Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21190.t1 | XP_003591235.1 | 96.4 | 225 | 8 | 0 | 1 | 225 | 1 | 225 | 1.00E-118 | 436 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21190.t1 | O73944 | 33.3 | 186 | 102 | 6 | 13 | 196 | 3 | 168 | 2.4e-15 | 84.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21190.t1 | G7IAA5 | 96.4 | 225 | 8 | 0 | 1 | 225 | 1 | 225 | 7.5e-119 | 436.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049265 | MS.gene21190 | 0.810105 | 1.36E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21190.t1 | MTR_1g084740 | 96.444 | 225 | 8 | 0 | 1 | 225 | 1 | 225 | 3.38e-165 | 454 |
MS.gene21190.t1 | MTR_1g084740 | 73.778 | 225 | 8 | 1 | 1 | 225 | 1 | 174 | 1.26e-112 | 320 |
MS.gene21190.t1 | MTR_8g065050 | 65.455 | 220 | 71 | 3 | 1 | 219 | 1 | 216 | 3.02e-104 | 300 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21190.t1 | AT1G56700 | 70.000 | 220 | 63 | 2 | 1 | 220 | 1 | 217 | 4.98e-117 | 333 |
MS.gene21190.t1 | AT1G56700 | 70.000 | 220 | 63 | 2 | 1 | 220 | 1 | 217 | 4.98e-117 | 333 |
MS.gene21190.t1 | AT1G56700 | 70.000 | 220 | 63 | 2 | 1 | 220 | 1 | 217 | 4.98e-117 | 333 |
MS.gene21190.t1 | AT1G23440 | 64.220 | 218 | 74 | 2 | 1 | 218 | 1 | 214 | 2.03e-106 | 306 |
MS.gene21190.t1 | AT1G23440 | 64.220 | 218 | 74 | 2 | 1 | 218 | 1 | 214 | 2.03e-106 | 306 |
MS.gene21190.t1 | AT1G56700 | 69.841 | 189 | 56 | 1 | 32 | 220 | 1 | 188 | 5.06e-100 | 288 |
MS.gene21190.t1 | AT1G23440 | 53.191 | 94 | 40 | 2 | 1 | 94 | 1 | 90 | 6.27e-30 | 107 |
Find 62 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAGTTCCAGTAAAATTATC+TGG | 0.213676 | 1.4:-68659559 | MS.gene21190:CDS |
ATGTTTGTTCAGCTGCATTT+TGG | 0.221330 | 1.4:-68659172 | MS.gene21190:intron |
ATTTGCTGCTTCCTTATTAG+AGG | 0.294466 | 1.4:-68658295 | MS.gene21190:CDS |
ACCTCCCGTATTCTTGAAAT+CGG | 0.310925 | 1.4:+68658939 | None:intergenic |
CTTCCGTTGCCCTGATGAAA+TGG | 0.315906 | 1.4:-68659092 | MS.gene21190:CDS |
AGGAAGCAGCAAATTGCATT+TGG | 0.316795 | 1.4:+68658304 | None:intergenic |
ATTAGCAAGTACCTCTAATA+AGG | 0.317751 | 1.4:+68658284 | None:intergenic |
GTAACAACAGTTTATATAAC+AGG | 0.332893 | 1.4:-68659782 | MS.gene21190:CDS |
GGCTTCCATCCCATTTCATC+AGG | 0.344197 | 1.4:+68659082 | None:intergenic |
TGCCAAAGGGTTTAGCTATC+GGG | 0.396835 | 1.4:-68659676 | MS.gene21190:CDS |
TTCAGATTCCTTGGCAATAA+CGG | 0.399064 | 1.4:+68659586 | None:intergenic |
CTATCATTCTCTTCGGTTCG+CGG | 0.401359 | 1.4:-68658391 | MS.gene21190:CDS |
ACCTTTCGTTGCCAAGGTCT+TGG | 0.402676 | 1.4:+68658467 | None:intergenic |
GGAAGCAGCAAATTGCATTT+GGG | 0.414368 | 1.4:+68658305 | None:intergenic |
ATGTTTACTATCATTCTCTT+CGG | 0.426824 | 1.4:-68658398 | MS.gene21190:CDS |
