AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene20537

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20537.t1 MTR_6g009520 95.376 519 23 1 1 519 1 518 0.0 942
MS.gene20537.t1 MTR_6g009540 86.847 517 67 1 3 519 1 516 0.0 852
MS.gene20537.t1 MTR_6g009720 73.413 504 114 5 1 491 1 497 0.0 708
MS.gene20537.t1 MTR_6g009553 75.442 452 92 3 25 461 1 448 0.0 686
MS.gene20537.t1 MTR_6g009770 72.152 474 92 5 1 461 1 447 0.0 670
MS.gene20537.t1 MTR_6g042290 67.460 504 135 5 12 514 21 496 0.0 645
MS.gene20537.t1 MTR_7g008040 67.387 463 142 4 5 461 1 460 0.0 642
MS.gene20537.t1 MTR_6g009510 67.327 505 88 6 11 514 20 448 0.0 607
MS.gene20537.t1 MTR_4g107370 57.905 506 195 8 7 497 8 510 0.0 589
MS.gene20537.t1 MTR_6g009660 63.462 520 118 11 3 511 1 459 0.0 581
MS.gene20537.t1 MTR_1g022250 58.996 478 179 5 3 477 1 464 0.0 574
MS.gene20537.t1 MTR_2g030420 57.872 470 181 5 7 472 8 464 0.0 555
MS.gene20537.t1 MTR_1g022245 52.155 464 206 5 7 460 3 460 4.98e-171 493
MS.gene20537.t1 MTR_4g128260 44.470 443 234 6 7 441 3 441 1.40e-127 382
MS.gene20537.t1 MTR_5g020980 38.990 495 260 8 8 490 13 477 1.07e-116 354
MS.gene20537.t1 MTR_2g076970 40.082 489 248 12 12 496 7 454 1.24e-109 335
MS.gene20537.t1 MTR_2g076710 40.426 470 229 12 14 469 14 446 2.66e-109 333
MS.gene20537.t1 MTR_2g061820 37.323 493 282 10 5 492 4 474 2.59e-107 330
MS.gene20537.t1 MTR_2g076920 38.755 498 249 12 12 500 13 463 1.04e-105 325
MS.gene20537.t1 MTR_8g076920 38.285 478 264 9 8 481 23 473 1.26e-105 325
MS.gene20537.t1 MTR_2g076690 39.834 482 236 13 14 482 16 456 2.69e-105 323
MS.gene20537.t1 MTR_2g076840 40.821 463 234 10 12 469 7 434 1.17e-104 330
MS.gene20537.t1 MTR_2g076840 48.592 284 114 6 180 461 450 703 1.26e-82 272
MS.gene20537.t1 MTR_2g076900 38.958 480 258 10 12 485 7 457 1.98e-103 318
MS.gene20537.t1 MTR_2g076990 41.849 411 203 9 65 469 1 381 1.03e-100 311
MS.gene20537.t1 MTR_5g020990 37.449 486 265 12 3 472 19 481 6.32e-95 297
MS.gene20537.t1 MTR_3g103150 44.702 302 138 4 162 462 4 277 2.46e-83 260
MS.gene20537.t1 MTR_3g092060 30.342 468 257 12 8 461 2 414 3.66e-66 222
MS.gene20537.t1 MTR_7g117950 33.251 403 204 11 63 455 59 406 5.41e-65 218
MS.gene20537.t1 MTR_5g021020 38.050 318 150 7 146 462 135 406 6.74e-58 198
MS.gene20537.t1 MTR_8g027200 27.679 448 246 13 40 481 35 410 1.88e-50 179
MS.gene20537.t1 MTR_1g011680 61.481 135 47 3 328 460 2 133 1.71e-42 150
MS.gene20537.t1 MTR_5g021000 52.294 109 48 2 355 462 1 106 9.36e-31 117
