Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21193.t1 | XP_003591371.1 | 88 | 183 | 6 | 1 | 1 | 167 | 22 | 204 | 1.10E-80 | 309.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21193.t1 | Q9LZQ9 | 74.9 | 179 | 27 | 2 | 5 | 167 | 32 | 208 | 2.1e-67 | 256.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21193.t1 | G7ICV1 | 88.0 | 183 | 6 | 1 | 1 | 167 | 22 | 204 | 8.0e-81 | 309.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051198 | MS.gene21193 | 0.80467 | 1.93E-49 | -1.69E-46 |
MS.gene051800 | MS.gene21193 | 0.818005 | 2.46E-52 | -1.69E-46 |
MS.gene056507 | MS.gene21193 | 0.822004 | 2.99E-53 | -1.69E-46 |
MS.gene058010 | MS.gene21193 | 0.808532 | 2.96E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21193.t1 | MTR_1g086640 | 87.500 | 184 | 7 | 1 | 1 | 168 | 22 | 205 | 3.67e-108 | 324 |
MS.gene21193.t1 | MTR_3g052610 | 70.813 | 209 | 16 | 2 | 2 | 168 | 23 | 228 | 1.84e-92 | 283 |
MS.gene21193.t1 | MTR_4g485610 | 71.512 | 172 | 24 | 3 | 1 | 170 | 23 | 171 | 9.52e-74 | 234 |
MS.gene21193.t1 | MTR_5g075310 | 51.007 | 149 | 62 | 1 | 26 | 163 | 199 | 347 | 1.28e-45 | 159 |
MS.gene21193.t1 | MTR_6g061840 | 52.055 | 146 | 59 | 1 | 29 | 163 | 247 | 392 | 2.63e-45 | 157 |
MS.gene21193.t1 | MTR_6g061840 | 52.055 | 146 | 59 | 1 | 29 | 163 | 247 | 392 | 8.20e-45 | 157 |
MS.gene21193.t1 | MTR_6g061840 | 52.055 | 146 | 59 | 1 | 29 | 163 | 247 | 392 | 9.66e-45 | 157 |
MS.gene21193.t1 | MTR_1g023985 | 50.336 | 149 | 64 | 1 | 29 | 167 | 563 | 711 | 1.45e-43 | 154 |
MS.gene21193.t1 | MTR_3g023880 | 51.748 | 143 | 59 | 1 | 31 | 163 | 407 | 549 | 2.80e-43 | 153 |
MS.gene21193.t1 | MTR_2g098440 | 46.622 | 148 | 69 | 2 | 29 | 166 | 564 | 711 | 5.15e-41 | 146 |
MS.gene21193.t1 | MTR_3g054400 | 45.946 | 148 | 70 | 2 | 29 | 166 | 361 | 508 | 9.40e-41 | 145 |
MS.gene21193.t1 | MTR_1g114490 | 68.085 | 94 | 30 | 0 | 74 | 167 | 549 | 642 | 9.03e-39 | 140 |
MS.gene21193.t1 | MTR_8g080240 | 49.286 | 140 | 64 | 1 | 35 | 167 | 3 | 142 | 1.87e-38 | 138 |
MS.gene21193.t1 | MTR_8g080240 | 49.286 | 140 | 64 | 1 | 35 | 167 | 3 | 142 | 3.35e-38 | 138 |
MS.gene21193.t1 | MTR_8g080240 | 49.286 | 140 | 64 | 1 | 35 | 167 | 3 | 142 | 3.82e-38 | 137 |
MS.gene21193.t1 | MTR_7g095080 | 44.444 | 153 | 74 | 1 | 23 | 164 | 35 | 187 | 1.01e-36 | 134 |
