Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21361.t1 | XP_003591647.1 | 89.4 | 180 | 13 | 2 | 1 | 175 | 1 | 179 | 1.30E-81 | 312.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21361.t1 | O82081 | 43.6 | 117 | 65 | 1 | 2 | 117 | 5 | 121 | 3.9e-21 | 102.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21361.t1 | G7I2Z3 | 89.4 | 180 | 13 | 2 | 1 | 175 | 1 | 179 | 9.7e-82 | 312.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056677 | MS.gene21361 | 0.826749 | 2.29E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene069866 | MS.gene21361 | PPI |
| MS.gene85147 | MS.gene21361 | PPI |
| MS.gene21361 | MS.gene36349 | PPI |
| MS.gene76531 | MS.gene21361 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21361.t1 | MTR_1g090190 | 89.444 | 180 | 13 | 2 | 1 | 175 | 1 | 179 | 1.99e-107 | 305 |
| MS.gene21361.t1 | MTR_3g099580 | 42.609 | 115 | 65 | 1 | 4 | 118 | 8 | 121 | 5.91e-28 | 103 |
| MS.gene21361.t1 | MTR_2g088990 | 39.474 | 114 | 64 | 2 | 3 | 115 | 9 | 118 | 8.68e-28 | 103 |
| MS.gene21361.t1 | MTR_8g007035 | 40.517 | 116 | 61 | 2 | 4 | 117 | 11 | 120 | 3.40e-27 | 101 |
| MS.gene21361.t1 | MTR_3g099980 | 40.171 | 117 | 65 | 3 | 5 | 119 | 11 | 124 | 6.05e-26 | 99.0 |
| MS.gene21361.t1 | MTR_3g099680 | 40.171 | 117 | 65 | 3 | 5 | 119 | 11 | 124 | 8.44e-26 | 98.6 |
| MS.gene21361.t1 | MTR_8g007020 | 32.022 | 178 | 101 | 4 | 4 | 167 | 11 | 182 | 1.14e-25 | 97.4 |
| MS.gene21361.t1 | MTR_3g099570 | 34.752 | 141 | 83 | 2 | 5 | 145 | 11 | 142 | 2.97e-25 | 96.3 |
| MS.gene21361.t1 | MTR_6g080660 | 36.441 | 118 | 71 | 1 | 1 | 118 | 10 | 123 | 2.61e-24 | 94.7 |
| MS.gene21361.t1 | MTR_5g006040 | 30.435 | 161 | 104 | 3 | 1 | 153 | 4 | 164 | 2.18e-23 | 91.7 |
| MS.gene21361.t1 | MTR_3g099540 | 35.938 | 128 | 79 | 1 | 1 | 128 | 8 | 132 | 5.41e-22 | 86.7 |
| MS.gene21361.t1 | MTR_4g114870 | 42.574 | 101 | 53 | 2 | 22 | 117 | 190 | 290 | 7.70e-22 | 90.9 |
| MS.gene21361.t1 | MTR_4g114870 | 33.824 | 136 | 83 | 3 | 4 | 134 | 10 | 143 | 2.29e-16 | 75.9 |
| MS.gene21361.t1 | MTR_6g013420 | 38.971 | 136 | 77 | 4 | 4 | 136 | 19 | 151 | 3.03e-21 | 85.9 |
| MS.gene21361.t1 | MTR_1g104800 | 34.167 | 120 | 75 | 3 | 1 | 117 | 4 | 122 | 5.78e-21 | 85.1 |
| MS.gene21361.t1 | MTR_6g013200 | 33.962 | 159 | 95 | 5 | 4 | 157 | 16 | 169 | 6.88e-21 | 84.7 |
