AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene20604

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20604.t1 MTR_6g008170 93.939 528 28 1 1 528 31 554 0.0 890
MS.gene20604.t1 MTR_3g078340 47.948 536 250 10 2 525 8 526 1.19e-147 434
MS.gene20604.t1 MTR_4g063800 29.167 312 215 3 188 496 329 637 2.64e-32 131
MS.gene20604.t1 MTR_4g063800 24.611 386 241 11 22 387 256 611 6.91e-14 74.7
MS.gene20604.t1 MTR_4g485520 26.619 278 199 3 213 488 206 480 1.52e-27 115
MS.gene20604.t1 MTR_1g094215 28.990 307 213 3 189 493 139 442 2.96e-27 114
MS.gene20604.t1 MTR_4g485520 26.619 278 199 3 213 488 374 648 3.91e-27 115
MS.gene20604.t1 MTR_3g466220 28.378 296 203 3 200 489 536 828 6.86e-27 115
MS.gene20604.t1 MTR_3g466220 28.378 296 203 3 200 489 515 807 7.67e-27 115
MS.gene20604.t1 MTR_1g094215 28.990 307 213 3 189 493 322 625 1.57e-26 114
MS.gene20604.t1 MTR_7g078330 27.413 259 183 2 234 490 389 644 1.62e-23 105
MS.gene20604.t1 MTR_1g069845 26.736 288 203 3 205 489 316 598 2.54e-23 104
MS.gene20604.t1 MTR_1g069845 26.736 288 203 3 205 489 437 719 4.09e-23 103
MS.gene20604.t1 MTR_1g069845 26.736 288 203 3 205 489 433 715 4.37e-23 103
MS.gene20604.t1 MTR_7g059405 26.877 253 182 1 234 486 383 632 5.89e-23 103
MS.gene20604.t1 MTR_5g083030 24.946 465 229 14 7 454 265 626 1.88e-20 95.5
MS.gene20604.t1 MTR_1g018180 23.105 277 208 2 214 488 63 336 1.62e-18 87.4
MS.gene20604.t1 MTR_3g103050 22.388 268 197 4 228 488 67 330 9.31e-16 79.0
MS.gene20604.t1 MTR_7g053260 25.893 224 162 3 263 484 226 447 8.47e-15 77.0
MS.gene20604.t1 MTR_2g026130 25.418 299 213 3 201 492 159 454 4.10e-14 75.1
MS.gene20604.t1 MTR_7g116600 26.168 214 154 3 273 484 237 448 1.47e-12 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20604.t1 AT5G40140 48.842 518 228 9 22 528 59 550 1.23e-144 427
MS.gene20604.t1 AT5G65200 42.264 530 250 12 21 514 33 542 2.30e-121 368
MS.gene20604.t1 AT5G62560 47.576 330 160 5 209 528 233 559 3.57e-86 277
MS.gene20604.t1 AT5G62560 61.429 70 27 0 22 91 32 101 1.95e-23 104
MS.gene20604.t1 AT5G67340 25.105 478 325 9 22 487 241 697 7.67e-31 127
MS.gene20604.t1 AT5G67340 25.105 478 325 9 22 487 241 697 7.67e-31 127
MS.gene20604.t1 AT2G23140 28.058 278 196 2 213 489 355 629 1.72e-28 120
MS.gene20604.t1 AT2G23140 28.058 278 196 2 213 489 355 629 1.72e-28 120
MS.gene20604.t1 AT2G23140 28.058 278 196 2 213 489 547 821 4.27e-28 119
MS.gene20604.t1 AT2G23140 28.058 278 196 2 213 489 544 818 4.87e-28 119
MS.gene20604.t1 AT2G23140 28.058 278 196 2 213 489 544 818 4.87e-28 119
MS.gene20604.t1 AT3G46510 26.909 275 189 4 234 499 376 647 1.85e-24 107
MS.gene20604.t1 AT2G28830 28.623 276 188 5 213 483 286 557 3.55e-24 106
MS.gene20604.t1 AT2G28830 24.289 387 252 9 19 387 182 545 1.40e-15 80.1
MS.gene20604.t1 AT3G54850 28.958 259 179 3 234 490 369 624 4.45e-24 106
MS.gene20604.t1 AT3G47820 51.648 91 39 2 2 87 8 98 1.57e-23 104
MS.gene20604.t1 AT1G23030 25.581 258 186 2 234 488 355 609 8.66e-23 102
MS.gene20604.t1 AT1G23030 24.937 397 253 13 7 387 225 592 8.68e-14 74.3
MS.gene20604.t1 AT1G71020 26.259 278 198 3 215 488 198 472 3.35e-22 100
MS.gene20604.t1 AT1G71020 26.259 278 198 3 215 488 346 620 7.00e-22 99.8
MS.gene20604.t1 AT5G42340 28.846 260 178 3 234 490 403 658 1.11e-20 96.3
MS.gene20604.t1 AT3G54790 25.581 258 187 3 234 489 496 750 1.76e-20 95.9