MS.gene21193.t1 | MTR_2g015320 | 44.371 | 151 | 72 | 2 | 29 | 167 | 46 | 196 | 3.91e-35 | 129 |
MS.gene21193.t1 | MTR_4g023590 | 37.500 | 160 | 84 | 1 | 25 | 168 | 261 | 420 | 4.72e-29 | 112 |
MS.gene21193.t1 | MTR_8g106630 | 35.366 | 164 | 89 | 3 | 17 | 166 | 257 | 417 | 1.58e-22 | 94.0 |
MS.gene21193.t1 | MTR_8g041990 | 34.416 | 154 | 58 | 3 | 26 | 168 | 96 | 217 | 3.49e-21 | 89.7 |
MS.gene21193.t1 | MTR_1g109170 | 34.146 | 164 | 91 | 2 | 17 | 166 | 313 | 473 | 4.86e-21 | 89.7 |
MS.gene21193.t1 | MTR_1g109170 | 34.146 | 164 | 91 | 2 | 17 | 166 | 313 | 473 | 4.95e-21 | 89.7 |
MS.gene21193.t1 | MTR_1g056490 | 35.135 | 148 | 82 | 1 | 33 | 166 | 228 | 375 | 7.19e-21 | 89.0 |
MS.gene21193.t1 | MTR_4g134790 | 33.951 | 162 | 89 | 2 | 23 | 166 | 592 | 753 | 1.73e-20 | 88.2 |
MS.gene21193.t1 | MTR_8g044260 | 32.530 | 166 | 95 | 3 | 12 | 163 | 228 | 390 | 1.74e-20 | 87.8 |
MS.gene21193.t1 | MTR_4g134790 | 33.951 | 162 | 89 | 2 | 23 | 166 | 592 | 753 | 1.85e-20 | 87.8 |
MS.gene21193.t1 | MTR_1g088590 | 42.553 | 94 | 53 | 1 | 74 | 166 | 75 | 168 | 5.13e-15 | 72.4 |
MS.gene21193.t1 | MTR_5g090430 | 36.538 | 104 | 55 | 2 | 74 | 166 | 237 | 340 | 2.52e-13 | 67.4 |
MS.gene21193.t1 | MTR_5g090430 | 28.662 | 157 | 89 | 4 | 33 | 166 | 71 | 227 | 2.99e-13 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21193.t1 | AT3G62310 | 74.860 | 179 | 27 | 2 | 5 | 167 | 32 | 208 | 2.18e-89 | 271 |
MS.gene21193.t1 | AT3G62310 | 74.860 | 179 | 27 | 2 | 5 | 167 | 32 | 208 | 1.04e-88 | 270 |
MS.gene21193.t1 | AT3G62310 | 74.444 | 180 | 28 | 2 | 5 | 168 | 32 | 209 | 7.64e-87 | 269 |
MS.gene21193.t1 | AT2G47250 | 70.690 | 174 | 35 | 1 | 11 | 168 | 40 | 213 | 1.39e-78 | 248 |
MS.gene21193.t1 | AT4G16680 | 51.701 | 147 | 61 | 1 | 31 | 167 | 210 | 356 | 2.12e-44 | 155 |
MS.gene21193.t1 | AT3G26560 | 51.678 | 149 | 62 | 1 | 29 | 167 | 508 | 656 | 3.64e-44 | 155 |
MS.gene21193.t1 | AT2G35340 | 47.368 | 171 | 75 | 2 | 8 | 163 | 371 | 541 | 3.98e-44 | 155 |
MS.gene21193.t1 | AT2G35340 | 47.368 | 171 | 75 | 2 | 8 | 163 | 233 | 403 | 4.28e-44 | 155 |
MS.gene21193.t1 | AT4G16680 | 51.701 | 147 | 61 | 1 | 31 | 167 | 130 | 276 | 4.79e-44 | 155 |
MS.gene21193.t1 | AT1G32490 | 45.930 | 172 | 77 | 2 | 8 | 163 | 360 | 531 | 1.73e-43 | 154 |
