AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene20583

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20583.t1 MTR_6g008690 98.155 542 9 1 1 542 1 541 0.0 1088
MS.gene20583.t1 MTR_0294s0020 37.803 537 301 7 12 537 36 550 1.26e-126 382
MS.gene20583.t1 MTR_4g033315 38.333 540 302 7 12 540 36 555 5.74e-126 380
MS.gene20583.t1 MTR_4g033310 38.333 540 302 7 12 540 36 555 5.74e-126 380
MS.gene20583.t1 MTR_4g033325 37.616 537 302 9 12 537 36 550 4.38e-125 378
MS.gene20583.t1 MTR_3g005010 38.078 541 294 9 12 540 35 546 9.42e-125 377
MS.gene20583.t1 MTR_4g033330 37.547 530 297 7 4 519 24 533 4.79e-119 362
MS.gene20583.t1 MTR_8g038880 35.063 559 308 13 12 542 25 556 9.49e-114 349
MS.gene20583.t1 MTR_4g019580 34.901 553 311 10 16 542 45 574 1.16e-113 350
MS.gene20583.t1 MTR_4g033375 38.689 473 271 6 13 480 38 496 1.49e-113 346
MS.gene20583.t1 MTR_4g033395 39.256 484 259 9 12 482 37 498 1.51e-113 346
MS.gene20583.t1 MTR_4g015080 36.232 552 305 8 13 537 40 571 3.53e-111 343
MS.gene20583.t1 MTR_3g014790 36.283 565 304 13 5 541 15 551 9.47e-110 338
MS.gene20583.t1 MTR_7g065080 34.358 553 308 10 12 538 36 559 1.15e-109 339
MS.gene20583.t1 MTR_4g033325 37.637 457 252 9 92 537 18 452 3.66e-109 333
MS.gene20583.t1 MTR_3g069500 35.556 540 293 10 24 538 52 561 5.66e-109 337
MS.gene20583.t1 MTR_4g033325 38.605 430 231 9 119 537 19 426 1.34e-108 331
MS.gene20583.t1 MTR_4g033385 38.155 477 251 11 77 537 5 453 2.79e-108 331
MS.gene20583.t1 MTR_7g067010 35.145 552 311 11 13 537 30 561 3.14e-108 335
MS.gene20583.t1 MTR_3g069420 34.120 551 312 12 16 538 43 570 1.62e-105 328
MS.gene20583.t1 MTR_3g072300 35.326 552 318 10 12 540 29 564 1.68e-105 328
MS.gene20583.t1 MTR_3g069440 35.018 554 309 11 13 538 39 569 1.61e-103 323
MS.gene20583.t1 MTR_4g033310 35.472 530 267 9 12 540 36 491 1.64e-99 310
MS.gene20583.t1 MTR_3g462710 32.194 556 327 9 13 538 30 565 6.47e-98 308
MS.gene20583.t1 MTR_7g065080 34.331 501 274 10 64 538 1 472 2.76e-97 304
MS.gene20583.t1 MTR_7g098040 32.509 566 320 12 6 536 34 572 8.04e-97 306
MS.gene20583.t1 MTR_7g098200 31.492 543 335 8 12 536 34 557 6.49e-95 301
MS.gene20583.t1 MTR_7g098160 33.095 559 326 13 6 536 33 571 1.70e-94 300
MS.gene20583.t1 MTR_7g098230 32.288 542 320 11 23 536 42 564 5.90e-94 298
MS.gene20583.t1 MTR_7g098200 31.646 553 331 10 12 536 34 567 1.89e-93 297
MS.gene20583.t1 MTR_1g075440 31.673 562 331 13 12 542 33 572 8.68e-93 295
MS.gene20583.t1 MTR_1g041835 33.096 562 322 15 12 542 32 570 7.23e-91 290
MS.gene20583.t1 MTR_1g041815 33.452 562 320 15 12 542 32 570 1.19e-90 290
MS.gene20583.t1 MTR_7g098090 32.689 569 320 15 6 536 33 576 1.28e-90 290
MS.gene20583.t1 MTR_3g112460 32.353 544 314 13 23 540 39 554 1.59e-90 289
MS.gene20583.t1 MTR_7g098180 31.383 564 329 11 12 541 36 575 4.94e-90 288
MS.gene20583.t1 MTR_3g112470 31.985 544 316 13 23 540 39 554 1.00e-87 281
MS.gene20583.t1 MTR_1g041875 31.306 559 323 14 12 539 34 562 7.80e-87 280
MS.gene20583.t1 MTR_7g098220 31.387 548 327 11 24 542 3 530 5.25e-85 274
MS.gene20583.t1 MTR_7g098220 31.095 566 340 12 6 542 30 574 7.43e-85 275
MS.gene20583.t1 MTR_7g010820 31.712 555 324 8 15 534 34 568 8.04e-84 272
MS.gene20583.t1 MTR_1g042310 30.088 565 336 14 12 542 31 570 2.31e-82 268
MS.gene20583.t1 MTR_4g098800 31.418 557 319 11 16 536 45 574 4.67e-82 267
MS.gene20583.t1 MTR_7g088825 30.586 546 325 11 24 536 39 563 9.67e-82 267
MS.gene20583.t1 MTR_5g012270 32.967 546 321 12 23 539 45 574 9.94e-82 266
MS.gene20583.t1 MTR_5g038060 30.536 560 321 8 24 541 48 581 1.97e-81 266
MS.gene20583.t1 MTR_4g098800 31.418 557 319 11 16 536 110 639 1.99e-81 267
MS.gene20583.t1 MTR_3g462710 32.444 450 262 8 111 538 27 456 4.62e-81 261
MS.gene20583.t1 MTR_5g012290 32.014 556 313 14 23 539 43 572 1.11e-80 264
MS.gene20583.t1 MTR_4g101380 30.623 578 317 8 12 539 32 575 1.53e-80 263
MS.gene20583.t1 MTR_8g469310 31.720 558 326 11 4 527 25 561 2.10e-80 263
MS.gene20583.t1 MTR_1g042310 30.199 553 327 14 24 542 6 533 2.31e-80 262
MS.gene20583.t1 MTR_5g055000 29.872 549 344 8 24 542 35 572 7.28e-80 261
MS.gene20583.t1 MTR_1g041885 31.238 525 300 14 27 520 2 496 1.04e-79 259
MS.gene20583.t1 MTR_1g042310 30.000 550 326 14 27 542 2 526 7.19e-79 258
MS.gene20583.t1 MTR_7g098200 32.794 433 257 9 119 536 40 453 2.54e-77 252
MS.gene20583.t1 MTR_7g005930 28.571 553 351 12 6 534 34 566 4.42e-77 254
MS.gene20583.t1 MTR_4g107670 30.450 578 337 12 4 541 23 575 1.44e-76 253
MS.gene20583.t1 MTR_5g014150 29.558 565 339 12 6 534 44 585 1.81e-75 250
MS.gene20583.t1 MTR_7g088790 29.725 545 329 11 24 535 46 569 2.32e-75 250
MS.gene20583.t1 MTR_3g112450 30.812 542 322 9 23 537 39 554 3.39e-75 249
MS.gene20583.t1 MTR_5g038380 30.530 547 326 12 16 527 37 564 8.35e-75 248
MS.gene20583.t1 MTR_4g107580 30.287 558 328 11 24 541 41 577 7.95e-74 246
MS.gene20583.t1 MTR_1g116930 29.068 547 336 12 16 534 32 554 1.01e-73 245
MS.gene20583.t1 MTR_4g107510 28.571 546 338 11 24 534 53 581 2.98e-72 241
MS.gene20583.t1 MTR_4g107530 30.700 557 329 15 24 542 50 587 6.08e-72 241
MS.gene20583.t1 MTR_7g088820 30.275 545 326 12 24 535 42 565 1.17e-70 237
MS.gene20583.t1 MTR_8g469470 28.272 573 320 11 23 540 48 584 1.05e-69 234
MS.gene20583.t1 MTR_2g005130 28.857 551 344 11 11 540 44 567 3.95e-69 233
MS.gene20583.t1 MTR_4g114340 29.144 549 343 10 16 539 33 560 5.48e-69 232
