6195974-6195993 | None:intergenic | 30.0% |
| ! | TACTTCCTCTTTAGTCTTTA+TGG | - | chr6.3:6194333-6194352 | None:intergenic | 30.0% |
| ! | TTTTGTATTCCTAGGCTTAT+AGG | - | chr6.3:6194373-6194392 | None:intergenic | 30.0% |
| !! | CCACTTTTAAATCTTCAAGT+TGG | - | chr6.3:6196685-6196704 | None:intergenic | 30.0% |
| AAATCTCGATCCGAAATCTA+AGG | - | chr6.3:6196388-6196407 | None:intergenic | 35.0% | |
| AACTCACCCAATAGTATTCA+TGG | - | chr6.3:6193735-6193754 | None:intergenic | 35.0% | |
| AAGCACACAATGAGACAAAT+CGG | - | chr6.3:6196488-6196507 | None:intergenic | 35.0% | |
| AAGGAAGTCTTTGCTAATAG+TGG | + | chr6.3:6193008-6193027 | MS.gene20462:CDS | 35.0% | |
| AAGTACTACTCACTTTCTGA+GGG | - | chr6.3:6195308-6195327 | None:intergenic | 35.0% | |
| ACACAGACACCAGTAATAAT+TGG | - | chr6.3:6194517-6194536 | None:intergenic | 35.0% | |
| AGAACCTTAGCTGATAGAAA+AGG | + | chr6.3:6192876-6192895 | MS.gene20462:CDS | 35.0% | |
| AGGAAACAATTACTAACAGC+AGG | + | chr6.3:6192922-6192941 | MS.gene20462:CDS | 35.0% | |
| AGGAAGTCTTTGCTAATAGT+GGG | + | chr6.3:6193009-6193028 | MS.gene20462:CDS | 35.0% | |
| AGTTAACGGTTGCAATGTAA+CGG | - | chr6.3:6195552-6195571 | None:intergenic | 35.0% | |
| ATAGCCAAATCAAAGAACCT+CGG | - | chr6.3:6193890-6193909 | None:intergenic | 35.0% | |
| ATATGCGTCAGTATCCTTAT+TGG | + | chr6.3:6193494-6193513 | MS.gene20462:intron | 35.0% | |
| ATTAAAGTTTATGTGGGGTC+CGG | - | chr6.3:6196566-6196585 | None:intergenic | 35.0% | |
| CACTCATCAAACACAAGAAA+CGG | - | chr6.3:6193536-6193555 | None:intergenic | 35.0% | |
| CATCAAATCATATGATTGGG+TGG | + | chr6.3:6195247-6195266 | MS.gene20462:CDS | 35.0% | |
| CCTCAGGATATAAGATAGAA+GGG | - | chr6.3:6195831-6195850 | None:intergenic | 35.0% | |
| CTAGAGTTGTATACTTTGCA+TGG | - | chr6.3:6194616-6194635 | None:intergenic | 35.0% | |
| GAAATATCGATAGTGACATG+TGG | - | chr6.3:6196535-6196554 | None:intergenic | 35.0% | |
| GCATAGAAGAATATCCTATG+GGG | - | chr6.3:6194444-6194463 | None:intergenic | 35.0% | |
| GGTAACAGTTGGATCAATAT+CGG | - | chr6.3:6194941-6194960 | None:intergenic | 35.0% | |
| GTAAGTGGTTCATGGTTTAT+AGG | + | chr6.3:6194546-6194565 | MS.gene20462:intron | 35.0% | |
| GTACTTTCACCTGAAGTTAA+CGG | - | chr6.3:6195566-6195585 | None:intergenic | 35.0% | |
| TAAACATTCCTTTCCTCTTC+TGG | - | chr6.3:6196641-6196660 | None:intergenic | 35.0% | |
| TAAGTACTACTCACTTTCTG+AGG | - | chr6.3:6195309-6195328 | None:intergenic | 35.0% | |
| TATAAGATAGAAGGGTTGCA+AGG | - | chr6.3:6195823-6195842 | None:intergenic | 35.0% | |
| TATTCCGAGGTTCTTTGATT+TGG | + | chr6.3:6193883-6193902 | MS.gene20462:intron | 35.0% | |