MS.gene21193.t1 | AT1G32490 | 45.930 | 172 | 77 | 2 | 8 | 163 | 370 | 541 | 1.80e-43 | 154 |
MS.gene21193.t1 | AT5G13010 | 43.919 | 148 | 73 | 2 | 29 | 166 | 551 | 698 | 3.66e-39 | 141 |
MS.gene21193.t1 | AT1G26370 | 45.912 | 159 | 74 | 3 | 21 | 168 | 27 | 184 | 3.92e-38 | 138 |
MS.gene21193.t1 | AT4G18465 | 47.020 | 151 | 68 | 3 | 26 | 164 | 38 | 188 | 1.33e-37 | 136 |
MS.gene21193.t1 | AT1G27900 | 45.775 | 142 | 67 | 1 | 36 | 167 | 4 | 145 | 2.17e-37 | 135 |
MS.gene21193.t1 | AT1G27900 | 45.775 | 142 | 67 | 1 | 36 | 167 | 4 | 145 | 2.35e-37 | 135 |
MS.gene21193.t1 | AT1G27900 | 45.455 | 143 | 68 | 1 | 35 | 167 | 3 | 145 | 4.60e-37 | 135 |
MS.gene21193.t1 | AT1G33390 | 37.107 | 159 | 84 | 1 | 25 | 167 | 230 | 388 | 9.41e-27 | 105 |
MS.gene21193.t1 | AT1G33390 | 37.107 | 159 | 84 | 1 | 25 | 167 | 230 | 388 | 9.41e-27 | 105 |
MS.gene21193.t1 | AT2G35920 | 35.811 | 148 | 81 | 1 | 33 | 166 | 167 | 314 | 1.10e-21 | 91.3 |
MS.gene21193.t1 | AT2G35920 | 35.811 | 148 | 81 | 1 | 33 | 166 | 225 | 372 | 1.29e-21 | 91.3 |
MS.gene21193.t1 | AT2G35920 | 35.811 | 148 | 81 | 1 | 33 | 166 | 257 | 404 | 1.32e-21 | 91.3 |
MS.gene21193.t1 | AT1G48650 | 32.727 | 165 | 94 | 2 | 16 | 166 | 282 | 443 | 3.73e-20 | 87.0 |
MS.gene21193.t1 | AT1G48650 | 32.727 | 165 | 94 | 2 | 16 | 166 | 282 | 443 | 3.77e-20 | 87.0 |
MS.gene21193.t1 | AT2G01130 | 33.537 | 164 | 92 | 3 | 17 | 166 | 139 | 299 | 4.21e-20 | 87.0 |
MS.gene21193.t1 | AT2G01130 | 33.537 | 164 | 92 | 3 | 17 | 166 | 204 | 364 | 6.17e-20 | 86.3 |
MS.gene21193.t1 | AT5G04895 | 32.544 | 169 | 97 | 3 | 12 | 166 | 239 | 404 | 2.11e-19 | 85.1 |
MS.gene21193.t1 | AT1G58060 | 32.759 | 174 | 99 | 3 | 12 | 167 | 590 | 763 | 1.61e-18 | 82.4 |
MS.gene21193.t1 | AT2G30800 | 29.747 | 158 | 95 | 3 | 28 | 169 | 179 | 336 | 8.25e-17 | 77.4 |
MS.gene21193.t1 | AT1G06670 | 27.119 | 177 | 113 | 3 | 9 | 169 | 190 | 366 | 7.71e-16 | 74.7 |
MS.gene21193.t1 | AT1G06670 | 27.119 | 177 | 113 | 3 | 9 | 169 | 190 | 366 | 9.73e-16 | 74.3 |
MS.gene21193.t1 | AT1G58050 | 29.775 | 178 | 98 | 4 | 11 | 167 | 572 | 743 | 9.31e-15 | 71.6 |
MS.gene21193.t1 | AT5G10370 | 30.303 | 132 | 81 | 2 | 36 | 156 | 306 | 437 | 1.21e-11 | 62.8 |
MS.gene21193.t1 | AT4G01020 | 30.303 | 132 | 81 | 2 | 36 | 156 | 303 | 434 | 1.61e-11 | 62.4 |