ACTTGAAGATTCAGATTCCT+TGG | 0.436551 | 1.4:+68659577 | None:intergenic |
TTGCCAAAGGGTTTAGCTAT+CGG | 0.445632 | 1.4:-68659677 | MS.gene21190:CDS |
TTATTCACAATTGTCTCCGT+TGG | 0.459045 | 1.4:+68659728 | None:intergenic |
GTCTTGGTCATCTGCTCCAC+AGG | 0.464244 | 1.4:+68658483 | None:intergenic |
ATGGCCCGATTTCAAGAATA+CGG | 0.466039 | 1.4:-68658944 | MS.gene21190:CDS |
GTTCCCATTGTTCCTTCAGA+TGG | 0.480004 | 1.4:-68658963 | MS.gene21190:CDS |
GAATTTATCTGATCAAAGAA+TGG | 0.481561 | 1.4:+68657893 | None:intergenic |
GACAATTGTGAATAATTTGA+CGG | 0.484102 | 1.4:-68659720 | MS.gene21190:CDS |
TACAGCAGCTGAAGGACCTT+CGG | 0.491990 | 1.4:+68659802 | None:intergenic |
CCTCCCGTATTCTTGAAATC+GGG | 0.492780 | 1.4:+68658940 | None:intergenic |
TGTAGTATTCTTGATACTGC+TGG | 0.503788 | 1.4:-68659650 | MS.gene21190:CDS |
CTCCCGATAGCTAAACCCTT+TGG | 0.506502 | 1.4:+68659674 | None:intergenic |
TAACGGCAGATTGCAATGTC+TGG | 0.506661 | 1.4:+68659603 | None:intergenic |
ATCATAACCTTTCGTTGCCA+AGG | 0.509665 | 1.4:+68658461 | None:intergenic |
ACAGGTTTCAAGAAATTCCA+TGG | 0.515589 | 1.4:-68659764 | MS.gene21190:CDS |
TTCCGTTGCCCTGATGAAAT+GGG | 0.529742 | 1.4:-68659091 | MS.gene21190:CDS |
CGGGCCATCTGAAGGAACAA+TGG | 0.539127 | 1.4:+68658959 | None:intergenic |
GGGCCATCTGAAGGAACAAT+GGG | 0.541004 | 1.4:+68658960 | None:intergenic |
TGGTCATCTGCTCCACAGGA+AGG | 0.549415 | 1.4:+68658487 | None:intergenic |
TCATTTATTGTGAAGAAGAG+TGG | 0.550686 | 1.4:+68658333 | None:intergenic |
CTTGAAATCGGGCCATCTGA+AGG | 0.551552 | 1.4:+68658951 | None:intergenic |
AAGTTCCAGTAAAATTATCT+GGG | 0.558998 | 1.4:-68659558 | MS.gene21190:intron |
TTGGATTCTCTGAAACTCCA+TGG | 0.559574 | 1.4:+68659747 | None:intergenic |
ATGTCTGGTACAGCGGAACA+AGG | 0.561027 | 1.4:+68659618 | None:intergenic |
ATCCCATTTCATCAGGGCAA+CGG | 0.562088 | 1.4:+68659089 | None:intergenic |
GCAATCTGCCGTTATTGCCA+AGG | 0.564914 | 1.4:-68659594 | MS.gene21190:CDS |
GATTGCAATGTCTGGTACAG+CGG | 0.575127 | 1.4:+68659611 | None:intergenic |
CATCCGCAGATGGGGTCCGA+AGG | 0.582064 | 1.4:-68659818 | None:intergenic |
ACCAAGACCTTGGCAACGAA+AGG | 0.585242 | 1.4:-68658468 | MS.gene21190:CDS |
ATTCTTGATACTGCTGGACA+AGG | 0.586542 | 1.4:-68659644 | MS.gene21190:CDS |
GGAGCAGATGACCAAGACCT+TGG | 0.592442 | 1.4:-68658478 | MS.gene21190:CDS |
CTTCGGTTCGCGGAGCAGAA+CGG | 0.596040 | 1.4:-68658381 | MS.gene21190:CDS |
TGGCCCGATTTCAAGAATAC+GGG | 0.601050 | 1.4:-68658943 | MS.gene21190:CDS |
GGGTTAACAGTGGTGCAACA+AGG | 0.614278 | 1.4:-68659150 | MS.gene21190:CDS |
GGTCATCTGCTCCACAGGAA+GGG | 0.614706 | 1.4:+68658488 | None:intergenic |
TGAAATGGGATGGAAGCCAC+AGG | 0.624135 | 1.4:-68659077 | MS.gene21190:intron |
ACTGTTGTTACAGCAGCTGA+AGG | 0.629270 | 1.4:+68659794 | None:intergenic |
