AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene21193


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21193.t1 MTR_1g086640 87.500 184 7 1 1 168 22 205 3.67e-108 324
MS.gene21193.t1 MTR_3g052610 70.813 209 16 2 2 168 23 228 1.84e-92 283
MS.gene21193.t1 MTR_4g485610 71.512 172 24 3 1 170 23 171 9.52e-74 234
MS.gene21193.t1 MTR_5g075310 51.007 149 62 1 26 163 199 347 1.28e-45 159
MS.gene21193.t1 MTR_6g061840 52.055 146 59 1 29 163 247 392 2.63e-45 157
MS.gene21193.t1 MTR_6g061840 52.055 146 59 1 29 163 247 392 8.20e-45 157
MS.gene21193.t1 MTR_6g061840 52.055 146 59 1 29 163 247 392 9.66e-45 157
MS.gene21193.t1 MTR_1g023985 50.336 149 64 1 29 167 563 711 1.45e-43 154
MS.gene21193.t1 MTR_3g023880 51.748 143 59 1 31 163 407 549 2.80e-43 153
MS.gene21193.t1 MTR_2g098440 46.622 148 69 2 29 166 564 711 5.15e-41 146
MS.gene21193.t1 MTR_3g054400 45.946 148 70 2 29 166 361 508 9.40e-41 145
MS.gene21193.t1 MTR_1g114490 68.085 94 30 0 74 167 549 642 9.03e-39 140
MS.gene21193.t1 MTR_8g080240 49.286 140 64 1 35 167 3 142 1.87e-38 138
MS.gene21193.t1 MTR_8g080240 49.286 140 64 1 35 167 3 142 3.35e-38 138
MS.gene21193.t1 MTR_8g080240 49.286 140 64 1 35 167 3 142 3.82e-38 137
MS.gene21193.t1 MTR_7g095080 44.444 153 74 1 23 164 35 187 1.01e-36 134
MS.gene21193.t1 MTR_2g015320 44.371 151 72 2 29 167 46 196 3.91e-35 129
MS.gene21193.t1 MTR_4g023590 37.500 160 84 1 25 168 261 420 4.72e-29 112
MS.gene21193.t1 MTR_8g106630 35.366 164 89 3 17 166 257 417 1.58e-22 94.0
MS.gene21193.t1 MTR_8g041990 34.416 154 58 3 26 168 96 217 3.49e-21 89.7
MS.gene21193.t1 MTR_1g109170 34.146 164 91 2 17 166 313 473 4.86e-21 89.7
MS.gene21193.t1 MTR_1g109170 34.146 164 91 2 17 166 313 473 4.95e-21 89.7
MS.gene21193.t1 MTR_1g056490 35.135 148 82 1 33 166 228 375 7.19e-21 89.0
MS.gene21193.t1 MTR_4g134790 33.951 162 89 2 23 166 592 753 1.73e-20 88.2
MS.gene21193.t1 MTR_8g044260 32.530 166 95 3 12 163 228 390 1.74e-20 87.8
MS.gene21193.t1 MTR_4g134790 33.951 162 89 2 23 166 592 753 1.85e-20 87.8
MS.gene21193.t1 MTR_1g088590 42.553 94 53 1 74 166 75 168 5.13e-15 72.4
MS.gene21193.t1 MTR_5g090430 36.538 104 55 2 74 166 237 340 2.52e-13 67.4
MS.gene21193.t1 MTR_5g090430 28.662 157 89 4 33 166 71 227 2.99e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21193.t1 AT3G62310 74.860 179 27 2 5 167 32 208 2.18e-89 271
MS.gene21193.t1 AT3G62310 74.860 179 27 2 5 167 32 208 1.04e-88 270
