Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20630.t1 | XP_013450864.1 | 98.8 | 340 | 4 | 0 | 1 | 340 | 1 | 340 | 6.90E-199 | 703 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20630.t1 | Q9LYK6 | 82.8 | 314 | 54 | 0 | 4 | 317 | 2 | 315 | 3.3e-157 | 555.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20630.t1 | A0A072U5A3 | 98.8 | 340 | 4 | 0 | 1 | 340 | 1 | 340 | 5.0e-199 | 703.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene20630 | MS.gene65922 | PPI |
| MS.gene20630 | MS.gene008950 | PPI |
| MS.gene20630 | MS.gene017957 | PPI |
| MS.gene20630 | MS.gene04593 | PPI |
| MS.gene20630 | MS.gene072377 | PPI |
| MS.gene20630 | MS.gene048383 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20630.t1 | MTR_6g007797 | 98.824 | 340 | 4 | 0 | 1 | 340 | 1 | 340 | 0.0 | 704 |
| MS.gene20630.t1 | MTR_8g068320 | 49.682 | 314 | 149 | 5 | 7 | 316 | 14 | 322 | 1.81e-109 | 322 |
| MS.gene20630.t1 | MTR_8g068320 | 49.682 | 314 | 149 | 5 | 7 | 316 | 15 | 323 | 1.91e-109 | 322 |
| MS.gene20630.t1 | MTR_1g072140 | 21.942 | 278 | 205 | 5 | 32 | 306 | 33 | 301 | 1.22e-16 | 79.7 |
| MS.gene20630.t1 | MTR_4g119620 | 21.233 | 292 | 207 | 6 | 29 | 307 | 30 | 311 | 2.64e-14 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20630.t1 | AT5G14530 | 82.803 | 314 | 54 | 0 | 4 | 317 | 2 | 315 | 0.0 | 554 |
| MS.gene20630.t1 | AT5G66240 | 49.839 | 311 | 151 | 3 | 7 | 316 | 14 | 320 | 1.61e-105 | 312 |
| MS.gene20630.t1 | AT5G66240 | 49.839 | 311 | 151 | 3 | 7 | 316 | 11 | 317 | 1.76e-105 | 312 |
| MS.gene20630.t1 | AT5G66240 | 49.518 | 311 | 150 | 4 | 7 | 316 | 11 | 315 | 1.57e-102 | 305 |
| MS.gene20630.t1 | AT5G50230 | 25.091 | 275 | 184 | 10 | 31 | 297 | 230 | 490 | 7.11e-14 | 72.8 |
| MS.gene20630.t1 | AT4G02730 | 21.318 | 258 | 184 | 6 | 25 | 275 | 42 | 287 | 1.22e-13 | 71.2 |
| MS.gene20630.t1 | AT3G49660 | 20.209 | 287 | 212 | 6 | 29 | 307 | 27 | 304 | 5.46e-12 | 66.2 |
Find 91 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCGTAAGGATGATTTAT+TGG | 0.221583 | 6.3:-4010929 | MS.gene20630:CDS |
| CCTCATCTGTTCTCACGTTT+TGG | 0.234940 | 6.3:-4010114 | MS.gene20630:CDS |
| ATGCTCTTCAAGGTACAATT+TGG | 0.267475 | 6.3:-4010779 | MS.gene20630:CDS |
| TGGGTCGGTTCACTGGAGTT+GGG | 0.318998 | 6.3:+4010021 | None:intergenic |
| TAAGCGCTGCGGATTTAGTT+TGG | 0.334470 | 6.3:-4010326 | MS.gene20630:CDS |
| GTGTGCCTTCGTGCTTGAAA+TGG | 0.336945 | 6.3:-4010165 | MS.gene20630:CDS |
| TTCAGATTCGGTTCGTTGTT+TGG | 0.346342 | 6.3:+4010088 | None:intergenic |