| MS.gene21361.t1 | MTR_6g023760 | 39.394 | 99 | 59 | 1 | 20 | 117 | 23 | 121 | 6.21e-20 | 82.4 |
| MS.gene21361.t1 | MTR_1g112700 | 34.058 | 138 | 79 | 4 | 4 | 130 | 14 | 150 | 1.91e-18 | 78.6 |
| MS.gene21361.t1 | MTR_2g025580 | 28.994 | 169 | 113 | 5 | 4 | 170 | 8 | 171 | 2.40e-18 | 78.2 |
| MS.gene21361.t1 | MTR_8g099220 | 35.938 | 128 | 69 | 4 | 2 | 118 | 3 | 128 | 5.72e-17 | 73.2 |
| MS.gene21361.t1 | MTR_8g463180 | 36.364 | 121 | 73 | 3 | 1 | 117 | 1 | 121 | 6.81e-17 | 76.6 |
| MS.gene21361.t1 | MTR_8g086360 | 33.571 | 140 | 85 | 4 | 4 | 136 | 6 | 144 | 6.89e-17 | 74.7 |
| MS.gene21361.t1 | MTR_0334s0010 | 34.127 | 126 | 75 | 2 | 1 | 118 | 1 | 126 | 1.15e-16 | 74.3 |
| MS.gene21361.t1 | MTR_6g022170 | 38.462 | 104 | 58 | 2 | 19 | 117 | 30 | 132 | 1.79e-16 | 73.2 |
| MS.gene21361.t1 | MTR_8g089110 | 36.842 | 114 | 68 | 3 | 4 | 116 | 9 | 119 | 4.47e-16 | 70.9 |
| MS.gene21361.t1 | MTR_1g014120 | 32.867 | 143 | 83 | 5 | 4 | 135 | 9 | 149 | 1.02e-15 | 71.6 |
| MS.gene21361.t1 | MTR_1g090420 | 30.263 | 152 | 96 | 4 | 5 | 152 | 10 | 155 | 4.74e-15 | 70.5 |
| MS.gene21361.t1 | MTR_4g130780 | 31.061 | 132 | 83 | 4 | 5 | 128 | 9 | 140 | 9.55e-15 | 68.9 |
| MS.gene21361.t1 | MTR_8g094990 | 32.593 | 135 | 82 | 4 | 4 | 130 | 7 | 140 | 1.44e-14 | 70.1 |
| MS.gene21361.t1 | MTR_4g130800 | 34.454 | 119 | 70 | 4 | 5 | 115 | 9 | 127 | 1.75e-14 | 69.7 |
| MS.gene21361.t1 | MTR_2g090575 | 33.577 | 137 | 80 | 4 | 4 | 130 | 7 | 142 | 1.94e-14 | 70.1 |
| MS.gene21361.t1 | MTR_6g083240 | 30.818 | 159 | 96 | 6 | 20 | 170 | 24 | 176 | 5.31e-14 | 66.6 |
| MS.gene21361.t1 | MTR_7g086100 | 29.268 | 123 | 84 | 2 | 2 | 121 | 5 | 127 | 5.60e-14 | 67.8 |
| MS.gene21361.t1 | MTR_3g089035 | 35.294 | 102 | 62 | 3 | 17 | 117 | 27 | 125 | 9.60e-14 | 64.7 |
| MS.gene21361.t1 | MTR_4g124280 | 33.333 | 138 | 73 | 4 | 20 | 143 | 22 | 154 | 1.14e-13 | 67.0 |
| MS.gene21361.t1 | MTR_7g086090 | 29.310 | 116 | 81 | 1 | 4 | 118 | 7 | 122 | 1.99e-13 | 66.2 |
| MS.gene21361.t1 | MTR_2g101300 | 29.787 | 141 | 89 | 4 | 9 | 142 | 11 | 148 | 2.79e-13 | 65.1 |
| MS.gene21361.t1 | MTR_1g077790 | 36.190 | 105 | 61 | 3 | 23 | 121 | 29 | 133 | 3.40e-13 | 65.1 |
| MS.gene21361.t1 | MTR_4g081100 | 32.710 | 107 | 67 | 2 | 19 | 120 | 28 | 134 | 4.01e-13 | 65.1 |
