Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21309.t1 | XP_003615315.2 | 95.9 | 395 | 12 | 1 | 245 | 635 | 274 | 668 | 2.80E-214 | 755 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21309.t1 | Q1SGF1 | 89.7 | 195 | 17 | 1 | 56 | 247 | 415 | 609 | 6.0e-96 | 353.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21309.t1 | G7JYF3 | 95.9 | 395 | 12 | 1 | 245 | 635 | 274 | 668 | 2.1e-214 | 755.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049977 | MS.gene21309 | 0.888615 | 5.05E-73 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21309.t1 | MTR_5g066490 | 95.949 | 395 | 12 | 1 | 245 | 635 | 274 | 668 | 0.0 | 784 |
MS.gene21309.t1 | MTR_3g100090 | 63.409 | 440 | 110 | 8 | 245 | 635 | 238 | 675 | 0.0 | 542 |
MS.gene21309.t1 | MTR_4g053530 | 89.744 | 195 | 17 | 1 | 56 | 247 | 430 | 624 | 1.43e-114 | 362 |
MS.gene21309.t1 | MTR_1g061190 | 37.441 | 422 | 227 | 9 | 232 | 635 | 175 | 577 | 4.27e-71 | 246 |
MS.gene21309.t1 | MTR_5g030880 | 76.978 | 139 | 21 | 2 | 501 | 634 | 52 | 184 | 4.28e-62 | 208 |
MS.gene21309.t1 | MTR_1g050690 | 36.139 | 404 | 185 | 12 | 245 | 635 | 96 | 439 | 1.99e-59 | 211 |
MS.gene21309.t1 | MTR_7g064210 | 70.073 | 137 | 6 | 2 | 503 | 635 | 227 | 332 | 4.59e-49 | 177 |
MS.gene21309.t1 | MTR_2g022940 | 60.000 | 145 | 22 | 3 | 495 | 635 | 55 | 167 | 8.40e-42 | 152 |
MS.gene21309.t1 | MTR_8g107000 | 35.242 | 227 | 124 | 7 | 248 | 467 | 146 | 356 | 7.84e-29 | 123 |
MS.gene21309.t1 | MTR_6g079540 | 36.681 | 229 | 118 | 8 | 248 | 467 | 155 | 365 | 1.85e-28 | 122 |
MS.gene21309.t1 | MTR_1g016300 | 37.561 | 205 | 106 | 8 | 249 | 445 | 143 | 333 | 3.40e-28 | 120 |
MS.gene21309.t1 | MTR_1g081790 | 36.585 | 205 | 112 | 7 | 248 | 449 | 153 | 342 | 4.44e-28 | 120 |
MS.gene21309.t1 | MTR_1g081790 | 36.765 | 204 | 111 | 7 | 249 | 449 | 154 | 342 | 4.99e-28 | 120 |
MS.gene21309.t1 | MTR_1g016300 | 37.561 | 205 | 106 | 8 | 249 | 445 | 143 | 333 | 6.95e-28 | 120 |
MS.gene21309.t1 | MTR_4g013300 | 96.078 | 51 | 2 | 0 | 5 | 55 | 314 | 364 | 5.06e-24 | 105 |
MS.gene21309.t1 | MTR_7g070480 | 84.314 | 51 | 8 | 0 | 5 | 55 | 288 | 338 | 1.12e-20 | 95.5 |
MS.gene21309.t1 | MTR_6g079540 | 40.000 | 125 | 66 | 4 | 344 | 467 | 1 | 117 | 9.79e-18 | 87.8 |