| TCCTCAGGATATAAGATAGA+AGG | - | chr6.3:6195832-6195851 | None:intergenic | 35.0% | |
| TCTATCTTATATCCTGAGGA+TGG | + | chr6.3:6195832-6195851 | MS.gene20462:CDS | 35.0% | |
| TTACCTGGAAAGTTGGAAAA+CGG | - | chr6.3:6195967-6195986 | None:intergenic | 35.0% | |
| TTGAAAATGGTAGGAGATTC+AGG | - | chr6.3:6195284-6195303 | None:intergenic | 35.0% | |
| ! | AAAACCAGAAGATGTTGACT+TGG | + | chr6.3:6194659-6194678 | MS.gene20462:CDS | 35.0% |
| ! | AAAATGGATTCCCTTCACTT+CGG | + | chr6.3:6194817-6194836 | MS.gene20462:intron | 35.0% |
| ! | ACTTTCTGAGGGTTTGAAAA+TGG | - | chr6.3:6195297-6195316 | None:intergenic | 35.0% |
| ! | GACTAAAGAGGAAGTAGTTT+TGG | + | chr6.3:6194337-6194356 | MS.gene20462:intron | 35.0% |
| ! | TCTTCCTTTTCTATCAGCTA+AGG | - | chr6.3:6192883-6192902 | None:intergenic | 35.0% |
| ! | TTGCGTGTTTTCTTTTACTG+CGG | - | chr6.3:6196119-6196138 | None:intergenic | 35.0% |
| !! | ATATTTTGTTTGCCACCTTC+TGG | + | chr6.3:6195158-6195177 | MS.gene20462:CDS | 35.0% |
| !!! | GAGACTTTTTGAGACTTGTA+AGG | + | chr6.3:6192989-6193008 | MS.gene20462:CDS | 35.0% |
| !!! | TAAAGAGGAAGTAGTTTTGG+TGG | + | chr6.3:6194340-6194359 | MS.gene20462:intron | 35.0% |
| !!! | TTATTTTGGTGTCTACACGT+CGG | + | chr6.3:6193287-6193306 | MS.gene20462:intron | 35.0% |
| AAAATGGTAGGAGATTCAGG+AGG | - | chr6.3:6195281-6195300 | None:intergenic | 40.0% | |
| AACTTATCAATGTCCTGAGC+TGG | - | chr6.3:6193050-6193069 | None:intergenic | 40.0% | |
| ACAATGTGATGTCAAGTCCA+TGG | + | chr6.3:6193972-6193991 | MS.gene20462:intron | 40.0% | |
| ACACATCACATCTCACACTA+AGG | - | chr6.3:6193805-6193824 | None:intergenic | 40.0% | |
| ACAGTTGGATCAATATCGGA+TGG | - | chr6.3:6194937-6194956 | None:intergenic | 40.0% | |
| ACATTGCAACCGTTAACTTC+AGG | + | chr6.3:6195554-6195573 | MS.gene20462:intron | 40.0% | |
| AGTCAAGTGATCTTGGTTGT+TGG | + | chr6.3:6196145-6196164 | MS.gene20462:intron | 40.0% | |
| ATACTATTGGGTGAGTTGTG+TGG | + | chr6.3:6193738-6193757 | MS.gene20462:intron | 40.0% | |
| ATCGTGTAGTCAAGTGATCT+TGG | + | chr6.3:6196138-6196157 | MS.gene20462:intron | 40.0% | |
| ATCTTATATCCTGAGGATGG+TGG | + | chr6.3:6195835-6195854 | MS.gene20462:CDS | 40.0% | |
| ATTCCAGGGTGATTATGTAG+AGG | - | chr6.3:6195191-6195210 | None:intergenic | 40.0% | |
| ATTCCTCTACATAATCACCC+TGG | + | chr6.3:6195185-6195204 | MS.gene20462:CDS | 40.0% | |
| ATTCCTTTCCTCTTCTGGTA+TGG | - | chr6.3:6196636-6196655 | None:intergenic | 40.0% | |
| CAATTACTAACAGCAGGTCA+AGG | + | chr6.3:6192928-6192947 | MS.gene20462:CDS | 40.0% | |