| MS.gene21361.t1 | MTR_1g105130 | 28.926 | 121 | 84 | 2 | 3 | 121 | 5 | 125 | 4.14e-13 | 63.9 |
| MS.gene21361.t1 | MTR_1g105120 | 28.926 | 121 | 84 | 2 | 3 | 121 | 5 | 125 | 4.14e-13 | 63.9 |
| MS.gene21361.t1 | MTR_7g086160 | 31.405 | 121 | 80 | 3 | 4 | 121 | 7 | 127 | 4.60e-13 | 63.9 |
| MS.gene21361.t1 | MTR_2g079030 | 33.333 | 132 | 83 | 4 | 2 | 130 | 5 | 134 | 4.94e-13 | 66.6 |
| MS.gene21361.t1 | MTR_3g105930 | 33.628 | 113 | 67 | 3 | 26 | 130 | 31 | 143 | 8.09e-13 | 63.5 |
| MS.gene21361.t1 | MTR_2g043730 | 36.207 | 116 | 68 | 4 | 4 | 116 | 11 | 123 | 8.60e-13 | 62.4 |
| MS.gene21361.t1 | MTR_4g077787 | 33.333 | 123 | 74 | 3 | 4 | 119 | 12 | 133 | 1.05e-12 | 63.5 |
| MS.gene21361.t1 | MTR_4g130800 | 36.364 | 99 | 57 | 3 | 23 | 115 | 28 | 126 | 1.18e-12 | 64.7 |
| MS.gene21361.t1 | MTR_4g078410 | 30.597 | 134 | 86 | 3 | 4 | 134 | 6 | 135 | 2.58e-12 | 62.4 |
| MS.gene21361.t1 | MTR_2g083250 | 34.259 | 108 | 64 | 3 | 20 | 120 | 23 | 130 | 3.07e-12 | 63.2 |
| MS.gene21361.t1 | MTR_4g111640 | 24.294 | 177 | 118 | 4 | 4 | 173 | 12 | 179 | 4.13e-12 | 61.6 |
| MS.gene21361.t1 | MTR_7g086280 | 28.448 | 116 | 82 | 1 | 4 | 118 | 7 | 122 | 9.94e-12 | 60.8 |
| MS.gene21361.t1 | MTR_7g086140 | 30.000 | 120 | 82 | 2 | 4 | 121 | 7 | 126 | 1.18e-11 | 60.1 |
| MS.gene21361.t1 | MTR_7g086190 | 30.000 | 120 | 82 | 2 | 4 | 121 | 7 | 126 | 1.18e-11 | 60.1 |
| MS.gene21361.t1 | MTR_3g089005 | 30.508 | 118 | 77 | 4 | 1 | 116 | 10 | 124 | 2.81e-11 | 58.5 |
| MS.gene21361.t1 | MTR_8g095013 | 31.356 | 118 | 76 | 3 | 4 | 117 | 7 | 123 | 4.20e-11 | 60.5 |
| MS.gene21361.t1 | MTR_8g088830 | 36.364 | 99 | 58 | 4 | 20 | 116 | 25 | 120 | 4.50e-11 | 57.8 |
| MS.gene21361.t1 | MTR_5g088000 | 27.007 | 137 | 93 | 4 | 4 | 137 | 2 | 134 | 5.76e-11 | 57.8 |
| MS.gene21361.t1 | MTR_7g086230 | 26.724 | 116 | 84 | 1 | 4 | 118 | 7 | 122 | 8.04e-11 | 58.2 |
| MS.gene21361.t1 | MTR_4g007250 | 30.693 | 101 | 68 | 2 | 19 | 118 | 25 | 124 | 8.06e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21361.t1 | AT5G07475 | 50.314 | 159 | 75 | 3 | 1 | 158 | 7 | 162 | 2.31e-49 | 158 |
| MS.gene21361.t1 | AT2G32300 | 43.590 | 117 | 65 | 1 | 2 | 117 | 5 | 121 | 1.67e-30 | 112 |
| MS.gene21361.t1 | AT2G32300 | 43.590 | 117 | 65 | 1 | 2 | 117 | 35 | 151 | 5.46e-30 | 111 |