MS.gene21309.t1 | MTR_7g096520 | 28.659 | 164 | 111 | 3 | 79 | 239 | 658 | 818 | 3.46e-16 | 83.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21309.t1 | AT4G24480 | 53.202 | 406 | 174 | 4 | 245 | 635 | 287 | 691 | 1.09e-140 | 434 |
MS.gene21309.t1 | AT4G24480 | 53.202 | 406 | 174 | 4 | 245 | 635 | 287 | 691 | 1.38e-140 | 433 |
MS.gene21309.t1 | AT4G24480 | 53.202 | 406 | 174 | 4 | 245 | 635 | 287 | 691 | 1.43e-140 | 433 |
MS.gene21309.t1 | AT5G22470 | 65.641 | 195 | 64 | 1 | 56 | 247 | 429 | 623 | 1.47e-79 | 269 |
MS.gene21309.t1 | AT5G03730 | 36.409 | 401 | 201 | 11 | 245 | 635 | 217 | 573 | 1.65e-64 | 228 |
MS.gene21309.t1 | AT5G03730 | 36.409 | 401 | 201 | 11 | 245 | 635 | 217 | 573 | 1.65e-64 | 228 |
MS.gene21309.t1 | AT1G73660 | 36.321 | 212 | 113 | 7 | 248 | 451 | 191 | 388 | 1.08e-27 | 119 |
MS.gene21309.t1 | AT5G11850 | 32.661 | 248 | 135 | 9 | 206 | 445 | 120 | 343 | 3.41e-27 | 117 |
MS.gene21309.t1 | AT1G18160 | 36.449 | 214 | 110 | 7 | 248 | 451 | 167 | 364 | 1.14e-25 | 113 |
MS.gene21309.t1 | AT1G18160 | 36.449 | 214 | 110 | 7 | 248 | 451 | 167 | 364 | 1.15e-25 | 113 |
MS.gene21309.t1 | AT1G08720 | 31.220 | 205 | 125 | 6 | 247 | 449 | 140 | 330 | 6.47e-23 | 104 |
MS.gene21309.t1 | AT1G08720 | 31.220 | 205 | 125 | 6 | 247 | 449 | 140 | 330 | 7.53e-23 | 104 |
MS.gene21309.t1 | AT3G51670 | 86.275 | 51 | 7 | 0 | 5 | 55 | 272 | 322 | 1.60e-21 | 97.8 |
MS.gene21309.t1 | AT2G31320 | 31.737 | 167 | 108 | 3 | 76 | 239 | 632 | 795 | 1.34e-18 | 90.9 |
Find 157 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTTCAAGATTCACATATTT+TGG | 0.083444 | 5.4:+51872177 | None:intergenic |
AAAACTTGTTGCTATCTTTA+TGG | 0.109717 | 5.4:-51874137 | MS.gene21309:CDS |
AGCAAATCAGTTTCTTTATT+TGG | 0.126811 | 5.4:+51872537 | None:intergenic |
ATCAGACGCATACAAGAAAT+TGG | 0.192805 | 5.4:-51879044 | MS.gene21309:CDS |
GTGAATTCAGAAGCTGGTTT+TGG | 0.240851 | 5.4:+51882205 | None:intergenic |
TCTCATTGTAAGAAATTTCT+TGG | 0.257410 | 5.4:+51872292 | None:intergenic |
TTCTTGTATGCGTCTGATAA+TGG | 0.281098 | 5.4:+51879049 | None:intergenic |
TTTATTTATGCAGGATCATT+TGG | 0.282685 | 5.4:-51872010 | MS.gene21309:intron |
TCTAACAATCAACTGTATTC+AGG | 0.283652 | 5.4:-51873021 | MS.gene21309:intron |
AAACTTGTTGCTATCTTTAT+GGG | 0.295581 | 5.4:-51874136 | MS.gene21309:CDS |
