Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20611.t1 | XP_013450870.1 | 72.3 | 249 | 15 | 3 | 1 | 200 | 5 | 248 | 6.80E-13 | 84.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20611.t1 | I3T630 | 72.3 | 249 | 15 | 3 | 1 | 200 | 5 | 248 | 4.9e-13 | 84.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049660 | MS.gene20611 | 0.824046 | 9.98E-54 | -1.69E-46 |
| MS.gene05054 | MS.gene20611 | 0.832035 | 1.19E-55 | -1.69E-46 |
| MS.gene052383 | MS.gene20611 | 0.820869 | 5.46E-53 | -1.69E-46 |
| MS.gene054999 | MS.gene20611 | 0.814323 | 1.63E-51 | -1.69E-46 |
| MS.gene056526 | MS.gene20611 | 0.824298 | 8.71E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20611.t1 | MTR_6g007897 | 77.917 | 240 | 4 | 2 | 10 | 200 | 9 | 248 | 1.71e-106 | 306 |
| MS.gene20611.t1 | MTR_6g007917 | 35.784 | 204 | 81 | 8 | 1 | 200 | 1 | 158 | 3.31e-20 | 83.2 |
| MS.gene20611.t1 | MTR_8g062800 | 51.064 | 47 | 20 | 1 | 157 | 200 | 66 | 112 | 1.98e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 61 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTCCATGATTTGACTAT+TGG | 0.215760 | 6.3:-4266419 | None:intergenic |
| ATCACCTCCTTCTCCTCCTT+TGG | 0.313521 | 6.3:+4266265 | MS.gene20611:CDS |
| ACAATAGGTGGTGATTGATA+TGG | 0.386150 | 6.3:-4266194 | None:intergenic |
| TGTGTCCCTCCAGGAACTTA+TGG | 0.404918 | 6.3:+4266958 | MS.gene20611:intron |
| GGTGTTGGTGTTGCCTTCAC+TGG | 0.411020 | 6.3:-4266074 | None:intergenic |
| ACTATTGGTGGTGATTGATA+AGG | 0.424720 | 6.3:-4266362 | None:intergenic |
| GTTGGTGGTGCCTTCACTAT+AGG | 0.433989 | 6.3:-4266314 | None:intergenic |
| TGGCAAGTGTTACACTGATA+TGG | 0.441521 | 6.3:+4266996 | MS.gene20611:CDS |
| TAAGGTGGTGATTTAACTAA+AGG | 0.446310 | 6.3:-4266098 | None:intergenic |
| GAAGGAGGTGATTTCACAAT+AGG | 0.447190 | 6.3:-4266149 | None:intergenic |
| GAAGGAGGTGATTTCACAAT+AGG | 0.449629 | 6.3:-4266254 | None:intergenic |
| GGAGAAGGTGGTGTTACTAT+AGG | 0.467704 | 6.3:-4266053 | None:intergenic |
| ACTATAGGTGGAGGAGTTGG+TGG | 0.476412 | 6.3:-4266329 | None:intergenic |
| TTCACTATAGGTGGAGGAGT+TGG | 0.477408 | 6.3:-4266332 | None:intergenic |
| GGAGAAGGTGCCTTTACAAT+AGG | 0.477945 | 6.3:-4266209 | None:intergenic |
| CTACTCCAATAGTCAAATCA+TGG | 0.478634 | 6.3:+4266414 | MS.gene20611:CDS |
| ATCACCTCCTTCACCACCAT+TGG | 0.482927 | 6.3:+4266160 | MS.gene20611:CDS |
| ATAGGTGGTGTTGGTTTCAC+TGG | 0.498511 | 6.3:-4266131 | None:intergenic |
| GGTGGTGGAGATGGAGCAAC+TGG | 0.499198 | 6.3:-4266392 | None:intergenic |