MS.gene20537.t1 MTR_5g020720 39.227 181 90 4 268 447 25 186 1.40e-27 109
MS.gene20537.t1 MTR_1g113750 52.381 105 48 2 388 491 16 119 8.20e-22 91.7
MS.gene20537.t1 MTR_5g021010 48.352 91 43 2 372 461 34 121 1.08e-17 79.7
MS.gene20537.t1 MTR_1g083330 32.105 190 96 6 221 401 180 345 1.86e-13 72.8
MS.gene20537.t1 MTR_4g033235 32.105 190 96 6 221 401 181 346 2.25e-13 72.4
MS.gene20537.t1 MTR_6g059690 26.984 315 184 13 188 480 177 467 5.73e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20537.t1 AT5G40010 62.391 460 163 5 5 457 4 460 0.0 590
MS.gene20537.t1 AT3G28580 60.390 462 164 8 5 457 4 455 0.0 549
MS.gene20537.t1 AT3G28510 59.002 461 187 2 6 466 5 463 0.0 533
MS.gene20537.t1 AT3G28580 56.926 462 158 9 5 457 4 433 3.37e-176 505
MS.gene20537.t1 AT3G28540 57.081 459 184 6 6 459 5 455 2.79e-172 496
MS.gene20537.t1 AT3G28540 57.081 459 184 6 6 459 5 455 5.25e-172 496
MS.gene20537.t1 AT3G28610 50.936 481 177 10 10 465 4 450 1.37e-164 475
MS.gene20537.t1 AT3G28600 50.939 479 192 8 1 465 1 450 1.67e-162 470
MS.gene20537.t1 AT5G40000 48.566 488 208 10 3 474 2 462 2.43e-155 452
MS.gene20537.t1 AT3G28520 55.679 449 185 6 17 460 2 441 1.14e-153 447
MS.gene20537.t1 AT3G28600 48.017 479 167 8 1 465 1 411 8.56e-144 421
MS.gene20537.t1 AT3G28570 47.009 468 197 8 10 464 7 436 1.51e-143 421
MS.gene20537.t1 AT3G28570 47.009 468 197 8 10 464 14 443 1.90e-143 421
MS.gene20537.t1 AT5G57480 39.721 501 283 7 7 494 3 497 1.57e-126 380
MS.gene20537.t1 AT4G25835 41.053 475 267 7 7 477 3 468 2.16e-125 376
MS.gene20537.t1 AT4G30250 40.336 476 262 8 3 466 1 466 1.12e-115 352
MS.gene20537.t1 AT4G30250 40.295 474 261 8 5 466 1 464 4.32e-115 350
MS.gene20537.t1 AT3G50930 38.340 506 273 10 20 519 73 545 5.25e-109 337
MS.gene20537.t1 AT3G50940 39.421 449 227 9 28 471 43 451 6.55e-108 330
MS.gene20537.t1 AT2G18193 39.004 482 259 10 13 491 19 468 3.00e-105 324
MS.gene20537.t1 AT5G17740 36.133 512 287 12 6 508 11 491 2.63e-103 320
MS.gene20537.t1 AT4G05380 39.149 470 255 10 4 468 11 454 1.12e-102 317
MS.gene20537.t1 AT5G17760 40.000 445 213 9 68 487 72 487 6.80e-102 316
MS.gene20537.t1 AT5G17730 36.179 492 267 12 5 482 10 468 7.49e-101 312
MS.gene20537.t1 AT2G18190 38.043 460 254 9 8 464 15 446 1.08e-98 307
MS.gene20537.t1 AT1G43910 38.478 473 261 10 4 471 10 457 2.81e-97 303
MS.gene20537.t1 AT5G17750 33.800 429 223 8 8 426 13 390 8.62e-83 263
MS.gene20537.t1 AT2G46620 31.385 462 266 8 5 461 1 416 2.92e-71 236
MS.gene20537.t1 AT5G17760 37.405 262 138 4 68 314 72 322 9.60e-53 182