| GCCACTACATACTTCCCGTC+TGG | 0.359890 | 6.3:+4010265 | None:intergenic |
| TTGGGTCGGTTCACTGGAGT+TGG | 0.367113 | 6.3:+4010020 | None:intergenic |
| TTGACCACAGTGTAAGGTTA+TGG | 0.367297 | 6.3:-4010624 | MS.gene20630:CDS |
| ACCATGTTTCTTATGATAAG+TGG | 0.368405 | 6.3:+4010843 | None:intergenic |
| TATTCTTCAGCTTTCAGATT+CGG | 0.379412 | 6.3:+4010076 | None:intergenic |
| AATCTGAAAGCTGAAGAATA+TGG | 0.395521 | 6.3:-4010073 | MS.gene20630:CDS |
| AGCACGAAGGCACACCAATA+TGG | 0.408745 | 6.3:+4010173 | None:intergenic |
| CGGCAAAGACAAGGCCTTGT+TGG | 0.412654 | 6.3:+4010536 | None:intergenic |
| ATATATGTTCTTGATGCATA+TGG | 0.423567 | 6.3:-4010355 | MS.gene20630:CDS |
| GCATGTTGGAGCAGCCATAT+TGG | 0.431934 | 6.3:-4010187 | MS.gene20630:CDS |
| GATATTAAATTCAGCAATGA+TGG | 0.432124 | 6.3:-4010412 | MS.gene20630:CDS |
| TCGCTGCCTCCGATACTTCA+AGG | 0.439064 | 6.3:-4010713 | MS.gene20630:CDS |
| TGTGCCTTCGTGCTTGAAAT+GGG | 0.440341 | 6.3:-4010164 | MS.gene20630:CDS |
| TTCGATTGATTTCCATCGTA+AGG | 0.442446 | 6.3:-4010941 | MS.gene20630:CDS |
| GTTCTGTCATATGCTCTTCA+AGG | 0.445567 | 6.3:-4010789 | MS.gene20630:CDS |
| TAGTGGCAGGCTCAGGAGGC+GGG | 0.458698 | 6.3:-4010249 | MS.gene20630:CDS |
| GAAGAGCATATGACAGAACT+TGG | 0.462044 | 6.3:+4010793 | None:intergenic |
| TGACCACAGTGTAAGGTTAT+GGG | 0.462418 | 6.3:-4010623 | MS.gene20630:CDS |
| GTCTTTGCCGTAGCAATGGA+AGG | 0.466359 | 6.3:-4010523 | MS.gene20630:CDS |
| GTTTATGCCCCTTGAAGTAT+CGG | 0.468247 | 6.3:+4010704 | None:intergenic |
| CGCGTACATGTAAGATTCCC+TGG | 0.474657 | 6.3:+4010581 | None:intergenic |
| GAGGCGGGACCATGCACGCT+TGG | 0.482153 | 6.3:-4010234 | MS.gene20630:CDS |
| TCTACGTGTAAATGCATGCC+AGG | 0.490219 | 6.3:-4010599 | MS.gene20630:CDS |
| GTTCTGTTGACCACAGTGTA+AGG | 0.493412 | 6.3:-4010630 | MS.gene20630:CDS |
| ATCAATGATAGCTTCATGTC+TGG | 0.494202 | 6.3:-4010652 | MS.gene20630:CDS |
| GACATGAAGCTATCATTGAT+AGG | 0.501421 | 6.3:+4010655 | None:intergenic |
| ATTGTCCGCACCATGTCTAT+AGG | 0.503113 | 6.3:-4010997 | MS.gene20630:CDS |
| TTGGGGCTGAAGTCCTGCTT+CGG | 0.504665 | 6.3:+4010039 | None:intergenic |
| ATCTCATGGTACCTCAATAG+AGG | 0.509631 | 6.3:-4010299 | MS.gene20630:CDS |
| GACAAGGCCTTGTTGGTCAT+AGG | 0.519019 | 6.3:+4010543 | None:intergenic |
| CCACTACATACTTCCCGTCT+GGG | 0.519962 | 6.3:+4010266 | None:intergenic |
| GGGTCGGTTCACTGGAGTTG+GGG | 0.520317 | 6.3:+4010022 | None:intergenic |
| GACGGGAAGTATGTAGTGGC+AGG | 0.522246 | 6.3:-4010262 | MS.gene20630:CDS |