CATTTCATCAGGGCAACGGA+AGG | 0.630663 | 1.4:+68659093 | None:intergenic |
TATGCAGACTACCCTTCCTG+TGG | 0.633375 | 1.4:-68658499 | MS.gene21190:intron |
GCTTCCATCCCATTTCATCA+GGG | 0.640372 | 1.4:+68659083 | None:intergenic |
GTTGCCCTGATGAAATGGGA+TGG | 0.648441 | 1.4:-68659087 | MS.gene21190:CDS |
TGTCTGGTACAGCGGAACAA+GGG | 0.649049 | 1.4:+68659619 | None:intergenic |
CCCGATTTCAAGAATACGGG+AGG | 0.650919 | 1.4:-68658940 | MS.gene21190:intron |
TGACATCTGATGATGCAGGA+AGG | 0.659977 | 1.4:-68658434 | MS.gene21190:CDS |
GTAATGACATCTGATGATGC+AGG | 0.664436 | 1.4:-68658438 | MS.gene21190:CDS |
AGAACGTCAAGCTGTCAATG+AGG | 0.679006 | 1.4:-68659119 | MS.gene21190:CDS |
TGGAGTTTCAGAGAATCCAA+CGG | 0.696242 | 1.4:-68659744 | MS.gene21190:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAGATATGATAATATAATTA+TGG | - | chr1.4:68658364-68658383 | MS.gene21190:CDS | 10.0% |
!! | AATAAGATATTGTTATGAAA+TGG | - | chr1.4:68659560-68659579 | MS.gene21190:CDS | 15.0% |
!! | AATTTATAACATTTCATTCA+AGG | + | chr1.4:68659523-68659542 | None:intergenic | 15.0% |
!! | TATATTATCATATCTAAACA+AGG | + | chr1.4:68658360-68658379 | None:intergenic | 15.0% |
!! | TTATGAAATGGAAATAAAAA+TGG | - | chr1.4:68659572-68659591 | MS.gene21190:CDS | 15.0% |
!! | TACATAAATAAAACTTCAGA+AGG | + | chr1.4:68658255-68658274 | None:intergenic | 20.0% |
!!! | AGTAATTTACAGTGTTTTTT+CGG | - | chr1.4:68659773-68659792 | MS.gene21190:CDS | 20.0% |
!!! | TTTCTGCAATAAAAGTTTTA+TGG | + | chr1.4:68658731-68658750 | None:intergenic | 20.0% |
! | AAGTTCCAGTAAAATTATCT+GGG | - | chr1.4:68658156-68658175 | MS.gene21190:intron | 25.0% |
! | ATCATATCTAAACAAGGATA+CGG | + | chr1.4:68658354-68658373 | None:intergenic | 25.0% |
! | ATGTTTACTATCATTCTCTT+CGG | - | chr1.4:68659316-68659335 | MS.gene21190:intron | 25.0% |
! | GACAATTGTGAATAATTTGA+CGG | - | chr1.4:68657994-68658013 | MS.gene21190:intron | 25.0% |
! | GTAACAACAGTTTATATAAC+AGG | - | chr1.4:68657932-68657951 | MS.gene21190:intron | 25.0% |
! | GTACAAATATGAAAATGTTG+AGG | - | chr1.4:68658859-68658878 | MS.gene21190:intron | 25.0% |
! | TTAGCATAGAACTGAAATAA+TGG | - | chr1.4:68658442-68658461 | MS.gene21190:CDS | 25.0% |
! | TTATCATGAATCTTATGTTC+TGG | - | chr1.4:68658517-68658536 | MS.gene21190:intron | 25.0% |
! | TTGTGAAATGATACTTAGAA+TGG | + | chr1.4:68658941-68658960 | None:intergenic | 25.0% |
!! | CTGTTCTTTAAATATTTCTG+AGG | + | chr1.4:68658914-68658933 | None:intergenic | 25.0% |
AAAACATGGAACAGTCATTA+AGG | + | chr1.4:68659148-68659167 | None:intergenic | 30.0% | |
ACGGAATATGTGAAAAAGAA+GGG | - | chr1.4:68658013-68658032 | MS.gene21190:intron | 30.0% | |
ATGAAAACAAGTTTAACCTG+TGG | + | chr1.4:68658656-68658675 | None:intergenic | 30.0% | |