MS.gene21193.t1 AT3G62310 74.444 180 28 2 5 168 32 209 7.64e-87 269
MS.gene21193.t1 AT2G47250 70.690 174 35 1 11 168 40 213 1.39e-78 248
MS.gene21193.t1 AT4G16680 51.701 147 61 1 31 167 210 356 2.12e-44 155
MS.gene21193.t1 AT3G26560 51.678 149 62 1 29 167 508 656 3.64e-44 155
MS.gene21193.t1 AT2G35340 47.368 171 75 2 8 163 371 541 3.98e-44 155
MS.gene21193.t1 AT2G35340 47.368 171 75 2 8 163 233 403 4.28e-44 155
MS.gene21193.t1 AT4G16680 51.701 147 61 1 31 167 130 276 4.79e-44 155
MS.gene21193.t1 AT1G32490 45.930 172 77 2 8 163 360 531 1.73e-43 154
MS.gene21193.t1 AT1G32490 45.930 172 77 2 8 163 370 541 1.80e-43 154
MS.gene21193.t1 AT5G13010 43.919 148 73 2 29 166 551 698 3.66e-39 141
MS.gene21193.t1 AT1G26370 45.912 159 74 3 21 168 27 184 3.92e-38 138
MS.gene21193.t1 AT4G18465 47.020 151 68 3 26 164 38 188 1.33e-37 136
MS.gene21193.t1 AT1G27900 45.775 142 67 1 36 167 4 145 2.17e-37 135
MS.gene21193.t1 AT1G27900 45.775 142 67 1 36 167 4 145 2.35e-37 135
MS.gene21193.t1 AT1G27900 45.455 143 68 1 35 167 3 145 4.60e-37 135
MS.gene21193.t1 AT1G33390 37.107 159 84 1 25 167 230 388 9.41e-27 105
MS.gene21193.t1 AT1G33390 37.107 159 84 1 25 167 230 388 9.41e-27 105
MS.gene21193.t1 AT2G35920 35.811 148 81 1 33 166 167 314 1.10e-21 91.3
MS.gene21193.t1 AT2G35920 35.811 148 81 1 33 166 225 372 1.29e-21 91.3
MS.gene21193.t1 AT2G35920 35.811 148 81 1 33 166 257 404 1.32e-21 91.3
MS.gene21193.t1 AT1G48650 32.727 165 94 2 16 166 282 443 3.73e-20 87.0
MS.gene21193.t1 AT1G48650 32.727 165 94 2 16 166 282 443 3.77e-20 87.0
MS.gene21193.t1 AT2G01130 33.537 164 92 3 17 166 139 299 4.21e-20 87.0
MS.gene21193.t1 AT2G01130 33.537 164 92 3 17 166 204 364 6.17e-20 86.3
MS.gene21193.t1 AT5G04895 32.544 169 97 3 12 166 239 404 2.11e-19 85.1
MS.gene21193.t1 AT1G58060 32.759 174 99 3 12 167 590 763 1.61e-18 82.4
MS.gene21193.t1 AT2G30800 29.747 158 95 3 28 169 179 336 8.25e-17 77.4
MS.gene21193.t1 AT1G06670 27.119 177 113 3 9 169 190 366 7.71e-16 74.7
MS.gene21193.t1 AT1G06670 27.119 177 113 3 9 169 190 366 9.73e-16 74.3
MS.gene21193.t1 AT1G58050 29.775 178 98 4 11 167 572 743 9.31e-15 71.6
MS.gene21193.t1 AT5G10370 30.303 132 81 2 36 156 306 437 1.21e-11 62.8
MS.gene21193.t1 AT4G01020 30.303 132 81 2 36 156 303 434 1.61e-11 62.4

Find 0 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTATATGAACACTAAT+TGG - 11038:800-819 MS.gene21193:intron 15.0%
