Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20990.t1 | XP_003591235.1 | 98.7 | 226 | 3 | 0 | 1 | 226 | 1 | 226 | 1.60E-122 | 448.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20990.t1 | O73944 | 33.3 | 186 | 102 | 6 | 13 | 196 | 3 | 168 | 1.4e-15 | 84.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20990.t1 | G7IAA5 | 98.7 | 226 | 3 | 0 | 1 | 226 | 1 | 226 | 1.1e-122 | 448.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058099 | MS.gene20990 | 0.808552 | 2.93E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20990.t1 | MTR_1g084740 | 98.673 | 226 | 3 | 0 | 1 | 226 | 1 | 226 | 1.25e-170 | 468 |
| MS.gene20990.t1 | MTR_1g084740 | 76.106 | 226 | 3 | 1 | 1 | 226 | 1 | 175 | 5.92e-118 | 333 |
| MS.gene20990.t1 | MTR_8g065050 | 65.455 | 220 | 71 | 3 | 1 | 219 | 1 | 216 | 1.88e-104 | 301 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20990.t1 | AT1G56700 | 70.000 | 220 | 63 | 2 | 1 | 220 | 1 | 217 | 7.03e-117 | 332 |
| MS.gene20990.t1 | AT1G56700 | 70.000 | 220 | 63 | 2 | 1 | 220 | 1 | 217 | 7.03e-117 | 332 |
| MS.gene20990.t1 | AT1G56700 | 70.000 | 220 | 63 | 2 | 1 | 220 | 1 | 217 | 7.03e-117 | 332 |
| MS.gene20990.t1 | AT1G23440 | 64.220 | 218 | 74 | 2 | 1 | 218 | 1 | 214 | 1.42e-106 | 306 |
| MS.gene20990.t1 | AT1G23440 | 64.220 | 218 | 74 | 2 | 1 | 218 | 1 | 214 | 1.42e-106 | 306 |
| MS.gene20990.t1 | AT1G56700 | 69.841 | 189 | 56 | 1 | 32 | 220 | 1 | 188 | 4.27e-100 | 289 |
| MS.gene20990.t1 | AT1G23440 | 53.191 | 94 | 40 | 2 | 1 | 94 | 1 | 90 | 6.37e-30 | 107 |
Find 63 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGTTCCAATAAAATTATC+TGG | 0.221027 | 1.3:+60109912 | MS.gene20990:CDS |
| ATGTTTGTTCAGCTGCATTT+TGG | 0.221330 | 1.3:+60110299 | MS.gene20990:intron |
| ATTTGCTGCTTCCTTATTAG+AGG | 0.294466 | 1.3:+60111176 | MS.gene20990:CDS |
| ACCTCCCGTATTCTTGAAAT+CGG | 0.310925 | 1.3:-60110532 | None:intergenic |
| CTTCCGTTGCCCTGATGAAA+TGG | 0.315906 | 1.3:+60110379 | MS.gene20990:CDS |
| AGGAAGCAGCAAATTGCATT+TGG | 0.316795 | 1.3:-60111167 | None:intergenic |
| ATTAGCAAGTACCTCTAATA+AGG | 0.317751 | 1.3:-60111187 | None:intergenic |
| GTAACAACAGTTTATATAAC+AGG | 0.332893 | 1.3:+60109689 | MS.gene20990:CDS |
| GGCTTCCATCCCATTTCATC+AGG | 0.344197 | 1.3:-60110389 | None:intergenic |
| TGCCAAAGGGTTTAGCTATC+GGG | 0.396835 | 1.3:+60109795 | MS.gene20990:CDS |
| TTCAGATTCCTTGGCAATAA+CGG | 0.399064 | 1.3:-60109885 | None:intergenic |
| CTATCATTCTCTTCGGTTCG+CGG | 0.401359 | 1.3:+60111080 | MS.gene20990:CDS |