| ACTATAGGTGGTGATTGATA+AGG | 0.503850 | 6.3:-4266299 | None:intergenic |
| GATTTCACAATAGGTGGTGT+TGG | 0.507384 | 6.3:-4266140 | None:intergenic |
| GATTTCACAATAGGTGGTGT+TGG | 0.507384 | 6.3:-4266245 | None:intergenic |
| TTCACTGGTGGTGATTGATA+AGG | 0.508150 | 6.3:-4266116 | None:intergenic |
| TGATGAAGATCTCAAGATAG+TGG | 0.509151 | 6.3:+4265261 | MS.gene20611:CDS |
| ATAGGACTTGGTGGAGCTGT+AGG | 0.510347 | 6.3:-4266035 | None:intergenic |
| TAATGTATCTATGGACACTT+AGG | 0.518660 | 6.3:-4267036 | None:intergenic |
| CATGATTTGACTATTGGAGT+AGG | 0.520632 | 6.3:-4266413 | None:intergenic |
| GATTTAACTAAAGGTGGTGT+TGG | 0.520898 | 6.3:-4266089 | None:intergenic |
| TTGACTATTGGAGTAGGTGG+TGG | 0.529784 | 6.3:-4266407 | None:intergenic |
| GGTGTTGCCTTCACTGGAGA+AGG | 0.534670 | 6.3:-4266068 | None:intergenic |
| TCCAATAGTCAAATCATGGA+AGG | 0.539250 | 6.3:+4266418 | MS.gene20611:CDS |
| ATTGGAGTAGGTGGTGGAGA+TGG | 0.542148 | 6.3:-4266401 | None:intergenic |
| TCAATCACCACCTATTGTAA+AGG | 0.543871 | 6.3:+4266199 | MS.gene20611:CDS |
| TAGGACTTGGTGGAGCTGTA+GGG | 0.552061 | 6.3:-4266034 | None:intergenic |
| GGTGTTACTATAGGACTTGG+TGG | 0.562271 | 6.3:-4266044 | None:intergenic |
| GGTGGTGATTTAACTAAAGG+TGG | 0.563616 | 6.3:-4266095 | None:intergenic |
| GGTGGTGTTACTATAGGACT+TGG | 0.566564 | 6.3:-4266047 | None:intergenic |
| GAAGGTGCCTTTACAATAGG+TGG | 0.569135 | 6.3:-4266206 | None:intergenic |
| GGTGGTGTTGGTTTCACTAG+AGG | 0.574102 | 6.3:-4266233 | None:intergenic |
| CCAATAGTCAAATCATGGAA+GGG | 0.585464 | 6.3:+4266419 | MS.gene20611:CDS |
| GGTTTCACTAGAGGAGGAGA+AGG | 0.586785 | 6.3:-4266224 | None:intergenic |
| TTCACCAAAGGAGGAGAAGG+AGG | 0.588422 | 6.3:-4266269 | None:intergenic |
| AACACCACCTTCTCCAGTGA+AGG | 0.591450 | 6.3:+4266061 | MS.gene20611:CDS |
| GGTGTTGGTTTCACTAGAGG+AGG | 0.593802 | 6.3:-4266230 | None:intergenic |
| GATTTCACCAATGGTGGTGA+AGG | 0.594431 | 6.3:-4266167 | None:intergenic |
| GGTGGTGTTGGTTTCACTGG+TGG | 0.594612 | 6.3:-4266128 | None:intergenic |
| GGAGGTGATTTCACAATAGG+TGG | 0.599121 | 6.3:-4266146 | None:intergenic |
| GGAGGTGATTTCACAATAGG+TGG | 0.599121 | 6.3:-4266251 | None:intergenic |
| TATGGTGGTGATTTCACCAA+TGG | 0.601372 | 6.3:-4266176 | None:intergenic |
| GTTGCCTTCACTGGAGAAGG+TGG | 0.613697 | 6.3:-4266065 | None:intergenic |
| ATTGGTGGTGATTGATAAGG+AGG | 0.614855 | 6.3:-4266359 | None:intergenic |
| TCAATCACCACCTATAGTGA+AGG | 0.619479 | 6.3:+4266304 | MS.gene20611:CDS |
| ATAGGTGGTGATTGATATGG+TGG | 0.620609 | 6.3:-4266191 | None:intergenic |