MS.gene20583.t1 MTR_8g103233 30.237 549 325 14 24 539 34 557 1.20e-68 231
MS.gene20583.t1 MTR_8g469480 27.568 555 338 9 24 538 55 585 1.66e-68 232
MS.gene20583.t1 MTR_5g038190 28.131 551 335 12 23 535 40 567 3.76e-68 230
MS.gene20583.t1 MTR_7g098150 32.051 468 261 12 6 441 33 475 2.83e-67 226
MS.gene20583.t1 MTR_2g017750 26.445 571 360 10 12 540 39 591 1.12e-66 227
MS.gene20583.t1 MTR_7g013270 27.128 564 356 14 1 534 85 623 2.72e-66 227
MS.gene20583.t1 MTR_7g088820 30.000 520 310 12 49 535 5 503 2.09e-64 219
MS.gene20583.t1 MTR_5g085850 28.445 566 310 13 24 541 47 565 2.22e-64 220
MS.gene20583.t1 MTR_7g111260 29.476 553 357 10 5 542 17 551 1.51e-63 218
MS.gene20583.t1 MTR_2g101650 28.299 576 350 16 5 542 20 570 1.68e-63 218
MS.gene20583.t1 MTR_1g026740 28.029 553 339 13 16 534 26 553 2.61e-63 217
MS.gene20583.t1 MTR_1g085090 28.853 558 354 12 5 542 17 551 3.30e-62 215
MS.gene20583.t1 MTR_0236s0050 29.868 529 313 15 35 538 1 496 6.74e-62 212
MS.gene20583.t1 MTR_8g087780 26.465 529 296 8 22 493 36 528 1.77e-61 213
MS.gene20583.t1 MTR_8g087810 27.206 544 298 11 26 506 35 543 2.81e-61 212
MS.gene20583.t1 MTR_1g026750 28.885 547 342 11 16 534 27 554 3.21e-61 211
MS.gene20583.t1 MTR_3g100980 28.042 567 348 12 8 541 15 554 3.28e-61 211
MS.gene20583.t1 MTR_4g011280 28.292 562 334 16 16 538 41 572 4.72e-61 212
MS.gene20583.t1 MTR_1g009200 27.636 550 346 11 16 534 36 564 6.83e-61 211
MS.gene20583.t1 MTR_2g101590 27.817 568 356 16 5 538 21 568 2.57e-60 211
MS.gene20583.t1 MTR_1g057460 28.839 534 322 15 30 538 67 567 7.16e-60 208
MS.gene20583.t1 MTR_7g088820 31.057 454 266 11 108 535 23 455 1.28e-59 205
MS.gene20583.t1 MTR_2g101610 27.622 572 360 16 1 538 18 569 8.64e-59 206
MS.gene20583.t1 MTR_1g026770 29.558 565 314 15 16 534 24 550 9.78e-59 204
MS.gene20583.t1 MTR_1g057460 29.600 500 294 15 64 538 30 496 1.07e-58 203
MS.gene20583.t1 MTR_4g107610 28.182 550 328 14 24 534 48 569 1.40e-58 205
MS.gene20583.t1 MTR_3g100980 27.257 587 355 14 8 541 15 582 4.86e-57 201
MS.gene20583.t1 MTR_2g101640 26.770 579 355 16 1 538 15 565 3.40e-55 196
MS.gene20583.t1 MTR_7g006540 26.277 548 359 10 24 539 80 614 1.60e-54 195
MS.gene20583.t1 MTR_7g051880 29.688 512 309 12 35 534 53 525 3.22e-54 191
MS.gene20583.t1 MTR_7g064780 26.190 546 351 11 24 536 43 569 1.00e-52 189
MS.gene20583.t1 MTR_4g123537 26.047 549 341 12 23 539 57 572 1.58e-52 189
MS.gene20583.t1 MTR_2g101560 26.631 567 366 14 1 535 18 566 2.17e-51 186
MS.gene20583.t1 MTR_2g093640 25.400 563 360 10 1 536 16 545 1.53e-48 177
MS.gene20583.t1 MTR_4g024930 26.667 555 332 16 12 534 41 552 1.76e-48 177
MS.gene20583.t1 MTR_2g093160 25.187 536 344 11 27 536 41 545 2.22e-48 176
MS.gene20583.t1 MTR_2g093180 25.872 545 343 12 20 536 35 546 3.47e-48 176
MS.gene20583.t1 MTR_7g051830 28.864 537 321 14 13 534 35 525 1.29e-47 174
MS.gene20583.t1 MTR_7g098210 25.878 541 270 15 27 536 2 442 2.11e-47 171
MS.gene20583.t1 MTR_7g052600 27.736 530 336 11 13 534 35 525 8.71e-47 171
MS.gene20583.t1 MTR_7g064800 25.000 556 343 10 24 534 43 569 9.50e-46 169
MS.gene20583.t1 MTR_1g009170 25.564 399 246 9 123 518 9 359 1.11e-34 135
MS.gene20583.t1 MTR_3g065350 37.267 161 93 2 304 464 1 153 9.67e-29 112
MS.gene20583.t1 MTR_4g033390 45.055 91 49 1 452 541 30 120 5.07e-21 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20583.t1 AT5G14940 61.470 558 185 11 1 541 1 545 0.0 651
MS.gene20583.t1 AT3G01350 60.036 553 201 8 5 541 5 553 0.0 613
MS.gene20583.t1 AT1G22540 40.840 524 282 6 24 537 47 552 2.06e-130 392
MS.gene20583.t1 AT1G72140 38.910 532 276 11 24 536 51 552 1.28e-124 377
MS.gene20583.t1 AT1G72120 39.065 535 295 8 12 534 34 549 7.28e-123 372
MS.gene20583.t1 AT1G72125 39.212 533 277 10 24 534 46 553 1.09e-121 369
MS.gene20583.t1 AT1G72130 36.531 542 311 8 2 540 26 537 4.39e-120 364
MS.gene20583.t1 AT3G54450 35.929 565 306 14 5 541 10 546 8.79e-118 359
MS.gene20583.t1 AT1G22550 37.476 531 291 9 24 534 47 556 7.50e-115 352
MS.gene20583.t1 AT3G53960 34.403 561 306 11 12 538 42 574 6.12e-106 330
MS.gene20583.t1 AT2G37900 33.810 559 312 10 12 542 43 571 3.76e-105 327
MS.gene20583.t1 AT1G22570 36.986 511 284 12 24 515 10 501 3.36e-104 323
MS.gene20583.t1 AT1G22570 36.520 523 294 12 12 515 35 538 1.03e-103 323
MS.gene20583.t1 AT5G01180 32.682 563 324 12 12 542 30 569 2.65e-102 320
MS.gene20583.t1 AT5G01180 32.682 563 324 12 12 542 30 569 2.65e-102 320
MS.gene20583.t1 AT5G01180 32.682 563 324 12 12 542 30 569 2.65e-102 320
MS.gene20583.t1 AT2G40460 33.690 561 324 11 6 542 24 560 4.92e-101 317
MS.gene20583.t1 AT3G54140 33.214 557 320 10 13 538 30 565 6.35e-101 316
MS.gene20583.t1 AT3G54140 33.214 557 320 10 13 538 30 565 6.35e-101 316
MS.gene20583.t1 AT1G72130 35.862 435 253 6 108 540 9 419 4.08e-99 306
MS.gene20583.t1 AT1G72130 35.862 435 253 6 108 540 9 419 4.08e-99 306
MS.gene20583.t1 AT2G37900 33.973 521 286 10 50 542 2 492 8.09e-98 305
MS.gene20583.t1 AT2G02040 32.671 554 333 9 12 540 46 584 4.80e-97 306
MS.gene20583.t1 AT1G62200 32.916 559 314 8 12 537 57 587 3.66e-94 299
MS.gene20583.t1 AT2G02020 33.766 539 303 12 12 537 47 544 2.66e-92 293
MS.gene20583.t1 AT1G62200 32.007 578 323 9 12 537 57 616 1.98e-90 290
MS.gene20583.t1 AT1G62200 32.007 578 323 9 12 537 71 630 3.06e-90 290
MS.gene20583.t1 AT5G46040 30.864 567 341 10 4 539 20 566 3.33e-84 273
MS.gene20583.t1 AT1G27040 31.801 544 329 9 14 534 2 526 7.18e-82 265