| GATGATTTATTGGTCACAGC+TGG | 0.522307 | 6.3:-4010919 | MS.gene20630:CDS |
| CGCTGCCTCCGATACTTCAA+GGG | 0.525526 | 6.3:-4010712 | MS.gene20630:CDS |
| GTAGTGGCAGGCTCAGGAGG+CGG | 0.527933 | 6.3:-4010250 | MS.gene20630:CDS |
| AGGTACAATTTGGAGTCTAC+CGG | 0.528433 | 6.3:-4010769 | MS.gene20630:CDS |
| AAGTATGTAGTGGCAGGCTC+AGG | 0.532223 | 6.3:-4010256 | MS.gene20630:CDS |
| CCTTGTCTTTGCCGTAGCAA+TGG | 0.536478 | 6.3:-4010527 | MS.gene20630:CDS |
| GAGGATGACAGCATCACTTA+CGG | 0.538066 | 6.3:-4011034 | None:intergenic |
| GGAGGCACAGACGCCGAAGC+AGG | 0.538395 | 6.3:-4010052 | MS.gene20630:CDS |
| TAAATACCTCAACGATTCTC+CGG | 0.546938 | 6.3:+4010750 | None:intergenic |
| TGCACGCTTGGAGTATTGAC+AGG | 0.554704 | 6.3:-4010222 | MS.gene20630:CDS |
| AGATGAGGCTGCAGCAAACA+TGG | 0.557253 | 6.3:+4010129 | None:intergenic |
| GAGGCTACATTTACCCCAGA+CGG | 0.561514 | 6.3:-4010280 | MS.gene20630:CDS |
| AGGCTGCAGCAAACATGGCA+CGG | 0.561955 | 6.3:+4010134 | None:intergenic |
| TTTAGTTTGGAACCATCTCA+TGG | 0.564025 | 6.3:-4010313 | MS.gene20630:CDS |
| TCTTTGCCGTAGCAATGGAA+GGG | 0.575146 | 6.3:-4010522 | MS.gene20630:CDS |
| TATGTAGTGGCAGGCTCAGG+AGG | 0.576632 | 6.3:-4010253 | MS.gene20630:CDS |
| CTTTGCCGTAGCAATGGAAG+GGG | 0.578605 | 6.3:-4010521 | MS.gene20630:CDS |
| GTCAATACTCCAAGCGTGCA+TGG | 0.585442 | 6.3:+4010225 | None:intergenic |
| ACCGACAAGAAAAGTGTCGA+AGG | 0.593960 | 6.3:+4010456 | None:intergenic |
| GATTCACGTTCATATGACAA+AGG | 0.595643 | 6.3:-4010481 | MS.gene20630:CDS |
| GCAGCAAACATGGCACGGCG+AGG | 0.597422 | 6.3:+4010139 | None:intergenic |
| ATATATCTTCCCAACATAGT+CGG | 0.608921 | 6.3:+4010963 | None:intergenic |
| GGTAAATGTAGCCTCTATTG+AGG | 0.612541 | 6.3:+4010288 | None:intergenic |
| TCTATTGAGGTACCATGAGA+TGG | 0.615901 | 6.3:+4010301 | None:intergenic |
| CCAATAAATCATCCTTACGA+TGG | 0.616705 | 6.3:+4010929 | None:intergenic |
| TGTCGGTGGTGATACTGCTG+AGG | 0.617340 | 6.3:-4010440 | MS.gene20630:CDS |
| AGGCTACATTTACCCCAGAC+GGG | 0.619588 | 6.3:-4010279 | MS.gene20630:CDS |
| TGTTGGTCATAGGCAACAGT+AGG | 0.620319 | 6.3:+4010553 | None:intergenic |
| GGAATCACGAGGTAGCATGT+TGG | 0.625091 | 6.3:-4010201 | MS.gene20630:CDS |
| CCATTGCTACGGCAAAGACA+AGG | 0.633354 | 6.3:+4010527 | None:intergenic |
| CCCAGACGGGAAGTATGTAG+TGG | 0.649182 | 6.3:-4010266 | MS.gene20630:CDS |
| TATGTTCTTGATGCATATGG+AGG | 0.651997 | 6.3:-4010352 | MS.gene20630:CDS |
| AAGAGCATATGACAGAACTT+GGG | 0.654133 | 6.3:+4010794 | None:intergenic |
| CGGCTCCTATAGACATGGTG+CGG | 0.655639 | 6.3:+4010992 | None:intergenic |