| ACCTTTCGTTGCCAAGGTCT+TGG | 0.402676 | 1.3:-60111004 | None:intergenic |
| GGAAGCAGCAAATTGCATTT+GGG | 0.414368 | 1.3:-60111166 | None:intergenic |
| ATGTTTACTATCATTCTCTT+CGG | 0.426824 | 1.3:+60111073 | MS.gene20990:CDS |
| ACCAGAACAATTACATGAGC+TGG | 0.432033 | 1.3:-60111221 | None:intergenic |
| ACTTGAAGATTCAGATTCCT+TGG | 0.436551 | 1.3:-60109894 | None:intergenic |
| TTGCCAAAGGGTTTAGCTAT+CGG | 0.445632 | 1.3:+60109794 | MS.gene20990:CDS |
| TTATTCACAATTGTCTCCGT+TGG | 0.459045 | 1.3:-60109743 | None:intergenic |
| GTCTTGGTCATCTGCTCCAC+AGG | 0.464244 | 1.3:-60110988 | None:intergenic |
| ATGGCCCGATTTCAAGAATA+CGG | 0.466039 | 1.3:+60110527 | MS.gene20990:CDS |
| GTTCCCATTGTTCCTTCAGA+TGG | 0.480004 | 1.3:+60110508 | MS.gene20990:CDS |
| GACAATTGTGAATAATTTGA+CGG | 0.484102 | 1.3:+60109751 | MS.gene20990:CDS |
| TACAGCAGCTGAAGGACCTT+CGG | 0.491990 | 1.3:-60109669 | None:intergenic |
| CCTCCCGTATTCTTGAAATC+GGG | 0.492780 | 1.3:-60110531 | None:intergenic |
| TGTAGTATTCTTGATACTGC+TGG | 0.503788 | 1.3:+60109821 | MS.gene20990:CDS |
| CTCCCGATAGCTAAACCCTT+TGG | 0.506502 | 1.3:-60109797 | None:intergenic |
| TAACGGCAGATTGCAATGTC+TGG | 0.506661 | 1.3:-60109868 | None:intergenic |
| ATCATAACCTTTCGTTGCCA+AGG | 0.509665 | 1.3:-60111010 | None:intergenic |
| ACAGGTTTCAAGAAATTCCA+TGG | 0.515589 | 1.3:+60109707 | MS.gene20990:CDS |
| TTCCGTTGCCCTGATGAAAT+GGG | 0.529742 | 1.3:+60110380 | MS.gene20990:CDS |
| AAGTTCCAATAAAATTATCT+GGG | 0.531862 | 1.3:+60109913 | MS.gene20990:CDS |
| CGGGCCATCTGAAGGAACAA+TGG | 0.539127 | 1.3:-60110512 | None:intergenic |
| GGGCCATCTGAAGGAACAAT+GGG | 0.541004 | 1.3:-60110511 | None:intergenic |
| TGGTCATCTGCTCCACAGGA+AGG | 0.549415 | 1.3:-60110984 | None:intergenic |
| TCATTTATTGTGAAGAAGAG+TGG | 0.550686 | 1.3:-60111138 | None:intergenic |
| CTTGAAATCGGGCCATCTGA+AGG | 0.551552 | 1.3:-60110520 | None:intergenic |
| TTGGATTCTCTGAAACTCCA+TGG | 0.559574 | 1.3:-60109724 | None:intergenic |
| ATGTCTGGTACAGCGGAACA+AGG | 0.561027 | 1.3:-60109853 | None:intergenic |
| ATCCCATTTCATCAGGGCAA+CGG | 0.562088 | 1.3:-60110382 | None:intergenic |
| GCAATCTGCCGTTATTGCCA+AGG | 0.564914 | 1.3:+60109877 | MS.gene20990:CDS |
| GATTGCAATGTCTGGTACAG+CGG | 0.575127 | 1.3:-60109860 | None:intergenic |
| CATCCGCAGATGGGGTCCGA+AGG | 0.582064 | 1.3:+60109653 | None:intergenic |
| ACCAAGACCTTGGCAACGAA+AGG | 0.585242 | 1.3:+60111003 | MS.gene20990:CDS |
| ATTCTTGATACTGCTGGACA+AGG | 0.586542 | 1.3:+60109827 | MS.gene20990:CDS |
| GGAGCAGATGACCAAGACCT+TGG | 0.592442 | 1.3:+60110993 | MS.gene20990:CDS |