| ACTGGTGGTGATTGATAAGG+TGG | 0.624494 | 6.3:-4266113 | None:intergenic |
| TACACTGATATGGTGACTCA+TGG | 0.628922 | 6.3:+4267006 | MS.gene20611:CDS |
| TTCACCAATGGTGGTGAAGG+AGG | 0.636204 | 6.3:-4266164 | None:intergenic |
| GGTGGTGCCTTCACTATAGG+TGG | 0.638916 | 6.3:-4266311 | None:intergenic |
| GATTTGACTATTGGAGTAGG+TGG | 0.657281 | 6.3:-4266410 | None:intergenic |
| GGTGGAGATGGAGCAACTGG+TGG | 0.657637 | 6.3:-4266389 | None:intergenic |
| ATAGGTGGTGATTGATAAGG+TGG | 0.660552 | 6.3:-4266296 | None:intergenic |
| GGTGGTGATTTCACCAATGG+TGG | 0.693978 | 6.3:-4266173 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATAAAAATTAGAAGTA+TGG | - | chr6.3:4265649-4265668 | None:intergenic | 10.0% |
| !! | AAAATTAGTAATGTGATATT+TGG | + | chr6.3:4265992-4266011 | MS.gene20611:intron | 15.0% |
| !! | AAGTAGTGATTAATTAATAT+TGG | + | chr6.3:4266785-4266804 | MS.gene20611:intron | 15.0% |
| !! | ATAAATTCACATATATATTG+TGG | + | chr6.3:4266747-4266766 | MS.gene20611:intron | 15.0% |
| !! | CAAAAATATGATTATATGTT+TGG | + | chr6.3:4266580-4266599 | MS.gene20611:intron | 15.0% |
| !! | TAAATCAAGAAGAAAAAAAT+TGG | - | chr6.3:4265170-4265189 | None:intergenic | 15.0% |
| !!! | TATTTCTACTAAAATTTTAG+AGG | - | chr6.3:4266552-4266571 | None:intergenic | 15.0% |
| !!! | TTAGAACTGTTTTTTAATAA+AGG | - | chr6.3:4265489-4265508 | None:intergenic | 15.0% |
| !! | AAAAATGCTTAGAAGAAAAA+TGG | - | chr6.3:4264994-4265013 | None:intergenic | 20.0% |
| !! | AACATATTTATCTACTTAGA+AGG | + | chr6.3:4265086-4265105 | MS.gene20611:intron | 20.0% |
| !! | ACATATTAAAGACATAGAAA+TGG | - | chr6.3:4266456-4266475 | None:intergenic | 20.0% |
| !! | GAATCAAACAAAAATAGAAA+GGG | - | chr6.3:4265314-4265333 | None:intergenic | 20.0% |
| !! | TATAATATATCTTTATGTGC+AGG | + | chr6.3:4265228-4265247 | MS.gene20611:intron | 20.0% |
| !! | TTGACAAAATTATCGTAATA+TGG | - | chr6.3:4265764-4265783 | None:intergenic | 20.0% |
| !!! | AAAAATGAGCAAAAAAGTTT+TGG | - | chr6.3:4266607-4266626 | None:intergenic | 20.0% |
| !!! | AAAATGAGCAAAAAAGTTTT+GGG | - | chr6.3:4266606-4266625 | None:intergenic | 20.0% |
| !!! | AAACCTGTATTTTTATTTTG+TGG | + | chr6.3:4266839-4266858 | MS.gene20611:intron | 20.0% |
| !!! | AAACTTTTTTGCTCATTTTT+TGG | + | chr6.3:4266607-4266626 | MS.gene20611:intron | 20.0% |
| !!! | AACCTGTATTTTTATTTTGT+GGG | + | chr6.3:4266840-4266859 | MS.gene20611:intron | 20.0% |
| !!! | ATAAAAATTAGAAGTATGGT+AGG | - | chr6.3:4265645-4265664 | None:intergenic | 20.0% |
| !!! | TCTTTTCTATATCTTTTCAT+TGG | - | chr6.3:4265556-4265575 | None:intergenic | 20.0% |