MS.gene20537.t1 AT3G28560 42.202 218 116 4 6 221 5 214 8.42e-48 167
MS.gene20537.t1 AT3G29800 30.541 370 201 10 143 503 104 426 4.29e-46 167
MS.gene20537.t1 AT4G05340 50.000 96 42 1 317 412 4 93 9.39e-23 93.2
MS.gene20537.t1 AT1G09100 32.632 190 95 6 221 401 180 345 3.83e-14 75.1
MS.gene20537.t1 AT3G05530 32.105 190 96 6 221 401 181 346 1.34e-13 73.2
MS.gene20537.t1 AT5G42270 25.000 320 182 12 192 498 232 506 2.98e-11 66.6

Find 73 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAGTAAGGTAACTCTTTC+TGG 0.086559 6.3:-5314377 MS.gene20537:CDS
AAACGTGGTTATCTACTTTA+TGG 0.185533 6.3:-5314671 MS.gene20537:CDS
TTTGAGCATCCTGCAAGATT+TGG 0.271233 6.3:-5314794 MS.gene20537:CDS
CAAAGTATGAAGATGGGAAT+TGG 0.285135 6.3:-5315409 None:intergenic
ATAATTCATGAAACTTTATA+TGG 0.285949 6.3:+5315245 None:intergenic
CAAATAACCCTAGTAGTAAT+TGG 0.316335 6.3:-5314853 MS.gene20537:CDS
AAAGTATGAAGATGGGAATT+GGG 0.332092 6.3:-5315408 None:intergenic
AGAAAATATCTACGAAGATT+AGG 0.335237 6.3:+5315310 None:intergenic
TAAGGTTGATGAAAAGTTAG+AGG 0.361170 6.3:-5313907 MS.gene20537:CDS
GCTAGGTTTCCAAATCTTGC+AGG 0.369566 6.3:+5314785 None:intergenic
TCCAATTATTGAAAAGTTGT+TGG 0.390561 6.3:-5314147 MS.gene20537:CDS
TGAAACTTTATATGGATGTA+TGG 0.395728 6.3:+5315253 None:intergenic
AAAGAATATTATGCTAAAGT+TGG 0.397678 6.3:-5314704 MS.gene20537:CDS
CCAATTATTGAAAAGTTGTT+GGG 0.400795 6.3:-5314146 MS.gene20537:CDS
AGTTCAATGGAGTCAAAGTT+TGG 0.406209 6.3:-5315063 MS.gene20537:CDS
AGAAGAGAAGAATGAAAGTA+AGG 0.407800 6.3:-5314390 MS.gene20537:CDS
CTTTATGGTCCTCCAGGAAC+TGG 0.407812 6.3:-5314656 MS.gene20537:CDS
CAACACATGTTGAATGTAAG+AGG 0.425064 6.3:+5314925 None:intergenic
CTCTTACATTCAACATGTGT+TGG 0.428090 6.3:-5314924 MS.gene20537:CDS
TGATGAAAAGTTAGAGGAAA+AGG 0.438341 6.3:-5313901 MS.gene20537:CDS
AAAATTTCAAAGTATGAAGA+TGG 0.439080 6.3:-5315416 None:intergenic
AATTTGCACTAAGATATGTT+TGG 0.452532 6.3:+5315182 None:intergenic
ATTCAACATGTGTTGGATGA+AGG 0.454671 6.3:-5314917 MS.gene20537:CDS
GATCTTCTTAAGTTCAAGAA+AGG 0.458025 6.3:-5314728 MS.gene20537:CDS
ATAAAGTTTCATGAATTATC+CGG 0.459020 6.3:-5315241 MS.gene20537:CDS
AGATGGGAATTGGGGAACTA+TGG 0.460698 6.3:-5315399 MS.gene20537:CDS
TCTTGAGTTAACAACAGTTA+AGG 0.462521 6.3:-5314579 MS.gene20537:CDS
ATGCTAAAGTTGGAAAGGCT+TGG 0.473908 6.3:-5314694 MS.gene20537:CDS
AAGTCTTCAGTGATTGACTT+TGG 0.475085 6.3:+5314080 None:intergenic
AACTTGATCCTGCTCTCATA+AGG 0.476557 6.3:-5314274 MS.gene20537:CDS