GGGCCAGATTCCTCAATTAA+TGG | 0.297580 | 5.4:-51873159 | MS.gene21309:CDS |
GCGTTAGGTCTTCGGCTGTT+GGG | 0.297595 | 5.4:-51879698 | MS.gene21309:CDS |
ACAACTCTTGTGCTTTATCT+TGG | 0.324215 | 5.4:+51874203 | None:intergenic |
TGAACCCAATGAGAGTTCTT+TGG | 0.343520 | 5.4:-51874272 | MS.gene21309:CDS |
CTCAAATGAGAAATTTGAAA+TGG | 0.348440 | 5.4:+51873111 | None:intergenic |
GAATTTCCTTCCTACATTGA+TGG | 0.349552 | 5.4:-51874308 | MS.gene21309:CDS |
GCCGCATTGCTCAAGGTTGC+AGG | 0.353434 | 5.4:-51873547 | MS.gene21309:CDS |
TGTAATAATGCTTCAGAGGC+TGG | 0.356384 | 5.4:+51872351 | None:intergenic |
CAGAGATTGGCGGATTATAT+AGG | 0.358172 | 5.4:-51873578 | MS.gene21309:CDS |
GGCGTTAGGTCTTCGGCTGT+TGG | 0.363108 | 5.4:-51879699 | MS.gene21309:CDS |
CTACTTGTTCCTGCTTTGAC+TGG | 0.365162 | 5.4:+51872235 | None:intergenic |
GGGGAACCAGGAAATATTAC+TGG | 0.369479 | 5.4:-51873180 | MS.gene21309:CDS |
TTGGCCAGTGATTTGCAAAA+TGG | 0.374646 | 5.4:-51882232 | MS.gene21309:CDS |
AAGGGAAGTTCAGTGGTAAA+TGG | 0.375926 | 5.4:-51872261 | MS.gene21309:CDS |
AGTATGTTGTTGACCTTGTT+GGG | 0.376604 | 5.4:-51873200 | MS.gene21309:CDS |
TTACATGACATTCCATTTGT+TGG | 0.377586 | 5.4:-51872333 | MS.gene21309:CDS |
TTCCTAGGCTGCTGCAGTCT+TGG | 0.381518 | 5.4:-51879140 | MS.gene21309:intron |
ACCATTCCTATTGGAAGGTC+TGG | 0.383471 | 5.4:+51879493 | None:intergenic |
TGAATTCAGGTATGCATTGA+TGG | 0.385839 | 5.4:-51879533 | MS.gene21309:intron |
CACTTCCAAAGAACTCTCAT+TGG | 0.396018 | 5.4:+51874267 | None:intergenic |
GACATGGGGCGTTAGGTCTT+CGG | 0.397363 | 5.4:-51879706 | MS.gene21309:CDS |
TGCAGATCCCCTTGCTCCAC+AGG | 0.400825 | 5.4:+51873888 | None:intergenic |
TCTGGCCCAGTAATATTTCC+TGG | 0.407911 | 5.4:+51873174 | None:intergenic |
ACTGAATCTTTACCAACAAA+TGG | 0.415679 | 5.4:+51872321 | None:intergenic |
TTATTTATGCAGGATCATTT+GGG | 0.416542 | 5.4:-51872009 | MS.gene21309:intron |
TCAGTATGGAGGGTTGAGTT+TGG | 0.416658 | 5.4:-51882251 | MS.gene21309:CDS |
CTAGGCTGCTGCAGTCTTGG+AGG | 0.429963 | 5.4:-51879137 | MS.gene21309:intron |
GTTCCTTCCCTGTGGAGCAA+GGG | 0.432823 | 5.4:-51873896 | MS.gene21309:CDS |
GCTCCATTAATTGAGGAATC+TGG | 0.433747 | 5.4:+51873156 | None:intergenic |
AGATTTGTAACCATTCCTAT+TGG | 0.436403 | 5.4:+51879484 | None:intergenic |
CTCAACCCTCCATACTGAAC+AGG | 0.444430 | 5.4:+51882256 | None:intergenic |