| CTTCGGTTCGCGGAGCAGAA+CGG | 0.596040 | 1.3:+60111090 | MS.gene20990:CDS |
| CCAGAACAATTACATGAGCT+GGG | 0.598749 | 1.3:-60111220 | None:intergenic |
| TGGCCCGATTTCAAGAATAC+GGG | 0.601050 | 1.3:+60110528 | MS.gene20990:CDS |
| GGGTTAACAGTGGTGCAACA+AGG | 0.614278 | 1.3:+60110321 | MS.gene20990:CDS |
| GGTCATCTGCTCCACAGGAA+GGG | 0.614706 | 1.3:-60110983 | None:intergenic |
| TGAAATGGGATGGAAGCCAC+AGG | 0.624135 | 1.3:+60110394 | MS.gene20990:CDS |
| ACTGTTGTTACAGCAGCTGA+AGG | 0.629270 | 1.3:-60109677 | None:intergenic |
| CATTTCATCAGGGCAACGGA+AGG | 0.630663 | 1.3:-60110378 | None:intergenic |
| TATGCAGACTACCCTTCCTG+TGG | 0.633375 | 1.3:+60110972 | MS.gene20990:intron |
| GCTTCCATCCCATTTCATCA+GGG | 0.640372 | 1.3:-60110388 | None:intergenic |
| GTTGCCCTGATGAAATGGGA+TGG | 0.648441 | 1.3:+60110384 | MS.gene20990:CDS |
| TGTCTGGTACAGCGGAACAA+GGG | 0.649049 | 1.3:-60109852 | None:intergenic |
| CCCGATTTCAAGAATACGGG+AGG | 0.650919 | 1.3:+60110531 | MS.gene20990:CDS |
| TGACATCTGATGATGCAGGA+AGG | 0.659977 | 1.3:+60111037 | MS.gene20990:CDS |
| GTAATGACATCTGATGATGC+AGG | 0.664436 | 1.3:+60111033 | MS.gene20990:CDS |
| AGAACGTCAAGCTGTCAATG+AGG | 0.679006 | 1.3:+60110352 | MS.gene20990:CDS |
| TGGAGTTTCAGAGAATCCAA+CGG | 0.696242 | 1.3:+60109727 | MS.gene20990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGATATGATAATATAATTA+TGG | + | chr1.3:60110121-60110140 | MS.gene20990:intron | 10.0% |
| !! | TATATTATCATATCTAAACA+AGG | - | chr1.3:60110117-60110136 | None:intergenic | 15.0% |
| !! | AAGTTCCAATAAAATTATCT+GGG | + | chr1.3:60109913-60109932 | MS.gene20990:CDS | 20.0% |
| !! | TACATAAATAAAACTTCAGA+AGG | - | chr1.3:60110012-60110031 | None:intergenic | 20.0% |
| !!! | TTTCTGCAATAAAAGTTTTA+TGG | - | chr1.3:60110488-60110507 | None:intergenic | 20.0% |
| ! | ATCATATCTAAACAAGGATA+CGG | - | chr1.3:60110111-60110130 | None:intergenic | 25.0% |
| ! | ATGTTTACTATCATTCTCTT+CGG | + | chr1.3:60111073-60111092 | MS.gene20990:CDS | 25.0% |
| ! | CAAGTTCCAATAAAATTATC+TGG | + | chr1.3:60109912-60109931 | MS.gene20990:CDS | 25.0% |
| ! | GACAATTGTGAATAATTTGA+CGG | + | chr1.3:60109751-60109770 | MS.gene20990:CDS | 25.0% |
| ! | GTAACAACAGTTTATATAAC+AGG | + | chr1.3:60109689-60109708 | MS.gene20990:CDS | 25.0% |
| ! | GTACAAATATGAAAATGTTG+AGG | + | chr1.3:60110616-60110635 | MS.gene20990:intron | 25.0% |
| ! | TTAGCATAGAACTGAAATAA+TGG | + | chr1.3:60110199-60110218 | MS.gene20990:intron | 25.0% |
| ! | TTATCATGAATCTTATGTTC+TGG | + | chr1.3:60110274-60110293 | MS.gene20990:intron | 25.0% |