ATTAGCAAGTACCTCTAATA+AGG | + | chr1.4:68659433-68659452 | None:intergenic | 30.0% | |
CAAGTTCCAGTAAAATTATC+TGG | - | chr1.4:68658155-68658174 | MS.gene21190:intron | 30.0% | |
TCATGAATTACTTAGTGTCT+TGG | - | chr1.4:68658308-68658327 | MS.gene21190:CDS | 30.0% | |
TCATTTATTGTGAAGAAGAG+TGG | + | chr1.4:68659384-68659403 | None:intergenic | 30.0% | |
TTAGGACAAAAGACAAAGTT+AGG | + | chr1.4:68659192-68659211 | None:intergenic | 30.0% | |
! | AATGGTAAGAAAGTTCTAGT+TGG | - | chr1.4:68658460-68658479 | MS.gene21190:CDS | 30.0% |
! | TAATAGAGTACTTCAAGATC+AGG | + | chr1.4:68658692-68658711 | None:intergenic | 30.0% |
! | TTCATTTTCAAAAACTTGCG+AGG | - | chr1.4:68659004-68659023 | MS.gene21190:intron | 30.0% |
! | TTGTTTTCATCAACCCTTTT+AGG | - | chr1.4:68658666-68658685 | MS.gene21190:intron | 30.0% |
! | TTTTACCGAGACATACTTAT+CGG | + | chr1.4:68659741-68659760 | None:intergenic | 30.0% |
! | TTTTATGGAACTGTCACTAA+AGG | + | chr1.4:68658716-68658735 | None:intergenic | 30.0% |
AAAAAGAAGGGTTTGCCAAA+GGG | - | chr1.4:68658025-68658044 | MS.gene21190:intron | 35.0% | |
AAGATCACTGGAATTTGACA+TGG | - | chr1.4:68658402-68658421 | MS.gene21190:CDS | 35.0% | |
ACAGGTTTCAAGAAATTCCA+TGG | - | chr1.4:68657950-68657969 | MS.gene21190:intron | 35.0% | |
ACTTGAAGATTCAGATTCCT+TGG | + | chr1.4:68658140-68658159 | None:intergenic | 35.0% | |
CTACACACAAAGTATGACTA+AGG | + | chr1.4:68658218-68658237 | None:intergenic | 35.0% | |
CTTAGTCATACTTTGTGTGT+AGG | - | chr1.4:68658216-68658235 | MS.gene21190:intron | 35.0% | |
GACGGAATATGTGAAAAAGA+AGG | - | chr1.4:68658012-68658031 | MS.gene21190:intron | 35.0% | |
TAACTGCAACTAAAGATCAC+TGG | - | chr1.4:68658390-68658409 | MS.gene21190:CDS | 35.0% | |
TGTAGTATTCTTGATACTGC+TGG | - | chr1.4:68658064-68658083 | MS.gene21190:intron | 35.0% | |
TTATTCACAATTGTCTCCGT+TGG | + | chr1.4:68657989-68658008 | None:intergenic | 35.0% | |
TTCAGATTCCTTGGCAATAA+CGG | + | chr1.4:68658131-68658150 | None:intergenic | 35.0% | |
! | ACTCACCCAGATAATTTTAC+TGG | + | chr1.4:68658164-68658183 | None:intergenic | 35.0% |
! | ATGTTTGTTCAGCTGCATTT+TGG | - | chr1.4:68658542-68658561 | MS.gene21190:intron | 35.0% |
! | ATTTGCTGCTTCCTTATTAG+AGG | - | chr1.4:68659419-68659438 | MS.gene21190:intron | 35.0% |
! | CACAAAGTTTCTAGATACCA+AGG | + | chr1.4:68658983-68659002 | None:intergenic | 35.0% |
! | TGTTTGTTCAGCTGCATTTT+GGG | - | chr1.4:68658543-68658562 | MS.gene21190:intron | 35.0% |
! | TTTTAGCCCTTAAAATGCTG+AGG | - | chr1.4:68659606-68659625 | MS.gene21190:CDS | 35.0% |
! | TTTTCGATTATCTGAGTCCT+TGG | - | chr1.4:68658963-68658982 | MS.gene21190:CDS | 35.0% |
!! | TTTTCGGTTTGATGCTCAAT+AGG | - | chr1.4:68659789-68659808 | MS.gene21190:CDS | 35.0% |