GCTTCAGTTGATAAAAGTCC+TGG | 0.444572 | 5.4:-51872489 | MS.gene21309:CDS |
TGGACTGGCTTGAGATATCA+TGG | 0.445535 | 5.4:-51872143 | MS.gene21309:CDS |
CGACTTCATAACCAGGGTGC+TGG | 0.445882 | 5.4:-51872207 | MS.gene21309:CDS |
TTTGATCTTCACAAGAATAG+AGG | 0.450406 | 5.4:+51873502 | None:intergenic |
GAGGATATTCCTGTTCAGTA+TGG | 0.450984 | 5.4:-51882265 | MS.gene21309:CDS |
GCATCGCGCAATTCTCTTCA+AGG | 0.451312 | 5.4:-51873775 | MS.gene21309:intron |
GAAGTTAGACATGGGGCGTT+AGG | 0.451873 | 5.4:-51879713 | MS.gene21309:CDS |
GCATCAGAGTGAACCATCTC+TGG | 0.456636 | 5.4:+51879284 | None:intergenic |
AGATGGTTAGTAAGCGGTTG+AGG | 0.457571 | 5.4:-51873854 | MS.gene21309:CDS |
ACACTTGCTTCTCACCTCAT+AGG | 0.464089 | 5.4:-51879100 | MS.gene21309:CDS |
ACAATGTCACCAACTTTGAC+AGG | 0.464387 | 5.4:+51878944 | None:intergenic |
GAGTATGTTGTTGACCTTGT+TGG | 0.468190 | 5.4:-51873201 | MS.gene21309:CDS |
GACAAAATAGCATCAGCCTT+GGG | 0.469735 | 5.4:+51879316 | None:intergenic |
CCCGTGGACAAACTACCAAC+TGG | 0.473966 | 5.4:+51873807 | None:intergenic |
GTGAAAGCACTAAAAGAGAC+TGG | 0.474764 | 5.4:-51879340 | MS.gene21309:CDS |
GACTTCATAACCAGGGTGCT+GGG | 0.477831 | 5.4:-51872206 | MS.gene21309:CDS |
TCCAGTTGGTAGTTTGTCCA+CGG | 0.479090 | 5.4:-51873808 | MS.gene21309:CDS |
GGTTCCTTCCCTGTGGAGCA+AGG | 0.481640 | 5.4:-51873897 | MS.gene21309:CDS |
ACTTCCAAAGAACTCTCATT+GGG | 0.483065 | 5.4:+51874268 | None:intergenic |
CGTTAGGTCTTCGGCTGTTG+GGG | 0.483983 | 5.4:-51879697 | MS.gene21309:CDS |
TGTAATGACATGGAGGAAGA+AGG | 0.484330 | 5.4:-51874331 | MS.gene21309:CDS |
TTCTGCTTCTGAGAATGCCT+TGG | 0.485336 | 5.4:-51874179 | MS.gene21309:CDS |
GTGCTTACTTAAATATCTCC+TGG | 0.485884 | 5.4:+51879612 | None:intergenic |
AGGTTGCAGGTACTGTGCTT+CGG | 0.491574 | 5.4:-51873534 | MS.gene21309:CDS |
TTGCCGTGCCGCATTGCTCA+AGG | 0.492912 | 5.4:-51873554 | MS.gene21309:CDS |
TACAATGAGATCATTGCAAA+GGG | 0.494339 | 5.4:-51872279 | MS.gene21309:CDS |
GTTGACCTTGTTGGGGAACC+AGG | 0.495325 | 5.4:-51873192 | MS.gene21309:CDS |
TCAGACGCATACAAGAAATT+GGG | 0.496775 | 5.4:-51879043 | MS.gene21309:CDS |
CAGGTATGCATTGATGGAGA+TGG | 0.498461 | 5.4:-51879527 | MS.gene21309:CDS |
ATCAAAGAACGCATTGGTGC+TGG | 0.498755 | 5.4:-51872108 | MS.gene21309:intron |
ACACTGTAAACTTGAGCCTA+TGG | 0.500559 | 5.4:-51879663 | MS.gene21309:CDS |