| ! | TTGTGAAATGATACTTAGAA+TGG | - | chr1.3:60110698-60110717 | None:intergenic | 25.0% |
| !! | CTGTACTTTAAATATTTCTG+AGG | - | chr1.3:60110671-60110690 | None:intergenic | 25.0% |
| AAAACATGGAACAGTCATTA+AGG | - | chr1.3:60110905-60110924 | None:intergenic | 30.0% | |
| ACGGAATATGTGAAAAAGAA+GGG | + | chr1.3:60109770-60109789 | MS.gene20990:CDS | 30.0% | |
| ATGAAAACAAGTTTAACCTG+TGG | - | chr1.3:60110413-60110432 | None:intergenic | 30.0% | |
| ATTAGCAAGTACCTCTAATA+AGG | - | chr1.3:60111190-60111209 | None:intergenic | 30.0% | |
| TCATTTATTGTGAAGAAGAG+TGG | - | chr1.3:60111141-60111160 | None:intergenic | 30.0% | |
| TTAGGACAAAAGACAAAGTT+AGG | - | chr1.3:60110949-60110968 | None:intergenic | 30.0% | |
| ! | AATGGTAAGAAAGTTCTAGT+TGG | + | chr1.3:60110217-60110236 | MS.gene20990:intron | 30.0% |
| ! | ACTCACCCAGATAATTTTAT+TGG | - | chr1.3:60109921-60109940 | None:intergenic | 30.0% |
| ! | TAATAGAGTACTTCAAGATC+AGG | - | chr1.3:60110449-60110468 | None:intergenic | 30.0% |
| ! | TTCATTTTCAAAAACTTGCG+AGG | + | chr1.3:60110761-60110780 | MS.gene20990:intron | 30.0% |
| ! | TTGTTTTCATCAACCCTTTT+AGG | + | chr1.3:60110423-60110442 | MS.gene20990:intron | 30.0% |
| ! | TTTTATGGAACTGTCACTAA+AGG | - | chr1.3:60110473-60110492 | None:intergenic | 30.0% |
| AAAAAGAAGGGTTTGCCAAA+GGG | + | chr1.3:60109782-60109801 | MS.gene20990:CDS | 35.0% | |
| AAGATCACTGGAATTTGACA+TGG | + | chr1.3:60110159-60110178 | MS.gene20990:intron | 35.0% | |
| ACAGGTTTCAAGAAATTCCA+TGG | + | chr1.3:60109707-60109726 | MS.gene20990:CDS | 35.0% | |
| ACTTGAAGATTCAGATTCCT+TGG | - | chr1.3:60109897-60109916 | None:intergenic | 35.0% | |
| CTACACACAAAGTATGACTA+AGG | - | chr1.3:60109975-60109994 | None:intergenic | 35.0% | |
| CTTAGTCATACTTTGTGTGT+AGG | + | chr1.3:60109973-60109992 | MS.gene20990:intron | 35.0% | |
| GACGGAATATGTGAAAAAGA+AGG | + | chr1.3:60109769-60109788 | MS.gene20990:CDS | 35.0% | |
| TGTAGTATTCTTGATACTGC+TGG | + | chr1.3:60109821-60109840 | MS.gene20990:CDS | 35.0% | |
| TTATTCACAATTGTCTCCGT+TGG | - | chr1.3:60109746-60109765 | None:intergenic | 35.0% | |
| TTCAGATTCCTTGGCAATAA+CGG | - | chr1.3:60109888-60109907 | None:intergenic | 35.0% | |
| ! | ATGTTTGTTCAGCTGCATTT+TGG | + | chr1.3:60110299-60110318 | MS.gene20990:intron | 35.0% |
| ! | ATTTGCTGCTTCCTTATTAG+AGG | + | chr1.3:60111176-60111195 | MS.gene20990:CDS | 35.0% |
| ! | CACAAAGTTTCTAGATACCA+AGG | - | chr1.3:60110740-60110759 | None:intergenic | 35.0% |