MS.gene20583.t1 AT1G27040 31.949 554 333 10 4 534 22 554 1.11e-81 266
MS.gene20583.t1 AT1G27040 31.949 554 333 10 4 534 26 558 1.42e-81 265
MS.gene20583.t1 AT2G02020 32.653 539 288 14 12 537 47 523 1.76e-81 264
MS.gene20583.t1 AT5G46050 30.125 561 340 12 12 542 32 570 1.53e-80 263
MS.gene20583.t1 AT1G69850 31.218 583 336 15 4 542 24 585 1.10e-78 258
MS.gene20583.t1 AT1G69870 29.529 552 328 9 23 537 67 594 7.89e-77 254
MS.gene20583.t1 AT4G21680 31.228 570 324 14 13 540 34 577 8.75e-77 253
MS.gene20583.t1 AT1G32450 31.103 553 332 11 15 534 45 581 1.74e-76 253
MS.gene20583.t1 AT2G26690 30.199 553 337 11 13 539 30 559 3.57e-76 251
MS.gene20583.t1 AT2G26690 30.387 543 329 11 23 539 7 526 3.88e-76 250
MS.gene20583.t1 AT1G68570 29.799 547 333 9 24 537 10 538 4.07e-75 248
MS.gene20583.t1 AT1G68570 29.799 547 333 9 24 537 40 568 4.66e-75 249
MS.gene20583.t1 AT2G26690 30.410 536 324 11 30 539 2 514 1.22e-74 246
MS.gene20583.t1 AT5G62730 29.326 549 337 11 16 539 6 528 5.17e-74 244
MS.gene20583.t1 AT5G62730 29.234 561 344 12 4 539 55 587 9.82e-74 245
MS.gene20583.t1 AT5G19640 28.571 567 324 13 13 541 65 588 3.38e-72 242
MS.gene20583.t1 AT1G12110 28.201 578 325 12 13 539 33 571 7.81e-71 238
MS.gene20583.t1 AT5G46050 31.293 441 263 10 120 542 40 458 1.32e-68 229
MS.gene20583.t1 AT1G18880 28.131 551 339 11 24 537 36 566 2.66e-68 231
MS.gene20583.t1 AT3G16180 29.688 576 335 18 7 538 19 568 9.10e-67 227
MS.gene20583.t1 AT1G59740 28.877 561 336 12 18 542 49 582 1.48e-66 226
MS.gene20583.t1 AT3G21670 29.197 548 323 12 24 539 46 560 2.56e-65 223
MS.gene20583.t1 AT1G52190 28.472 576 341 16 4 535 18 566 1.42e-62 216
MS.gene20583.t1 AT1G33440 27.321 560 337 12 11 534 42 567 1.14e-61 213
MS.gene20583.t1 AT1G27080 27.387 555 335 11 23 541 30 552 6.75e-60 208
MS.gene20583.t1 AT3G25260 27.619 525 329 11 19 534 33 515 7.15e-60 206
MS.gene20583.t1 AT5G62680 25.355 564 348 10 24 541 60 596 2.40e-58 205
MS.gene20583.t1 AT1G27080 27.407 540 324 11 38 541 3 510 3.28e-57 200
MS.gene20583.t1 AT5G13400 26.703 558 347 10 24 541 81 616 1.28e-56 200
MS.gene20583.t1 AT1G69860 27.289 546 344 14 23 541 34 553 5.37e-56 197
MS.gene20583.t1 AT3G47960 25.405 555 357 11 24 541 78 612 9.10e-56 198
MS.gene20583.t1 AT3G45720 25.603 539 333 12 34 542 46 546 1.13e-54 193
MS.gene20583.t1 AT5G28470 28.440 545 341 15 24 539 34 558 2.07e-53 190
MS.gene20583.t1 AT3G45660 27.103 535 324 14 30 536 44 540 1.13e-52 188
MS.gene20583.t1 AT3G45660 27.103 535 324 14 30 536 44 540 1.13e-52 188
MS.gene20583.t1 AT3G45660 27.103 535 324 14 30 536 65 561 1.79e-52 188
MS.gene20583.t1 AT5G11570 26.923 546 316 12 1 537 7 478 1.12e-51 184
MS.gene20583.t1 AT3G45650 26.692 532 322 14 34 536 49 541 1.13e-51 185
MS.gene20583.t1 AT3G45680 24.334 563 349 13 16 541 30 552 6.79e-51 183
MS.gene20583.t1 AT5G28470 28.257 545 340 16 24 539 34 556 1.61e-50 182
MS.gene20583.t1 AT3G25280 25.794 535 338 10 16 534 30 521 6.40e-50 180
MS.gene20583.t1 AT3G45700 24.816 544 345 14 16 535 26 529 2.60e-47 173
MS.gene20583.t1 AT3G45650 25.806 558 320 16 34 536 49 567 1.72e-46 172
MS.gene20583.t1 AT3G45710 22.909 550 355 13 16 535 31 541 2.98e-45 168
MS.gene20583.t1 AT3G45690 21.739 529 310 13 34 535 45 496 7.23e-32 129
MS.gene20583.t1 AT2G38100 25.741 540 318 19 35 541 2 491 6.89e-31 126
MS.gene20583.t1 AT2G38100 25.741 540 318 19 35 541 24 513 1.32e-30 125
MS.gene20583.t1 AT2G38100 25.741 540 318 19 35 541 18 507 1.38e-30 125

Find 89 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCCAATGGTGGTATTT+TGG 0.171223 6.3:-4549567 MS.gene20583:CDS
CACCTATTGCTGATGCTTAT+TGG 0.205664 6.3:-4551616 MS.gene20583:CDS
GACACATTTGGTTGGGTAAT+AGG 0.231752 6.3:-4549495 MS.gene20583:CDS
CAAAGGGGTAGCCTCAAATT+TGG 0.254691 6.3:-4551738 MS.gene20583:CDS
TGATTAAGCTATTGCCTATA+TGG 0.259511 6.3:-4548744 MS.gene20583:CDS
ACCTATTGCTGATGCTTATT+GGG 0.269588 6.3:-4551615 MS.gene20583:CDS
TTACCACAGTACATTCTTCT+TGG 0.292712 6.3:-4548352 MS.gene20583:CDS
ACACATTTGGTTGGGTAATA+GGG 0.306033 6.3:-4549494 MS.gene20583:CDS
TAACGGCATTAACAGTATTA+TGG 0.311123 6.3:+4548585 None:intergenic
AACAACCAGAAAATGCTTAT+TGG 0.321275 6.3:+4548373 None:intergenic
CTGATAACACGACAGGAAAA+AGG 0.335435 6.3:-4548532 MS.gene20583:CDS
TCTCTCTATTTAATCTCATT+AGG 0.346870 6.3:-4549702 MS.gene20583:CDS
CGAAAATTGTGAAAGCATTA+AGG 0.349041 6.3:-4548821 MS.gene20583:CDS
ATCCTTCACTTCTCATTTGT+CGG 0.356684 6.3:+4548413 None:intergenic
CCCATTGTTCTCATATTCTT+CGG 0.363879 6.3:+4548274 None:intergenic
GAGAAAAGATGAGGACATTA+TGG 0.364757 6.3:+4551580 None:intergenic
AAGCATTAAGGTCATAAATA+AGG 0.365962 6.3:-4548809 MS.gene20583:CDS
TGCCACCAACAATGGCATTA+TGG 0.367205 6.3:+4551637 None:intergenic
TGTTTGTGCTGGAAGCCTAA+TGG 0.372172 6.3:-4549544 MS.gene20583:CDS
CTCTTTGAAACAGTCATTGC+AGG 0.374811 6.3:-4551779 MS.gene20583:intron
CACTTCCATAATGCCATTGT+TGG 0.382096 6.3:-4551642 MS.gene20583:CDS
CACGTTTGGATAATTACTAT+TGG 0.386424 6.3:-4548126 MS.gene20583:CDS
CAGCAAAGATGGTTAATAGT+TGG 0.392002 6.3:-4551673 MS.gene20583:CDS
GTTTGTGCTGGAAGCCTAAT+GGG 0.410630 6.3:-4549543 MS.gene20583:CDS
TTAATCATAACCTTTACATT+TGG 0.412053 6.3:+4548760 None:intergenic
TGGTATCTTCTTATAATGGC+TGG 0.414363 6.3:-4552469 None:intergenic
AATCCATCTCTACAAGCCTT+TGG 0.428240 6.3:-4549666 MS.gene20583:CDS
TCTTACATCCAAGACACATT+TGG 0.430307 6.3:-4549507 MS.gene20583:CDS