!!! | TGTTCCATGTTTTTGAGATG+CGG | - | chr1.4:68659155-68659174 | MS.gene21190:CDS | 35.0% |
AACAAGTCTTTGCCTCTTGA+TGG | - | chr1.4:68659047-68659066 | MS.gene21190:intron | 40.0% | |
ACAACCGCATCTCAAAAACA+TGG | + | chr1.4:68659162-68659181 | None:intergenic | 40.0% | |
ACCAGAACAATTACATGAGC+TGG | + | chr1.4:68659467-68659486 | None:intergenic | 40.0% | |
ACCTCCCGTATTCTTGAAAT+CGG | + | chr1.4:68658778-68658797 | None:intergenic | 40.0% | |
ACTTCAAGATCAGGCCTAAA+AGG | + | chr1.4:68658683-68658702 | None:intergenic | 40.0% | |
AGGAAGCAGCAAATTGCATT+TGG | + | chr1.4:68659413-68659432 | None:intergenic | 40.0% | |
AGGGTAGTCTGCATAAAGTT+AGG | + | chr1.4:68659210-68659229 | None:intergenic | 40.0% | |
AGGTGCAAGTGCAAAGATAT+TGG | - | chr1.4:68659079-68659098 | MS.gene21190:CDS | 40.0% | |
ATCATAACCTTTCGTTGCCA+AGG | + | chr1.4:68659256-68659275 | None:intergenic | 40.0% | |
ATGGCCCGATTTCAAGAATA+CGG | - | chr1.4:68658770-68658789 | MS.gene21190:intron | 40.0% | |
ATTCTTGATACTGCTGGACA+AGG | - | chr1.4:68658070-68658089 | MS.gene21190:intron | 40.0% | |
CAAGAATACGGGAGGTAAAT+TGG | - | chr1.4:68658782-68658801 | MS.gene21190:intron | 40.0% | |
CCAGAACAATTACATGAGCT+GGG | + | chr1.4:68659466-68659485 | None:intergenic | 40.0% | |
CTTCAAGATCAGGCCTAAAA+GGG | + | chr1.4:68658682-68658701 | None:intergenic | 40.0% | |
GAAAAAGAAGGGTTTGCCAA+AGG | - | chr1.4:68658024-68658043 | MS.gene21190:intron | 40.0% | |
GGAAGCAGCAAATTGCATTT+GGG | + | chr1.4:68659412-68659431 | None:intergenic | 40.0% | |
TGGAGTTTCAGAGAATCCAA+CGG | - | chr1.4:68657970-68657989 | MS.gene21190:intron | 40.0% | |
TGTAGCCGATAAGTATGTCT+CGG | - | chr1.4:68659733-68659752 | MS.gene21190:CDS | 40.0% | |
TTGCCAAAGGGTTTAGCTAT+CGG | - | chr1.4:68658037-68658056 | MS.gene21190:intron | 40.0% | |
! | AGCTTGCCTCAGCATTTTAA+GGG | + | chr1.4:68659615-68659634 | None:intergenic | 40.0% |
! | GTAATGACATCTGATGATGC+AGG | - | chr1.4:68659276-68659295 | MS.gene21190:intron | 40.0% |
! | GTTTGTTCAGCTGCATTTTG+GGG | - | chr1.4:68658544-68658563 | MS.gene21190:intron | 40.0% |
! | TGTTGTCATGCTTCTGAGAA+TGG | - | chr1.4:68659486-68659505 | MS.gene21190:intron | 40.0% |
!! | TTGGATTCTCTGAAACTCCA+TGG | + | chr1.4:68657970-68657989 | None:intergenic | 40.0% |
AAGTCTTTGCCTCTTGATGG+AGG | - | chr1.4:68659050-68659069 | MS.gene21190:intron | 45.0% | |
ACTCACAAAGTAGGGATCCT+TGG | + | chr1.4:68658189-68658208 | None:intergenic | 45.0% | |
ACTGTTGTTACAGCAGCTGA+AGG | + | chr1.4:68657923-68657942 | None:intergenic | 45.0% | |
AGAACGTCAAGCTGTCAATG+AGG | - | chr1.4:68658595-68658614 | MS.gene21190:intron | 45.0% | |
AGGATCCCTACTTTGTGAGT+AGG | - | chr1.4:68658189-68658208 | MS.gene21190:intron | 45.0% | |