| ! | TGTTTGTTCAGCTGCATTTT+GGG | + | chr1.3:60110300-60110319 | MS.gene20990:intron | 35.0% |
| ! | TTTTCGATTATCTGAGTCCT+TGG | + | chr1.3:60110720-60110739 | MS.gene20990:intron | 35.0% |
| !!! | TGTTCCATGTTTTTGAGATG+CGG | + | chr1.3:60110912-60110931 | MS.gene20990:intron | 35.0% |
| AACAAGTCTTTGCCTCTTGA+TGG | + | chr1.3:60110804-60110823 | MS.gene20990:intron | 40.0% | |
| ACAACCGCATCTCAAAAACA+TGG | - | chr1.3:60110919-60110938 | None:intergenic | 40.0% | |
| ACCTCCCGTATTCTTGAAAT+CGG | - | chr1.3:60110535-60110554 | None:intergenic | 40.0% | |
| ACTTCAAGATCAGGCCTAAA+AGG | - | chr1.3:60110440-60110459 | None:intergenic | 40.0% | |
| AGGAAGCAGCAAATTGCATT+TGG | - | chr1.3:60111170-60111189 | None:intergenic | 40.0% | |
| AGGGTAGTCTGCATAAAGTT+AGG | - | chr1.3:60110967-60110986 | None:intergenic | 40.0% | |
| AGGTGCAAGTGCAAAGATAT+TGG | + | chr1.3:60110836-60110855 | MS.gene20990:intron | 40.0% | |
| ATCATAACCTTTCGTTGCCA+AGG | - | chr1.3:60111013-60111032 | None:intergenic | 40.0% | |
| ATGGCCCGATTTCAAGAATA+CGG | + | chr1.3:60110527-60110546 | MS.gene20990:CDS | 40.0% | |
| ATTCTTGATACTGCTGGACA+AGG | + | chr1.3:60109827-60109846 | MS.gene20990:CDS | 40.0% | |
| CAAGAATACGGGAGGTAAAT+TGG | + | chr1.3:60110539-60110558 | MS.gene20990:intron | 40.0% | |
| CTTCAAGATCAGGCCTAAAA+GGG | - | chr1.3:60110439-60110458 | None:intergenic | 40.0% | |
| GAAAAAGAAGGGTTTGCCAA+AGG | + | chr1.3:60109781-60109800 | MS.gene20990:CDS | 40.0% | |
| GGAAGCAGCAAATTGCATTT+GGG | - | chr1.3:60111169-60111188 | None:intergenic | 40.0% | |
| TAACTGCGACTAAAGATCAC+TGG | + | chr1.3:60110147-60110166 | MS.gene20990:intron | 40.0% | |
| TGGAGTTTCAGAGAATCCAA+CGG | + | chr1.3:60109727-60109746 | MS.gene20990:CDS | 40.0% | |
| TTGCCAAAGGGTTTAGCTAT+CGG | + | chr1.3:60109794-60109813 | MS.gene20990:CDS | 40.0% | |
| ! | GTAATGACATCTGATGATGC+AGG | + | chr1.3:60111033-60111052 | MS.gene20990:CDS | 40.0% |
| ! | GTTTGTTCAGCTGCATTTTG+GGG | + | chr1.3:60110301-60110320 | MS.gene20990:intron | 40.0% |
| !! | TTGGATTCTCTGAAACTCCA+TGG | - | chr1.3:60109727-60109746 | None:intergenic | 40.0% |
| AAGTCTTTGCCTCTTGATGG+AGG | + | chr1.3:60110807-60110826 | MS.gene20990:intron | 45.0% | |
| ACTCACAAAGTAGGGATCCT+TGG | - | chr1.3:60109946-60109965 | None:intergenic | 45.0% | |
| ACTGTTGTTACAGCAGCTGA+AGG | - | chr1.3:60109680-60109699 | None:intergenic | 45.0% | |
| AGAACGTCAAGCTGTCAATG+AGG | + | chr1.3:60110352-60110371 | MS.gene20990:CDS | 45.0% | |
| AGGATCCCTACTTTGTGAGT+AGG | + | chr1.3:60109946-60109965 | MS.gene20990:intron | 45.0% | |