MS.gene20604.t1 AT3G54790 25.581 258 187 3 234 489 496 750 1.76e-20 95.9
MS.gene20604.t1 AT3G54790 25.581 258 187 3 234 489 460 714 1.86e-20 95.9
MS.gene20604.t1 AT3G01400 23.106 264 196 3 228 488 81 340 3.28e-18 86.7
MS.gene20604.t1 AT5G58680 25.283 265 190 4 228 488 79 339 6.92e-17 82.8
MS.gene20604.t1 AT3G07360 22.622 473 265 14 22 488 75 452 1.39e-16 82.8
MS.gene20604.t1 AT4G16490 25.249 301 213 4 201 492 169 466 2.15e-13 72.8
MS.gene20604.t1 AT3G07360 24.229 227 167 3 265 488 93 317 4.42e-13 70.9
MS.gene20604.t1 AT3G07360 24.229 227 167 3 265 488 93 317 4.42e-13 70.9
MS.gene20604.t1 AT3G07360 24.229 227 167 3 265 488 93 317 4.42e-13 70.9
MS.gene20604.t1 AT3G07360 24.229 227 167 3 265 488 93 317 4.42e-13 70.9
MS.gene20604.t1 AT3G07360 24.229 227 167 3 265 488 93 317 4.42e-13 70.9
MS.gene20604.t1 AT3G07360 24.229 227 167 3 265 488 93 317 4.42e-13 70.9
MS.gene20604.t1 AT3G07360 24.229 227 167 3 265 488 93 317 4.42e-13 70.9
MS.gene20604.t1 AT3G07360 24.229 227 167 3 265 488 93 317 4.42e-13 70.9
MS.gene20604.t1 AT3G07360 24.229 227 167 3 265 488 93 317 4.42e-13 70.9
MS.gene20604.t1 AT4G31890 26.136 264 183 6 234 487 167 428 1.18e-12 70.9
MS.gene20604.t1 AT4G31890 26.136 264 183 6 234 487 167 428 1.18e-12 70.9
MS.gene20604.t1 AT4G31890 26.136 264 183 6 234 487 167 428 1.18e-12 70.9
MS.gene20604.t1 AT2G25130 25.660 265 184 6 234 487 133 395 9.80e-12 67.8
MS.gene20604.t1 AT1G60190 27.706 231 155 7 229 448 393 622 5.73e-11 65.9

Find 124 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTATTAAGGTTGTGAAATT+TGG 0.116884 6.3:+4338256 None:intergenic
TTGTTAATGTTGGGTAATTT+AGG 0.144924 6.3:-4337281 MS.gene20604:CDS
CTTGAGGTGGGTTTAGGTTT+TGG 0.149477 6.3:+4338413 None:intergenic
TGGGAGGAGTTGCTTGATTC+AGG 0.168681 6.3:-4336969 MS.gene20604:CDS
GAATTTCTATGCCCCATTTC+TGG 0.177070 6.3:-4338391 MS.gene20604:CDS
TTTCAGTTGTGGTTAGATTT+TGG 0.190072 6.3:+4338158 None:intergenic
GTTACTATTTCTTCTTCTTC+TGG 0.210667 6.3:+4337833 None:intergenic
GGTGGTGCCATCAGCAAGTT+GGG 0.245498 6.3:+4338279 None:intergenic
TGTTAATGTTGGGTAATTTA+GGG 0.261769 6.3:-4337280 MS.gene20604:CDS
TCATGGCGGGTTGAGGTTTA+AGG 0.264879 6.3:-4337126 MS.gene20604:CDS
GTATTAAGGTTGTGAAATTT+GGG 0.271357 6.3:+4338257 None:intergenic
CGGTGTTGTGGAGTGTTTGA+TGG 0.278918 6.3:-4337222 MS.gene20604:CDS
GAAATTCTTGAGGTGGGTTT+AGG 0.305304 6.3:+4338407 None:intergenic
TCTTCTTCTGGTGTTGTTGA+AGG 0.309732 6.3:+4337845 None:intergenic
TGTCGTTTCTGTTTGATACT+AGG 0.312491 6.3:+4338032 None:intergenic
GGTCAATGCACTTGCTTCAT+TGG 0.314231 6.3:-4337654 MS.gene20604:CDS
CTTCTACTATAACCAATTCA+TGG 0.333290 6.3:+4337798 None:intergenic
TTTGGAATTTGGTTTGTGTT+TGG 0.344624 6.3:+4338197 None:intergenic
TGAAAAGGTGAGGAGGATAT+TGG 0.347944 6.3:-4337033 MS.gene20604:CDS
TGTCTTTAGTGAGGAGTAAT+CGG 0.350050 6.3:-4337379 MS.gene20604:CDS
GGAAGAGGAGGAAGTGGATT+GGG 0.352883 6.3:-4336988 MS.gene20604:CDS
GAGTTCAACTTTGCACCAAT+AGG 0.356098 6.3:-4337727 MS.gene20604:CDS
TTTGCTTCACGCGCTTAAAT+CGG 0.374055 6.3:-4337447 MS.gene20604:CDS
TGGTGCCATCAGCAAGTTGG+GGG 0.378655 6.3:+4338281 None:intergenic
TGGAAGAGGAGGAAGTGGAT+TGG 0.382490 6.3:-4336989 MS.gene20604:CDS
AGAGGTGGAAGAGGAGGAAG+TGG 0.384680 6.3:-4336994 MS.gene20604:CDS
GAGGATTTGAGGTTAAGATT+TGG 0.399690 6.3:+4338235 None:intergenic
ATGTTGGGTAATTTAGGGTT+TGG 0.406947 6.3:-4337275 MS.gene20604:CDS
GGGTGGTGCCATCAGCAAGT+TGG 0.410050 6.3:+4338278 None:intergenic