| !!! | TTGTATAGTAGTTAATGTTT+TGG | - | chr6.3:4265819-4265838 | None:intergenic | 20.0% |
| ! | AGTTAGAGAAAAGAGAAATT+AGG | + | chr6.3:4265508-4265527 | MS.gene20611:intron | 25.0% |
| ! | ATATTTATCTACTTAGAAGG+TGG | + | chr6.3:4265089-4265108 | MS.gene20611:intron | 25.0% |
| ! | GGAATCAAACAAAAATAGAA+AGG | - | chr6.3:4265315-4265334 | None:intergenic | 25.0% |
| ! | TAAGAAAGAACTTTCTGATA+AGG | - | chr6.3:4265348-4265367 | None:intergenic | 25.0% |
| ! | TTCTGATAAGGATGTTTAAA+GGG | - | chr6.3:4265336-4265355 | None:intergenic | 25.0% |
| ! | TTTCTGATAAGGATGTTTAA+AGG | - | chr6.3:4265337-4265356 | None:intergenic | 25.0% |
| !! | AAATATGAAGTGTTACGTTA+TGG | - | chr6.3:4265792-4265811 | None:intergenic | 25.0% |
| !!! | AAAAATCCTTGTTTGTTATG+AGG | - | chr6.3:4265708-4265727 | None:intergenic | 25.0% |
| !!! | AAAATTTTAGAGGTGAAGTA+TGG | - | chr6.3:4266542-4266561 | None:intergenic | 25.0% |
| ACAAGTAGAGTTACTAAGTT+AGG | - | chr6.3:4266652-4266671 | None:intergenic | 30.0% | |
| GAGTGAATTTGACAAAATCA+CGG | - | chr6.3:4265918-4265937 | None:intergenic | 30.0% | |
| TAAGGTGGTGATTTAACTAA+AGG | - | chr6.3:4266101-4266120 | None:intergenic | 30.0% | |
| TATGGTAACAGAGAAAAATG+TGG | + | chr6.3:4266976-4266995 | MS.gene20611:CDS | 30.0% | |
| TGCCCACAAAATAAAAATAC+AGG | - | chr6.3:4266845-4266864 | None:intergenic | 30.0% | |
| ! | TGTTTTGCCTAGAATGTTTT+TGG | - | chr6.3:4266897-4266916 | None:intergenic | 30.0% |
| ACAATAGGTGGTGATTGATA+TGG | - | chr6.3:4266197-4266216 | None:intergenic | 35.0% | |
| ACTATAGGTGGTGATTGATA+AGG | - | chr6.3:4266302-4266321 | None:intergenic | 35.0% | |
| ATAGGTGCCAAAAACATTCT+AGG | + | chr6.3:4266887-4266906 | MS.gene20611:intron | 35.0% | |
| CATGATTTGACTATTGGAGT+AGG | - | chr6.3:4266416-4266435 | None:intergenic | 35.0% | |
| CCAATAGTCAAATCATGGAA+GGG | + | chr6.3:4266419-4266438 | MS.gene20611:CDS | 35.0% | |
| CTACTCCAATAGTCAAATCA+TGG | + | chr6.3:4266414-4266433 | MS.gene20611:CDS | 35.0% | |
| GATTTAACTAAAGGTGGTGT+TGG | - | chr6.3:4266092-4266111 | None:intergenic | 35.0% | |
| TCAATCACCACCTATTGTAA+AGG | + | chr6.3:4266199-4266218 | MS.gene20611:CDS | 35.0% | |
| TCCAATAGTCAAATCATGGA+AGG | + | chr6.3:4266418-4266437 | MS.gene20611:CDS | 35.0% | |
| TCTCGTCTATAGTAAAATCG+CGG | - | chr6.3:4265865-4265884 | None:intergenic | 35.0% | |
| TGATGAAGATCTCAAGATAG+TGG | + | chr6.3:4265261-4265280 | MS.gene20611:CDS | 35.0% | |
| TTATGAGGTTAGGGAAATGT+CGG | - | chr6.3:4265693-4265712 | None:intergenic | 35.0% | |