| ATCCCATTTCATCAGGGCAA+CGG | - | chr1.3:60110385-60110404 | None:intergenic | 45.0% | |
| ATTATCTGGGTGAGTTGCCA+AGG | + | chr1.3:60109926-60109945 | MS.gene20990:intron | 45.0% | |
| CCTCCCGTATTCTTGAAATC+GGG | - | chr1.3:60110534-60110553 | None:intergenic | 45.0% | |
| CCTTATATGCCTCCATCAAG+AGG | - | chr1.3:60110819-60110838 | None:intergenic | 45.0% | |
| GATTGCAATGTCTGGTACAG+CGG | - | chr1.3:60109863-60109882 | None:intergenic | 45.0% | |
| GCTTCCATCCCATTTCATCA+GGG | - | chr1.3:60110391-60110410 | None:intergenic | 45.0% | |
| GGATCCCTACTTTGTGAGTA+GGG | + | chr1.3:60109947-60109966 | MS.gene20990:intron | 45.0% | |
| GTTCCCATTGTTCCTTCAGA+TGG | + | chr1.3:60110508-60110527 | MS.gene20990:CDS | 45.0% | |
| GTTCTCTCGAGTTCAGTGTT+TGG | + | chr1.3:60110594-60110613 | MS.gene20990:intron | 45.0% | |
| TAACGGCAGATTGCAATGTC+TGG | - | chr1.3:60109871-60109890 | None:intergenic | 45.0% | |
| TGCCAAAGGGTTTAGCTATC+GGG | + | chr1.3:60109795-60109814 | MS.gene20990:CDS | 45.0% | |
| TGGCCCGATTTCAAGAATAC+GGG | + | chr1.3:60110528-60110547 | MS.gene20990:CDS | 45.0% | |
| TTCCGTTGCCCTGATGAAAT+GGG | + | chr1.3:60110380-60110399 | MS.gene20990:CDS | 45.0% | |
| ! | CCTCTTGATGGAGGCATATA+AGG | + | chr1.3:60110816-60110835 | MS.gene20990:intron | 45.0% |
| ! | CTATCATTCTCTTCGGTTCG+CGG | + | chr1.3:60111080-60111099 | MS.gene20990:CDS | 45.0% |
| ! | TGACATCTGATGATGCAGGA+AGG | + | chr1.3:60111037-60111056 | MS.gene20990:CDS | 45.0% |
| !!! | CTGCATTTTGGGGTTAACAG+TGG | + | chr1.3:60110311-60110330 | MS.gene20990:CDS | 45.0% |
| !!! | TTTTATAATATCATTTATTT+TGG | + | chr1.3:60110643-60110662 | MS.gene20990:intron | 5.0% |
| ACCAAGACCTTGGCAACGAA+AGG | + | chr1.3:60111003-60111022 | MS.gene20990:CDS | 50.0% | |
| ACCTTTCGTTGCCAAGGTCT+TGG | - | chr1.3:60111007-60111026 | None:intergenic | 50.0% | |
| AGGCTCCCTACTCACAAAGT+AGG | - | chr1.3:60109955-60109974 | None:intergenic | 50.0% | |
| ATGTCTGGTACAGCGGAACA+AGG | - | chr1.3:60109856-60109875 | None:intergenic | 50.0% | |
| CATTTCATCAGGGCAACGGA+AGG | - | chr1.3:60110381-60110400 | None:intergenic | 50.0% | |
| CCCGATTTCAAGAATACGGG+AGG | + | chr1.3:60110531-60110550 | MS.gene20990:CDS | 50.0% | |
| CTCCCGATAGCTAAACCCTT+TGG | - | chr1.3:60109800-60109819 | None:intergenic | 50.0% | |
| CTTCCGTTGCCCTGATGAAA+TGG | + | chr1.3:60110379-60110398 | MS.gene20990:CDS | 50.0% | |
| CTTGAAATCGGGCCATCTGA+AGG | - | chr1.3:60110523-60110542 | None:intergenic | 50.0% | |