GTGGTGCCATCAGCAAGTTG+GGG 0.416360 6.3:+4338280 None:intergenic
GGGAGGAGTTGCTTGATTCA+GGG 0.416942 6.3:-4336968 MS.gene20604:CDS
TACAGGCTTGGACTGAGGTT+CGG 0.422905 6.3:+4338320 None:intergenic
TTTGTTGGGGATGGTTAAGT+CGG 0.428089 6.3:-4337324 MS.gene20604:CDS
AGACATGAGAGAACCAGAAA+TGG 0.431518 6.3:+4338378 None:intergenic
AACCCCAACACAACTCTCTC+TGG 0.431543 6.3:+4337163 None:intergenic
TCAAATCCTCCATTCTCAAA+TGG 0.433697 6.3:-4338222 MS.gene20604:CDS
TGGCCAGAGGAGACAATTAC+AGG 0.434252 6.3:+4338352 None:intergenic
AGGGTTTGGATCGGATGGTC+GGG 0.435245 6.3:-4337261 MS.gene20604:CDS
GAGGTTAAGATTTGGTATTA+AGG 0.439265 6.3:+4338243 None:intergenic
GGTTAAGCTAGGGTTTGTTT+CGG 0.441141 6.3:-4337348 MS.gene20604:CDS
ATTTGAGAATGGAGGATTTG+AGG 0.446332 6.3:+4338224 None:intergenic
GACATGAGAGAACCAGAAAT+GGG 0.446822 6.3:+4338379 None:intergenic
TTCATGTGCGATGTTTAGTT+TGG 0.447699 6.3:-4337522 MS.gene20604:CDS
CATTGAGTCATGGCGGGTTG+AGG 0.451605 6.3:-4337133 MS.gene20604:CDS
AAAGCTCAGAAACCATGAAT+TGG 0.460020 6.3:-4337810 MS.gene20604:CDS
CGACCAGAGAGAGTTGTGTT+GGG 0.460168 6.3:-4337166 MS.gene20604:CDS
GGACGGGTCAAGTGTTAAAT+CGG 0.463411 6.3:-4336907 MS.gene20604:CDS
CGGGTTGAGGTTTAAGGCGG+TGG 0.465510 6.3:-4337120 MS.gene20604:CDS
ATGGATTTATTGTGTGGGAC+CGG 0.467229 6.3:-4337203 MS.gene20604:CDS
AGTTCAACTTTGCACCAATA+GGG 0.470052 6.3:-4337726 MS.gene20604:CDS
GTCTTTAGTGAGGAGTAATC+GGG 0.470251 6.3:-4337378 MS.gene20604:CDS
CAAAGAACATAGTACCCTAT+TGG 0.475960 6.3:+4337712 None:intergenic
GACGCGCCATGACTCAGGTT+TGG 0.483873 6.3:-4337414 MS.gene20604:CDS
TAGGGTTTGGATCGGATGGT+CGG 0.485284 6.3:-4337262 MS.gene20604:CDS
TGTGGAAATGTTGCAAAAGA+TGG 0.488035 6.3:-4337081 MS.gene20604:CDS
GGATGGTCGGGCTGCTATGT+TGG 0.488457 6.3:-4337249 MS.gene20604:CDS
GAGGTTTAAGGCGGTGGCGA+AGG 0.489134 6.3:-4337114 MS.gene20604:CDS
TGTTTGATGGATTTATTGTG+TGG 0.493639 6.3:-4337209 MS.gene20604:CDS
GAGGAGTAATCGGGCTAAGA+TGG 0.497030 6.3:-4337369 MS.gene20604:CDS
GGCATAGAAATTCTTGAGGT+GGG 0.497777 6.3:+4338401 None:intergenic
GATCCTGTAATTGTCTCCTC+TGG 0.498650 6.3:-4338355 MS.gene20604:CDS
GGCGAAGGAGGTTGGAGTTG+TGG 0.503945 6.3:-4337099 MS.gene20604:CDS
TGTTTGGATCCATTTGAGAA+TGG 0.506237 6.3:+4338213 None:intergenic
CGGGCTAAGATGGTTAAGCT+AGG 0.507277 6.3:-4337359 MS.gene20604:CDS
CAACTACTCCAAAGATGAAG+TGG 0.507317 6.3:-4338474 None:intergenic
GTTTGGATCGTGTGAATCGC+AGG 0.509854 6.3:-4337552 MS.gene20604:CDS
AACCTCAAAATCTCGATCAA+TGG 0.512851 6.3:+4337572 None:intergenic
AGAGGAGGAAGTGGATTGGG+AGG 0.513596 6.3:-4336985 MS.gene20604:CDS
GGTTAAGTCGGGTCATATGA+TGG 0.515701 6.3:-4337312 MS.gene20604:CDS
TTAACAAAGTGAAGATAGTC+CGG 0.515994 6.3:-4337610 MS.gene20604:CDS
GAATTGGTTATAGTAGAAGA+AGG 0.516593 6.3:-4337794 MS.gene20604:CDS
GATTTAAGCGCGTGAAGCAA+AGG 0.517203 6.3:+4337449 None:intergenic
TTTGTCATTTGTCTTTAGTG+AGG 0.523905 6.3:-4337388 MS.gene20604:CDS
TGGATTTATTGTGTGGGACC+GGG 0.524333 6.3:-4337202 MS.gene20604:CDS
GAAAAGACGCGCCATGACTC+AGG 0.531395 6.3:-4337419 MS.gene20604:CDS
TTGGACTGAGGTTCGGTCAA+AGG 0.531932 6.3:+4338327 None:intergenic
AAGGCGGTGGCGAAGGAGGT+TGG 0.532422 6.3:-4337107 MS.gene20604:CDS
GAGCGAGAAGGCTAATGAAA+AGG 0.536039 6.3:-4337048 MS.gene20604:CDS
TCGACCAGAGAGAGTTGTGT+TGG 0.536889 6.3:-4337167 MS.gene20604:CDS
TTGTTGGGGATGGTTAAGTC+GGG 0.538225 6.3:-4337323 MS.gene20604:CDS
GGGTAATTTAGGGTTTGGAT+CGG 0.538407 6.3:-4337270 MS.gene20604:CDS