GGGTTGCTCAATTTCTCCAC+CGG | 0.500574 | 5.4:-51879023 | MS.gene21309:CDS |
GCTTTAAGCGCCATCAATGT+AGG | 0.504010 | 5.4:+51874298 | None:intergenic |
GACTCTCCAGACCTTCCAAT+AGG | 0.505455 | 5.4:-51879499 | MS.gene21309:CDS |
ACCAAGTGAGGAAGTTCTGT+TGG | 0.508335 | 5.4:-51879377 | MS.gene21309:intron |
TTGACAGTGAATTCAGAAGC+TGG | 0.508842 | 5.4:+51882199 | None:intergenic |
TTCCTTCCCTGTGGAGCAAG+GGG | 0.509142 | 5.4:-51873895 | MS.gene21309:CDS |
TATGAAGGTTATGTGCAGCC+AGG | 0.510940 | 5.4:-51879630 | MS.gene21309:CDS |
TAGGCTGCTGCAGTCTTGGA+GGG | 0.513432 | 5.4:-51879136 | MS.gene21309:CDS |
CACATATGCTCCATTAATTG+AGG | 0.521191 | 5.4:+51873149 | None:intergenic |
TTGTAACCATTCCTATTGGA+AGG | 0.524539 | 5.4:+51879488 | None:intergenic |
AGACAAAATAGCATCAGCCT+TGG | 0.530307 | 5.4:+51879315 | None:intergenic |
GTAATAATGCTTCAGAGGCT+GGG | 0.531732 | 5.4:+51872352 | None:intergenic |
GCTTCTGAATTCACTGTCAA+AGG | 0.532398 | 5.4:-51882196 | MS.gene21309:CDS |
CAGTGTGTTGTGCTTCCAGT+TGG | 0.532963 | 5.4:-51873822 | MS.gene21309:CDS |
TATGACATTGAATAGGATGA+TGG | 0.534805 | 5.4:-51879740 | MS.gene21309:intron |
TTACAATGAGATCATTGCAA+AGG | 0.535482 | 5.4:-51872280 | MS.gene21309:CDS |
TTGGTGCTCGTTGAAAAGCT+TGG | 0.535539 | 5.4:-51874160 | MS.gene21309:CDS |
GTAATGACATGGAGGAAGAA+GGG | 0.538488 | 5.4:-51874330 | MS.gene21309:CDS |
TACTGAACAGGAATATCCTC+AGG | 0.539885 | 5.4:+51882268 | None:intergenic |
TTGTGAAGATCAAAGATGAC+AGG | 0.548212 | 5.4:-51873493 | MS.gene21309:CDS |
ACATATGAACCTGTCAAAGT+TGG | 0.551605 | 5.4:-51878953 | MS.gene21309:CDS |
AGCCAGTCCATTGCTAGTGA+TGG | 0.551807 | 5.4:+51872156 | None:intergenic |
AAATGGTATCCAGTCAAAGC+AGG | 0.553596 | 5.4:-51872244 | MS.gene21309:CDS |
CCAGTTGGTAGTTTGTCCAC+GGG | 0.554032 | 5.4:-51873807 | MS.gene21309:CDS |
TACATTGATGGCGCTTAAAG+CGG | 0.556772 | 5.4:-51874296 | MS.gene21309:CDS |
AGGTATGCATTGATGGAGAT+GGG | 0.557209 | 5.4:-51879526 | MS.gene21309:CDS |
TTTGTTGATGCAGAGATTGG+CGG | 0.559377 | 5.4:-51873588 | MS.gene21309:intron |
GATATTCCTGTTCAGTATGG+AGG | 0.561935 | 5.4:-51882262 | MS.gene21309:CDS |
TCTTGAACCATCACTAGCAA+TGG | 0.564083 | 5.4:-51872163 | MS.gene21309:CDS |
TGAGAAATTTGAAATGGAGA+AGG | 0.565947 | 5.4:+51873117 | None:intergenic |