| TATGCCCCTTGAAGTATCGG+AGG | 0.657654 | 6.3:+4010707 | None:intergenic |
| CTGAAAGCTGAAGAATATGG+AGG | 0.664497 | 6.3:-4010070 | MS.gene20630:CDS |
| ACCACTTATCATAAGAAACA+TGG | 0.669454 | 6.3:-4010844 | MS.gene20630:CDS |
| CCAAAACGTGAGAACAGATG+AGG | 0.669797 | 6.3:+4010114 | None:intergenic |
| CTACGTGTAAATGCATGCCA+GGG | 0.671133 | 6.3:-4010598 | MS.gene20630:CDS |
| CCGACAAGAAAAGTGTCGAA+GGG | 0.674207 | 6.3:+4010457 | None:intergenic |
| CACTACATACTTCCCGTCTG+GGG | 0.675821 | 6.3:+4010267 | None:intergenic |
| CAGGGAATCTTACATGTACG+CGG | 0.690267 | 6.3:-4010580 | MS.gene20630:CDS |
| AGTCTACCGGAGAATCGTTG+AGG | 0.691573 | 6.3:-4010756 | MS.gene20630:CDS |
| GCTGCCTCCGATACTTCAAG+GGG | 0.692452 | 6.3:-4010711 | MS.gene20630:CDS |
| TTTGCCGTAGCAATGGAAGG+GGG | 0.702301 | 6.3:-4010520 | MS.gene20630:CDS |
| TTTATTGGTCACAGCTGGTG+AGG | 0.710015 | 6.3:-4010914 | MS.gene20630:CDS |
| GGAGCCCATTTCAAGCACGA+AGG | 0.715583 | 6.3:+4010160 | None:intergenic |
| GAGTATTGACAGGAATCACG+AGG | 0.726880 | 6.3:-4010212 | MS.gene20630:CDS |
| ACTGTTGCCTATGACCAACA+AGG | 0.730445 | 6.3:-4010550 | MS.gene20630:CDS |
| TATGGAGGAGATAAGCGCTG+CGG | 0.743293 | 6.3:-4010337 | MS.gene20630:CDS |
| GATCCCATAACCTTACACTG+TGG | 0.791126 | 6.3:+4010620 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATATATGTTCTTGATGCATA+TGG | - | chr6.3:4010705-4010724 | MS.gene20630:CDS | 25.0% |
| ! | GATATTAAATTCAGCAATGA+TGG | - | chr6.3:4010648-4010667 | MS.gene20630:CDS | 25.0% |
| AATCTGAAAGCTGAAGAATA+TGG | - | chr6.3:4010987-4011006 | MS.gene20630:CDS | 30.0% | |
| ACCACTTATCATAAGAAACA+TGG | - | chr6.3:4010216-4010235 | MS.gene20630:CDS | 30.0% | |
| ACCATGTTTCTTATGATAAG+TGG | + | chr6.3:4010220-4010239 | None:intergenic | 30.0% | |
| ATATATCTTCCCAACATAGT+CGG | + | chr6.3:4010100-4010119 | None:intergenic | 30.0% | |
| TATTCTTCAGCTTTCAGATT+CGG | + | chr6.3:4010987-4011006 | None:intergenic | 30.0% | |
| ATCAATGATAGCTTCATGTC+TGG | - | chr6.3:4010408-4010427 | MS.gene20630:CDS | 35.0% | |
| ATGCTCTTCAAGGTACAATT+TGG | - | chr6.3:4010281-4010300 | MS.gene20630:CDS | 35.0% | |
| CCAATAAATCATCCTTACGA+TGG | + | chr6.3:4010134-4010153 | None:intergenic | 35.0% | |
| CCATCGTAAGGATGATTTAT+TGG | - | chr6.3:4010131-4010150 | MS.gene20630:CDS | 35.0% | |
| GACATGAAGCTATCATTGAT+AGG | + | chr6.3:4010408-4010427 | None:intergenic | 35.0% | |
| GATTCACGTTCATATGACAA+AGG | - | chr6.3:4010579-4010598 | MS.gene20630:CDS | 35.0% | |
| TAAATACCTCAACGATTCTC+CGG | + | chr6.3:4010313-4010332 | None:intergenic | 35.0% | |