TGTTAACTTTCTCAAGTGAA+AGG 0.538590 6.3:+4337627 None:intergenic
CTCAAAATCTCGATCAATGG+TGG 0.538923 6.3:+4337575 None:intergenic
TTTATTGTGTGGGACCGGGT+TGG 0.548105 6.3:-4337198 MS.gene20604:CDS
AAAGTGAAGATAGTCCGGTC+AGG 0.548857 6.3:-4337605 MS.gene20604:CDS
AATTTAGGGTTTGGATCGGA+TGG 0.549330 6.3:-4337266 MS.gene20604:CDS
GTTTGATGGATTTATTGTGT+GGG 0.554582 6.3:-4337208 MS.gene20604:CDS
CGACTTAACAGTGGATTGGA+CGG 0.560410 6.3:-4336924 MS.gene20604:CDS
CTGAGGTTCGGTCAAAGGAA+TGG 0.562041 6.3:+4338332 None:intergenic
GGGCATAGAAATTCTTGAGG+TGG 0.565330 6.3:+4338400 None:intergenic
TTGCTTGATTCAGGGTTCAG+TGG 0.566963 6.3:-4336960 MS.gene20604:CDS
GATGATAATAAAACTGCGAT+TGG 0.572462 6.3:-4337491 MS.gene20604:CDS
AAAGGTGAGGAGGATATTGG+AGG 0.573257 6.3:-4337030 MS.gene20604:CDS
GAGTCGACTTAACAGTGGAT+TGG 0.574299 6.3:-4336928 MS.gene20604:CDS
GTTTAAGGCGGTGGCGAAGG+AGG 0.574627 6.3:-4337111 MS.gene20604:CDS
TTCCTCTGAGCTTGAGTACG+AGG 0.578202 6.3:+4337964 None:intergenic
GACCAGAGAGAGTTGTGTTG+GGG 0.581160 6.3:-4337165 MS.gene20604:CDS
AGGCTAATGAAAAGGTGAGG+AGG 0.581449 6.3:-4337040 MS.gene20604:CDS
CGGGCTGCTATGTTGGATGT+CGG 0.582096 6.3:-4337242 MS.gene20604:CDS
GGGCTAAGATGGTTAAGCTA+GGG 0.583294 6.3:-4337358 MS.gene20604:CDS
TTGGATCCATTTGAGAATGG+AGG 0.585432 6.3:+4338216 None:intergenic
TATTAAGGTTGTGAAATTTG+GGG 0.588590 6.3:+4338258 None:intergenic
TAACAGAAACTTTGAAGCTG+TGG 0.590142 6.3:+4337896 None:intergenic
GGTTCAAGTTCAGATGAAGA+AGG 0.600403 6.3:+4337866 None:intergenic
GACTTAACAGTGGATTGGAC+GGG 0.605958 6.3:-4336923 MS.gene20604:CDS
TGTATGCATTGAGTCATGGC+GGG 0.611163 6.3:-4337139 MS.gene20604:CDS
AAAGTGCCAAACCTGAGTCA+TGG 0.613449 6.3:+4337408 None:intergenic
ATGGTGGAACAATTCCTGAC+CGG 0.620028 6.3:+4337591 None:intergenic
AAGACATAAGTTTGAGTACG+AGG 0.624042 6.3:+4338134 None:intergenic
AAGACATTAGTTTGAGTACG+AGG 0.628359 6.3:+4338083 None:intergenic
TAAGGTTGTGAAATTTGGGG+TGG 0.633892 6.3:+4338261 None:intergenic
CAGAAACTTTGAAGCTGTGG+TGG 0.634080 6.3:+4337899 None:intergenic
TTGTATGCATTGAGTCATGG+CGG 0.636106 6.3:-4337140 MS.gene20604:CDS
GGAGAAAATGAAGAGCGAGA+AGG 0.651983 6.3:-4337060 MS.gene20604:CDS
GGTCGACTCAGACTCCAACC+CGG 0.654131 6.3:+4337184 None:intergenic
GGTGCCATCAGCAAGTTGGG+GGG 0.659317 6.3:+4338282 None:intergenic
ATGGGGCATAGAAATTCTTG+AGG 0.675781 6.3:+4338397 None:intergenic
TGGCGGGTTGAGGTTTAAGG+CGG 0.677131 6.3:-4337123 MS.gene20604:CDS
AGAAGGCTAATGAAAAGGTG+AGG 0.679571 6.3:-4337043 MS.gene20604:CDS
TATGTTGGATGTCGGTGTTG+TGG 0.690455 6.3:-4337234 MS.gene20604:CDS
TCGGTCAAAGGAATGGCCAG+AGG 0.694100 6.3:+4338339 None:intergenic
ACATGAGAGAACCAGAAATG+GGG 0.695758 6.3:+4338380 None:intergenic
ACTATGAGTCGACTTAACAG+TGG 0.702437 6.3:-4336933 MS.gene20604:CDS
AACCTCGTACTCAAGCTCAG+AGG 0.703022 6.3:-4337966 MS.gene20604:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAAAATCACAAGAACGAATT+TGG - chr6.3:4337600-4337619 MS.gene20604:CDS 25.0%
! GTATTAAGGTTGTGAAATTT+GGG + chr6.3:4337102-4337121 None:intergenic 25.0%
! TATTAAGGTTGTGAAATTTG+GGG + chr6.3:4337101-4337120 None:intergenic 25.0%
! TGTTAATGTTGGGTAATTTA+GGG - chr6.3:4338076-4338095 MS.gene20604:CDS 25.0%
! TTGTTAATGTTGGGTAATTT+AGG - chr6.3:4338075-4338094 MS.gene20604:CDS 25.0%
! TTTGATTGTGTCTAAAAATG+AGG - chr6.3:4337672-4337691 MS.gene20604:CDS 25.0%
!!! GATCAAGTTTTGTTAATGTT+GGG - chr6.3:4338066-4338085 MS.gene20604:CDS 25.0%