TAGATAAGTTACCAAATTTG+AGG 0.430421 6.3:+4551727 None:intergenic
AGCAAAGATGGTTAATAGTT+GGG 0.441043 6.3:-4551672 MS.gene20583:CDS
CATCCAAGACACATTTGGTT+GGG 0.442138 6.3:-4549502 MS.gene20583:CDS
ATGAGAAGCATTGTCCATAT+AGG 0.448966 6.3:+4548730 None:intergenic
TGATATGGTCGAGGCACGTT+TGG 0.450686 6.3:-4548140 MS.gene20583:CDS
AATTCATGCATTCTCCTCAT+AGG 0.453128 6.3:-4552421 MS.gene20583:intron
ATTACTATTGGCTTCTAGCT+TGG 0.455302 6.3:-4548114 MS.gene20583:CDS
GAAGTATACACAAGTTCAAA+AGG 0.460982 6.3:-4548184 MS.gene20583:CDS
CAATTCATCTGCAGCAAAGA+TGG 0.461506 6.3:-4551684 MS.gene20583:CDS
GCCCAATAAGCATCAGCAAT+AGG 0.462037 6.3:+4551614 None:intergenic
ACATGAATGTTACACCCATT+AGG 0.462461 6.3:+4549529 None:intergenic
TAGAGAGGTTTGCATTCAAA+GGG 0.464940 6.3:-4551754 MS.gene20583:CDS
CCGAAGAATATGAGAACAAT+GGG 0.466258 6.3:-4548274 MS.gene20583:CDS
GCCTTTGGAGCTGATCAACT+TGG 0.472222 6.3:-4549651 MS.gene20583:CDS
GCATGAATTGCTGAGCCTCT+TGG 0.476082 6.3:+4552435 None:intergenic
AAGATGGTTAATAGTTGGGT+TGG 0.477748 6.3:-4551668 MS.gene20583:CDS
GCTCCAAAGGCTTGTAGAGA+TGG 0.488186 6.3:+4549663 None:intergenic
TTCCATAATGCCATTGTTGG+TGG 0.499004 6.3:-4551639 MS.gene20583:CDS
GAAATGAAACGCCTTGCTAT+CGG 0.504880 6.3:-4548436 MS.gene20583:CDS
TTACCCAACCAAATGTGTCT+TGG 0.508468 6.3:+4549499 None:intergenic
ATAGAGAGGTTTGCATTCAA+AGG 0.511614 6.3:-4551755 MS.gene20583:CDS
CTCTTAAACATGTTCGTGAA+AGG 0.511777 6.3:+4549360 None:intergenic
ACATCCAAGACACATTTGGT+TGG 0.514558 6.3:-4549503 MS.gene20583:CDS
AAACACCAAAATACCACCAT+TGG 0.524353 6.3:+4549562 None:intergenic
ACCAAGTTGATCAGCTCCAA+AGG 0.526037 6.3:+4549650 None:intergenic
CGTGTTATCAGCTGAGCAAA+CGG 0.532816 6.3:+4548544 None:intergenic
AACTTATCTAACTGATGTTG+TGG 0.535055 6.3:-4551714 MS.gene20583:CDS
GTGTCTGCTACCAAATGTAA+AGG 0.535911 6.3:-4548770 MS.gene20583:CDS
GTGATGCAAAGGATGGGAAT+CGG 0.543695 6.3:-4548502 MS.gene20583:CDS
TATAAACGTGATGCAAAGGA+TGG 0.549790 6.3:-4548509 MS.gene20583:CDS
CAACAGCACTAGCAAGATCA+TGG 0.549961 6.3:-4549767 MS.gene20583:CDS
TCATTTGTCGGCCGATAGCA+AGG 0.551787 6.3:+4548425 None:intergenic
GGCCGACAAATGAGAAGTGA+AGG 0.560082 6.3:-4548415 MS.gene20583:CDS
TATTTAATCTCATTAGGCCA+AGG 0.562331 6.3:-4549696 MS.gene20583:CDS
TGCTCAGCTGATAACACGAC+AGG 0.566556 6.3:-4548539 MS.gene20583:CDS
GTTCAAAAGGAACTCCAAGT+TGG 0.566715 6.3:-4548171 MS.gene20583:CDS
TTCAAATTTCAAGATACCAC+CGG 0.568640 6.3:-4548635 MS.gene20583:CDS
AAGGTATAAACGTGATGCAA+AGG 0.571082 6.3:-4548513 MS.gene20583:CDS
ACACATAGAGTTTACCTATG+AGG 0.578571 6.3:+4552407 None:intergenic
ATGACAATGAAGCGAAACAT+AGG 0.580256 6.3:-4548658 MS.gene20583:CDS
AAAAGATGAGGACATTATGG+TGG 0.581494 6.3:+4551583 None:intergenic
GAAAGAAGCATCGAAATCGC+AGG 0.584602 6.3:+4549462 None:intergenic
TCCGAAGAATATGAGAACAA+TGG 0.585411 6.3:-4548275 MS.gene20583:CDS
GTATCATCTGTGTTACTACA+AGG 0.585979 6.3:+4549612 None:intergenic
ATTGCACTTTGAAGTGTGGC+CGG 0.594628 6.3:+4548616 None:intergenic
TATCTTCTTATAATGGCTGG+TGG 0.599636 6.3:-4552466 None:intergenic
GCAAAGGATGGGAATCGGAA+TGG 0.602918 6.3:-4548497 MS.gene20583:CDS
CAGTCATTGCAGGTATAGAG+AGG 0.605527 6.3:-4551769 MS.gene20583:CDS
ATATCATCAGAAAACCAACT+TGG 0.615024 6.3:+4548157 None:intergenic
ATAAACGTGATGCAAAGGAT+GGG 0.622044 6.3:-4548508 MS.gene20583:CDS
GAGATGGATTATATCCACCT+TGG 0.625994 6.3:+4549679 None:intergenic
GCAATAGGTGCCACCAACAA+TGG 0.628514 6.3:+4551629 None:intergenic
TTAATCTCATTAGGCCAAGG+TGG 0.638847 6.3:-4549693 MS.gene20583:CDS
TTGGTAGAGTAATTTCACAA+TGG 0.651611 6.3:+4549310 None:intergenic
TGTTATTGCACTTTGAAGTG+TGG 0.659660 6.3:+4548612 None:intergenic
GCACTTTGAAGTGTGGCCGG+TGG 0.661057 6.3:+4548619 None:intergenic
AATCATAGCAATGATTATCG+CGG 0.672752 6.3:-4548467 MS.gene20583:CDS
CATAACATAGAGAAAAGATG+AGG 0.677023 6.3:+4551571 None:intergenic
AGAGAGGTTTGCATTCAAAG+GGG 0.708268 6.3:-4551753 MS.gene20583:CDS
CTGGTGGACAGAAAACCAAG+AGG 0.752478 6.3:-4552450 MS.gene20583:CDS
ATACCAAGAAGAATGTACTG+TGG 0.754580 6.3:+4548349 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAACAAAAAAAAGAAA+TGG + chr6.3:4549530-4549549 None:intergenic 10.0%
!! AGAAAATTACATATAATCAA+TGG + chr6.3:4548302-4548321 None:intergenic 15.0%
!! ATAGAATATCATAAATCAAA+AGG + chr6.3:4548648-4548667 None:intergenic 15.0%
!! CTATACTATAACAAAATTAA+TGG + chr6.3:4549474-4549493 None:intergenic 15.0%
!! TAACTTAAAAAAATAAGAAG+TGG + chr6.3:4550157-4550176 None:intergenic 15.0%
!! TAGAATATCATAAATCAAAA+GGG + chr6.3:4548647-4548666 None:intergenic 15.0%
!! TGATATTTCATACAAATATT+TGG - chr6.3:4549153-4549172 MS.gene20583:intron 15.0%
!!! TGAAATTTTTATAATCATAG+AGG + chr6.3:4550105-4550124 None:intergenic 15.0%
!!! TTTTTTAATCAAAATTTAGG+TGG + chr6.3:4549829-4549848 None:intergenic 15.0%
!! AAAAAGAAATGGAATAATCT+TGG + chr6.3:4549519-4549538 None:intergenic 20.0%
!! AACAGTATAGTTAATAGATA+AGG - chr6.3:4550071-4550090 MS.gene20583:intron 20.0%
!! AATACTATAGTATTAGCATT+AGG - chr6.3:4549444-4549463 MS.gene20583:CDS 20.0%
!! CGTAGACAATAATAATAAAT+TGG + chr6.3:4549898-4549917 None:intergenic 20.0%
!! TACTATATAGTATTAGCATT+AGG - chr6.3:4549643-4549662 MS.gene20583:CDS 20.0%
!! TAGTATTTGTATAAAGTAGT+AGG + chr6.3:4549431-4549450 None:intergenic 20.0%
!! TATTGTTTGAATTATGACTA+TGG + chr6.3:4548606-4548625 None:intergenic 20.0%
!! TGTAAATATGTAAATGCAAA+AGG + chr6.3:4548982-4549001 None:intergenic 20.0%
!! TTAATCATAACCTTTACATT+TGG + chr6.3:4551736-4551755 None:intergenic 20.0%
!!! AAATTGTTCATTGATTGATA+AGG + chr6.3:4549766-4549785 None:intergenic 20.0%