| TATGTTCTTGATGCATATGG+AGG | - | chr6.3:4010708-4010727 | MS.gene20630:CDS | 35.0% | |
| ! | AAGAGCATATGACAGAACTT+GGG | + | chr6.3:4010269-4010288 | None:intergenic | 35.0% |
| ! | TTCGATTGATTTCCATCGTA+AGG | - | chr6.3:4010119-4010138 | MS.gene20630:CDS | 35.0% |
| !! | TTTAGTTTGGAACCATCTCA+TGG | - | chr6.3:4010747-4010766 | MS.gene20630:CDS | 35.0% |
| AAAAACGGCTCCTATAGACA+TGG | + | chr6.3:4010076-4010095 | None:intergenic | 40.0% | |
| ATCTCATGGTACCTCAATAG+AGG | - | chr6.3:4010761-4010780 | MS.gene20630:CDS | 40.0% | |
| CCCAACATAGTCGGAAAAAA+CGG | + | chr6.3:4010091-4010110 | None:intergenic | 40.0% | |
| CTGAAAGCTGAAGAATATGG+AGG | - | chr6.3:4010990-4011009 | MS.gene20630:CDS | 40.0% | |
| GATGATTTATTGGTCACAGC+TGG | - | chr6.3:4010141-4010160 | MS.gene20630:CDS | 40.0% | |
| GGTAAATGTAGCCTCTATTG+AGG | + | chr6.3:4010775-4010794 | None:intergenic | 40.0% | |
| GTTCTGTCATATGCTCTTCA+AGG | - | chr6.3:4010271-4010290 | MS.gene20630:CDS | 40.0% | |
| GTTTATGCCCCTTGAAGTAT+CGG | + | chr6.3:4010359-4010378 | None:intergenic | 40.0% | |
| TGACCACAGTGTAAGGTTAT+GGG | - | chr6.3:4010437-4010456 | MS.gene20630:CDS | 40.0% | |
| TTGACCACAGTGTAAGGTTA+TGG | - | chr6.3:4010436-4010455 | MS.gene20630:CDS | 40.0% | |
| ! | AGGTACAATTTGGAGTCTAC+CGG | - | chr6.3:4010291-4010310 | MS.gene20630:CDS | 40.0% |
| ! | GAAGAGCATATGACAGAACT+TGG | + | chr6.3:4010270-4010289 | None:intergenic | 40.0% |
| ! | TCTATTGAGGTACCATGAGA+TGG | + | chr6.3:4010762-4010781 | None:intergenic | 40.0% |
| ! | TTCAGATTCGGTTCGTTGTT+TGG | + | chr6.3:4010975-4010994 | None:intergenic | 40.0% |
| !!! | CCGTTTTTTCCGACTATGTT+GGG | - | chr6.3:4010088-4010107 | MS.gene20630:CDS | 40.0% |
| ACTGTTGCCTATGACCAACA+AGG | - | chr6.3:4010510-4010529 | MS.gene20630:CDS | 45.0% | |
| ATTGTCCGCACCATGTCTAT+AGG | - | chr6.3:4010063-4010082 | MS.gene20630:CDS | 45.0% | |
| CAGGGAATCTTACATGTACG+CGG | - | chr6.3:4010480-4010499 | MS.gene20630:CDS | 45.0% | |
| CCAAAACGTGAGAACAGATG+AGG | + | chr6.3:4010949-4010968 | None:intergenic | 45.0% | |
| CTACGTGTAAATGCATGCCA+GGG | - | chr6.3:4010462-4010481 | MS.gene20630:CDS | 45.0% | |
| GATCCCATAACCTTACACTG+TGG | + | chr6.3:4010443-4010462 | None:intergenic | 45.0% | |
| GTTCTGTTGACCACAGTGTA+AGG | - | chr6.3:4010430-4010449 | MS.gene20630:CDS | 45.0% | |
| TCTACGTGTAAATGCATGCC+AGG | - | chr6.3:4010461-4010480 | MS.gene20630:CDS | 45.0% | |
| TCTTTGCCGTAGCAATGGAA+GGG | - | chr6.3:4010538-4010557 | MS.gene20630:CDS | 45.0% | |