CTTCTACTATAACCAATTCA+TGG + chr6.3:4337561-4337580 None:intergenic 30.0%
GAATTGGTTATAGTAGAAGA+AGG - chr6.3:4337562-4337581 MS.gene20604:CDS 30.0%
GATGATAATAAAACTGCGAT+TGG - chr6.3:4337865-4337884 MS.gene20604:CDS 30.0%
GGTATTAAGGTTGTGAAATT+TGG + chr6.3:4337103-4337122 None:intergenic 30.0%
TGTTAACTTTCTCAAGTGAA+AGG + chr6.3:4337732-4337751 None:intergenic 30.0%
TTAACAAAGTGAAGATAGTC+CGG - chr6.3:4337746-4337765 MS.gene20604:CDS 30.0%
! GAGGTTAAGATTTGGTATTA+AGG + chr6.3:4337116-4337135 None:intergenic 30.0%
! GGTATAGTTGAGATTTTTAC+AGG + chr6.3:4337056-4337075 None:intergenic 30.0%
! GTTACTATTTCTTCTTCTTC+TGG + chr6.3:4337526-4337545 None:intergenic 30.0%
! TTTCAGTTGTGGTTAGATTT+TGG + chr6.3:4337201-4337220 None:intergenic 30.0%
! TTTGTCATTTGTCTTTAGTG+AGG - chr6.3:4337968-4337987 MS.gene20604:CDS 30.0%
!! GTTTGATGGATTTATTGTGT+GGG - chr6.3:4338148-4338167 MS.gene20604:CDS 30.0%
!! TGTTTGATGGATTTATTGTG+TGG - chr6.3:4338147-4338166 MS.gene20604:CDS 30.0%
!! TTTGGAATTTGGTTTGTGTT+TGG + chr6.3:4337162-4337181 None:intergenic 30.0%
!!! ATTTTGGTTGGTTTGGATTT+TGG + chr6.3:4337185-4337204 None:intergenic 30.0%
!!! GGATCAAGTTTTGTTAATGT+TGG - chr6.3:4338065-4338084 MS.gene20604:CDS 30.0%
!!! TTGGATTTTGGTTTGGAATT+TGG + chr6.3:4337173-4337192 None:intergenic 30.0%
AAAGCTCAGAAACCATGAAT+TGG - chr6.3:4337546-4337565 MS.gene20604:CDS 35.0%
AACCTCAAAATCTCGATCAA+TGG + chr6.3:4337787-4337806 None:intergenic 35.0%
AAGACATAAGTTTGAGTACG+AGG + chr6.3:4337225-4337244 None:intergenic 35.0%
AGTTCAACTTTGCACCAATA+GGG - chr6.3:4337630-4337649 MS.gene20604:CDS 35.0%
ATTTGAGAATGGAGGATTTG+AGG + chr6.3:4337135-4337154 None:intergenic 35.0%
CAAAGAACATAGTACCCTAT+TGG + chr6.3:4337647-4337666 None:intergenic 35.0%
GATTGTGTCTAAAAATGAGG+TGG - chr6.3:4337675-4337694 MS.gene20604:CDS 35.0%
GTCTAAAAATGAGGTGGTAA+AGG - chr6.3:4337681-4337700 MS.gene20604:CDS 35.0%
TCAAATCCTCCATTCTCAAA+TGG - chr6.3:4337134-4337153 MS.gene20604:CDS 35.0%
TGTCTTTAGTGAGGAGTAAT+CGG - chr6.3:4337977-4337996 MS.gene20604:CDS 35.0%
TGTGGAAATGTTGCAAAAGA+TGG - chr6.3:4338275-4338294 MS.gene20604:CDS 35.0%
TGTTTGGATCCATTTGAGAA+TGG + chr6.3:4337146-4337165 None:intergenic 35.0%
TTCATGTGCGATGTTTAGTT+TGG - chr6.3:4337834-4337853 MS.gene20604:CDS 35.0%
! AAGACATTAGTTTGAGTACG+AGG + chr6.3:4337276-4337295 None:intergenic 35.0%
! AGTTGAGATTTTTACAGGCT+TGG + chr6.3:4337051-4337070 None:intergenic 35.0%
! ATGTTGGGTAATTTAGGGTT+TGG - chr6.3:4338081-4338100 MS.gene20604:CDS 35.0%
! GAGGATTTGAGGTTAAGATT+TGG + chr6.3:4337124-4337143 None:intergenic 35.0%
! GTTTTGTATGCATTGAGTCA+TGG - chr6.3:4338213-4338232 MS.gene20604:CDS 35.0%
! TGTCGTTTCTGTTTGATACT+AGG + chr6.3:4337327-4337346 None:intergenic 35.0%
!! AAAACTGCGATTGGTGTTTT+AGG - chr6.3:4337874-4337893 MS.gene20604:CDS 35.0%
!! AGTTGTGGTTAGATTTTGGT+TGG + chr6.3:4337197-4337216 None:intergenic 35.0%
!! TAACAGAAACTTTGAAGCTG+TGG + chr6.3:4337463-4337482 None:intergenic 35.0%
!!! TGGTTAGATTTTGGTTGGTT+TGG + chr6.3:4337192-4337211 None:intergenic 35.0%
!!! TTGATCGAGATTTTGAGGTT+TGG - chr6.3:4337787-4337806 MS.gene20604:CDS 35.0%
ACATGAGAGAACCAGAAATG+GGG + chr6.3:4336979-4336998 None:intergenic 40.0%
AGAAGGCTAATGAAAAGGTG+AGG - chr6.3:4338313-4338332 MS.gene20604:CDS 40.0%
AGACATGAGAGAACCAGAAA+TGG + chr6.3:4336981-4337000 None:intergenic 40.0%
ATGGATTTATTGTGTGGGAC+CGG - chr6.3:4338153-4338172 MS.gene20604:CDS 40.0%