!!! ATTTGCTAATTTAATTTCTT+TGG - 11038:1186-1205 MS.gene21193:intron 15.0%
!!! GTTTATATGTTTTTGAATTA+TGG - 11038:481-500 MS.gene21193:CDS 15.0%
!!! TATATGATTTTGTATAGTTT+AGG + 11038:767-786 MS.gene21193:intergenic 15.0%
!! AAAAAAAATAGAGGAGAATT+TGG - 11038:1113-1132 MS.gene21193:intron 20.0%
!! ATAGCTTATGCAAATAAATA+TGG - 11038:540-559 MS.gene21193:CDS 20.0%
!! TAGTTTAGGAACTAAATTAA+TGG + 11038:753-772 MS.gene21193:intergenic 20.0%
!!! TTAATGGATTTCATATACTT+AGG + 11038:737-756 MS.gene21193:intergenic 20.0%
! AAAAAGCTAATTGTAGGATT+GGG - 11038:921-940 MS.gene21193:intron 25.0%
! AAAAATAAGTCAATCCAAAC+AGG - 11038:684-703 MS.gene21193:intron 25.0%
! AAGAAATTGATGTGAGTATT+GGG - 11038:1350-1369 MS.gene21193:intron 25.0%
! AATTACACAACGTAATTTCA+AGG + 11038:1450-1469 MS.gene21193:intergenic 25.0%
! ACATTTCAGAATAAAAGAGA+TGG + 11038:1519-1538 MS.gene21193:intergenic 25.0%
! ACTTAAAGGGATTAAATCTA+TGG + 11038:428-447 MS.gene21193:intergenic 25.0%
! AGTGAATACTAGATATCTTA+TGG - 11038:987-1006 MS.gene21193:intron 25.0%
! AGTGAATACTAGATATGTTA+TGG - 11038:950-969 MS.gene21193:intron 25.0%
! ATATACTTAGGTACTACTTA+AGG + 11038:725-744 MS.gene21193:intergenic 25.0%
! ATTTCAGAATAAAAGAGATG+GGG + 11038:1517-1536 MS.gene21193:intergenic 25.0%
! CATTTCAGAATAAAAGAGAT+GGG + 11038:1518-1537 MS.gene21193:intergenic 25.0%
! GATTTAATCCCTTTAAGTAA+TGG - 11038:430-449 MS.gene21193:CDS 25.0%
! GTGAATACTAGATATCTTAT+GGG - 11038:988-1007 MS.gene21193:intron 25.0%
! GTGAATACTAGATATGTTAT+GGG - 11038:951-970 MS.gene21193:intron 25.0%
! TAAAAAGCTAATTGTAGGAT+TGG - 11038:920-939 MS.gene21193:intron 25.0%
! TGAAGTAAAAAGCTAATTGT+AGG - 11038:915-934 MS.gene21193:intron 25.0%
!! ACTTAAGGTATCAACATTAA+GGG + 11038:710-729 MS.gene21193:intergenic 25.0%
!! TACTTAAGGTATCAACATTA+AGG + 11038:711-730 MS.gene21193:intergenic 25.0%
!! TGGTTATGTTTAGATCATTT+TGG - 11038:380-399 MS.gene21193:intron 25.0%
!!! ATTTCTTTGGTGTGTAATTT+TGG - 11038:1199-1218 MS.gene21193:intron 25.0%
!!! TACTTCGTTTTGTTGTTATT+TGG - 11038:360-379 MS.gene21193:intron 25.0%
!!! TTTCTTTGGTGTGTAATTTT+GGG - 11038:1200-1219 MS.gene21193:intron 25.0%
AAAAGCTAATTGTAGGATTG+GGG - 11038:922-941 MS.gene21193:intron 30.0%
AATCAGACTTTGATTCTTGT+TGG - 11038:291-310 MS.gene21193:intron 30.0%
AGAAAATAAGCCAATCCAAA+TGG + 11038:508-527 MS.gene21193:intergenic 30.0%
ATGATATATTCCGCTGAAAT+TGG - 11038:1050-1069 MS.gene21193:intron 30.0%