GAGGAAAAGGTGAAGGAGAA+TGG 0.482194 6.3:-5313888 MS.gene20537:CDS
CTTCCCCTCCTTATGAGAGC+AGG 0.493116 6.3:+5314266 None:intergenic
AAGCTATTATGAGCAAGAAT+AGG 0.495148 6.3:-5314892 MS.gene20537:CDS
GATCACTCAAGAGGAAGAAA+AGG 0.500014 6.3:-5313931 MS.gene20537:CDS
CTCTCGATCTCACCGGGCAA+AGG 0.502496 6.3:-5314481 MS.gene20537:CDS
TATCTACTTTATGGTCCTCC+AGG 0.505261 6.3:-5314662 MS.gene20537:CDS
GACTTTGATTCAATCTCTTG+AGG 0.516280 6.3:-5314042 MS.gene20537:CDS
AAATTCTCAGCAACATCAGC+AGG 0.526229 6.3:+5314107 None:intergenic
GAAATCATAGATGAGTTCAA+TGG 0.530945 6.3:-5315076 MS.gene20537:CDS
GAGAATGGTGTCAAAGAGAA+TGG 0.531190 6.3:-5313873 MS.gene20537:CDS
TCTCATAAGGAGGGGAAGAA+TGG 0.535990 6.3:-5314261 MS.gene20537:CDS
TCAAGAGGAAGAAAAGGTTA+AGG 0.538611 6.3:-5313925 MS.gene20537:CDS
AACCCCACTTGTTCTTAGCA+TGG 0.546103 6.3:-5315110 MS.gene20537:CDS
TAACCCTAGTAGTAATTGGT+GGG 0.547641 6.3:-5314849 MS.gene20537:CDS
AAATATCTACGAAGATTAGG+TGG 0.547924 6.3:+5315313 None:intergenic
GATGGAATTTGGTCAGCTTG+TGG 0.549571 6.3:-5314338 MS.gene20537:CDS
AAATTTCAAAGTATGAAGAT+GGG 0.559357 6.3:-5315415 None:intergenic
ACTTTGTTTGAGACGCTCAC+CGG 0.569148 6.3:+5315222 None:intergenic
AAAGTTAGAGGAAAAGGTGA+AGG 0.570385 6.3:-5313895 MS.gene20537:CDS
AACCCTAGTAGTAATTGGTG+GGG 0.572012 6.3:-5314848 MS.gene20537:CDS
ATATTATGCTAAAGTTGGAA+AGG 0.575311 6.3:-5314699 MS.gene20537:CDS
GATTGTTCTCTCGATCTCAC+CGG 0.575538 6.3:-5314488 MS.gene20537:CDS
ATTGTTCTCTCGATCTCACC+GGG 0.579324 6.3:-5314487 MS.gene20537:CDS
ACAAGAATTGATCACTCAAG+AGG 0.581772 6.3:-5313940 MS.gene20537:CDS
TGATGAGACTGATGAAAAGA+AGG 0.583033 6.3:-5314435 MS.gene20537:CDS
AAGTATGAAGATGGGAATTG+GGG 0.585836 6.3:-5315407 None:intergenic
TTGATCCTGCTCTCATAAGG+AGG 0.589263 6.3:-5314271 MS.gene20537:CDS
TCATCCATGCTAAGAACAAG+TGG 0.593420 6.3:+5315106 None:intergenic
TGATCCTGCTCTCATAAGGA+GGG 0.594215 6.3:-5314270 MS.gene20537:CDS
TCAATGGAGTCAAAGTTTGG+TGG 0.596166 6.3:-5315060 MS.gene20537:CDS
GTTGGAAAGGCTTGGAAACG+TGG 0.601459 6.3:-5314686 MS.gene20537:CDS
AAGATTTGGAAACCTAGCTA+TGG 0.607202 6.3:-5314780 MS.gene20537:CDS
GGATGAGGAAGCAAAGCTCA+AGG 0.616773 6.3:-5313976 MS.gene20537:CDS
GAGAATGGTGTGAAAGAGAA+CGG 0.617159 6.3:-5313858 MS.gene20537:CDS
ACCCTAGTAGTAATTGGTGG+GGG 0.617964 6.3:-5314847 MS.gene20537:CDS
GGGGAACTATGGTCACAACT+AGG 0.620126 6.3:-5315388 MS.gene20537:CDS
ATAACCCTAGTAGTAATTGG+TGG 0.620183 6.3:-5314850 MS.gene20537:CDS
CATCCATGCTAAGAACAAGT+GGG 0.622303 6.3:+5315107 None:intergenic
AATATCTACGAAGATTAGGT+GGG 0.627753 6.3:+5315314 None:intergenic