ATGGGGCATAGAAATTCTTG+AGG + chr6.3:4336962-4336981 None:intergenic 40.0%
CTCAAAATCTCGATCAATGG+TGG + chr6.3:4337784-4337803 None:intergenic 40.0%
GAATTTCTATGCCCCATTTC+TGG - chr6.3:4336965-4336984 MS.gene20604:CDS 40.0%
GACATGAGAGAACCAGAAAT+GGG + chr6.3:4336980-4336999 None:intergenic 40.0%
GAGTTCAACTTTGCACCAAT+AGG - chr6.3:4337629-4337648 MS.gene20604:CDS 40.0%
GGCATAGAAATTCTTGAGGT+GGG + chr6.3:4336958-4336977 None:intergenic 40.0%
GTCTTTAGTGAGGAGTAATC+GGG - chr6.3:4337978-4337997 MS.gene20604:CDS 40.0%
TAAGGTTGTGAAATTTGGGG+TGG + chr6.3:4337098-4337117 None:intergenic 40.0%
TGAAAAGGTGAGGAGGATAT+TGG - chr6.3:4338323-4338342 MS.gene20604:CDS 40.0%
TTGGATCCATTTGAGAATGG+AGG + chr6.3:4337143-4337162 None:intergenic 40.0%
TTGTATGCATTGAGTCATGG+CGG - chr6.3:4338216-4338235 MS.gene20604:CDS 40.0%
TTTGCTTCACGCGCTTAAAT+CGG - chr6.3:4337909-4337928 MS.gene20604:CDS 40.0%
TTTGTTGGGGATGGTTAAGT+CGG - chr6.3:4338032-4338051 MS.gene20604:CDS 40.0%
! AATTTAGGGTTTGGATCGGA+TGG - chr6.3:4338090-4338109 MS.gene20604:CDS 40.0%
! ACTATGAGTCGACTTAACAG+TGG - chr6.3:4338423-4338442 MS.gene20604:CDS 40.0%
! ATTTTTACAGGCTTGGACTG+AGG + chr6.3:4337044-4337063 None:intergenic 40.0%
! CACCATTGATCGAGATTTTG+AGG - chr6.3:4337782-4337801 MS.gene20604:CDS 40.0%
! CTTGAGTACGAGGTTTTTCT+TGG + chr6.3:4337385-4337404 None:intergenic 40.0%
! GAAATTCTTGAGGTGGGTTT+AGG + chr6.3:4336952-4336971 None:intergenic 40.0%
! GGGTAATTTAGGGTTTGGAT+CGG - chr6.3:4338086-4338105 MS.gene20604:CDS 40.0%
! GGTTAAGCTAGGGTTTGTTT+CGG - chr6.3:4338008-4338027 MS.gene20604:CDS 40.0%
! GGTTCAAGTTCAGATGAAGA+AGG + chr6.3:4337493-4337512 None:intergenic 40.0%
!! AGGGTTTGTTTCGGTTTTGT+TGG - chr6.3:4338017-4338036 MS.gene20604:CDS 40.0%
!! TCTTCTTCTGGTGTTGTTGA+AGG + chr6.3:4337514-4337533 None:intergenic 40.0%
!! TTGAGGTGGGTTTAGGTTTT+GGG + chr6.3:4336945-4336964 None:intergenic 40.0%
!!! GGGTTTGTTTCGGTTTTGTT+GGG - chr6.3:4338018-4338037 MS.gene20604:CDS 40.0%
!!! GGTTGGTTTGGATTTTGGTT+TGG + chr6.3:4337180-4337199 None:intergenic 40.0%
!!! GGTTTGTTTCGGTTTTGTTG+GGG - chr6.3:4338019-4338038 MS.gene20604:CDS 40.0%
AAAGGTGAGGAGGATATTGG+AGG - chr6.3:4338326-4338345 MS.gene20604:CDS 45.0%
AAAGTGAAGATAGTCCGGTC+AGG - chr6.3:4337751-4337770 MS.gene20604:CDS 45.0%
AGAAAAAGAGGTGGAAGAGG+AGG - chr6.3:4338356-4338375 MS.gene20604:CDS 45.0%
AGGCTAATGAAAAGGTGAGG+AGG - chr6.3:4338316-4338335 MS.gene20604:CDS 45.0%
GAGCGAGAAGGCTAATGAAA+AGG - chr6.3:4338308-4338327 MS.gene20604:CDS 45.0%
GATCCTGTAATTGTCTCCTC+TGG - chr6.3:4337001-4337020 MS.gene20604:CDS 45.0%
GATTTAAGCGCGTGAAGCAA+AGG + chr6.3:4337910-4337929 None:intergenic 45.0%
GGACGGGTCAAGTGTTAAAT+CGG - chr6.3:4338449-4338468 MS.gene20604:CDS 45.0%
GGAGAAAATGAAGAGCGAGA+AGG - chr6.3:4338296-4338315 MS.gene20604:CDS 45.0%
GGGCATAGAAATTCTTGAGG+TGG + chr6.3:4336959-4336978 None:intergenic 45.0%
GGGCTAAGATGGTTAAGCTA+GGG - chr6.3:4337998-4338017 MS.gene20604:CDS 45.0%
GGTCAATGCACTTGCTTCAT+TGG - chr6.3:4337702-4337721 MS.gene20604:CDS 45.0%
GGTTAAGTCGGGTCATATGA+TGG - chr6.3:4338044-4338063 MS.gene20604:CDS 45.0%
TGGATTTATTGTGTGGGACC+GGG - chr6.3:4338154-4338173 MS.gene20604:CDS 45.0%
TGTATGCATTGAGTCATGGC+GGG - chr6.3:4338217-4338236 MS.gene20604:CDS 45.0%
TTGCTTGATTCAGGGTTCAG+TGG - chr6.3:4338396-4338415 MS.gene20604:CDS 45.0%
TTGTTGGGGATGGTTAAGTC+GGG - chr6.3:4338033-4338052 MS.gene20604:CDS 45.0%