ATGTATCATTCAAAAGCTTG+TGG + 11038:637-656 MS.gene21193:intergenic 30.0%
GAAAATAAGCCAATCCAAAT+GGG + 11038:507-526 MS.gene21193:intergenic 30.0%
GAAGAAATTGATGTGAGTAT+TGG - 11038:1349-1368 MS.gene21193:intron 30.0%
GAATTGTTATATAAGTGTGC+AGG - 11038:1015-1034 MS.gene21193:intron 30.0%
TTGGCAACTAAAAATTAGAG+TGG - 11038:1069-1088 MS.gene21193:intron 30.0%
! AGAAATTGATGTGAGTATTG+GGG - 11038:1351-1370 MS.gene21193:intron 30.0%
! AGCTAATTGTTGTCCTTTTA+TGG - 11038:1137-1156 MS.gene21193:intron 30.0%
! CTAATTGTTGTCCTTTTATG+GGG - 11038:1139-1158 MS.gene21193:intron 30.0%
! GCTAATTGTTGTCCTTTTAT+GGG - 11038:1138-1157 MS.gene21193:intron 30.0%
! TTTTTGAATTATGGCCCATT+TGG - 11038:490-509 MS.gene21193:CDS 30.0%
!!! TTTTTAGTTGCCAATTTCAG+CGG + 11038:1063-1082 MS.gene21193:intergenic 30.0%
AAAACTAACGGCGGTTTAAT+CGG - 11038:144-163 MS.gene21193:CDS 35.0%
AAACTGCAGCCATTACTTAA+AGG + 11038:442-461 MS.gene21193:intergenic 35.0%
AACTGCAGCCATTACTTAAA+GGG + 11038:441-460 MS.gene21193:intergenic 35.0%
AATCTCATTAACCGTTGGAA+TGG - 11038:171-190 MS.gene21193:CDS 35.0%
ATGTTATGGGATAAGATGCT+TGG - 11038:964-983 MS.gene21193:intron 35.0%
CTATGTAGTCGTTTCATGAT+AGG - 11038:848-867 MS.gene21193:intron 35.0%
GTAACAATCTCATTAACCGT+TGG - 11038:166-185 MS.gene21193:CDS 35.0%
GTTCTCACAAACCAAAATTG+TGG - 11038:581-600 MS.gene21193:CDS 35.0%
TACCATCTGTTAGATATCTG+CGG + 11038:1561-1580 MS.gene21193:intergenic 35.0%
TCAGAAAGAGGATTTCTTGA+AGG - 11038:257-276 MS.gene21193:CDS 35.0%
! AGCTTATGAAGCCACAATTT+TGG + 11038:595-614 MS.gene21193:intergenic 35.0%
! AGTAAGGTTTTCCATTCCAA+CGG + 11038:185-204 MS.gene21193:intergenic 35.0%
! TGATTCTTGTTGGTGAAAAC+TGG - 11038:301-320 MS.gene21193:intron 35.0%
!! ATCATGAGATTTTGGAGAAG+AGG - 11038:214-233 MS.gene21193:CDS 35.0%
!! GGATTTCTTGAAGGTTTTGA+AGG - 11038:266-285 MS.gene21193:CDS 35.0%
!! TAATGGCTGCAGTTTTAACA+AGG - 11038:447-466 MS.gene21193:CDS 35.0%
!!! GCAAAGGTATCATGAGATTT+TGG - 11038:206-225 MS.gene21193:CDS 35.0%
!!! TTTTAACAAGGCGCTGATTA+GGG - 11038:459-478 MS.gene21193:CDS 35.0%
AACCGATCTAACCCCATAAA+AGG + 11038:1153-1172 MS.gene21193:intergenic 40.0%
AGAGGAAAACTCTTCCTGTT+TGG - 11038:232-251 MS.gene21193:CDS 40.0%
ATCAACATTAAGGGCCTGTT+TGG + 11038:701-720 MS.gene21193:intergenic 40.0%
ATCATCTTCTTGCGCTTATC+TGG + 11038:1271-1290 MS.gene21193:intergenic 40.0%
ATCTGTTAGATATCTGCGGT+GGG + 11038:1557-1576 MS.gene21193:intergenic 40.0%
ATGGAAAACCTTACTCGCAA+AGG - 11038:190-209 MS.gene21193:CDS 40.0%