| MS.gene21361.t1 | AT2G31050 | 40.310 | 129 | 70 | 4 | 4 | 130 | 13 | 136 | 7.13e-24 | 93.2 |
| MS.gene21361.t1 | AT5G26330 | 39.604 | 101 | 58 | 2 | 20 | 117 | 21 | 121 | 3.68e-21 | 85.9 |
| MS.gene21361.t1 | AT3G60270 | 38.776 | 98 | 60 | 0 | 20 | 117 | 23 | 120 | 4.36e-21 | 85.5 |
| MS.gene21361.t1 | AT3G27200 | 35.833 | 120 | 73 | 3 | 1 | 117 | 3 | 121 | 4.52e-21 | 85.1 |
| MS.gene21361.t1 | AT2G25060 | 38.411 | 151 | 71 | 5 | 4 | 136 | 16 | 162 | 8.75e-21 | 84.7 |
| MS.gene21361.t1 | AT2G26720 | 36.207 | 116 | 69 | 3 | 4 | 117 | 13 | 125 | 9.19e-21 | 85.1 |
| MS.gene21361.t1 | AT5G25090 | 38.596 | 114 | 65 | 2 | 9 | 117 | 13 | 126 | 3.01e-20 | 83.6 |
| MS.gene21361.t1 | AT4G31840 | 34.752 | 141 | 82 | 5 | 5 | 135 | 6 | 146 | 1.12e-17 | 76.6 |
| MS.gene21361.t1 | AT3G60280 | 37.755 | 98 | 61 | 0 | 20 | 117 | 21 | 118 | 1.14e-17 | 77.4 |
| MS.gene21361.t1 | AT3G20570 | 40.000 | 105 | 59 | 2 | 20 | 120 | 27 | 131 | 2.31e-17 | 76.3 |
| MS.gene21361.t1 | AT1G72230 | 30.508 | 118 | 80 | 1 | 31 | 146 | 31 | 148 | 9.21e-17 | 74.3 |
| MS.gene21361.t1 | AT3G17675 | 30.769 | 117 | 78 | 2 | 4 | 117 | 11 | 127 | 1.02e-16 | 72.8 |
| MS.gene21361.t1 | AT5G53870 | 33.333 | 120 | 69 | 3 | 5 | 113 | 4 | 123 | 1.93e-16 | 75.9 |
| MS.gene21361.t1 | AT5G53870 | 33.333 | 120 | 69 | 3 | 5 | 113 | 4 | 123 | 1.95e-16 | 75.9 |
| MS.gene21361.t1 | AT2G44790 | 38.000 | 100 | 56 | 2 | 20 | 117 | 29 | 124 | 1.67e-15 | 71.2 |
| MS.gene21361.t1 | AT2G23990 | 36.029 | 136 | 74 | 5 | 9 | 131 | 13 | 148 | 2.69e-15 | 70.9 |
| MS.gene21361.t1 | AT4G28365 | 28.571 | 154 | 101 | 3 | 5 | 149 | 11 | 164 | 3.60e-15 | 70.5 |
| MS.gene21361.t1 | AT1G45063 | 33.333 | 126 | 76 | 4 | 1 | 120 | 6 | 129 | 3.94e-15 | 71.6 |
| MS.gene21361.t1 | AT1G45063 | 33.333 | 120 | 72 | 5 | 16 | 130 | 142 | 258 | 1.31e-11 | 61.6 |
| MS.gene21361.t1 | AT1G45063 | 33.333 | 126 | 76 | 4 | 1 | 120 | 6 | 129 | 6.06e-15 | 71.6 |
| MS.gene21361.t1 | AT1G45063 | 33.333 | 120 | 72 | 5 | 16 | 130 | 142 | 258 | 1.89e-11 | 61.6 |
| MS.gene21361.t1 | AT1G79800 | 34.454 | 119 | 66 | 4 | 23 | 130 | 34 | 151 | 6.28e-15 | 69.7 |
| MS.gene21361.t1 | AT4G27520 | 35.897 | 117 | 68 | 3 | 4 | 117 | 16 | 128 | 2.20e-14 | 70.1 |