! AAAGTGCCAAACCTGAGTCA+TGG + chr6.3:4337951-4337970 None:intergenic 45.0%
! ATGGTGGAACAATTCCTGAC+CGG + chr6.3:4337768-4337787 None:intergenic 45.0%
! GAGTACGAGGTTTTCAGTTG+TGG + chr6.3:4337212-4337231 None:intergenic 45.0%
! GAGTCGACTTAACAGTGGAT+TGG - chr6.3:4338428-4338447 MS.gene20604:CDS 45.0%
!! CAGAAACTTTGAAGCTGTGG+TGG + chr6.3:4337460-4337479 None:intergenic 45.0%
!! CGACTTAACAGTGGATTGGA+CGG - chr6.3:4338432-4338451 MS.gene20604:CDS 45.0%
!! CTTGAGGTGGGTTTAGGTTT+TGG + chr6.3:4336946-4336965 None:intergenic 45.0%
!! GACTTAACAGTGGATTGGAC+GGG - chr6.3:4338433-4338452 MS.gene20604:CDS 45.0%
!! TATGTTGGATGTCGGTGTTG+TGG - chr6.3:4338122-4338141 MS.gene20604:CDS 45.0%
!!! TGTTTCGGTTTTGTTGGGGA+TGG - chr6.3:4338023-4338042 MS.gene20604:CDS 45.0%
AACCCCAACACAACTCTCTC+TGG + chr6.3:4338196-4338215 None:intergenic 50.0%
AACCTCGTACTCAAGCTCAG+AGG - chr6.3:4337390-4337409 MS.gene20604:CDS 50.0%
CGACCAGAGAGAGTTGTGTT+GGG - chr6.3:4338190-4338209 MS.gene20604:CDS 50.0%
CGGGCTAAGATGGTTAAGCT+AGG - chr6.3:4337997-4338016 MS.gene20604:CDS 50.0%
GACCAGAGAGAGTTGTGTTG+GGG - chr6.3:4338191-4338210 MS.gene20604:CDS 50.0%
GAGGAGTAATCGGGCTAAGA+TGG - chr6.3:4337987-4338006 MS.gene20604:CDS 50.0%
GCGAGAAAAAGAGGTGGAAG+AGG - chr6.3:4338353-4338372 MS.gene20604:CDS 50.0%
GGAGGTGATGCGAGAAAAAG+AGG - chr6.3:4338344-4338363 MS.gene20604:CDS 50.0%
GGGAGGAGTTGCTTGATTCA+GGG - chr6.3:4338388-4338407 MS.gene20604:CDS 50.0%
GGTGATGCGAGAAAAAGAGG+TGG - chr6.3:4338347-4338366 MS.gene20604:CDS 50.0%
GTTTGGATCGTGTGAATCGC+AGG - chr6.3:4337804-4337823 MS.gene20604:CDS 50.0%
TACAGGCTTGGACTGAGGTT+CGG + chr6.3:4337039-4337058 None:intergenic 50.0%
TAGGGTTTGGATCGGATGGT+CGG - chr6.3:4338094-4338113 MS.gene20604:CDS 50.0%
TCGACCAGAGAGAGTTGTGT+TGG - chr6.3:4338189-4338208 MS.gene20604:CDS 50.0%
TGGAAGAGGAGGAAGTGGAT+TGG - chr6.3:4338367-4338386 MS.gene20604:CDS 50.0%
TGGCCAGAGGAGACAATTAC+AGG + chr6.3:4337007-4337026 None:intergenic 50.0%
TGGGAGGAGTTGCTTGATTC+AGG - chr6.3:4338387-4338406 MS.gene20604:CDS 50.0%
TTCCTCTGAGCTTGAGTACG+AGG + chr6.3:4337395-4337414 None:intergenic 50.0%
TTTATTGTGTGGGACCGGGT+TGG - chr6.3:4338158-4338177 MS.gene20604:CDS 50.0%
! CTGAGGTTCGGTCAAAGGAA+TGG + chr6.3:4337027-4337046 None:intergenic 50.0%
! GGAAGAGGAGGAAGTGGATT+GGG - chr6.3:4338368-4338387 MS.gene20604:CDS 50.0%
! TTGGACTGAGGTTCGGTCAA+AGG + chr6.3:4337032-4337051 None:intergenic 50.0%
!! CGGTGTTGTGGAGTGTTTGA+TGG - chr6.3:4338134-4338153 MS.gene20604:CDS 50.0%
!! TATACCCCCCAACTTGCTGA+TGG - chr6.3:4337070-4337089 MS.gene20604:CDS 50.0%
!! TCATGGCGGGTTGAGGTTTA+AGG - chr6.3:4338230-4338249 MS.gene20604:CDS 50.0%
AGAGGTGGAAGAGGAGGAAG+TGG - chr6.3:4338362-4338381 MS.gene20604:CDS 55.0%
AGGGTTTGGATCGGATGGTC+GGG - chr6.3:4338095-4338114 MS.gene20604:CDS 55.0%
CGGGCTGCTATGTTGGATGT+CGG - chr6.3:4338114-4338133 MS.gene20604:CDS 55.0%
GAAAAGACGCGCCATGACTC+AGG - chr6.3:4337937-4337956 MS.gene20604:CDS 55.0%
TCGGTCAAAGGAATGGCCAG+AGG + chr6.3:4337020-4337039 None:intergenic 55.0%
!! AGAGGAGGAAGTGGATTGGG+AGG - chr6.3:4338371-4338390 MS.gene20604:CDS 55.0%
!! CATTGAGTCATGGCGGGTTG+AGG - chr6.3:4338223-4338242 MS.gene20604:CDS 55.0%
!! GGTGGTGCCATCAGCAAGTT+GGG + chr6.3:4337080-4337099 None:intergenic 55.0%
!! GTGGTGCCATCAGCAAGTTG+GGG + chr6.3:4337079-4337098 None:intergenic 55.0%
!! TGGCGGGTTGAGGTTTAAGG+CGG - chr6.3:4338233-4338252 MS.gene20604:CDS 55.0%