CATCAATTTCTTCAGCCACA+CGG + 11038:1342-1361 MS.gene21193:intergenic 40.0%
GAATTATGGCCCATTTGGAT+TGG - 11038:495-514 MS.gene21193:CDS 40.0%
TCATGATACCTTTGCGAGTA+AGG + 11038:201-220 MS.gene21193:intergenic 40.0%
TGTAGTCGTTTCATGATAGG+TGG - 11038:851-870 MS.gene21193:intron 40.0%
TTCTTGATGAAGCTCACGAA+AGG - 11038:1635-1654 MS.gene21193:CDS 40.0%
TTGAAGATTGCAGTAGTGCA+AGG - 11038:1398-1417 MS.gene21193:intron 40.0%
! ATGTGCTATTCGGTCTCTTA+AGG - 11038:1671-1690 MS.gene21193:CDS 40.0%
! GTCCTTTTATGGGGTTAGAT+CGG - 11038:1148-1167 MS.gene21193:intron 40.0%
! TTGGCTACTGATGTGCTATT+CGG - 11038:1661-1680 MS.gene21193:CDS 40.0%
! TTGTTGGTGAAAACTGGTAG+TGG - 11038:307-326 MS.gene21193:intron 40.0%
!! ACAGCTTCTAAAACGAACTG+AGG + 11038:1235-1254 MS.gene21193:intergenic 40.0%
!! CAGCTTCTAAAACGAACTGA+GGG + 11038:1234-1253 MS.gene21193:intergenic 40.0%
!! GCTTTTGAGAGAAGCAATGA+CGG - 11038:1582-1601 MS.gene21193:CDS 40.0%
!! TGGTAGTGGAAAAACTACAC+AGG - 11038:321-340 MS.gene21193:intron 40.0%
!!! GTTTTAACAAGGCGCTGATT+AGG - 11038:458-477 MS.gene21193:CDS 40.0%
ACTTTGTATCGCTCCAAGAG+TGG + 11038:1610-1629 MS.gene21193:intergenic 45.0%
CACCGCAGATATCTAACAGA+TGG - 11038:1556-1575 MS.gene21193:CDS 45.0%
CATCTGTTAGATATCTGCGG+TGG + 11038:1558-1577 MS.gene21193:intergenic 45.0%
CTAATTGTAGGATTGGGGCT+TGG - 11038:927-946 MS.gene21193:intron 45.0%
TCCTCTTTCTGATGCCAAAC+AGG + 11038:249-268 MS.gene21193:intergenic 45.0%
TCCTGTTTGGCATCAGAAAG+AGG - 11038:245-264 MS.gene21193:CDS 45.0%
TCTGTTAGATATCTGCGGTG+GGG + 11038:1556-1575 MS.gene21193:intergenic 45.0%
TGAAGCTCACGAAAGGACTT+TGG - 11038:1642-1661 MS.gene21193:CDS 45.0%
!! TGATGTGAGTATTGGGGAAG+AGG - 11038:1357-1376 MS.gene21193:intron 45.0%
!! ATTAAAAAAAAAAAAAATAG+AGG - 11038:1104-1123 MS.gene21193:intron 5.0%
CTGTTAGATATCTGCGGTGG+GGG + 11038:1555-1574 MS.gene21193:intergenic 50.0%
!! AGCAATGACGGATCCACTCT+TGG - 11038:1594-1613 MS.gene21193:CDS 50.0%
!! GTGAGTATTGGGGAAGAGGT+TGG - 11038:1361-1380 MS.gene21193:intron 50.0%
CACACGGCGTGAAACAGACA+TGG + 11038:1326-1345 MS.gene21193:intergenic 55.0%
CATGTCTGTTTCACGCCGTG+TGG - 11038:1324-1343 MS.gene21193:intron 55.0%
GACATGGCAGCTACTCTACG+AGG + 11038:1310-1329 MS.gene21193:intergenic 55.0%
GGCAGCTACTCTACGAGGCT+GGG + 11038:1305-1324 MS.gene21193:intergenic 60.0%
TGGCAGCTACTCTACGAGGC+TGG + 11038:1306-1325 MS.gene21193:intergenic 60.0%


Chromosome Type Strat End Strand Name