| CATTCACACAGTCAATGCAT+TGG | + | chr6.3:6194849-6194868 | MS.gene20462:intron | 40.0% | |
| CCATCAAGATCAGAATATGG+AGG | - | chr6.3:6195916-6195935 | None:intergenic | 40.0% | |
| CCCTTCTATCTTATATCCTG+AGG | + | chr6.3:6195828-6195847 | MS.gene20462:CDS | 40.0% | |
| CCTCCATATTCTGATCTTGA+TGG | + | chr6.3:6195913-6195932 | MS.gene20462:CDS | 40.0% | |
| CTCAGGACATTGATAAGTTG+CGG | + | chr6.3:6193051-6193070 | MS.gene20462:CDS | 40.0% | |
| CTGCCATCAAGATCAGAATA+TGG | - | chr6.3:6195919-6195938 | None:intergenic | 40.0% | |
| GAAGAGATATCCGAAGTGAA+GGG | - | chr6.3:6194830-6194849 | None:intergenic | 40.0% | |
| GATGCATTTGCCCTGAAATA+TGG | - | chr6.3:6194696-6194715 | None:intergenic | 40.0% | |
| GCCCTGAAATATGGCATATT+AGG | - | chr6.3:6194687-6194706 | None:intergenic | 40.0% | |
| GTCAATACAACGGTAACAGT+TGG | - | chr6.3:6194952-6194971 | None:intergenic | 40.0% | |
| GTCTCAAAAAGTCTCTGAAC+CGG | - | chr6.3:6192984-6193003 | None:intergenic | 40.0% | |
| GTCTCATTCACATTAGACCA+TGG | - | chr6.3:6193992-6194011 | None:intergenic | 40.0% | |
| GTTGAGGTTAGCAAAAGTGA+AGG | + | chr6.3:6195777-6195796 | MS.gene20462:CDS | 40.0% | |
| TACTATTGGGTGAGTTGTGT+GGG | + | chr6.3:6193739-6193758 | MS.gene20462:intron | 40.0% | |
| TATCCATACCAGAAGAGGAA+AGG | + | chr6.3:6196630-6196649 | MS.gene20462:CDS | 40.0% | |
| TCTGAGGGTTTGAAAATGGT+AGG | - | chr6.3:6195293-6195312 | None:intergenic | 40.0% | |
| TGAAGAGATATCCGAAGTGA+AGG | - | chr6.3:6194831-6194850 | None:intergenic | 40.0% | |
| TGGATCAATATCGGATGGTT+TGG | - | chr6.3:6194932-6194951 | None:intergenic | 40.0% | |
| TGTAGAGGAATAACACCAGA+AGG | - | chr6.3:6195176-6195195 | None:intergenic | 40.0% | |
| TGTCTATGTCAAAACCCCAT+AGG | + | chr6.3:6194427-6194446 | MS.gene20462:intron | 40.0% | |
| TGTGCAGTTCTTGATGTTCT+TGG | + | chr6.3:6195889-6195908 | MS.gene20462:CDS | 40.0% | |
| ! | ACTTTTGCTAACCTCAACTC+AGG | - | chr6.3:6195775-6195794 | None:intergenic | 40.0% |
| ! | GATAAGTTGCGGTCTGTTTT+AGG | + | chr6.3:6193062-6193081 | MS.gene20462:CDS | 40.0% |
| ! | GGTGAAAGTACAGACAAATG+CGG | + | chr6.3:6195575-6195594 | MS.gene20462:intron | 40.0% |
| ! | TAGCTTCTCTTTTGTGCAGA+TGG | + | chr6.3:6194633-6194652 | MS.gene20462:intron | 40.0% |
| ! | TATCCGTTTTCCAACTTTCC+AGG | + | chr6.3:6195961-6195980 | MS.gene20462:CDS | 40.0% |
| !! | CGGTGTCGAGTTAATTTTCA+TGG | + | chr6.3:6193307-6193326 | MS.gene20462:intron | 40.0% |
| !! | TTGCGTGACTTTGGAATTCA+CGG | - | chr6.3:6196324-6196343 | None:intergenic | 40.0% |
| ACAAGAAACGGACACCAAAC+AGG | - | chr6.3:6193524-6193543 | None:intergenic | 45.0% | |