AACCATCACTAGCAATGGAC+TGG | 0.566572 | 5.4:-51872158 | MS.gene21309:CDS |
CTGAATTCACTGTCAAAGGA+GGG | 0.571568 | 5.4:-51882192 | MS.gene21309:CDS |
TACACTGAAAAGATTGCGGA+TGG | 0.572440 | 5.4:-51874397 | MS.gene21309:CDS |
TTCATAAAATTTGCAACCAT+AGG | 0.573779 | 5.4:+51879647 | None:intergenic |
GGACAGTGTACCGTGCTGAA+TGG | 0.576758 | 5.4:-51871988 | MS.gene21309:CDS |
GTATGTTGTTGACCTTGTTG+GGG | 0.577494 | 5.4:-51873199 | MS.gene21309:CDS |
TTACACATCACCCACAAGTA+CGG | 0.578733 | 5.4:+51874349 | None:intergenic |
ATATTCCTGTTCAGTATGGA+GGG | 0.579611 | 5.4:-51882261 | MS.gene21309:CDS |
CAACCTTGAGCAATGCGGCA+CGG | 0.579967 | 5.4:+51873551 | None:intergenic |
AACTTGTTGCTATCTTTATG+GGG | 0.581303 | 5.4:-51874135 | MS.gene21309:intron |
TCTGAATTCACTGTCAAAGG+AGG | 0.582116 | 5.4:-51882193 | MS.gene21309:CDS |
ACTAAAAGAGACTGGGCCCA+AGG | 0.585044 | 5.4:-51879332 | MS.gene21309:CDS |
ATCCCCTTGCTCCACAGGGA+AGG | 0.586648 | 5.4:+51873893 | None:intergenic |
TCCAGACCTTCCAATAGGAA+TGG | 0.589141 | 5.4:-51879494 | MS.gene21309:CDS |
GTCATGTAATAATGCTTCAG+AGG | 0.593398 | 5.4:+51872347 | None:intergenic |
TATTTCCTGGTTCCCCAACA+AGG | 0.595976 | 5.4:+51873187 | None:intergenic |
TGATTAAAACTTATAACTTG+AGG | 0.596824 | 5.4:+51873051 | None:intergenic |
CTGCGGATCAAAGAACGCAT+TGG | 0.597029 | 5.4:-51872114 | MS.gene21309:CDS |
AGCCACTCATATCTCCTATG+AGG | 0.600202 | 5.4:+51879086 | None:intergenic |
TGAATTCACTGTCAAAGGAG+GGG | 0.606287 | 5.4:-51882191 | MS.gene21309:CDS |
AGAAAATCGACTTCATAACC+AGG | 0.610279 | 5.4:-51872214 | MS.gene21309:CDS |
GTTTGTCCACGGGACTCTGT+AGG | 0.613139 | 5.4:-51873797 | MS.gene21309:CDS |
GCAGATCCCCTTGCTCCACA+GGG | 0.614608 | 5.4:+51873889 | None:intergenic |
TGGGAATGAATCCGTACTTG+TGG | 0.616564 | 5.4:-51874360 | MS.gene21309:CDS |
GATGCTGCATCATCCACGTA+GGG | 0.620434 | 5.4:+51873075 | None:intergenic |
AAGATGACAGGCAACTGTCA+AGG | 0.620877 | 5.4:-51873481 | MS.gene21309:intron |
TCACTCTGATGCACTCCACA+AGG | 0.623588 | 5.4:-51879273 | MS.gene21309:CDS |
GGTCAGATTCATTAGACCTG+AGG | 0.624923 | 5.4:-51882284 | MS.gene21309:intron |
GGGAACCAGGAAATATTACT+GGG | 0.628936 | 5.4:-51873179 | MS.gene21309:CDS |
CTGATCCATGCCATTCAGCA+CGG | 0.630160 | 5.4:+51871978 | None:intergenic |
CATTGCAAAGGGAAGTTCAG+TGG | 0.632388 | 5.4:-51872268 | MS.gene21309:CDS |