Find 0 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATTATATGAACACTAAT+TGG | - | 11038:800-819 | MS.gene21193:intron | 15.0% |
!!! | ATTTGCTAATTTAATTTCTT+TGG | - | 11038:1186-1205 | MS.gene21193:intron | 15.0% |
!!! | GTTTATATGTTTTTGAATTA+TGG | - | 11038:481-500 | MS.gene21193:CDS | 15.0% |
!!! | TATATGATTTTGTATAGTTT+AGG | + | 11038:767-786 | MS.gene21193:intergenic | 15.0% |
!! | AAAAAAAATAGAGGAGAATT+TGG | - | 11038:1113-1132 | MS.gene21193:intron | 20.0% |
!! | ATAGCTTATGCAAATAAATA+TGG | - | 11038:540-559 | MS.gene21193:CDS | 20.0% |
!! | TAGTTTAGGAACTAAATTAA+TGG | + | 11038:753-772 | MS.gene21193:intergenic | 20.0% |
!!! | TTAATGGATTTCATATACTT+AGG | + | 11038:737-756 | MS.gene21193:intergenic | 20.0% |
! | AAAAAGCTAATTGTAGGATT+GGG | - | 11038:921-940 | MS.gene21193:intron | 25.0% |
! | AAAAATAAGTCAATCCAAAC+AGG | - | 11038:684-703 | MS.gene21193:intron | 25.0% |
! | AAGAAATTGATGTGAGTATT+GGG | - | 11038:1350-1369 | MS.gene21193:intron | 25.0% |
! | AATTACACAACGTAATTTCA+AGG | + | 11038:1450-1469 | MS.gene21193:intergenic | 25.0% |
! | ACATTTCAGAATAAAAGAGA+TGG | + | 11038:1519-1538 | MS.gene21193:intergenic | 25.0% |
! | ACTTAAAGGGATTAAATCTA+TGG | + | 11038:428-447 | MS.gene21193:intergenic | 25.0% |
! | AGTGAATACTAGATATCTTA+TGG | - | 11038:987-1006 | MS.gene21193:intron | 25.0% |
! | AGTGAATACTAGATATGTTA+TGG | - | 11038:950-969 | MS.gene21193:intron | 25.0% |
! | ATATACTTAGGTACTACTTA+AGG | + | 11038:725-744 | MS.gene21193:intergenic | 25.0% |
! | ATTTCAGAATAAAAGAGATG+GGG | + | 11038:1517-1536 | MS.gene21193:intergenic | 25.0% |
! | CATTTCAGAATAAAAGAGAT+GGG | + | 11038:1518-1537 | MS.gene21193:intergenic | 25.0% |
! | GATTTAATCCCTTTAAGTAA+TGG | - | 11038:430-449 | MS.gene21193:CDS | 25.0% |
! | GTGAATACTAGATATCTTAT+GGG | - | 11038:988-1007 | MS.gene21193:intron | 25.0% |
! | GTGAATACTAGATATGTTAT+GGG | - | 11038:951-970 | MS.gene21193:intron | 25.0% |
! | TAAAAAGCTAATTGTAGGAT+TGG | - | 11038:920-939 | MS.gene21193:intron | 25.0% |
! | TGAAGTAAAAAGCTAATTGT+AGG | - | 11038:915-934 | MS.gene21193:intron | 25.0% |
!! | ACTTAAGGTATCAACATTAA+GGG | + | 11038:710-729 | MS.gene21193:intergenic | 25.0% |
!! | TACTTAAGGTATCAACATTA+AGG | + | 11038:711-730 | MS.gene21193:intergenic | 25.0% |
!! | TGGTTATGTTTAGATCATTT+TGG | - | 11038:380-399 | MS.gene21193:intron | 25.0% |