ATCCCATTTCATCAGGGCAA+CGG | + | chr1.4:68658628-68658647 | None:intergenic | 45.0% | |
ATTATCTGGGTGAGTTGCCA+AGG | - | chr1.4:68658169-68658188 | MS.gene21190:intron | 45.0% | |
CCCAGCTCATGTAATTGTTC+TGG | - | chr1.4:68659463-68659482 | MS.gene21190:intron | 45.0% | |
CCTCCCGTATTCTTGAAATC+GGG | + | chr1.4:68658777-68658796 | None:intergenic | 45.0% | |
CCTTATATGCCTCCATCAAG+AGG | + | chr1.4:68659062-68659081 | None:intergenic | 45.0% | |
GATTGCAATGTCTGGTACAG+CGG | + | chr1.4:68658106-68658125 | None:intergenic | 45.0% | |
GCTTCCATCCCATTTCATCA+GGG | + | chr1.4:68658634-68658653 | None:intergenic | 45.0% | |
GGATCCCTACTTTGTGAGTA+GGG | - | chr1.4:68658190-68658209 | MS.gene21190:intron | 45.0% | |
GTTCCCATTGTTCCTTCAGA+TGG | - | chr1.4:68658751-68658770 | MS.gene21190:intron | 45.0% | |
GTTCTCTCGAGTTCAGTGTT+TGG | - | chr1.4:68658837-68658856 | MS.gene21190:intron | 45.0% | |
TAACGGCAGATTGCAATGTC+TGG | + | chr1.4:68658114-68658133 | None:intergenic | 45.0% | |
TGCCAAAGGGTTTAGCTATC+GGG | - | chr1.4:68658038-68658057 | MS.gene21190:intron | 45.0% | |
TGGCCCGATTTCAAGAATAC+GGG | - | chr1.4:68658771-68658790 | MS.gene21190:intron | 45.0% | |
TTCCGTTGCCCTGATGAAAT+GGG | - | chr1.4:68658623-68658642 | MS.gene21190:intron | 45.0% | |
! | CAGCTTGCCTCAGCATTTTA+AGG | + | chr1.4:68659616-68659635 | None:intergenic | 45.0% |
! | CCTCTTGATGGAGGCATATA+AGG | - | chr1.4:68659059-68659078 | MS.gene21190:intron | 45.0% |
! | CTATCATTCTCTTCGGTTCG+CGG | - | chr1.4:68659323-68659342 | MS.gene21190:intron | 45.0% |
! | TGACATCTGATGATGCAGGA+AGG | - | chr1.4:68659280-68659299 | MS.gene21190:intron | 45.0% |
!!! | CTGCATTTTGGGGTTAACAG+TGG | - | chr1.4:68658554-68658573 | MS.gene21190:intron | 45.0% |
!!! | TTTTATAATATCATTTATTT+TGG | - | chr1.4:68658886-68658905 | MS.gene21190:intron | 5.0% |
ACCAAGACCTTGGCAACGAA+AGG | - | chr1.4:68659246-68659265 | MS.gene21190:intron | 50.0% | |
ACCTTTCGTTGCCAAGGTCT+TGG | + | chr1.4:68659250-68659269 | None:intergenic | 50.0% | |
AGGCTCCCTACTCACAAAGT+AGG | + | chr1.4:68658198-68658217 | None:intergenic | 50.0% | |
ATGTCTGGTACAGCGGAACA+AGG | + | chr1.4:68658099-68658118 | None:intergenic | 50.0% | |
CATTTCATCAGGGCAACGGA+AGG | + | chr1.4:68658624-68658643 | None:intergenic | 50.0% | |
CCCGATTTCAAGAATACGGG+AGG | - | chr1.4:68658774-68658793 | MS.gene21190:intron | 50.0% | |
CTCCCGATAGCTAAACCCTT+TGG | + | chr1.4:68658043-68658062 | None:intergenic | 50.0% | |
CTGAGGCAAGCTGACATCTT+AGG | - | chr1.4:68659623-68659642 | MS.gene21190:CDS | 50.0% | |
CTTCCGTTGCCCTGATGAAA+TGG | - | chr1.4:68658622-68658641 | MS.gene21190:intron | 50.0% | |
CTTGAAATCGGGCCATCTGA+AGG | + | chr1.4:68658766-68658785 | None:intergenic | 50.0% | |