| TTGACAAAATCACGGTAACA+TGG | - | chr6.3:4265910-4265929 | None:intergenic | 35.0% | |
| !! | ACTATTGGTGGTGATTGATA+AGG | - | chr6.3:4266365-4266384 | None:intergenic | 35.0% |
| !! | AGTAATGTGATATTTGGTGC+AGG | + | chr6.3:4265998-4266017 | MS.gene20611:intron | 35.0% |
| !! | CCTTGTTTGTTATGAGGTTA+GGG | - | chr6.3:4265702-4265721 | None:intergenic | 35.0% |
| !! | TCCTTGTTTGTTATGAGGTT+AGG | - | chr6.3:4265703-4265722 | None:intergenic | 35.0% |
| !!! | CTCATTTTTTGGTACTAGAG+AGG | + | chr6.3:4266618-4266637 | MS.gene20611:intron | 35.0% |
| !!! | TAAGGAGGTGTTTTCACTAT+AGG | - | chr6.3:4266347-4266366 | None:intergenic | 35.0% |
| ATAGGTGGTGATTGATAAGG+TGG | - | chr6.3:4266299-4266318 | None:intergenic | 40.0% | |
| ATAGGTGGTGATTGATATGG+TGG | - | chr6.3:4266194-4266213 | None:intergenic | 40.0% | |
| CCCTAACCTCATAACAAACA+AGG | + | chr6.3:4265699-4265718 | MS.gene20611:intron | 40.0% | |
| CCCTTCCATGATTTGACTAT+TGG | - | chr6.3:4266422-4266441 | None:intergenic | 40.0% | |
| GAAGGAGGTGATTTCACAAT+AGG | - | chr6.3:4266152-4266171 | None:intergenic | 40.0% | |
| GAGTTACTAAGTTAGGCATG+TGG | - | chr6.3:4266645-4266664 | None:intergenic | 40.0% | |
| GATTTCACAATAGGTGGTGT+TGG | - | chr6.3:4266143-4266162 | None:intergenic | 40.0% | |
| GATTTGACTATTGGAGTAGG+TGG | - | chr6.3:4266413-4266432 | None:intergenic | 40.0% | |
| GCATTCCACTATGTGGTTAT+AGG | + | chr6.3:4266869-4266888 | MS.gene20611:intron | 40.0% | |
| GGTGGTGATTTAACTAAAGG+TGG | - | chr6.3:4266098-4266117 | None:intergenic | 40.0% | |
| TACACTGATATGGTGACTCA+TGG | + | chr6.3:4267006-4267025 | MS.gene20611:CDS | 40.0% | |
| TCAATCACCACCTATAGTGA+AGG | + | chr6.3:4266304-4266323 | MS.gene20611:CDS | 40.0% | |
| TCTCTGTTACCATAAGTTCC+TGG | - | chr6.3:4266970-4266989 | None:intergenic | 40.0% | |
| TGGCAAGTGTTACACTGATA+TGG | + | chr6.3:4266996-4267015 | MS.gene20611:CDS | 40.0% | |
| TGTTACCATAAGTTCCTGGA+GGG | - | chr6.3:4266966-4266985 | None:intergenic | 40.0% | |
| ! | TAAGGTGGTGTTTTCACCAA+AGG | - | chr6.3:4266284-4266303 | None:intergenic | 40.0% |
| ! | TATGGTGGTGATTTCACCAA+TGG | - | chr6.3:4266179-4266198 | None:intergenic | 40.0% |
| ! | TTCACTGGTGGTGATTGATA+AGG | - | chr6.3:4266119-4266138 | None:intergenic | 40.0% |
| !! | ACTGGTGGTTTTACTATTGG+TGG | - | chr6.3:4266377-4266396 | None:intergenic | 40.0% |
| !! | ATTGGTGGTGATTGATAAGG+AGG | - | chr6.3:4266362-4266381 | None:intergenic | 40.0% |
| !! | GCAACTGGTGGTTTTACTAT+TGG | - | chr6.3:4266380-4266399 | None:intergenic | 40.0% |