AGATATCATGGGATGAGCTG+CGG | 0.633760 | 5.4:-51872131 | MS.gene21309:CDS |
TTGGAATATCCCCAGCACCC+TGG | 0.634335 | 5.4:+51872196 | None:intergenic |
GATGGAGTTGAAGTTAGACA+TGG | 0.635519 | 5.4:-51879722 | MS.gene21309:CDS |
TAAGCGCCATCAATGTAGGA+AGG | 0.635856 | 5.4:+51874302 | None:intergenic |
TGAAAGCACTAAAAGAGACT+GGG | 0.637617 | 5.4:-51879339 | MS.gene21309:CDS |
ACTTCATAACCAGGGTGCTG+GGG | 0.638614 | 5.4:-51872205 | MS.gene21309:CDS |
ATGGAGTTGAAGTTAGACAT+GGG | 0.639170 | 5.4:-51879721 | MS.gene21309:CDS |
GGTGGAAGATGGTTAGTAAG+CGG | 0.644238 | 5.4:-51873860 | MS.gene21309:CDS |
GGGAATGAATCCGTACTTGT+GGG | 0.644522 | 5.4:-51874359 | MS.gene21309:CDS |
GTGTACCGTGCTGAATGGCA+TGG | 0.657179 | 5.4:-51871983 | MS.gene21309:CDS |
GATACTTATTGATAGACGCG+AGG | 0.660358 | 5.4:-51874245 | MS.gene21309:CDS |
AAAATCTCAATCGCCCTACG+TGG | 0.662864 | 5.4:-51873088 | MS.gene21309:CDS |
GTCGTACACTGAAAAGATTG+CGG | 0.664774 | 5.4:-51874401 | MS.gene21309:CDS |
GAAAATCGACTTCATAACCA+GGG | 0.668500 | 5.4:-51872213 | MS.gene21309:CDS |
AGATGCTGCATCATCCACGT+AGG | 0.674401 | 5.4:+51873074 | None:intergenic |
GAAAAGGGGTTCCTTCCCTG+TGG | 0.675715 | 5.4:-51873904 | MS.gene21309:intron |
GTGGGTGATGTGTAATGACA+TGG | 0.677597 | 5.4:-51874341 | MS.gene21309:CDS |
TGGAGTTGAAGTTAGACATG+GGG | 0.691220 | 5.4:-51879720 | MS.gene21309:CDS |
TCAGTTGATAAAAGTCCTGG+AGG | 0.696117 | 5.4:-51872486 | MS.gene21309:intron |
GGACTGGCTTGAGATATCAT+GGG | 0.699073 | 5.4:-51872142 | MS.gene21309:CDS |
CACCTCATAGGAGATATGAG+TGG | 0.711386 | 5.4:-51879088 | MS.gene21309:CDS |
ACCTGCAACCTTGAGCAATG+CGG | 0.722322 | 5.4:+51873546 | None:intergenic |
GGTGATGTGTAATGACATGG+AGG | 0.730059 | 5.4:-51874338 | MS.gene21309:CDS |
GCGATGCCTACAGAGTCCCG+TGG | 0.768685 | 5.4:+51873791 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 51871979 | 51882884 | 51871979 | ID=MS.gene21309 |
chr5.4 | mRNA | 51871979 | 51882884 | 51871979 | ID=MS.gene21309.t1;Parent=MS.gene21309 |
chr5.4 | exon | 51882862 | 51882884 | 51882862 | ID=MS.gene21309.t1.exon1;Parent=MS.gene21309.t1 |
chr5.4 | CDS | 51882862 | 51882884 | 51882862 | ID=cds.MS.gene21309.t1;Parent=MS.gene21309.t1 |
chr5.4 | exon | 51882159 | 51882300 | 51882159 | ID=MS.gene21309.t1.exon2;Parent=MS.gene21309.t1 |