GATCCTGCTCTCATAAGGAG+GGG 0.632718 6.3:-5314269 MS.gene20537:CDS
GTCACAACTAGGTTCAATCA+CGG 0.654145 6.3:-5315377 MS.gene20537:CDS
ATCCATGCTAAGAACAAGTG+GGG 0.670548 6.3:+5315108 None:intergenic
GGTCAGCTTGTGGATCAGAG+AGG 0.714357 6.3:-5314328 MS.gene20537:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTCATGAAACTTTATA+TGG + chr6.3:5314006-5314025 None:intergenic 15.0%
!! AAAGAATATTATGCTAAAGT+TGG - chr6.3:5314544-5314563 MS.gene20537:CDS 20.0%
!! ATAAAGTTTCATGAATTATC+CGG - chr6.3:5314007-5314026 MS.gene20537:CDS 20.0%
!!! AATTTTCACAACAAATTTTG+TGG - chr6.3:5314948-5314967 MS.gene20537:CDS 20.0%
!!! TGAATTTTATTGATGGAATT+TGG - chr6.3:5314899-5314918 MS.gene20537:CDS 20.0%
! AATTTGCACTAAGATATGTT+TGG + chr6.3:5314069-5314088 None:intergenic 25.0%
! AGAAAATATCTACGAAGATT+AGG + chr6.3:5313941-5313960 None:intergenic 25.0%
! ATATTATGCTAAAGTTGGAA+AGG - chr6.3:5314549-5314568 MS.gene20537:CDS 25.0%
! CCAATTATTGAAAAGTTGTT+GGG - chr6.3:5315102-5315121 MS.gene20537:CDS 25.0%
! TCCAATTATTGAAAAGTTGT+TGG - chr6.3:5315101-5315120 MS.gene20537:CDS 25.0%
! TCTTGAGGAAAAAAAGAAAA+AGG - chr6.3:5315221-5315240 MS.gene20537:CDS 25.0%
! TGAAACTTTATATGGATGTA+TGG + chr6.3:5313998-5314017 None:intergenic 25.0%
!! AGAAAATGATTGTGATTTTG+AGG + chr6.3:5314230-5314249 None:intergenic 25.0%
!!! AAAATCTCTTGTTTCTTTTC+TGG + chr6.3:5314496-5314515 None:intergenic 25.0%
!!! AATCTTTTTTCATCTGAAGT+AGG + chr6.3:5314259-5314278 None:intergenic 25.0%
!!! GGTTTGTTGAATTTTATTGA+TGG - chr6.3:5314892-5314911 MS.gene20537:CDS 25.0%
!!! TCTTTTTCAGCTTTCTTAAT+AGG + chr6.3:5314841-5314860 None:intergenic 25.0%
AAAAAAGAAAAAGGATGAGG+AGG - chr6.3:5315230-5315249 MS.gene20537:CDS 30.0%
AAACGTGGTTATCTACTTTA+TGG - chr6.3:5314577-5314596 MS.gene20537:CDS 30.0%
AAAGAAAAAGATAGAGGATG+AGG - chr6.3:5315257-5315276 MS.gene20537:CDS 30.0%
AAATATCTACGAAGATTAGG+TGG + chr6.3:5313938-5313957 None:intergenic 30.0%
AAGCTATTATGAGCAAGAAT+AGG - chr6.3:5314356-5314375 MS.gene20537:CDS 30.0%
AATATCTACGAAGATTAGGT+GGG + chr6.3:5313937-5313956 None:intergenic 30.0%
AGAAGAGAAGAATGAAAGTA+AGG - chr6.3:5314858-5314877 MS.gene20537:CDS 30.0%
CAAATAACCCTAGTAGTAAT+TGG - chr6.3:5314395-5314414 MS.gene20537:CDS 30.0%
GAAATCATAGATGAGTTCAA+TGG - chr6.3:5314172-5314191 MS.gene20537:CDS 30.0%
GATCTTCTTAAGTTCAAGAA+AGG - chr6.3:5314520-5314539 MS.gene20537:CDS 30.0%
GGAAAAAAAGAAAAAGGATG+AGG - chr6.3:5315227-5315246 MS.gene20537:CDS 30.0%
TCTTGAGTTAACAACAGTTA+AGG - chr6.3:5314669-5314688 MS.gene20537:CDS 30.0%