!! TGGTGCCATCAGCAAGTTGG+GGG + chr6.3:4337078-4337097 None:intergenic 55.0%
GACGCGCCATGACTCAGGTT+TGG - chr6.3:4337942-4337961 MS.gene20604:CDS 60.0%
GGATGGTCGGGCTGCTATGT+TGG - chr6.3:4338107-4338126 MS.gene20604:CDS 60.0%
GGCGAAGGAGGTTGGAGTTG+TGG - chr6.3:4338257-4338276 MS.gene20604:CDS 60.0%
! CGGGTTGAGGTTTAAGGCGG+TGG - chr6.3:4338236-4338255 MS.gene20604:CDS 60.0%
! GAGGTTTAAGGCGGTGGCGA+AGG - chr6.3:4338242-4338261 MS.gene20604:CDS 60.0%
! GGTCGACTCAGACTCCAACC+CGG + chr6.3:4338175-4338194 None:intergenic 60.0%
! GGTGCCATCAGCAAGTTGGG+GGG + chr6.3:4337077-4337096 None:intergenic 60.0%
! GTTTAAGGCGGTGGCGAAGG+AGG - chr6.3:4338245-4338264 MS.gene20604:CDS 60.0%
!! GGGTGGTGCCATCAGCAAGT+TGG + chr6.3:4337081-4337100 None:intergenic 60.0%
AAGGCGGTGGCGAAGGAGGT+TGG - chr6.3:4338249-4338268 MS.gene20604:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 4336896 4338482 4336896 ID=MS.gene20604
chr6.3 mRNA 4336896 4338482 4336896 ID=MS.gene20604.t1;Parent=MS.gene20604
chr6.3 exon 4336896 4338482 4336896 ID=MS.gene20604.t1.exon1;Parent=MS.gene20604.t1
chr6.3 CDS 4336896 4338482 4336896 ID=cds.MS.gene20604.t1;Parent=MS.gene20604.t1
Gene Sequence

>MS.gene20604

ATGAAGTGGAAGAAAATGATGATTTTCTTCAACACAACAAAAACTACCCAAAACCTAAACCCACCTCAAGAATTTCTATGCCCCATTTCTGGTTCTCTCATGTCTGATCCTGTAATTGTCTCCTCTGGCCATTCCTTTGACCGAACCTCAGTCCAAGCCTGTAAAAATCTCAACTATACCCCCCAACTTGCTGATGGCACCACCCCAAATTTCACAACCTTAATACCAAATCTTAACCTCAAATCCTCCATTCTCAAATGGATCCAAACACAAACCAAATTCCAAACCAAAATCCAAACCAACCAAAATCTAACCACAACTGAAAACCTCGTACTCAAACTTATGTCTTCAAAACAACATGAACAGAATCAAAACAACCTCGTACTCAAACTAATGTCTTCAAAACAACATCAACATAATCAAAACAACCTAGTATCAAACAGAAACGACAAAGAAGAAGAAACACGATCACTATCAATGTTAACACCAAGAAAAACCTCGTACTCAAGCTCAGAGGAATCTATAGCTACTGTCACGTCATCATCATCAACAAGAACAACACCACCACAGCTTCAAAGTTTCTGTTACTCTTCACCTTCTTCATCTGAACTTGAACCTTCAACAACACCAGAAGAAGAAGAAATAGTAACAAAGCTCAGAAACCATGAATTGGTTATAGTAGAAGAAGGTTTAATCTCACTCAGAAAAATCACAAGAACGAATTTGGAAAGTAGAGTTCAACTTTGCACCAATAGGGTACTATGTTCTTTGCGTTATTTGATTGTGTCTAAAAATGAGGTGGTAAAGGTCAATGCACTTGCTTCATTGGTCAACCTTTCACTTGAGAAAGTTAACAAAGTGAAGATAGTCCGGTCAGGAATTGTTCCACCATTGATCGAGATTTTGAGGTTTGGATCGTGTGAATCGCAGGAACATGCTTCATGTGCGATGTTTAGTTTGGCGCTTGATGATGATAATAAAACTGCGATTGGTGTTTTAGGTGCTCTTTTGCCTTTGCTTCACGCGCTTAAATCGGAAAGTGAAAAGACGCGCCATGACTCAGGTTTGGCACTTTGTCATTTGTCTTTAGTGAGGAGTAATCGGGCTAAGATGGTTAAGCTAGGGTTTGTTTCGGTTTTGTTGGGGATGGTTAAGTCGGGTCATATGATGGATCAAGTTTTGTTAATGTTGGGTAATTTAGGGTTTGGATCGGATGGTCGGGCTGCTATGTTGGATGTCGGTGTTGTGGAGTGTTTGATGGATTTATTGTGTGGGACCGGGTTGGAGTCTGAGTCGACCAGAGAGAGTTGTGTTGGGGTTTTGTATGCATTGAGTCATGGCGGGTTGAGGTTTAAGGCGGTGGCGAAGGAGGTTGGAGTTGTGGAAATGTTGCAAAAGATGGAGAAAATGAAGAGCGAGAAGGCTAATGAAAAGGTGAGGAGGATATTGGAGGTGATGCGAGAAAAAGAGGTGGAAGAGGAGGAAGTGGATTGGGAGGAGTTGCTTGATTCAGGGTTCAGTGGTCGAACTATGAGTCGACTTAACAGTGGATTGGACGGGTCAAGTGTTAAATCGGATGAGCTGTGA
Protein sequence

>MS.gene20604.t1

MKWKKMMIFFNTTKTTQNLNPPQEFLCPISGSLMSDPVIVSSGHSFDRTSVQACKNLNYTPQLADGTTPNFTTLIPNLNLKSSILKWIQTQTKFQTKIQTNQNLTTTENLVLKLMSSKQHEQNQNNLVLKLMSSKQHQHNQNNLVSNRNDKEEETRSLSMLTPRKTSYSSSEESIATVTSSSSTRTTPPQLQSFCYSSPSSSELEPSTTPEEEEIVTKLRNHELVIVEEGLISLRKITRTNLESRVQLCTNRVLCSLRYLIVSKNEVVKVNALASLVNLSLEKVNKVKIVRSGIVPPLIEILRFGSCESQEHASCAMFSLALDDDNKTAIGVLGALLPLLHALKSESEKTRHDSGLALCHLSLVRSNRAKMVKLGFVSVLLGMVKSGHMMDQVLLMLGNLGFGSDGRAAMLDVGVVECLMDLLCGTGLESESTRESCVGVLYALSHGGLRFKAVAKEVGVVEMLQKMEKMKSEKANEKVRRILEVMREKEVEEEEVDWEELLDSGFSGRTMSRLNSGLDGSSVKSDEL