!!! | ATTTCTTTGGTGTGTAATTT+TGG | - | 11038:1199-1218 | MS.gene21193:intron | 25.0% |
!!! | TACTTCGTTTTGTTGTTATT+TGG | - | 11038:360-379 | MS.gene21193:intron | 25.0% |
!!! | TTTCTTTGGTGTGTAATTTT+GGG | - | 11038:1200-1219 | MS.gene21193:intron | 25.0% |
AAAAGCTAATTGTAGGATTG+GGG | - | 11038:922-941 | MS.gene21193:intron | 30.0% | |
AATCAGACTTTGATTCTTGT+TGG | - | 11038:291-310 | MS.gene21193:intron | 30.0% | |
AGAAAATAAGCCAATCCAAA+TGG | + | 11038:508-527 | MS.gene21193:intergenic | 30.0% | |
ATGATATATTCCGCTGAAAT+TGG | - | 11038:1050-1069 | MS.gene21193:intron | 30.0% | |
ATGTATCATTCAAAAGCTTG+TGG | + | 11038:637-656 | MS.gene21193:intergenic | 30.0% | |
GAAAATAAGCCAATCCAAAT+GGG | + | 11038:507-526 | MS.gene21193:intergenic | 30.0% | |
GAAGAAATTGATGTGAGTAT+TGG | - | 11038:1349-1368 | MS.gene21193:intron | 30.0% | |
GAATTGTTATATAAGTGTGC+AGG | - | 11038:1015-1034 | MS.gene21193:intron | 30.0% | |
TTGGCAACTAAAAATTAGAG+TGG | - | 11038:1069-1088 | MS.gene21193:intron | 30.0% | |
! | AGAAATTGATGTGAGTATTG+GGG | - | 11038:1351-1370 | MS.gene21193:intron | 30.0% |
! | AGCTAATTGTTGTCCTTTTA+TGG | - | 11038:1137-1156 | MS.gene21193:intron | 30.0% |
! | CTAATTGTTGTCCTTTTATG+GGG | - | 11038:1139-1158 | MS.gene21193:intron | 30.0% |
! | GCTAATTGTTGTCCTTTTAT+GGG | - | 11038:1138-1157 | MS.gene21193:intron | 30.0% |
! | TTTTTGAATTATGGCCCATT+TGG | - | 11038:490-509 | MS.gene21193:CDS | 30.0% |
!!! | TTTTTAGTTGCCAATTTCAG+CGG | + | 11038:1063-1082 | MS.gene21193:intergenic | 30.0% |
AAAACTAACGGCGGTTTAAT+CGG | - | 11038:144-163 | MS.gene21193:CDS | 35.0% | |
AAACTGCAGCCATTACTTAA+AGG | + | 11038:442-461 | MS.gene21193:intergenic | 35.0% | |
AACTGCAGCCATTACTTAAA+GGG | + | 11038:441-460 | MS.gene21193:intergenic | 35.0% | |
AATCTCATTAACCGTTGGAA+TGG | - | 11038:171-190 | MS.gene21193:CDS | 35.0% | |
ATGTTATGGGATAAGATGCT+TGG | - | 11038:964-983 | MS.gene21193:intron | 35.0% | |
CTATGTAGTCGTTTCATGAT+AGG | - | 11038:848-867 | MS.gene21193:intron | 35.0% | |
GTAACAATCTCATTAACCGT+TGG | - | 11038:166-185 | MS.gene21193:CDS | 35.0% | |
GTTCTCACAAACCAAAATTG+TGG | - | 11038:581-600 | MS.gene21193:CDS | 35.0% | |
TACCATCTGTTAGATATCTG+CGG | + | 11038:1561-1580 | MS.gene21193:intergenic | 35.0% | |
TCAGAAAGAGGATTTCTTGA+AGG | - | 11038:257-276 | MS.gene21193:CDS | 35.0% | |