TGATGAAAAGTTAGAGGAAA+AGG - chr6.3:5315347-5315366 MS.gene20537:CDS 30.0%
TGGGAAAAATTTGTCAAACA+TGG + chr6.3:5313918-5313937 None:intergenic 30.0%
! CCCAACAACTTTTCAATAAT+TGG + chr6.3:5315105-5315124 None:intergenic 30.0%
! TTGTAGCTATCAAGCTTTTA+AGG - chr6.3:5315032-5315051 MS.gene20537:CDS 30.0%
!! AAATGATTGTGATTTTGAGG+TGG + chr6.3:5314227-5314246 None:intergenic 30.0%
!! ATGCTTTTTATGGAAGGTTA+GGG + chr6.3:5314287-5314306 None:intergenic 30.0%
!! TAAGGTTGATGAAAAGTTAG+AGG - chr6.3:5315341-5315360 MS.gene20537:CDS 30.0%
AAAGTTAGAGGAAAAGGTGA+AGG - chr6.3:5315353-5315372 MS.gene20537:CDS 35.0%
AAGATTTGGAAACCTAGCTA+TGG - chr6.3:5314468-5314487 MS.gene20537:CDS 35.0%
ACAAGAATTGATCACTCAAG+AGG - chr6.3:5315308-5315327 MS.gene20537:CDS 35.0%
AGTTCAATGGAGTCAAAGTT+TGG - chr6.3:5314185-5314204 MS.gene20537:CDS 35.0%
ATAACCCTAGTAGTAATTGG+TGG - chr6.3:5314398-5314417 MS.gene20537:CDS 35.0%
ATTCAACATGTGTTGGATGA+AGG - chr6.3:5314331-5314350 MS.gene20537:CDS 35.0%
CAACACATGTTGAATGTAAG+AGG + chr6.3:5314326-5314345 None:intergenic 35.0%
CTCTTACATTCAACATGTGT+TGG - chr6.3:5314324-5314343 MS.gene20537:CDS 35.0%
GAAAGTAAGGTAACTCTTTC+TGG - chr6.3:5314871-5314890 MS.gene20537:CDS 35.0%
GACTTTGATTCAATCTCTTG+AGG - chr6.3:5315206-5315225 MS.gene20537:CDS 35.0%
GGAAGCAAAGAAAAAGATAG+AGG - chr6.3:5315251-5315270 MS.gene20537:CDS 35.0%
TAACCCTAGTAGTAATTGGT+GGG - chr6.3:5314399-5314418 MS.gene20537:CDS 35.0%
TCAAGAGGAAGAAAAGGTTA+AGG - chr6.3:5315323-5315342 MS.gene20537:CDS 35.0%
TGATGAGACTGATGAAAAGA+AGG - chr6.3:5314813-5314832 MS.gene20537:CDS 35.0%
! AAGTCTTCAGTGATTGACTT+TGG + chr6.3:5315171-5315190 None:intergenic 35.0%
! ATTGTAGATTTTCCAGTTCC+TGG + chr6.3:5314607-5314626 None:intergenic 35.0%
!! GATGCTTTTTATGGAAGGTT+AGG + chr6.3:5314288-5314307 None:intergenic 35.0%
!! TGAGTTCACGATGCTTTTTA+TGG + chr6.3:5314297-5314316 None:intergenic 35.0%
!! TTCACGATGCTTTTTATGGA+AGG + chr6.3:5314293-5314312 None:intergenic 35.0%
!!! TTTTTTCTTCTTCCTTTGCC+CGG + chr6.3:5314782-5314801 None:intergenic 35.0%
AAATTCTCAGCAACATCAGC+AGG + chr6.3:5315144-5315163 None:intergenic 40.0%
AACCCTAGTAGTAATTGGTG+GGG - chr6.3:5314400-5314419 MS.gene20537:CDS 40.0%
AACTTGATCCTGCTCTCATA+AGG - chr6.3:5314974-5314993 MS.gene20537:CDS 40.0%
ATCCATGCTAAGAACAAGTG+GGG + chr6.3:5314143-5314162 None:intergenic 40.0%
ATGCTAAAGTTGGAAAGGCT+TGG - chr6.3:5314554-5314573 MS.gene20537:CDS 40.0%
CATCCATGCTAAGAACAAGT+GGG + chr6.3:5314144-5314163 None:intergenic 40.0%