| ACCAAACAGGGACACCAATA+AGG | - | chr6.3:6193511-6193530 | None:intergenic | 45.0% | |
| ACTATTGGGTGAGTTGTGTG+GGG | + | chr6.3:6193740-6193759 | MS.gene20462:intron | 45.0% | |
| AGAGGAATAACACCAGAAGG+TGG | - | chr6.3:6195173-6195192 | None:intergenic | 45.0% | |
| AGGACTATCCATACCAGAAG+AGG | + | chr6.3:6196625-6196644 | MS.gene20462:CDS | 45.0% | |
| AGTATGTGTCCCTGTCATGT+CGG | - | chr6.3:6193431-6193450 | None:intergenic | 45.0% | |
| ATGCGGCTGTAACTTAGTCA+CGG | + | chr6.3:6195592-6195611 | MS.gene20462:intron | 45.0% | |
| CAAAGTACACCGACATGACA+GGG | + | chr6.3:6193419-6193438 | MS.gene20462:intron | 45.0% | |
| CAAGAAACGGACACCAAACA+GGG | - | chr6.3:6193523-6193542 | None:intergenic | 45.0% | |
| GGATCCAAGTCAACATCTTC+TGG | - | chr6.3:6194666-6194685 | None:intergenic | 45.0% | |
| GGCTTAAAGCCTATAAGCCT+AGG | + | chr6.3:6194361-6194380 | MS.gene20462:intron | 45.0% | |
| GTACAGTGGTCCAACTATTG+TGG | + | chr6.3:6196715-6196734 | MS.gene20462:CDS | 45.0% | |
| GTGGAAGGAAGAATGTACAG+TGG | + | chr6.3:6196701-6196720 | MS.gene20462:CDS | 45.0% | |
| TATCAATGTCCTGAGCTGGT+GGG | - | chr6.3:6193046-6193065 | None:intergenic | 45.0% | |
| TCAAAAAGTCTCTGAACCGG+CGG | - | chr6.3:6192981-6193000 | None:intergenic | 45.0% | |
| TCAAAGTACACCGACATGAC+AGG | + | chr6.3:6193418-6193437 | MS.gene20462:intron | 45.0% | |
| TTACTAACAGCAGGTCAAGG+AGG | + | chr6.3:6192931-6192950 | MS.gene20462:CDS | 45.0% | |
| TTATCAATGTCCTGAGCTGG+TGG | - | chr6.3:6193047-6193066 | None:intergenic | 45.0% | |
| TTCATGATTGCGTGACGAGA+TGG | + | chr6.3:6196261-6196280 | MS.gene20462:intron | 45.0% | |
| TTTGTGCCTGTACGCAATCT+AGG | + | chr6.3:6196507-6196526 | MS.gene20462:intron | 45.0% | |
| ! | ACTGTTCGATCTGAAACCAG+CGG | - | chr6.3:6194878-6194897 | None:intergenic | 45.0% |
| ! | AGGGAAAGTACGGACAAATG+TGG | + | chr6.3:6195644-6195663 | MS.gene20462:intron | 45.0% |
| ! | GTCTTTGCTAATAGTGGGAC+AGG | + | chr6.3:6193014-6193033 | MS.gene20462:CDS | 45.0% |
| ! | TCCTTATTGGTGTCCCTGTT+TGG | + | chr6.3:6193507-6193526 | MS.gene20462:intron | 45.0% |
| AACCACCGCAGTTGTAGTTG+CGG | + | chr6.3:6195523-6195542 | MS.gene20462:intron | 50.0% | |
| ATGTTGCAGGTCCTGAGTTG+AGG | + | chr6.3:6195761-6195780 | MS.gene20462:intron | 50.0% | |
| CAACTACAACTGCGGTGGTT+TGG | - | chr6.3:6195523-6195542 | None:intergenic | 50.0% | |
| CTATTGGGTGAGTTGTGTGG+GGG | + | chr6.3:6193741-6193760 | MS.gene20462:intron | 50.0% | |
| GCGTCTGTGTAAGTGGTTCA+TGG | + | chr6.3:6194538-6194557 | MS.gene20462:intron | 50.0% | |
| GGGCAAATGCATCTCACAGA+AGG | + | chr6.3:6194703-6194722 | MS.gene20462:CDS | 50.0% | |