! | AGCTTATGAAGCCACAATTT+TGG | + | 11038:595-614 | MS.gene21193:intergenic | 35.0% |
! | AGTAAGGTTTTCCATTCCAA+CGG | + | 11038:185-204 | MS.gene21193:intergenic | 35.0% |
! | TGATTCTTGTTGGTGAAAAC+TGG | - | 11038:301-320 | MS.gene21193:intron | 35.0% |
!! | ATCATGAGATTTTGGAGAAG+AGG | - | 11038:214-233 | MS.gene21193:CDS | 35.0% |
!! | GGATTTCTTGAAGGTTTTGA+AGG | - | 11038:266-285 | MS.gene21193:CDS | 35.0% |
!! | TAATGGCTGCAGTTTTAACA+AGG | - | 11038:447-466 | MS.gene21193:CDS | 35.0% |
!!! | GCAAAGGTATCATGAGATTT+TGG | - | 11038:206-225 | MS.gene21193:CDS | 35.0% |
!!! | TTTTAACAAGGCGCTGATTA+GGG | - | 11038:459-478 | MS.gene21193:CDS | 35.0% |
AACCGATCTAACCCCATAAA+AGG | + | 11038:1153-1172 | MS.gene21193:intergenic | 40.0% | |
AGAGGAAAACTCTTCCTGTT+TGG | - | 11038:232-251 | MS.gene21193:CDS | 40.0% | |
ATCAACATTAAGGGCCTGTT+TGG | + | 11038:701-720 | MS.gene21193:intergenic | 40.0% | |
ATCATCTTCTTGCGCTTATC+TGG | + | 11038:1271-1290 | MS.gene21193:intergenic | 40.0% | |
ATCTGTTAGATATCTGCGGT+GGG | + | 11038:1557-1576 | MS.gene21193:intergenic | 40.0% | |
ATGGAAAACCTTACTCGCAA+AGG | - | 11038:190-209 | MS.gene21193:CDS | 40.0% | |
CATCAATTTCTTCAGCCACA+CGG | + | 11038:1342-1361 | MS.gene21193:intergenic | 40.0% | |
GAATTATGGCCCATTTGGAT+TGG | - | 11038:495-514 | MS.gene21193:CDS | 40.0% | |
TCATGATACCTTTGCGAGTA+AGG | + | 11038:201-220 | MS.gene21193:intergenic | 40.0% | |
TGTAGTCGTTTCATGATAGG+TGG | - | 11038:851-870 | MS.gene21193:intron | 40.0% | |
TTCTTGATGAAGCTCACGAA+AGG | - | 11038:1635-1654 | MS.gene21193:CDS | 40.0% | |
TTGAAGATTGCAGTAGTGCA+AGG | - | 11038:1398-1417 | MS.gene21193:intron | 40.0% | |
! | ATGTGCTATTCGGTCTCTTA+AGG | - | 11038:1671-1690 | MS.gene21193:CDS | 40.0% |
! | GTCCTTTTATGGGGTTAGAT+CGG | - | 11038:1148-1167 | MS.gene21193:intron | 40.0% |
! | TTGGCTACTGATGTGCTATT+CGG | - | 11038:1661-1680 | MS.gene21193:CDS | 40.0% |
! | TTGTTGGTGAAAACTGGTAG+TGG | - | 11038:307-326 | MS.gene21193:intron | 40.0% |
!! | ACAGCTTCTAAAACGAACTG+AGG | + | 11038:1235-1254 | MS.gene21193:intergenic | 40.0% |
!! | CAGCTTCTAAAACGAACTGA+GGG | + | 11038:1234-1253 | MS.gene21193:intergenic | 40.0% |
!! | GCTTTTGAGAGAAGCAATGA+CGG | - | 11038:1582-1601 | MS.gene21193:CDS | 40.0% |
!! | TGGTAGTGGAAAAACTACAC+AGG | - | 11038:321-340 | MS.gene21193:intron | 40.0% |