| MS.gene21361.t1 | AT4G12880 | 32.479 | 117 | 75 | 3 | 5 | 118 | 11 | 126 | 2.89e-14 | 66.6 |
| MS.gene21361.t1 | AT1G64640 | 36.364 | 121 | 70 | 3 | 19 | 132 | 29 | 149 | 3.33e-14 | 67.8 |
| MS.gene21361.t1 | AT3G53330 | 33.607 | 122 | 76 | 4 | 23 | 139 | 188 | 309 | 5.76e-14 | 68.6 |
| MS.gene21361.t1 | AT3G18590 | 30.894 | 123 | 77 | 3 | 2 | 117 | 5 | 126 | 2.63e-13 | 65.1 |
| MS.gene21361.t1 | AT4G30590 | 34.188 | 117 | 70 | 4 | 4 | 113 | 8 | 124 | 6.16e-13 | 64.3 |
| MS.gene21361.t1 | AT1G22480 | 32.231 | 121 | 76 | 2 | 1 | 120 | 1 | 116 | 8.92e-13 | 63.5 |
| MS.gene21361.t1 | AT5G57920 | 34.783 | 92 | 53 | 2 | 37 | 127 | 42 | 127 | 1.58e-12 | 63.2 |
| MS.gene21361.t1 | AT4G32490 | 33.058 | 121 | 76 | 3 | 4 | 121 | 14 | 132 | 1.90e-12 | 63.5 |
| MS.gene21361.t1 | AT5G57920 | 34.783 | 92 | 53 | 2 | 37 | 127 | 41 | 126 | 3.24e-12 | 62.0 |
| MS.gene21361.t1 | AT5G57920 | 32.710 | 107 | 61 | 3 | 26 | 127 | 59 | 159 | 3.76e-12 | 62.4 |
| MS.gene21361.t1 | AT3G01070 | 38.938 | 113 | 66 | 2 | 9 | 118 | 13 | 125 | 4.95e-12 | 61.2 |
| MS.gene21361.t1 | AT1G48940 | 31.707 | 123 | 76 | 4 | 2 | 117 | 4 | 125 | 5.85e-11 | 58.5 |
Find 28 sgRNAs with CRISPR-Local
Find 46 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGTGCTCTTCTTTGTTGA+TGG | 0.310086 | 1.4:+71510248 | None:intergenic |
| AATCTGTAGCATCCCATAAA+AGG | 0.320012 | 1.4:+71510169 | None:intergenic |
| TATAGTTTATATTGCTGTTA+TGG | 0.320304 | 1.4:-71510195 | MS.gene21361:CDS |
| TCTGTTCCAGCTACTGCTTT+TGG | 0.352278 | 1.4:+71510284 | None:intergenic |
| ACAAAAGTGTTGGCAAATTA+CGG | 0.407043 | 1.4:-71510446 | MS.gene21361:CDS |
| GTGTTGGCAAATTACGGAAA+TGG | 0.435345 | 1.4:-71510440 | MS.gene21361:CDS |
| CATTGACAAGAGCCGGAGAC+AGG | 0.497365 | 1.4:-71510403 | MS.gene21361:CDS |
| CTGTCTCCGGCTCTTGTCAA+TGG | 0.513474 | 1.4:+71510404 | None:intergenic |
| CTGTTGGAGATAGCTCTGGC+TGG | 0.524284 | 1.4:-71510912 | MS.gene21361:CDS |
| CTAGCACCAAAAGCAGTAGC+TGG | 0.525300 | 1.4:-71510290 | MS.gene21361:CDS |
| TACACTGTTGGAGATAGCTC+TGG | 0.540204 | 1.4:-71510916 | MS.gene21361:CDS |
| AACAAACTGTATTGCCTTGG+TGG | 0.541279 | 1.4:-71510365 | MS.gene21361:CDS |
| ACATACAAAATACCTGTCTC+CGG | 0.555623 | 1.4:+71510391 | None:intergenic |
| ACGGTGCCATTGACAAGAGC+CGG | 0.574751 | 1.4:-71510410 | MS.gene21361:CDS |