11038 gene 138 1720 138 ID=MS.gene21193
11038 mRNA 138 1720 138 ID=MS.gene21193.t1;Parent=MS.gene21193
11038 exon 1546 1720 1546 ID=MS.gene21193.t1.exon1;Parent=MS.gene21193.t1
11038 CDS 1546 1720 1546 ID=cds.MS.gene21193.t1;Parent=MS.gene21193.t1
11038 exon 427 610 427 ID=MS.gene21193.t1.exon2;Parent=MS.gene21193.t1
11038 CDS 427 610 427 ID=cds.MS.gene21193.t1;Parent=MS.gene21193.t1
11038 exon 138 294 138 ID=MS.gene21193.t1.exon3;Parent=MS.gene21193.t1
11038 CDS 138 294 138 ID=cds.MS.gene21193.t1;Parent=MS.gene21193.t1
Gene Sequence

>MS.gene21193

ATGGTCAAAACTAACGGCGGTTTAATCGGTAACAATCTCATTAACCGTTGGAATGGAAAACCTTACTCGCAAAGGTATCATGAGATTTTGGAGAAGAGGAAAACTCTTCCTGTTTGGCATCAGAAAGAGGATTTCTTGAAGGTTTTGAAGGATAATCAGACTTTGATTCTTGTTGGTGAAAACTGGTAGTGGAAAAACTACACAGGTTTGTTTCAAAGATTTTACTTCGTTTTGTTGTTATTTGGTTATGTTTAGATCATTTTGGAAATAACTGATTAATGAATAAACCATAGATTTAATCCCTTTAAGTAATGGCTGCAGTTTTAACAAGGCGCTGATTAGGGTTTATATGTTTTTGAATTATGGCCCATTTGGATTGGCTTATTTTCTAGCTTATGAAAAATAGCTTATGCAAATAAATATGGTTTTATTTTAATTCATAAGTTCTCACAAACCAAAATTGTGGCTTCATAAGCTGATTTTTCATAAACTACATCCACAAGCTTTTGAATGATACATAAAAGCTTATTTATTTGCATAAGCTACAAAAATAAGTCAATCCAAACAGGCCCTTAATGTTGATACCTTAAGTAGTACCTAAGTATATGAAATCCATTAATTTAGTTCCTAAACTATACAAAATCATATATAAACACAAACTAAAAATTATATGAACACTAATTGGCGTTGTGTTTAAAATGCAGTCATTACTATGTAGTCGTTTCATGATAGGTGGTGATATTTTTAGCTCAATTTAGCACTAAAAATTGAAGTTAATGAAGTAAAAAGCTAATTGTAGGATTGGGGCTTGGAGTGAATACTAGATATGTTATGGGATAAGATGCTTGGAGTGAATACTAGATATCTTATGGGATAAGAATTGTTATATAAGTGTGCAGGTTTCTAATATTGATGATATATTCCGCTGAAATTGGCAACTAAAAATTAGAGTGGAATTGTATATATATTAAAAAAAAAAAAAATAGAGGAGAATTTGGTAGCTAATTGTTGTCCTTTTATGGGGTTAGATCGGTTATTTAAGTTTGTAATTTGCTAATTTAATTTCTTTGGTGTGTAATTTTGGGTGACAGATCCCTCAGTTCGTTTTAGAAGCTGTTGACTTAGAGACTCCAGATAAGCGCAAGAAGATGATGATTGCATGCACCCAGCCTCGTAGAGTAGCTGCCATGTCTGTTTCACGCCGTGTGGCTGAAGAAATTGATGTGAGTATTGGGGAAGAGGTTGGTTATAGCATCAGATTTGAAGATTGCAGTAGTGCAAGGACAGTTTTGAAGTATGTTTTATTTTTCCTTGAAATTACGTTGTGTAATTGATTTGAAGCTCATTGTTATACTATTTTTACATTAAATTGTTTTCCCCATCTCTTTTATTCTGAAATGTAATGTTTTTTGCTCCCCCACCGCAGATATCTAACAGATGGTATGCTTTTGAGAGAAGCAATGACGGATCCACTCTTGGAGCGATACAAAGTAATAATTCTTGATGAAGCTCACGAAAGGACTTTGGCTACTGATGTGCTATTCGGTCTCTTAAGGAAGTTCTTAAAAACAGACCTGACTTGA

Protein sequence

>MS.gene21193.t1

MVKTNGGLIGNNLINRWNGKPYSQRYHEILEKRKTLPVWHQKEDFLKVLKDNQTLILVEAVDLETPDKRKKMMIACTQPRRVAAMSVSRRVAEEIDVSIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIILDEAHERTLATDVLFGLLRKFLKTDLT