!!! | GTTTTAACAAGGCGCTGATT+AGG | - | 11038:458-477 | MS.gene21193:CDS | 40.0% |
ACTTTGTATCGCTCCAAGAG+TGG | + | 11038:1610-1629 | MS.gene21193:intergenic | 45.0% | |
CACCGCAGATATCTAACAGA+TGG | - | 11038:1556-1575 | MS.gene21193:CDS | 45.0% | |
CATCTGTTAGATATCTGCGG+TGG | + | 11038:1558-1577 | MS.gene21193:intergenic | 45.0% | |
CTAATTGTAGGATTGGGGCT+TGG | - | 11038:927-946 | MS.gene21193:intron | 45.0% | |
TCCTCTTTCTGATGCCAAAC+AGG | + | 11038:249-268 | MS.gene21193:intergenic | 45.0% | |
TCCTGTTTGGCATCAGAAAG+AGG | - | 11038:245-264 | MS.gene21193:CDS | 45.0% | |
TCTGTTAGATATCTGCGGTG+GGG | + | 11038:1556-1575 | MS.gene21193:intergenic | 45.0% | |
TGAAGCTCACGAAAGGACTT+TGG | - | 11038:1642-1661 | MS.gene21193:CDS | 45.0% | |
!! | TGATGTGAGTATTGGGGAAG+AGG | - | 11038:1357-1376 | MS.gene21193:intron | 45.0% |
!! | ATTAAAAAAAAAAAAAATAG+AGG | - | 11038:1104-1123 | MS.gene21193:intron | 5.0% |
CTGTTAGATATCTGCGGTGG+GGG | + | 11038:1555-1574 | MS.gene21193:intergenic | 50.0% | |
!! | AGCAATGACGGATCCACTCT+TGG | - | 11038:1594-1613 | MS.gene21193:CDS | 50.0% |
!! | GTGAGTATTGGGGAAGAGGT+TGG | - | 11038:1361-1380 | MS.gene21193:intron | 50.0% |
CACACGGCGTGAAACAGACA+TGG | + | 11038:1326-1345 | MS.gene21193:intergenic | 55.0% | |
CATGTCTGTTTCACGCCGTG+TGG | - | 11038:1324-1343 | MS.gene21193:intron | 55.0% | |
GACATGGCAGCTACTCTACG+AGG | + | 11038:1310-1329 | MS.gene21193:intergenic | 55.0% | |
GGCAGCTACTCTACGAGGCT+GGG | + | 11038:1305-1324 | MS.gene21193:intergenic | 60.0% | |
TGGCAGCTACTCTACGAGGC+TGG | + | 11038:1306-1325 | MS.gene21193:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
11038 | gene | 138 | 1720 | 138 | ID=MS.gene21193 |
11038 | mRNA | 138 | 1720 | 138 | ID=MS.gene21193.t1;Parent=MS.gene21193 |
11038 | exon | 1546 | 1720 | 1546 | ID=MS.gene21193.t1.exon1;Parent=MS.gene21193.t1 |
11038 | CDS | 1546 | 1720 | 1546 | ID=cds.MS.gene21193.t1;Parent=MS.gene21193.t1 |
11038 | exon | 427 | 610 | 427 | ID=MS.gene21193.t1.exon2;Parent=MS.gene21193.t1 |
11038 | CDS | 427 | 610 | 427 | ID=cds.MS.gene21193.t1;Parent=MS.gene21193.t1 |
11038 | exon | 138 | 294 | 138 | ID=MS.gene21193.t1.exon3;Parent=MS.gene21193.t1 |
11038 | CDS | 138 | 294 | 138 | ID=cds.MS.gene21193.t1;Parent=MS.gene21193.t1 |
Gene Sequence |
Protein sequence |