| ATGCAACACAACAAAAGTGT+TGG | 0.577530 | 1.4:-71510456 | MS.gene21361:CDS |
| TCAGCAACTACCTACACTGT+TGG | 0.586019 | 1.4:-71510928 | MS.gene21361:CDS |
| TGTTGGAGATAGCTCTGGCT+GGG | 0.608785 | 1.4:-71510911 | MS.gene21361:CDS |
| AGAGCTATCTCCAACAGTGT+AGG | 0.611707 | 1.4:+71510918 | None:intergenic |
| CATGTTCATGTAGAAGATGA+CGG | 0.616290 | 1.4:-71510332 | MS.gene21361:CDS |
| CAGTAGCTGGAACAGATCAA+AGG | 0.619028 | 1.4:-71510277 | MS.gene21361:CDS |
| ATCGACATACAGTGTGGACG+AGG | 0.624451 | 1.4:-71510501 | MS.gene21361:CDS |
| TTAGCTCTAATCTAGAAACA+TGG | 0.627015 | 1.4:-71510885 | MS.gene21361:CDS |
| TAGCTCTAATCTAGAAACAT+GGG | 0.636260 | 1.4:-71510884 | MS.gene21361:CDS |
| GGAAACAAACTGTATTGCCT+TGG | 0.642701 | 1.4:-71510368 | MS.gene21361:CDS |
| ACAAACTGTATTGCCTTGGT+GGG | 0.646382 | 1.4:-71510364 | MS.gene21361:CDS |
| CATGAAGTTTCATCCCACCA+AGG | 0.728162 | 1.4:+71510351 | None:intergenic |
| ATATTCATCGACATACAGTG+TGG | 0.739211 | 1.4:-71510507 | MS.gene21361:CDS |
| TTACGGAAATGGAAACACGA+CGG | 0.772125 | 1.4:-71510429 | MS.gene21361:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATATTTGTATTTTTGA+GGG | - | chr1.4:71510460-71510479 | MS.gene21361:CDS | 10.0% |
| !!! | TATTTATATTTGTATTTTTG+AGG | - | chr1.4:71510459-71510478 | MS.gene21361:CDS | 10.0% |
| !! | AATTATTGAATGAAAGATGA+AGG | + | chr1.4:71510333-71510352 | None:intergenic | 20.0% |
| !! | ATGAATATTGAAAAACTGAA+AGG | + | chr1.4:71510629-71510648 | None:intergenic | 20.0% |
| !!! | AACAGATTTTATGCATTTAT+AGG | - | chr1.4:71510562-71510581 | MS.gene21361:intron | 20.0% |
| !!! | TATAGTTTATATTGCTGTTA+TGG | - | chr1.4:71510953-71510972 | MS.gene21361:CDS | 20.0% |
| !!! | TGTTTTTATTAATCCATAGA+TGG | + | chr1.4:71510430-71510449 | None:intergenic | 20.0% |
| ! | GCTGATAAAAATTTCAAGAT+AGG | - | chr1.4:71510289-71510308 | MS.gene21361:CDS | 25.0% |
| ! | TAACAAAAAAAGTTCCCAAA+TGG | + | chr1.4:71510601-71510620 | None:intergenic | 25.0% |
| GACAACATTTACAACCATTT+GGG | - | chr1.4:71510584-71510603 | MS.gene21361:intron | 30.0% | |
| ! | TCTTTCTCTTCTGTTTTCTT+TGG | - | chr1.4:71510183-71510202 | MS.gene21361:CDS | 30.0% |
| !! | AAGAGCACAGAATTTTCAAA+GGG | - | chr1.4:71510912-71510931 | MS.gene21361:CDS | 30.0% |
| !! | ACAAAAGTGTTGGCAAATTA+CGG | - | chr1.4:71510702-71510721 | MS.gene21361:intron | 30.0% |