| GGTAACCGCAACTACAACTG+CGG | - | chr6.3:6195531-6195550 | None:intergenic | 50.0% | |
| TATTGGGTGAGTTGTGTGGG+GGG | + | chr6.3:6193742-6193761 | MS.gene20462:intron | 50.0% | |
| ! | CAACTGCGGTGGTTTGGATA+TGG | - | chr6.3:6195517-6195536 | None:intergenic | 50.0% |
| ! | CTTTTACTGCGGAGAATCCG+AGG | - | chr6.3:6196108-6196127 | None:intergenic | 50.0% |
| !! | TGCGGTCTGTTTTAGGTACG+AGG | + | chr6.3:6193069-6193088 | MS.gene20462:intron | 50.0% |
| AACCGCAACTACAACTGCGG+TGG | - | chr6.3:6195528-6195547 | None:intergenic | 55.0% | |
| ACAGCAGGTCAAGGAGGAAC+CGG | + | chr6.3:6192937-6192956 | MS.gene20462:CDS | 55.0% | |
| AGGAATTGTCCCACCAGCTC+AGG | + | chr6.3:6193034-6193053 | MS.gene20462:CDS | 55.0% | |
| CTGTGTCGCGTCTGTGTAAG+TGG | + | chr6.3:6194531-6194550 | MS.gene20462:intron | 55.0% | |
| GTGGGACCTAGATTGCGTAC+AGG | - | chr6.3:6196516-6196535 | None:intergenic | 55.0% | |
| TGCAAGTTGCCACCATCCTC+AGG | - | chr6.3:6195847-6195866 | None:intergenic | 55.0% | |
| GCATCTTCTTCTGACGCCGC+CGG | - | chr6.3:6192959-6192978 | None:intergenic | 60.0% | |
| GCGTCAGAAGAAGATGCCGC+CGG | + | chr6.3:6192962-6192981 | MS.gene20462:CDS | 60.0% | |
| ! | GTCAATGCATTGGCGACCGC+TGG | + | chr6.3:6194859-6194878 | MS.gene20462:intron | 60.0% |
| GCAGGTCAAGGAGGAACCGG+CGG | + | chr6.3:6192940-6192959 | MS.gene20462:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 6192864 | 6196745 | 6192864 | ID=MS.gene20462 |
| chr6.3 | mRNA | 6192864 | 6196745 | 6192864 | ID=MS.gene20462.t1;Parent=MS.gene20462 |
| chr6.3 | exon | 6192864 | 6193083 | 6192864 | ID=MS.gene20462.t1.exon1;Parent=MS.gene20462.t1 |
| chr6.3 | CDS | 6192864 | 6193083 | 6192864 | ID=cds.MS.gene20462.t1;Parent=MS.gene20462.t1 |
| chr6.3 | exon | 6194652 | 6194770 | 6194652 | ID=MS.gene20462.t1.exon2;Parent=MS.gene20462.t1 |
| chr6.3 | CDS | 6194652 | 6194770 | 6194652 | ID=cds.MS.gene20462.t1;Parent=MS.gene20462.t1 |
| chr6.3 | exon | 6195152 | 6195314 | 6195152 | ID=MS.gene20462.t1.exon3;Parent=MS.gene20462.t1 |
| chr6.3 | CDS | 6195152 | 6195314 | 6195152 | ID=cds.MS.gene20462.t1;Parent=MS.gene20462.t1 |
| chr6.3 | exon | 6195770 | 6195982 | 6195770 | ID=MS.gene20462.t1.exon4;Parent=MS.gene20462.t1 |
| chr6.3 | CDS | 6195770 | 6195982 | 6195770 | ID=cds.MS.gene20462.t1;Parent=MS.gene20462.t1 |
| chr6.3 | exon | 6196621 | 6196745 | 6196621 | ID=MS.gene20462.t1.exon5;Parent=MS.gene20462.t1 |
| chr6.3 | CDS | 6196621 | 6196745 | 6196621 | ID=cds.MS.gene20462.t1;Parent=MS.gene20462.t1 |
| Gene Sequence |
| Protein sequence |