| GCAATCTGCCGTTATTGCCA+AGG | + | chr1.3:60109877-60109896 | MS.gene20990:CDS | 50.0% | |
| GGCTCCCTACTCACAAAGTA+GGG | - | chr1.3:60109954-60109973 | None:intergenic | 50.0% | |
| GGCTTCCATCCCATTTCATC+AGG | - | chr1.3:60110392-60110411 | None:intergenic | 50.0% | |
| GGGCCATCTGAAGGAACAAT+GGG | - | chr1.3:60110514-60110533 | None:intergenic | 50.0% | |
| GGGTTAACAGTGGTGCAACA+AGG | + | chr1.3:60110321-60110340 | MS.gene20990:CDS | 50.0% | |
| GTTGCCCTGATGAAATGGGA+TGG | + | chr1.3:60110384-60110403 | MS.gene20990:CDS | 50.0% | |
| TACAGCAGCTGAAGGACCTT+CGG | - | chr1.3:60109672-60109691 | None:intergenic | 50.0% | |
| TATGCAGACTACCCTTCCTG+TGG | + | chr1.3:60110972-60110991 | MS.gene20990:intron | 50.0% | |
| TGAAATGGGATGGAAGCCAC+AGG | + | chr1.3:60110394-60110413 | MS.gene20990:CDS | 50.0% | |
| TGTCTGGTACAGCGGAACAA+GGG | - | chr1.3:60109855-60109874 | None:intergenic | 50.0% | |
| CGGGAGGTAAATTGGATCGC+TGG | + | chr1.3:60110547-60110566 | MS.gene20990:intron | 55.0% | |
| CGGGCCATCTGAAGGAACAA+TGG | - | chr1.3:60110515-60110534 | None:intergenic | 55.0% | |
| GGAGCAGATGACCAAGACCT+TGG | + | chr1.3:60110993-60111012 | MS.gene20990:CDS | 55.0% | |
| GGTCATCTGCTCCACAGGAA+GGG | - | chr1.3:60110986-60111005 | None:intergenic | 55.0% | |
| GTCTTGGTCATCTGCTCCAC+AGG | - | chr1.3:60110991-60111010 | None:intergenic | 55.0% | |
| TGGTCATCTGCTCCACAGGA+AGG | - | chr1.3:60110987-60111006 | None:intergenic | 55.0% | |
| ! | CTTCGGTTCGCGGAGCAGAA+CGG | + | chr1.3:60111090-60111109 | MS.gene20990:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 60109662 | 60111233 | 60109662 | ID=MS.gene20990 |
| chr1.3 | mRNA | 60109662 | 60111233 | 60109662 | ID=MS.gene20990.t1;Parent=MS.gene20990 |
| chr1.3 | exon | 60109662 | 60109934 | 60109662 | ID=MS.gene20990.t1.exon1;Parent=MS.gene20990.t1 |
| chr1.3 | CDS | 60109662 | 60109934 | 60109662 | ID=cds.MS.gene20990.t1;Parent=MS.gene20990.t1 |
| chr1.3 | exon | 60110311 | 60110415 | 60110311 | ID=MS.gene20990.t1.exon2;Parent=MS.gene20990.t1 |
| chr1.3 | CDS | 60110311 | 60110415 | 60110311 | ID=cds.MS.gene20990.t1;Parent=MS.gene20990.t1 |
| chr1.3 | exon | 60110505 | 60110552 | 60110505 | ID=MS.gene20990.t1.exon3;Parent=MS.gene20990.t1 |
| chr1.3 | CDS | 60110505 | 60110552 | 60110505 | ID=cds.MS.gene20990.t1;Parent=MS.gene20990.t1 |
| chr1.3 | exon | 60110979 | 60111233 | 60110979 | ID=MS.gene20990.t1.exon4;Parent=MS.gene20990.t1 |
| chr1.3 | CDS | 60110979 | 60111233 | 60110979 | ID=cds.MS.gene20990.t1;Parent=MS.gene20990.t1 |
| Gene Sequence |
| Protein sequence |