| CTGTTACCATAAGTTCCTGG+AGG | - | chr6.3:4266967-4266986 | None:intergenic | 45.0% | |
| GCAGATTGCATTCCACTATG+TGG | + | chr6.3:4266862-4266881 | MS.gene20611:intron | 45.0% | |
| GGAGGTGATTTCACAATAGG+TGG | - | chr6.3:4266149-4266168 | None:intergenic | 45.0% | |
| TGGCACCTATAACCACATAG+TGG | - | chr6.3:4266877-4266896 | None:intergenic | 45.0% | |
| TTCACTATAGGTGGAGGAGT+TGG | - | chr6.3:4266335-4266354 | None:intergenic | 45.0% | |
| TTGACTATTGGAGTAGGTGG+TGG | - | chr6.3:4266410-4266429 | None:intergenic | 45.0% | |
| ! | ACTGGTGGTGATTGATAAGG+TGG | - | chr6.3:4266116-4266135 | None:intergenic | 45.0% |
| ! | GATTTCACCAATGGTGGTGA+AGG | - | chr6.3:4266170-4266189 | None:intergenic | 45.0% |
| ! | GGTGTTTTCACTATAGGTGG+AGG | - | chr6.3:4266341-4266360 | None:intergenic | 45.0% |
| ! | GTTTTCACCAAAGGAGGAGA+AGG | - | chr6.3:4266275-4266294 | None:intergenic | 45.0% |
| ! | TTTTCTTGTGCTCGACACGA+AGG | + | chr6.3:4265025-4265044 | MS.gene20611:CDS | 45.0% |
| !! | ATAGGTGGTGTTGGTTTCAC+TGG | - | chr6.3:4266134-4266153 | None:intergenic | 45.0% |
| !! | CATGCATGACTTGTTGTGAC+CGG | + | chr6.3:4266929-4266948 | MS.gene20611:intron | 45.0% |
| !! | GAAGGTGCCTTTACAATAGG+TGG | - | chr6.3:4266209-4266228 | None:intergenic | 45.0% |
| !! | GGAGAAGGTGCCTTTACAAT+AGG | - | chr6.3:4266212-4266231 | None:intergenic | 45.0% |
| !! | GGAGAAGGTGGTGTTACTAT+AGG | - | chr6.3:4266056-4266075 | None:intergenic | 45.0% |
| !! | GGTGGTGTTACTATAGGACT+TGG | - | chr6.3:4266050-4266069 | None:intergenic | 45.0% |
| !! | GGTGTTACTATAGGACTTGG+TGG | - | chr6.3:4266047-4266066 | None:intergenic | 45.0% |
| !!! | GGAGGTGTTTTCACTATAGG+TGG | - | chr6.3:4266344-4266363 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTTTAAGAAATTT+AGG | + | chr6.3:4265724-4265743 | MS.gene20611:intron | 5.0% |
| AACACCACCTTCTCCAGTGA+AGG | + | chr6.3:4266061-4266080 | MS.gene20611:CDS | 50.0% | |
| ACTATAGGTGGAGGAGTTGG+TGG | - | chr6.3:4266332-4266351 | None:intergenic | 50.0% | |
| ATCACCTCCTTCACCACCAT+TGG | + | chr6.3:4266160-4266179 | MS.gene20611:CDS | 50.0% | |
| ATCACCTCCTTCTCCTCCTT+TGG | + | chr6.3:4266265-4266284 | MS.gene20611:CDS | 50.0% | |
| GGTGGTGATTTCACCAATGG+TGG | - | chr6.3:4266176-4266195 | None:intergenic | 50.0% | |
| GGTTTCACTAGAGGAGGAGA+AGG | - | chr6.3:4266227-4266246 | None:intergenic | 50.0% | |
| TGTGTCCCTCCAGGAACTTA+TGG | + | chr6.3:4266958-4266977 | MS.gene20611:intron | 50.0% | |
| TTCACCAAAGGAGGAGAAGG+AGG | - | chr6.3:4266272-4266291 | None:intergenic | 50.0% | |