| TGTGCCTTCGTGCTTGAAAT+GGG | - | chr6.3:4010896-4010915 | MS.gene20630:CDS | 45.0% | |
| TGTTGGTCATAGGCAACAGT+AGG | + | chr6.3:4010510-4010529 | None:intergenic | 45.0% | |
| TTTATTGGTCACAGCTGGTG+AGG | - | chr6.3:4010146-4010165 | MS.gene20630:CDS | 45.0% | |
| ! | CCCTTCGACACTTTTCTTGT+CGG | - | chr6.3:4010603-4010622 | MS.gene20630:CDS | 45.0% |
| ! | CCTCATCTGTTCTCACGTTT+TGG | - | chr6.3:4010946-4010965 | MS.gene20630:CDS | 45.0% |
| ! | TAAGCGCTGCGGATTTAGTT+TGG | - | chr6.3:4010734-4010753 | MS.gene20630:CDS | 45.0% |
| ! | TTCGACACTTTTCTTGTCGG+TGG | - | chr6.3:4010606-4010625 | MS.gene20630:CDS | 45.0% |
| !! | ACCGACAAGAAAAGTGTCGA+AGG | + | chr6.3:4010607-4010626 | None:intergenic | 45.0% |
| !! | CCGACAAGAAAAGTGTCGAA+GGG | + | chr6.3:4010606-4010625 | None:intergenic | 45.0% |
| !! | GAGTATTGACAGGAATCACG+AGG | - | chr6.3:4010848-4010867 | MS.gene20630:CDS | 45.0% |
| !!! | GCCGTTTTTTCCGACTATGT+TGG | - | chr6.3:4010087-4010106 | MS.gene20630:CDS | 45.0% |
| AAGTATGTAGTGGCAGGCTC+AGG | - | chr6.3:4010804-4010823 | MS.gene20630:CDS | 50.0% | |
| AGATGAGGCTGCAGCAAACA+TGG | + | chr6.3:4010934-4010953 | None:intergenic | 50.0% | |
| AGGCTACATTTACCCCAGAC+GGG | - | chr6.3:4010781-4010800 | MS.gene20630:CDS | 50.0% | |
| AGTCTACCGGAGAATCGTTG+AGG | - | chr6.3:4010304-4010323 | MS.gene20630:CDS | 50.0% | |
| CACTACATACTTCCCGTCTG+GGG | + | chr6.3:4010796-4010815 | None:intergenic | 50.0% | |
| CCACTACATACTTCCCGTCT+GGG | + | chr6.3:4010797-4010816 | None:intergenic | 50.0% | |
| CCATTGCTACGGCAAAGACA+AGG | + | chr6.3:4010536-4010555 | None:intergenic | 50.0% | |
| CCTTGTCTTTGCCGTAGCAA+TGG | - | chr6.3:4010533-4010552 | MS.gene20630:CDS | 50.0% | |
| CGCGTACATGTAAGATTCCC+TGG | + | chr6.3:4010482-4010501 | None:intergenic | 50.0% | |
| CTTTGCCGTAGCAATGGAAG+GGG | - | chr6.3:4010539-4010558 | MS.gene20630:CDS | 50.0% | |
| GAGGCTACATTTACCCCAGA+CGG | - | chr6.3:4010780-4010799 | MS.gene20630:CDS | 50.0% | |
| GCATGTTGGAGCAGCCATAT+TGG | - | chr6.3:4010873-4010892 | MS.gene20630:CDS | 50.0% | |
| GGAATCACGAGGTAGCATGT+TGG | - | chr6.3:4010859-4010878 | MS.gene20630:CDS | 50.0% | |
| GTCAATACTCCAAGCGTGCA+TGG | + | chr6.3:4010838-4010857 | None:intergenic | 50.0% | |
| GTCTTTGCCGTAGCAATGGA+AGG | - | chr6.3:4010537-4010556 | MS.gene20630:CDS | 50.0% | |
| GTGTGCCTTCGTGCTTGAAA+TGG | - | chr6.3:4010895-4010914 | MS.gene20630:CDS | 50.0% | |
| TTTGCCGTAGCAATGGAAGG+GGG | - | chr6.3:4010540-4010559 | MS.gene20630:CDS | 50.0% | |