GCAATCTGCCGTTATTGCCA+AGG | - | chr1.4:68658120-68658139 | MS.gene21190:intron | 50.0% | |
GGCTCCCTACTCACAAAGTA+GGG | + | chr1.4:68658197-68658216 | None:intergenic | 50.0% | |
GGCTTCCATCCCATTTCATC+AGG | + | chr1.4:68658635-68658654 | None:intergenic | 50.0% | |
GGGCCATCTGAAGGAACAAT+GGG | + | chr1.4:68658757-68658776 | None:intergenic | 50.0% | |
GGGTTAACAGTGGTGCAACA+AGG | - | chr1.4:68658564-68658583 | MS.gene21190:intron | 50.0% | |
GTTGCCCTGATGAAATGGGA+TGG | - | chr1.4:68658627-68658646 | MS.gene21190:intron | 50.0% | |
TACAGCAGCTGAAGGACCTT+CGG | + | chr1.4:68657915-68657934 | None:intergenic | 50.0% | |
TATGCAGACTACCCTTCCTG+TGG | - | chr1.4:68659215-68659234 | MS.gene21190:intron | 50.0% | |
TGAAATGGGATGGAAGCCAC+AGG | - | chr1.4:68658637-68658656 | MS.gene21190:intron | 50.0% | |
TGTCTGGTACAGCGGAACAA+GGG | + | chr1.4:68658098-68658117 | None:intergenic | 50.0% | |
CGGGAGGTAAATTGGATCGC+TGG | - | chr1.4:68658790-68658809 | MS.gene21190:intron | 55.0% | |
CGGGCCATCTGAAGGAACAA+TGG | + | chr1.4:68658758-68658777 | None:intergenic | 55.0% | |
GGAGCAGATGACCAAGACCT+TGG | - | chr1.4:68659236-68659255 | MS.gene21190:intron | 55.0% | |
GGTCATCTGCTCCACAGGAA+GGG | + | chr1.4:68659229-68659248 | None:intergenic | 55.0% | |
GTCTTGGTCATCTGCTCCAC+AGG | + | chr1.4:68659234-68659253 | None:intergenic | 55.0% | |
TGGTCATCTGCTCCACAGGA+AGG | + | chr1.4:68659230-68659249 | None:intergenic | 55.0% | |
! | CTTCGGTTCGCGGAGCAGAA+CGG | - | chr1.4:68659333-68659352 | MS.gene21190:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 68657905 | 68659831 | 68657905 | ID=MS.gene21190 |
chr1.4 | mRNA | 68657905 | 68659831 | 68657905 | ID=MS.gene21190.t1;Parent=MS.gene21190 |
chr1.4 | exon | 68659559 | 68659831 | 68659559 | ID=MS.gene21190.t1.exon1;Parent=MS.gene21190.t1 |
chr1.4 | CDS | 68659559 | 68659831 | 68659559 | ID=cds.MS.gene21190.t1;Parent=MS.gene21190.t1 |
chr1.4 | exon | 68659078 | 68659182 | 68659078 | ID=MS.gene21190.t1.exon2;Parent=MS.gene21190.t1 |
chr1.4 | CDS | 68659078 | 68659182 | 68659078 | ID=cds.MS.gene21190.t1;Parent=MS.gene21190.t1 |
chr1.4 | exon | 68658941 | 68658988 | 68658941 | ID=MS.gene21190.t1.exon3;Parent=MS.gene21190.t1 |
chr1.4 | CDS | 68658941 | 68658988 | 68658941 | ID=cds.MS.gene21190.t1;Parent=MS.gene21190.t1 |
chr1.4 | exon | 68658284 | 68658514 | 68658284 | ID=MS.gene21190.t1.exon4;Parent=MS.gene21190.t1 |
chr1.4 | CDS | 68658284 | 68658514 | 68658284 | ID=cds.MS.gene21190.t1;Parent=MS.gene21190.t1 |
chr1.4 | exon | 68657905 | 68657925 | 68657905 | ID=MS.gene21190.t1.exon5;Parent=MS.gene21190.t1 |
chr1.4 | CDS | 68657905 | 68657925 | 68657905 | ID=cds.MS.gene21190.t1;Parent=MS.gene21190.t1 |
Gene Sequence |
Protein sequence |