!!! AATTGTTCATTGATTGATAA+GGG + chr6.3:4549765-4549784 None:intergenic 20.0%
!!! ATTTATTTTTCTTGTGATAC+AGG - chr6.3:4551626-4551645 MS.gene20583:CDS 20.0%
!!! CAACTTAAATTCTAAAATTC+AGG - chr6.3:4550342-4550361 MS.gene20583:intron 20.0%
!!! TATTATATCCTTTTAGCATA+TGG + chr6.3:4550192-4550211 None:intergenic 20.0%
!!! TGAAATTATGTGATTTTGTA+TGG + chr6.3:4550462-4550481 None:intergenic 20.0%
!!! TTAATAGGATTTATTTTCCA+CGG - chr6.3:4548347-4548366 MS.gene20583:CDS 20.0%
! AAGCATTAAGGTCATAAATA+AGG - chr6.3:4551684-4551703 MS.gene20583:CDS 25.0%
! AATATGTAAATGCAAAAGGA+AGG + chr6.3:4548978-4548997 None:intergenic 25.0%
! AATTAGGTTAAACAATATGG+CGG + chr6.3:4551417-4551436 None:intergenic 25.0%
! ACAATCAAGTAATCAACTAT+AGG + chr6.3:4549218-4549237 None:intergenic 25.0%
! ACATATAATCAATGGAATTG+AGG + chr6.3:4548294-4548313 None:intergenic 25.0%
! ATAAAAACTCTGTCGTATAA+CGG + chr6.3:4551928-4551947 None:intergenic 25.0%
! ATATATTCACCAAAACAAAC+AGG - chr6.3:4550296-4550315 MS.gene20583:intron 25.0%
! ATGTGTATGTTGTATCAATT+TGG + chr6.3:4549983-4550002 None:intergenic 25.0%
! CAGAATTAGGTTAAACAATA+TGG + chr6.3:4551420-4551439 None:intergenic 25.0%
! CATATATGCTTAAATATGAG+TGG + chr6.3:4549704-4549723 None:intergenic 25.0%
! CTATAGTTAAATTCAACTAC+AGG + chr6.3:4548474-4548493 None:intergenic 25.0%
! CTGTAGTTGAATTTAACTAT+AGG - chr6.3:4548472-4548491 MS.gene20583:CDS 25.0%
! GATAAGGTTAAAACAACTTA+TGG - chr6.3:4550520-4550539 MS.gene20583:intron 25.0%
! GTTAGAGAAAATATCACAAA+TGG + chr6.3:4548248-4548267 None:intergenic 25.0%
! GTTGAATTAAAGCATATGTT+TGG - chr6.3:4548212-4548231 MS.gene20583:CDS 25.0%
! TAGATAAGTTACCAAATTTG+AGG + chr6.3:4548769-4548788 None:intergenic 25.0%
! TCTCTCTATTTAATCTCATT+AGG - chr6.3:4550791-4550810 MS.gene20583:intron 25.0%
! TGGTTTCATGTCTATATAAT+TGG + chr6.3:4550255-4550274 None:intergenic 25.0%
!! GAAGTATATAATTTTGTGGA+AGG + chr6.3:4548956-4548975 None:intergenic 25.0%
!! TATATCAGATATTTTCACAG+TGG - chr6.3:4552164-4552183 MS.gene20583:intron 25.0%
!! TGTTTAACCTAATTCTGAAA+AGG - chr6.3:4551423-4551442 MS.gene20583:intron 25.0%
!! TTCAAGTTTCAACCTTATTA+GGG - chr6.3:4548157-4548176 MS.gene20583:CDS 25.0%
!!! CTATTGATTTAAGTTGTTGA+AGG + chr6.3:4550386-4550405 None:intergenic 25.0%
!!! GAAGGAAGTATATAATTTTG+TGG + chr6.3:4548960-4548979 None:intergenic 25.0%
!!! GGTATGCAAGAATTTTTTTA+CGG - chr6.3:4552189-4552208 MS.gene20583:intron 25.0%
!!! TCTTCTAGAGTTTTAAATCA+TGG + chr6.3:4548580-4548599 None:intergenic 25.0%
!!! TTTCAAGTTTCAACCTTATT+AGG - chr6.3:4548156-4548175 MS.gene20583:CDS 25.0%
!!! TTTTTGAGAATGCATAGAAA+CGG + chr6.3:4550558-4550577 None:intergenic 25.0%
AACAACCAGAAAATGCTTAT+TGG + chr6.3:4552123-4552142 None:intergenic 30.0%
AACTTATCTAACTGATGTTG+TGG - chr6.3:4548779-4548798 MS.gene20583:CDS 30.0%
AATCTCCTTTGCAACATTAT+GGG - chr6.3:4548374-4548393 MS.gene20583:CDS 30.0%
AATTCAAATCCATTCAACTG+CGG + chr6.3:4548424-4548443 None:intergenic 30.0%
ACACATATGAGATGAGAAAT+CGG - chr6.3:4551454-4551473 MS.gene20583:intron 30.0%
AGATTGATGCAAGTTCAATA+GGG + chr6.3:4548508-4548527 None:intergenic 30.0%
AGCAAAATTCATCCCTAATA+AGG + chr6.3:4548172-4548191 None:intergenic 30.0%
AGCAAAGATGGTTAATAGTT+GGG - chr6.3:4548821-4548840 MS.gene20583:CDS 30.0%
ATATCATCAGAAAACCAACT+TGG + chr6.3:4552339-4552358 None:intergenic 30.0%
ATTAAGCACCATATGCTAAA+AGG - chr6.3:4550181-4550200 MS.gene20583:intron 30.0%
ATTCTCTTACCAAAAAACAC+AGG + chr6.3:4551535-4551554 None:intergenic 30.0%
CACGTTTGGATAATTACTAT+TGG - chr6.3:4552367-4552386 MS.gene20583:intron 30.0%
CAGTAACTTTCTGTTTGAAT+TGG + chr6.3:4550621-4550640 None:intergenic 30.0%
CATAACATAGAGAAAAGATG+AGG + chr6.3:4548925-4548944 None:intergenic 30.0%
GAAGTATACACAAGTTCAAA+AGG - chr6.3:4552309-4552328 MS.gene20583:intron 30.0%
GATTTGAACTCAGTCATTTA+AGG - chr6.3:4549102-4549121 MS.gene20583:intron 30.0%
GTAAGAGAATGTGTGAAAAA+TGG - chr6.3:4551545-4551564 MS.gene20583:intron 30.0%
GTTTCTATGCATTCTCAAAA+AGG - chr6.3:4550557-4550576 MS.gene20583:intron 30.0%
TAACGGCATTAACAGTATTA+TGG + chr6.3:4551911-4551930 None:intergenic 30.0%
TAATCTCCTTTGCAACATTA+TGG - chr6.3:4548373-4548392 MS.gene20583:CDS 30.0%
TAATGTTGCAAAGGAGATTA+CGG + chr6.3:4548373-4548392 None:intergenic 30.0%
TATCATAAGCTAATCCTTGA+GGG - chr6.3:4550489-4550508 MS.gene20583:intron 30.0%
TATGCAATGAATAATACACG+TGG - chr6.3:4549389-4549408 MS.gene20583:CDS 30.0%
TATTTAATCTCATTAGGCCA+AGG - chr6.3:4550797-4550816 MS.gene20583:intron 30.0%
TGATTAAGCTATTGCCTATA+TGG - chr6.3:4551749-4551768 MS.gene20583:CDS 30.0%
TGTATGAAATATCAGTTCAG+TGG + chr6.3:4549147-4549166 None:intergenic 30.0%
TTATCATAAGCTAATCCTTG+AGG - chr6.3:4550488-4550507 MS.gene20583:intron 30.0%
TTCAAATTTCAAGATACCAC+CGG - chr6.3:4551858-4551877 MS.gene20583:intron 30.0%
TTGGTAGAGTAATTTCACAA+TGG + chr6.3:4551186-4551205 None:intergenic 30.0%
TTTGTATAAAGTAGTAGGTC+AGG + chr6.3:4549426-4549445 None:intergenic 30.0%
! AATTTTCTGCTGAAAAACCT+AGG - chr6.3:4548314-4548333 MS.gene20583:CDS 30.0%
! ACATTTTCAGACTTGTCATT+TGG + chr6.3:4551205-4551224 None:intergenic 30.0%
! ACTGGGAATTTTCCTATTTT+GGG + chr6.3:4550415-4550434 None:intergenic 30.0%
! ATCTTGTCCTTTTCAGAATT+AGG + chr6.3:4551433-4551452 None:intergenic 30.0%
! CTCATCTTTTCTCTATGTTA+TGG - chr6.3:4548923-4548942 MS.gene20583:intron 30.0%
! GCAACATTTTTCACAAAACA+AGG - chr6.3:4551811-4551830 MS.gene20583:intron 30.0%