GAGAATGGTGTGAAAGAGAA+CGG - chr6.3:5315390-5315409 MS.gene20537:CDS 40.0%
GATCACTCAAGAGGAAGAAA+AGG - chr6.3:5315317-5315336 MS.gene20537:CDS 40.0%
GTCACAACTAGGTTCAATCA+CGG - chr6.3:5313871-5313890 MS.gene20537:CDS 40.0%
TATCTACTTTATGGTCCTCC+AGG - chr6.3:5314586-5314605 MS.gene20537:CDS 40.0%
TCAATGGAGTCAAAGTTTGG+TGG - chr6.3:5314188-5314207 MS.gene20537:CDS 40.0%
TCATCCATGCTAAGAACAAG+TGG + chr6.3:5314145-5314164 None:intergenic 40.0%
TTTGAGCATCCTGCAAGATT+TGG - chr6.3:5314454-5314473 MS.gene20537:CDS 40.0%
! GAGAATGGTGTCAAAGAGAA+TGG - chr6.3:5315375-5315394 MS.gene20537:CDS 40.0%
!!! TCTTTTCTGGTTCCATAGCT+AGG + chr6.3:5314483-5314502 None:intergenic 40.0%
AACCCCACTTGTTCTTAGCA+TGG - chr6.3:5314138-5314157 MS.gene20537:CDS 45.0%
ACCCCCACCAATTACTACTA+GGG + chr6.3:5314405-5314424 None:intergenic 45.0%
ACCCTAGTAGTAATTGGTGG+GGG - chr6.3:5314401-5314420 MS.gene20537:CDS 45.0%
AGATGGGAATTGGGGAACTA+TGG - chr6.3:5313849-5313868 MS.gene20537:CDS 45.0%
ATTGTTCTCTCGATCTCACC+GGG - chr6.3:5314761-5314780 MS.gene20537:CDS 45.0%
GAGGAAAAGGTGAAGGAGAA+TGG - chr6.3:5315360-5315379 MS.gene20537:CDS 45.0%
GATGGAATTTGGTCAGCTTG+TGG - chr6.3:5314910-5314929 MS.gene20537:CDS 45.0%
GATTGTTCTCTCGATCTCAC+CGG - chr6.3:5314760-5314779 MS.gene20537:CDS 45.0%
GCTAGGTTTCCAAATCTTGC+AGG + chr6.3:5314466-5314485 None:intergenic 45.0%
TACCCCCACCAATTACTACT+AGG + chr6.3:5314406-5314425 None:intergenic 45.0%
TCTCATAAGGAGGGGAAGAA+TGG - chr6.3:5314987-5315006 MS.gene20537:CDS 45.0%
TGATCCTGCTCTCATAAGGA+GGG - chr6.3:5314978-5314997 MS.gene20537:CDS 45.0%
TTGATCCTGCTCTCATAAGG+AGG - chr6.3:5314977-5314996 MS.gene20537:CDS 45.0%
! ACTTTGTTTGAGACGCTCAC+CGG + chr6.3:5314029-5314048 None:intergenic 45.0%
! GGGGGTATAAAAGCACAAAG+TGG - chr6.3:5314419-5314438 MS.gene20537:CDS 45.0%
! GTAGATTTTCCAGTTCCTGG+AGG + chr6.3:5314604-5314623 None:intergenic 45.0%
CTTTATGGTCCTCCAGGAAC+TGG - chr6.3:5314592-5314611 MS.gene20537:CDS 50.0%
GATCCTGCTCTCATAAGGAG+GGG - chr6.3:5314979-5314998 MS.gene20537:CDS 50.0%
GGATGAGGAAGCAAAGCTCA+AGG - chr6.3:5315272-5315291 MS.gene20537:CDS 50.0%
GGGGAACTATGGTCACAACT+AGG - chr6.3:5313860-5313879 MS.gene20537:CDS 50.0%
GTTGGAAAGGCTTGGAAACG+TGG - chr6.3:5314562-5314581 MS.gene20537:CDS 50.0%
CTTCCCCTCCTTATGAGAGC+AGG + chr6.3:5314985-5315004 None:intergenic 55.0%
GGTCAGCTTGTGGATCAGAG+AGG - chr6.3:5314920-5314939 MS.gene20537:CDS 55.0%
CTCTCGATCTCACCGGGCAA+AGG - chr6.3:5314767-5314786 MS.gene20537:CDS 60.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 5313845 5315425 5313845 ID=MS.gene20537