| ! | GGTGGTGTTTTCACCAAAGG+AGG | - | chr6.3:4266281-4266300 | None:intergenic | 50.0% |
| ! | TTCACCAATGGTGGTGAAGG+AGG | - | chr6.3:4266167-4266186 | None:intergenic | 50.0% |
| !! | ATAGGACTTGGTGGAGCTGT+AGG | - | chr6.3:4266038-4266057 | None:intergenic | 50.0% |
| !! | ATTGGAGTAGGTGGTGGAGA+TGG | - | chr6.3:4266404-4266423 | None:intergenic | 50.0% |
| !! | GGTGGTGTTGGTTTCACTAG+AGG | - | chr6.3:4266236-4266255 | None:intergenic | 50.0% |
| !! | GGTGTTGGTTTCACTAGAGG+AGG | - | chr6.3:4266233-4266252 | None:intergenic | 50.0% |
| !! | GTTGGTGGTGCCTTCACTAT+AGG | - | chr6.3:4266317-4266336 | None:intergenic | 50.0% |
| !! | TAGGACTTGGTGGAGCTGTA+GGG | - | chr6.3:4266037-4266056 | None:intergenic | 50.0% |
| CTGGAGGGACACATTTGCAC+CGG | - | chr6.3:4266951-4266970 | None:intergenic | 55.0% | |
| GGTGGTGCCTTCACTATAGG+TGG | - | chr6.3:4266314-4266333 | None:intergenic | 55.0% | |
| GTTGCCTTCACTGGAGAAGG+TGG | - | chr6.3:4266068-4266087 | None:intergenic | 55.0% | |
| ! | GGTGTTGCCTTCACTGGAGA+AGG | - | chr6.3:4266071-4266090 | None:intergenic | 55.0% |
| !! | GGTGGTGTTGGTTTCACTGG+TGG | - | chr6.3:4266131-4266150 | None:intergenic | 55.0% |
| !! | GGTGTTGGTGTTGCCTTCAC+TGG | - | chr6.3:4266077-4266096 | None:intergenic | 55.0% |
| CGGTGCAAATGTGTCCCTCC+AGG | + | chr6.3:4266949-4266968 | MS.gene20611:intron | 60.0% | |
| GGTGGAGATGGAGCAACTGG+TGG | - | chr6.3:4266392-4266411 | None:intergenic | 60.0% | |
| !! | GGTGGTGGAGATGGAGCAAC+TGG | - | chr6.3:4266395-4266414 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 4264978 | 4267050 | 4264978 | ID=MS.gene20611 |
| chr6.3 | mRNA | 4264978 | 4267050 | 4264978 | ID=MS.gene20611.t1;Parent=MS.gene20611 |
| chr6.3 | exon | 4264978 | 4265046 | 4264978 | ID=MS.gene20611.t1.exon1;Parent=MS.gene20611.t1 |
| chr6.3 | CDS | 4264978 | 4265046 | 4264978 | ID=cds.MS.gene20611.t1;Parent=MS.gene20611.t1 |
| chr6.3 | exon | 4265250 | 4265282 | 4265250 | ID=MS.gene20611.t1.exon2;Parent=MS.gene20611.t1 |
| chr6.3 | CDS | 4265250 | 4265282 | 4265250 | ID=cds.MS.gene20611.t1;Parent=MS.gene20611.t1 |
| chr6.3 | exon | 4266020 | 4266440 | 4266020 | ID=MS.gene20611.t1.exon3;Parent=MS.gene20611.t1 |
| chr6.3 | CDS | 4266020 | 4266440 | 4266020 | ID=cds.MS.gene20611.t1;Parent=MS.gene20611.t1 |
| chr6.3 | exon | 4266971 | 4267050 | 4266971 | ID=MS.gene20611.t1.exon4;Parent=MS.gene20611.t1 |
| chr6.3 | CDS | 4266971 | 4267050 | 4266971 | ID=cds.MS.gene20611.t1;Parent=MS.gene20611.t1 |
| Gene Sequence |
| Protein sequence |