! GCATTGTATACAAGTGTTTT+CGG - chr6.3:4552246-4552265 MS.gene20583:intron 30.0%
! TACTGGGAATTTTCCTATTT+TGG + chr6.3:4550416-4550435 None:intergenic 30.0%
! TAGTACCAATAAGCATTTTC+TGG - chr6.3:4552115-4552134 MS.gene20583:intron 30.0%
! TCTATCTTGATTTTCTCTAG+TGG - chr6.3:4551052-4551071 MS.gene20583:intron 30.0%
! TCTTGTGTTTTCTTCCTATA+GGG - chr6.3:4550686-4550705 MS.gene20583:intron 30.0%
! TGTTTTGTGAAAAATGTTGC+AGG + chr6.3:4551811-4551830 None:intergenic 30.0%
! TTCTTGTGTTTTCTTCCTAT+AGG - chr6.3:4550685-4550704 MS.gene20583:intron 30.0%
!! AGTTGTGATTTTGACAACAA+TGG + chr6.3:4550327-4550346 None:intergenic 30.0%
!! ATGGTTTTACCTGTTTGTTT+TGG + chr6.3:4550308-4550327 None:intergenic 30.0%
!! CGAAAATTGTGAAAGCATTA+AGG - chr6.3:4551672-4551691 MS.gene20583:CDS 30.0%
!! CTAGGAAACTAGTCTTTAAT+AGG - chr6.3:4548332-4548351 MS.gene20583:CDS 30.0%
!! CTATTAAAGACTAGTTTCCT+AGG + chr6.3:4548334-4548353 None:intergenic 30.0%
!! GATTTTGATGCGATTTTACT+GGG + chr6.3:4550432-4550451 None:intergenic 30.0%
!!! AAAAAGCACTTTTCTTCCAA+TGG - chr6.3:4550915-4550934 MS.gene20583:intron 30.0%
!!! AAGTTGGTTTTCTGATGATA+TGG - chr6.3:4552338-4552357 MS.gene20583:intron 30.0%
AAAAATGTGCGAGAGAATAG+AGG - chr6.3:4551297-4551316 MS.gene20583:intron 35.0%
AAAAGATGAGGACATTATGG+TGG + chr6.3:4548913-4548932 None:intergenic 35.0%
AAACACCAAAATACCACCAT+TGG + chr6.3:4550934-4550953 None:intergenic 35.0%
AAGATGGTTAATAGTTGGGT+TGG - chr6.3:4548825-4548844 MS.gene20583:CDS 35.0%
AAGGTATAAACGTGATGCAA+AGG - chr6.3:4551980-4551999 MS.gene20583:intron 35.0%
AATGGAATTGAGGCTTAAGA+AGG + chr6.3:4548284-4548303 None:intergenic 35.0%
AATTCATGCATTCTCCTCAT+AGG - chr6.3:4548072-4548091 MS.gene20583:CDS 35.0%
ACACATAGAGTTTACCTATG+AGG + chr6.3:4548089-4548108 None:intergenic 35.0%
ACACATTTGGTTGGGTAATA+GGG - chr6.3:4550999-4551018 MS.gene20583:intron 35.0%
ACATGAATGTTACACCCATT+AGG + chr6.3:4550967-4550986 None:intergenic 35.0%
ACCTATTGCTGATGCTTATT+GGG - chr6.3:4548878-4548897 MS.gene20583:intron 35.0%
AGATCATGACATCAGAATCA+TGG + chr6.3:4550275-4550294 None:intergenic 35.0%
ATAAACGTGATGCAAAGGAT+GGG - chr6.3:4551985-4552004 MS.gene20583:intron 35.0%
ATACCAAGAAGAATGTACTG+TGG + chr6.3:4552147-4552166 None:intergenic 35.0%
ATAGAGAGGTTTGCATTCAA+AGG - chr6.3:4548738-4548757 MS.gene20583:CDS 35.0%
ATCCTTCACTTCTCATTTGT+CGG + chr6.3:4552083-4552102 None:intergenic 35.0%
ATGACAATGAAGCGAAACAT+AGG - chr6.3:4551835-4551854 MS.gene20583:intron 35.0%
ATGCAAGTTCAATAGGGATT+AGG + chr6.3:4548502-4548521 None:intergenic 35.0%
CAAAACCCATAATGTTGCAA+AGG + chr6.3:4548382-4548401 None:intergenic 35.0%
CAATAGCAGAATCCCAAAAT+AGG - chr6.3:4550400-4550419 MS.gene20583:intron 35.0%
CAGCAAAGATGGTTAATAGT+TGG - chr6.3:4548820-4548839 MS.gene20583:CDS 35.0%
CCCATTGTTCTCATATTCTT+CGG + chr6.3:4552222-4552241 None:intergenic 35.0%
CCGAAGAATATGAGAACAAT+GGG - chr6.3:4552219-4552238 MS.gene20583:intron 35.0%
CTAGATATTGAGTAGAATCG+CGG + chr6.3:4548538-4548557 None:intergenic 35.0%
CTCTTAAACATGTTCGTGAA+AGG + chr6.3:4551136-4551155 None:intergenic 35.0%
CTTATCTTTATAAGCCCTCA+AGG + chr6.3:4550506-4550525 None:intergenic 35.0%
CTTGAGGGCTTATAAAGATA+AGG - chr6.3:4550504-4550523 MS.gene20583:intron 35.0%
GAGAAAAGATGAGGACATTA+TGG + chr6.3:4548916-4548935 None:intergenic 35.0%
GAGATTGATGCAAGTTCAAT+AGG + chr6.3:4548509-4548528 None:intergenic 35.0%
GAGTTCAAATCAGTCAAAGA+CGG + chr6.3:4549093-4549112 None:intergenic 35.0%
GGTCATTGTAAGTCTCATAA+CGG + chr6.3:4551581-4551600 None:intergenic 35.0%
GTCATTGTAAGTCTCATAAC+GGG + chr6.3:4551580-4551599 None:intergenic 35.0%
GTGAAATGTAGAATCTGACT+TGG + chr6.3:4549798-4549817 None:intergenic 35.0%
TAGAGAGGTTTGCATTCAAA+GGG - chr6.3:4548739-4548758 MS.gene20583:CDS 35.0%
TATAAACGTGATGCAAAGGA+TGG - chr6.3:4551984-4552003 MS.gene20583:intron 35.0%
TCAATTTGGCTACTGTTGTT+TGG + chr6.3:4549969-4549988 None:intergenic 35.0%
TCCGAAGAATATGAGAACAA+TGG - chr6.3:4552218-4552237 MS.gene20583:intron 35.0%
TCTGCAATGACTAATATACG+TGG - chr6.3:4549584-4549603 MS.gene20583:CDS 35.0%
TCTTACATCCAAGACACATT+TGG - chr6.3:4550986-4551005 MS.gene20583:intron 35.0%
TGAAAAATGTTGCAGGTTGT+TGG + chr6.3:4551804-4551823 None:intergenic 35.0%
TTACCACAGTACATTCTTCT+TGG - chr6.3:4552141-4552160 MS.gene20583:intron 35.0%
TTCTGTAAGCACTTCACTAT+AGG + chr6.3:4551602-4551621 None:intergenic 35.0%
TTGATTGTGAAGTAAGACAG+TGG - chr6.3:4549230-4549249 MS.gene20583:intron 35.0%
TTGCTCATGATTGATCACAA+TGG - chr6.3:4548187-4548206 MS.gene20583:CDS 35.0%
TTGTAGTTGAATTCAACTGC+AGG + chr6.3:4548448-4548467 None:intergenic 35.0%
! GTATCATCTGTGTTACTACA+AGG + chr6.3:4550884-4550903 None:intergenic 35.0%
! TATACAAGTGTTTTCGGAGT+TGG - chr6.3:4552252-4552271 MS.gene20583:intron 35.0%
! TCAGATATTTTCACAGTGGT+TGG - chr6.3:4552168-4552187 MS.gene20583:intron 35.0%
! TTCTTCCAATGGTGGTATTT+TGG - chr6.3:4550926-4550945 MS.gene20583:intron 35.0%
!! ATGAGAAGCATTGTCCATAT+AGG + chr6.3:4551766-4551785 None:intergenic 35.0%
!! ATTACTATTGGCTTCTAGCT+TGG - chr6.3:4552379-4552398 MS.gene20583:intron 35.0%
!! CGATTTTGATGCGATTTTAC+TGG + chr6.3:4550433-4550452 None:intergenic 35.0%
!! CTACAGTTTTTGAAGAGTTC+AGG - chr6.3:4549737-4549756 MS.gene20583:CDS 35.0%
!! TGTTATTGCACTTTGAAGTG+TGG + chr6.3:4551884-4551903 None:intergenic 35.0%
!!! GTAACAAGACCTGTGTTTTT+TGG - chr6.3:4551523-4551542 MS.gene20583:intron 35.0%
AATCCATCTCTACAAGCCTT+TGG - chr6.3:4550827-4550846 MS.gene20583:intron 40.0%