chr6.3 mRNA 5313845 5315425 5313845 ID=MS.gene20537.t1;Parent=MS.gene20537
chr6.3 exon 5313845 5315425 5313845 ID=MS.gene20537.t1.exon1;Parent=MS.gene20537.t1
chr6.3 CDS 5313845 5315425 5313845 ID=cds.MS.gene20537.t1;Parent=MS.gene20537.t1
Gene Sequence

>MS.gene20537

ATGAAGATGGGAATTGGGGAACTATGGTCACAACTAGGTTCAATCACGGCTAGCATAATGTTTGTGTATGCCATGTTTGACAAATTTTTCCCACCTAATCTTCGTAGATATTTTCTAAAATACACAAACAAATTCACAAACTTTATGTATCCATACATCCATATAAAGTTTCATGAATTATCCGGTGAGCGTCTCAAACAAAGTGAAACTTACAAAATCATCCAAACATATCTTAGTGCAAATTCATCACAAAGAGCTACAAGACTTAAAGCTGAAGTTGTGAAAGATAGTCAAACCCCACTTGTTCTTAGCATGGATGACAATGAAGAAATCATAGATGAGTTCAATGGAGTCAAAGTTTGGTGGACTGCTAATTACACCACCTCAAAATCACAATCATTTTCTTACTATCCTACTTCAGATGAAAAAAGATTCTTAACCCTAACCTTCCATAAAAAGCATCGTGAACTCATCACTACCTCTTACATTCAACATGTGTTGGATGAAGGAAAAGCTATTATGAGCAAGAATAGGCAACTAAAGCTTTACACAAATAACCCTAGTAGTAATTGGTGGGGGTATAAAAGCACAAAGTGGAATCACACAACTTTTGAGCATCCTGCAAGATTTGGAAACCTAGCTATGGAACCAGAAAAGAAACAAGAGATTTTAAATGATCTTCTTAAGTTCAAGAAAGGTAAAGAATATTATGCTAAAGTTGGAAAGGCTTGGAAACGTGGTTATCTACTTTATGGTCCTCCAGGAACTGGAAAATCTACAATGATATCTGCTATTGCAAATTTCATGAACTATGATGTGTATGATCTTGAGTTAACAACAGTTAAGGATAACAATGAGTTGAAGAGACTTTTGATTGAGACATCGAGTAAATCGATAATAGTTATCGAAGATATCGATTGTTCTCTCGATCTCACCGGGCAAAGGAAGAAGAAAAAAGAGAAAGATGATGATGAGACTGATGAAAAGAAGGATCCTATTAAGAAAGCTGAAAAAGAAGAGAAGAATGAAAGTAAGGTAACTCTTTCTGGTTTGTTGAATTTTATTGATGGAATTTGGTCAGCTTGTGGATCAGAGAGGATCATAATTTTCACAACAAATTTTGTGGACAAACTTGATCCTGCTCTCATAAGGAGGGGAAGAATGGATAAGCATATTGAAATGTCTTATTGTAGCTATCAAGCTTTTAAGGTTCTTGCAAGAAACTACTTAGATGTTGAGTCTCATGATGATTTGTTTCCAATTATTGAAAAGTTGTTGGGAGAGACTAATATGACACCTGCTGATGTTGCTGAGAATTTGATGCCAAAGTCAATCACTGAAGACTTTGAAACTTGCTTGAAGACTTTGATTCAATCTCTTGAGGAAAAAAAGAAAAAGGATGAGGAGGAAGCAAAGAAAAAGATAGAGGATGAGGAAGCAAAGCTCAAGGCAGAGAAAGAGAAACAAGAATTGATCACTCAAGAGGAAGAAAAGGTTAAGGTTGATGAAAAGTTAGAGGAAAAGGTGAAGGAGAATGGTGTCAAAGAGAATGGTGTGAAAGAGAACGGTGTCATCACTTAA
Protein sequence

>MS.gene20537.t1

MKMGIGELWSQLGSITASIMFVYAMFDKFFPPNLRRYFLKYTNKFTNFMYPYIHIKFHELSGERLKQSETYKIIQTYLSANSSQRATRLKAEVVKDSQTPLVLSMDDNEEIIDEFNGVKVWWTANYTTSKSQSFSYYPTSDEKRFLTLTFHKKHRELITTSYIQHVLDEGKAIMSKNRQLKLYTNNPSSNWWGYKSTKWNHTTFEHPARFGNLAMEPEKKQEILNDLLKFKKGKEYYAKVGKAWKRGYLLYGPPGTGKSTMISAIANFMNYDVYDLELTTVKDNNELKRLLIETSSKSIIVIEDIDCSLDLTGQRKKKKEKDDDETDEKKDPIKKAEKEEKNESKVTLSGLLNFIDGIWSACGSERIIIFTTNFVDKLDPALIRRGRMDKHIEMSYCSYQAFKVLARNYLDVESHDDLFPIIEKLLGETNMTPADVAENLMPKSITEDFETCLKTLIQSLEEKKKKDEEEAKKKIEDEEAKLKAEKEKQELITQEEEKVKVDEKLEEKVKENGVKENGVKENGVIT