| ! | AGCACGAAGGCACACCAATA+TGG | + | chr6.3:4010890-4010909 | None:intergenic | 50.0% |
| ! | TATGGAGGAGATAAGCGCTG+CGG | - | chr6.3:4010723-4010742 | MS.gene20630:CDS | 50.0% |
| !! | GACAAGGCCTTGTTGGTCAT+AGG | + | chr6.3:4010520-4010539 | None:intergenic | 50.0% |
| !! | TATGCCCCTTGAAGTATCGG+AGG | + | chr6.3:4010356-4010375 | None:intergenic | 50.0% |
| !! | TGCACGCTTGGAGTATTGAC+AGG | - | chr6.3:4010838-4010857 | MS.gene20630:CDS | 50.0% |
| AGCTCCCCCTTCCATTGCTA+CGG | + | chr6.3:4010547-4010566 | None:intergenic | 55.0% | |
| AGGCTGCAGCAAACATGGCA+CGG | + | chr6.3:4010929-4010948 | None:intergenic | 55.0% | |
| CGCTGCCTCCGATACTTCAA+GGG | - | chr6.3:4010348-4010367 | MS.gene20630:CDS | 55.0% | |
| CGGCTCCTATAGACATGGTG+CGG | + | chr6.3:4010071-4010090 | None:intergenic | 55.0% | |
| GCCACTACATACTTCCCGTC+TGG | + | chr6.3:4010798-4010817 | None:intergenic | 55.0% | |
| GCTGCCTCCGATACTTCAAG+GGG | - | chr6.3:4010349-4010368 | MS.gene20630:CDS | 55.0% | |
| GGAGCCCATTTCAAGCACGA+AGG | + | chr6.3:4010903-4010922 | None:intergenic | 55.0% | |
| TATGTAGTGGCAGGCTCAGG+AGG | - | chr6.3:4010807-4010826 | MS.gene20630:CDS | 55.0% | |
| TCGCTGCCTCCGATACTTCA+AGG | - | chr6.3:4010347-4010366 | MS.gene20630:CDS | 55.0% | |
| TGTCGGTGGTGATACTGCTG+AGG | - | chr6.3:4010620-4010639 | MS.gene20630:CDS | 55.0% | |
| TTGGGGCTGAAGTCCTGCTT+CGG | + | chr6.3:4011024-4011043 | None:intergenic | 55.0% | |
| ! | CCCAGACGGGAAGTATGTAG+TGG | - | chr6.3:4010794-4010813 | MS.gene20630:CDS | 55.0% |
| ! | CGGCAAAGACAAGGCCTTGT+TGG | + | chr6.3:4010527-4010546 | None:intergenic | 55.0% |
| ! | GACGGGAAGTATGTAGTGGC+AGG | - | chr6.3:4010798-4010817 | MS.gene20630:CDS | 55.0% |
| GCAGCAAACATGGCACGGCG+AGG | + | chr6.3:4010924-4010943 | None:intergenic | 65.0% | |
| GTAGTGGCAGGCTCAGGAGG+CGG | - | chr6.3:4010810-4010829 | MS.gene20630:CDS | 65.0% | |
| TAGTGGCAGGCTCAGGAGGC+GGG | - | chr6.3:4010811-4010830 | MS.gene20630:CDS | 65.0% | |
| GAGGCGGGACCATGCACGCT+TGG | - | chr6.3:4010826-4010845 | MS.gene20630:CDS | 70.0% | |
| ! | GGAGGCACAGACGCCGAAGC+AGG | - | chr6.3:4011008-4011027 | MS.gene20630:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 4010030 | 4011052 | 4010030 | ID=MS.gene20630 |
| chr6.3 | mRNA | 4010030 | 4011052 | 4010030 | ID=MS.gene20630.t1;Parent=MS.gene20630 |
| chr6.3 | exon | 4010030 | 4011052 | 4010030 | ID=MS.gene20630.t1.exon1;Parent=MS.gene20630.t1 |
| chr6.3 | CDS | 4010030 | 4011052 | 4010030 | ID=cds.MS.gene20630.t1;Parent=MS.gene20630.t1 |
| Gene Sequence |
| Protein sequence |