ACATCCAAGACACATTTGGT+TGG - chr6.3:4550990-4551009 MS.gene20583:intron 40.0%
AGAGAGGTTTGCATTCAAAG+GGG - chr6.3:4548740-4548759 MS.gene20583:CDS 40.0%
CAATGAATAATACACGTGGC+TGG - chr6.3:4549393-4549412 MS.gene20583:CDS 40.0%
CAATGACTAATATACGTGGC+TGG - chr6.3:4549588-4549607 MS.gene20583:CDS 40.0%
CAATTCATCTGCAGCAAAGA+TGG - chr6.3:4548809-4548828 MS.gene20583:CDS 40.0%
CACCTATTGCTGATGCTTAT+TGG - chr6.3:4548877-4548896 MS.gene20583:intron 40.0%
CACTTCCATAATGCCATTGT+TGG - chr6.3:4548851-4548870 MS.gene20583:intron 40.0%
CAGACTCCAGCAAAACTTAA+TGG + chr6.3:4549673-4549692 None:intergenic 40.0%
CATAGGATAAGTCACCAACT+CGG - chr6.3:4551481-4551500 MS.gene20583:intron 40.0%
CATCCAAGACACATTTGGTT+GGG - chr6.3:4550991-4551010 MS.gene20583:intron 40.0%
CTGATAACACGACAGGAAAA+AGG - chr6.3:4551961-4551980 MS.gene20583:intron 40.0%
GACACATTTGGTTGGGTAAT+AGG - chr6.3:4550998-4551017 MS.gene20583:intron 40.0%
GATGAGAAATCGGTATGCAT+AGG - chr6.3:4551464-4551483 MS.gene20583:intron 40.0%
GTGTCTGCTACCAAATGTAA+AGG - chr6.3:4551723-4551742 MS.gene20583:CDS 40.0%
GTTCAAAAGGAACTCCAAGT+TGG - chr6.3:4552322-4552341 MS.gene20583:intron 40.0%
TTAATCTCATTAGGCCAAGG+TGG - chr6.3:4550800-4550819 MS.gene20583:intron 40.0%
TTACCCAACCAAATGTGTCT+TGG + chr6.3:4550997-4551016 None:intergenic 40.0%
TTCCATAATGCCATTGTTGG+TGG - chr6.3:4548854-4548873 MS.gene20583:intron 40.0%
! AAGCACTTTTCTTCCAATGG+TGG - chr6.3:4550918-4550937 MS.gene20583:intron 40.0%
! GAAATGAAACGCCTTGCTAT+CGG - chr6.3:4552057-4552076 MS.gene20583:intron 40.0%
! GGAGATCCATTAAGTTTTGC+TGG - chr6.3:4549664-4549683 MS.gene20583:CDS 40.0%
! GTTTTCTGATGATATGGTCG+AGG - chr6.3:4552344-4552363 MS.gene20583:intron 40.0%
! TCACAATTTTCGCGACAAAG+TGG + chr6.3:4551664-4551683 None:intergenic 40.0%
!! CTCTTTGAAACAGTCATTGC+AGG - chr6.3:4548714-4548733 MS.gene20583:CDS 40.0%
!! GAGATGGATTATATCCACCT+TGG + chr6.3:4550817-4550836 None:intergenic 40.0%
!!! TGGTATTTTGGTGTTTGTGC+TGG - chr6.3:4550938-4550957 MS.gene20583:intron 40.0%
ATCCATTCAACTGCGGTATG+AGG + chr6.3:4548417-4548436 None:intergenic 45.0%
ATCCTCATACCGCAGTTGAA+TGG - chr6.3:4548412-4548431 MS.gene20583:CDS 45.0%
CAAAGGGGTAGCCTCAAATT+TGG - chr6.3:4548755-4548774 MS.gene20583:CDS 45.0%
CAACAGCACTAGCAAGATCA+TGG - chr6.3:4550726-4550745 MS.gene20583:intron 45.0%
CAGTCATTGCAGGTATAGAG+AGG - chr6.3:4548724-4548743 MS.gene20583:CDS 45.0%
CCAACGTACGAAAATCTCAG+AGG + chr6.3:4551338-4551357 None:intergenic 45.0%
CGAGAGAATAGAGGAATCGA+GGG - chr6.3:4551306-4551325 MS.gene20583:intron 45.0%
CGTGTTATCAGCTGAGCAAA+CGG + chr6.3:4551952-4551971 None:intergenic 45.0%
GAATATGCTGTGTAGCCTAG+AGG + chr6.3:4551371-4551390 None:intergenic 45.0%
GCCCAATAAGCATCAGCAAT+AGG + chr6.3:4548882-4548901 None:intergenic 45.0%
GTGATGCAAAGGATGGGAAT+CGG - chr6.3:4551991-4552010 MS.gene20583:intron 45.0%
GTTGGATGACGATTACCTCT+AGG - chr6.3:4551353-4551372 MS.gene20583:intron 45.0%
GTTTGTGCTGGAAGCCTAAT+GGG - chr6.3:4550950-4550969 MS.gene20583:intron 45.0%
TCAATGCTGCAAGTCCCTAT+AGG + chr6.3:4550703-4550722 None:intergenic 45.0%
TGCCACCAACAATGGCATTA+TGG + chr6.3:4548859-4548878 None:intergenic 45.0%
TGTTTGTGCTGGAAGCCTAA+TGG - chr6.3:4550949-4550968 MS.gene20583:intron 45.0%
!! ACCAAGTTGATCAGCTCCAA+AGG + chr6.3:4550846-4550865 None:intergenic 45.0%
!! ATGAAGCACTGACTCAGATG+CGG + chr6.3:4549941-4549960 None:intergenic 45.0%
!! ATTGCACTTTGAAGTGTGGC+CGG + chr6.3:4551880-4551899 None:intergenic 45.0%
!! GAAAGAAGCATCGAAATCGC+AGG + chr6.3:4551034-4551053 None:intergenic 45.0%
!!! CCTCTGAGATTTTCGTACGT+TGG - chr6.3:4551335-4551354 MS.gene20583:intron 45.0%
!!! TATTTTTTTAATCAAAATTT+AGG + chr6.3:4549832-4549851 None:intergenic 5.0%
AACAGTGAGCGAGAGAGAAG+AGG + chr6.3:4551393-4551412 None:intergenic 50.0%
GCAAAGGATGGGAATCGGAA+TGG - chr6.3:4551996-4552015 MS.gene20583:intron 50.0%
GCATGAATTGCTGAGCCTCT+TGG + chr6.3:4548061-4548080 None:intergenic 50.0%
GCGAGAGAATAGAGGAATCG+AGG - chr6.3:4551305-4551324 MS.gene20583:intron 50.0%
GCTCCAAAGGCTTGTAGAGA+TGG + chr6.3:4550833-4550852 None:intergenic 50.0%
GGCCGACAAATGAGAAGTGA+AGG - chr6.3:4552078-4552097 MS.gene20583:intron 50.0%
TCATTTGTCGGCCGATAGCA+AGG + chr6.3:4552071-4552090 None:intergenic 50.0%
TGACGTGACAGTAACCGAGT+TGG + chr6.3:4551498-4551517 None:intergenic 50.0%
TGATATGGTCGAGGCACGTT+TGG - chr6.3:4552353-4552372 MS.gene20583:intron 50.0%
TGCTCAGCTGATAACACGAC+AGG - chr6.3:4551954-4551973 MS.gene20583:intron 50.0%
! CTGGTGGACAGAAAACCAAG+AGG - chr6.3:4548043-4548062 MS.gene20583:CDS 50.0%
! GCAATAGGTGCCACCAACAA+TGG + chr6.3:4548867-4548886 None:intergenic 50.0%
!! GCCTTTGGAGCTGATCAACT+TGG - chr6.3:4550842-4550861 MS.gene20583:intron 50.0%
TGCAAAGGAGATTACGGCCG+TGG + chr6.3:4548367-4548386 None:intergenic 55.0%
!! GCACTTTGAAGTGTGGCCGG+TGG + chr6.3:4551877-4551896 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 4548039 4552476 4548039 ID=MS.gene20583
chr6.3 mRNA 4548039 4552476 4548039 ID=MS.gene20583.t1;Parent=MS.gene20583
chr6.3 exon 4552422 4552476 4552422 ID=MS.gene20583.t1.exon1;Parent=MS.gene20583.t1
chr6.3 CDS 4552422 4552476 4552422 ID=cds.MS.gene20583.t1;Parent=MS.gene20583.t1
chr6.3 exon 4551571 4551788 4551571 ID=MS.gene20583.t1.exon2;Parent=MS.gene20583.t1
chr6.3 CDS 4551571 4551788 4551571 ID=cds.MS.gene20583.t1;Parent=MS.gene20583.t1
chr6.3 exon 4549282 4549808 4549282 ID=MS.gene20583.t1.exon3;Parent=MS.gene20583.t1