chr5.4 | CDS | 51882159 | 51882300 | 51882159 | ID=cds.MS.gene21309.t1;Parent=MS.gene21309.t1 |
chr5.4 | exon | 51879620 | 51879747 | 51879620 | ID=MS.gene21309.t1.exon3;Parent=MS.gene21309.t1 |
chr5.4 | CDS | 51879620 | 51879747 | 51879620 | ID=cds.MS.gene21309.t1;Parent=MS.gene21309.t1 |
chr5.4 | exon | 51879470 | 51879546 | 51879470 | ID=MS.gene21309.t1.exon4;Parent=MS.gene21309.t1 |
chr5.4 | CDS | 51879470 | 51879546 | 51879470 | ID=cds.MS.gene21309.t1;Parent=MS.gene21309.t1 |
chr5.4 | exon | 51879234 | 51879385 | 51879234 | ID=MS.gene21309.t1.exon5;Parent=MS.gene21309.t1 |
chr5.4 | CDS | 51879234 | 51879385 | 51879234 | ID=cds.MS.gene21309.t1;Parent=MS.gene21309.t1 |
chr5.4 | exon | 51878946 | 51879155 | 51878946 | ID=MS.gene21309.t1.exon6;Parent=MS.gene21309.t1 |
chr5.4 | CDS | 51878946 | 51879155 | 51878946 | ID=cds.MS.gene21309.t1;Parent=MS.gene21309.t1 |
chr5.4 | exon | 51874136 | 51874437 | 51874136 | ID=MS.gene21309.t1.exon7;Parent=MS.gene21309.t1 |
chr5.4 | CDS | 51874136 | 51874437 | 51874136 | ID=cds.MS.gene21309.t1;Parent=MS.gene21309.t1 |
chr5.4 | exon | 51873776 | 51873920 | 51873776 | ID=MS.gene21309.t1.exon8;Parent=MS.gene21309.t1 |
chr5.4 | CDS | 51873776 | 51873920 | 51873776 | ID=cds.MS.gene21309.t1;Parent=MS.gene21309.t1 |
chr5.4 | exon | 51873482 | 51873597 | 51873482 | ID=MS.gene21309.t1.exon9;Parent=MS.gene21309.t1 |
chr5.4 | CDS | 51873482 | 51873597 | 51873482 | ID=cds.MS.gene21309.t1;Parent=MS.gene21309.t1 |
chr5.4 | exon | 51873022 | 51873224 | 51873022 | ID=MS.gene21309.t1.exon10;Parent=MS.gene21309.t1 |
chr5.4 | CDS | 51873022 | 51873224 | 51873022 | ID=cds.MS.gene21309.t1;Parent=MS.gene21309.t1 |
chr5.4 | exon | 51872487 | 51872579 | 51872487 | ID=MS.gene21309.t1.exon11;Parent=MS.gene21309.t1 |
chr5.4 | CDS | 51872487 | 51872579 | 51872487 | ID=cds.MS.gene21309.t1;Parent=MS.gene21309.t1 |
chr5.4 | exon | 51872109 | 51872381 | 51872109 | ID=MS.gene21309.t1.exon12;Parent=MS.gene21309.t1 |
chr5.4 | CDS | 51872109 | 51872381 | 51872109 | ID=cds.MS.gene21309.t1;Parent=MS.gene21309.t1 |
chr5.4 | exon | 51871979 | 51872019 | 51871979 | ID=MS.gene21309.t1.exon13;Parent=MS.gene21309.t1 |
chr5.4 | CDS | 51871979 | 51872019 | 51871979 | ID=cds.MS.gene21309.t1;Parent=MS.gene21309.t1 |
Gene Sequence |
Protein sequence |