chr6.3 CDS 4549282 4549808 4549282 ID=cds.MS.gene20583.t1;Parent=MS.gene20583.t1
chr6.3 exon 4548039 4548867 4548039 ID=MS.gene20583.t1.exon4;Parent=MS.gene20583.t1
chr6.3 CDS 4548039 4548867 4548039 ID=cds.MS.gene20583.t1;Parent=MS.gene20583.t1
Gene Sequence

>MS.gene20583

ATGGCTGGTGGACAGAAAACCAAGAGGCTCAGCAATTCATGCATTCTCCTCATAGGTAAACTCTATGTGTATCTTTATCTTTGTATATAAATATATGTTTATTATTTGTAGTTGCATTTTCAAGTTTCAACCTTATTAGGGATGAATTTTGCTCATGATTGATCACAATGGTTGTTGAATTAAAGCATATGTTTGGATTGAGAAAACCATTTGTGATATTTTCTCTAACTTTATCTTAGTTTCCTTCTTAAGCCTCAATTCCATTGATTATATGTAATTTTCTGCTGAAAAACCTAGGAAACTAGTCTTTAATAGGATTTATTTTCCACGGCCGTAATCTCCTTTGCAACATTATGGGTTTTGATGTCTCTGCATCCTCATACCGCAGTTGAATGGATTTGAATTGCCTGCAGTTGAATTCAACTACAATGTCCTGTAGTTGAATTTAACTATAGGCAATCCTAATCCCTATTGAACTTGCATCAATCTCATTTAACCGCGATTCTACTCAATATCTAGAATCGCGACACAACTATTACCATGATTTAAAACTCTAGAAGAGAGCCATAGTCATAATTCAAACAATATTCTATTATTCTTGCATGCCCTTTTGATTTATGATATTCTATTATATCATTCTTAGTGTAAAAATTAAATTTTTACAATTTTTTTGTGCTCTTTGAAACAGTCATTGCAGGTATAGAGAGGTTTGCATTCAAAGGGGTAGCCTCAAATTTGGTAACTTATCTAACTGATGTTGTGGACTTAAGCAATTCATCTGCAGCAAAGATGGTTAATAGTTGGGTTGGATTCACTTCCATAATGCCATTGTTGGTGGCACCTATTGCTGATGCTTATTGGGCTAAATATTCCACCATAATGTCCTCATCTTTTCTCTATGTTATGGTGAGTCACCTTCCACAAAATTATATACTTCCTTCCTTTTGCATTTACATATTTACAACATAAATTATCTAACTTTATAGAGATATATTTGATTTGATTTCTAACATTATTATTAACTAAAGTTACAGTAATGATCATCTTACAACCGTCTTTGACTGATTTGAACTCAGTCATTTAAGGTTACAAAGTCAAACTCATACCACTGAACTGATATTTCATACAAATATTTGGCGTCTAAGTTCTAACATTCAAAAACAGAATTATTTTAAACCTATAGTTGATTACTTGATTGTGAAGTAAGACAGTGGATTTTATGAAAAAGTTGAAATGTAAAAATTGATTTTAAACTCATAGTGAAAGTTGCATTTTTATAATCATTGCAAGATCATTTCATTTTTTTTACTTGTTATAATATATTTGTCATAAAGCTTTACTCAAACTTTATATGCAATGAATAATACACGTGGCTGGAAATTTACCTGACCTACTACTTTATACAAATACTATAGTATTAGCATTAGGAAATCCATTAATTTTGTTATAGTATAGTATTAGAATTTTCATGATTATTCCAAGATTATTCCATTTCTTTTTTTTGTTTTTATAATATATTTGTTATAAAGCTTTACTCAAAATTTATCTGCAATGACTAATATACGTGGCTGGAAATTTAGATGTCTTACTTTATATATAGTATATACTATATAGTATTAGCATTAGGAGATCCATTAAGTTTTGCTGGAGTCTGAGTCATAACCACTCATATTTAAGCATATATGAGACTAAAGTTTTCTACAGTTTTTGAAGAGTTCAGGTGCCCTTATCAATCAATGAACAATTTGTTACTTTTCCAAGTCAGATTCTACATTTCACTAGAATATCCACCTAAATTTTGATTAAAAAAATAATATTAAACTTTTTTTCATTTAATCTACAGAAGAAAATGTTTACCAATTTATTATTATTGTCTACGTGTACGTGTCAGAGTCATGTCCGCATCTGAGTCAGTGCTTCATAATTTCCAAACAACAGTAGCCAAATTGATACAACATACACATAAAAGTTGTCACTATATCTAAACAGTATAGTTGATACAACATACACATAAAAGTTGTCACTATATCTAAACAGTATAGTTAATAGATAAGGCAATAATGCCTCTATGATTATAAAAATTTCATATCTTACTTTACTTTGAGAAAAAGTAAACCACTTCTTATTTTTTTAAGTTATTCAATTAAGCACCATATGCTAAAAGGATATAATAATTGCAAAAATCTCTTAGTAGAATGAACTGAAGTTACTAACCAATTATATAGACATGAAACCATGATTCTGATGTCATGATCTTATATATTCACCAAAACAAACAGGTAAAACCATTGTTGTCAAAATCACAACTTAAATTCTAAAATTCAGGATTTTGCGACTTTATTCACCTTCAACAACTTAAATCAATAGCAGAATCCCAAAATAGGAAAATTCCCAGTAAAATCGCATCAAAATCGTGAAATCCATACAAAATCACATAATTTCAAAGATGTTATCATAAGCTAATCCTTGAGGGCTTATAAAGATAAGGTTAAAACAACTTATGGACATATCGTAAGCCGTTTCTATGCATTCTCAAAAAGGCTCGCAAATGCTTATGTCAGTAGATAAACTCAAATAAGCCAATTCAAACAGAAAGTTACTGTTAATTTGAATATTCAACTTTTTCTTCACTAGTCAATGACATTTTTCTTGTGTTTTCTTCCTATAGGGACTTGCAGCATTGACAACAACAGCACTAGCAAGATCATGGCATCACAATAACAGATCAATGTCATCTTCATTTCTTTCATTATCTCTCTATTTAATCTCATTAGGCCAAGGTGGATATAATCCATCTCTACAAGCCTTTGGAGCTGATCAACTTGGTGAAGATGAAGAATTACCTTGTAGTAACACAGATGATACAAGTAGCAACAAAAAAGCACTTTTCTTCCAATGGTGGTATTTTGGTGTTTGTGCTGGAAGCCTAATGGGTGTAACATTCATGTCTTACATCCAAGACACATTTGGTTGGGTAATAGGGTTTGCTATACCTGCGATTTCGATGCTTCTTTCTATCTTGATTTTCTCTAGTGGAAGCTCTATATATTCGTATAAGCAACAAGATGATGATGATGATCTTCGAGATAAGAAGCCTTTCACGAACATGTTTAAGAGTATAAAAGAATCTGCATTGAAATGCTTCCATTGTGAAATTACTCTACCAAATGACAAGTCTGAAAATGTCGAACTAGAGTAAGTTACACTTTCATACACATAAATTTACATTTACTAAATTACTGTTTATAATAAGCAAAAAAAAATGTGCGAGAGAATAGAGGAATCGAGGGAATTTGCCTCTGAGATTTTCGTACGTTGGATGACGATTACCTCTAGGCTACACAGCATATTCCTCTTCTCTCTCGCTCACTGTTTCCGCCATATTGTTTAACCTAATTCTGAAAAGGACAAGATTACACATATGAGATGAGAAATCGGTATGCATAGGATAAGTCACCAACTCGGTTACTGTCACGTCAGTAACGTAACAAGACCTGTGTTTTTTGGTAAGAGAATGTGTGAAAAATGGTTACGTGTACCCGTTATGAGACTTACAATGACCTATAGTGAAGTGCTTACAGAAAAACATTTATTTTTCTTGTGATACAGGCTTCAAGAGAGACCACTTTGTCGCGAAAATTGTGAAAGCATTAAGGTCATAAATAAGGATTCAAAAATTAGCATGTGTCTGCTACCAAATGTAAAGGTTATGATTAAGCTATTGCCTATATGGACAATGCTTCTCATGTTTGCAGTGATTTTCCAACAACCTGCAACATTTTTCACAAAACAAGGCATGACAATGAAGCGAAACATAGGTTCAAATTTCAAGATACCACCGGCCACACTTCAAAGTGCAATAACATTGTCCATAATACTGTTAATGCCGTTATACGACAGAGTTTTTATACCGTTTGCTCAGCTGATAACACGACAGGAAAAAGGTATAAACGTGATGCAAAGGATGGGAATCGGAATGGTACTCTCAATCATAGCAATGATTATCGCGGCACTAGTTGAAATGAAACGCCTTGCTATCGGCCGACAAATGAGAAGTGAAGGATTACTATCAGAAATAGTACCAATAAGCATTTTCTGGTTGTTACCACAGTACATTCTTCTTGGTATATCAGATATTTTCACAGTGGTTGGTATGCAAGAATTTTTTTACGGTGAAGTTCCGAAGAATATGAGAACAATGGGAATTGCATTGTATACAAGTGTTTTCGGAGTTGGAAGCTTTGTTAGTGCATTGATGATTACACTTGTTGAAGTATACACAAGTTCAAAAGGAACTCCAAGTTGGTTTTCTGATGATATGGTCGAGGCACGTTTGGATAATTACTATTGGCTTCTAGCTTGGTTAAGTTCAATTAGCTTATTGTTGTATACACTATTGTGTAAATATTACTATAATAAGAGTGAATCAGATAGTTAA
Protein sequence

>MS.gene20583.t1

MAGGQKTKRLSNSCILLIVIAGIERFAFKGVASNLVTYLTDVVDLSNSSAAKMVNSWVGFTSIMPLLVAPIADAYWAKYSTIMSSSFLYVMGLAALTTTALARSWHHNNRSMSSSFLSLSLYLISLGQGGYNPSLQAFGADQLGEDEELPCSNTDDTSSNKKALFFQWWYFGVCAGSLMGVTFMSYIQDTFGWVIGFAIPAISMLLSILIFSSGSSIYSYKQQDDDDDLRDKKPFTNMFKSIKESALKCFHCEITLPNDKSENVELELQERPLCRENCESIKVINKDSKISMCLLPNVKVMIKLLPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITLSIILLMPLYDRVFIPFAQLITRQEKGINVMQRMGIGMVLSIIAMIIAALVEMKRLAIGRQMRSEGLLSEIVPISIFWLLPQYILLGISDIFTVVGMQEFFYGEVPKNMRTMGIALYTSVFGVGSFVSALMITLVEVYTSSKGTPSWFSDDMVEARLDNYYWLLAWLSSISLLLYTLLCKYYYNKSESDS