| !! | TAGCTCTAATCTAGAAACAT+GGG | - | chr1.4:71510264-71510283 | MS.gene21361:CDS | 30.0% |
| !! | TTAGCTCTAATCTAGAAACA+TGG | - | chr1.4:71510263-71510282 | MS.gene21361:CDS | 30.0% |
| AATCTGTAGCATCCCATAAA+AGG | + | chr1.4:71510982-71511001 | None:intergenic | 35.0% | |
| ACATACAAAATACCTGTCTC+CGG | + | chr1.4:71510760-71510779 | None:intergenic | 35.0% | |
| ATATTCATCGACATACAGTG+TGG | - | chr1.4:71510641-71510660 | MS.gene21361:intron | 35.0% | |
| CATGTTCATGTAGAAGATGA+CGG | - | chr1.4:71510816-71510835 | MS.gene21361:intron | 35.0% | |
| GGACAACATTTACAACCATT+TGG | - | chr1.4:71510583-71510602 | MS.gene21361:intron | 35.0% | |
| ! | ATGCAACACAACAAAAGTGT+TGG | - | chr1.4:71510692-71510711 | MS.gene21361:intron | 35.0% |
| ! | CTGTTATGGTAGCCTTTTAT+GGG | - | chr1.4:71510967-71510986 | MS.gene21361:CDS | 35.0% |
| !! | GAAGAGCACAGAATTTTCAA+AGG | - | chr1.4:71510911-71510930 | MS.gene21361:CDS | 35.0% |
| AACAAACTGTATTGCCTTGG+TGG | - | chr1.4:71510783-71510802 | MS.gene21361:intron | 40.0% | |
| ACAAACTGTATTGCCTTGGT+GGG | - | chr1.4:71510784-71510803 | MS.gene21361:intron | 40.0% | |
| ATTCTCTCTGTGACCATCTA+TGG | - | chr1.4:71510414-71510433 | MS.gene21361:CDS | 40.0% | |
| GGAAACAAACTGTATTGCCT+TGG | - | chr1.4:71510780-71510799 | MS.gene21361:intron | 40.0% | |
| TCTGTGCTCTTCTTTGTTGA+TGG | + | chr1.4:71510903-71510922 | None:intergenic | 40.0% | |
| TTACGGAAATGGAAACACGA+CGG | - | chr1.4:71510719-71510738 | MS.gene21361:intron | 40.0% | |
| ! | GCTGTTATGGTAGCCTTTTA+TGG | - | chr1.4:71510966-71510985 | MS.gene21361:CDS | 40.0% |
| ! | GGAGACAGGTATTTTGTATG+TGG | - | chr1.4:71510759-71510778 | MS.gene21361:intron | 40.0% |
| ! | GTGTTGGCAAATTACGGAAA+TGG | - | chr1.4:71510708-71510727 | MS.gene21361:intron | 40.0% |
| !!! | ACTGCTTTTGGTGCTAGATT+TGG | + | chr1.4:71510855-71510874 | None:intergenic | 40.0% |
| AGAGCTATCTCCAACAGTGT+AGG | + | chr1.4:71510233-71510252 | None:intergenic | 45.0% | |
| CAGTAGCTGGAACAGATCAA+AGG | - | chr1.4:71510871-71510890 | MS.gene21361:CDS | 45.0% | |
| CATGAAGTTTCATCCCACCA+AGG | + | chr1.4:71510800-71510819 | None:intergenic | 45.0% | |
| TACACTGTTGGAGATAGCTC+TGG | - | chr1.4:71510232-71510251 | MS.gene21361:CDS | 45.0% | |
| TCAGCAACTACCTACACTGT+TGG | - | chr1.4:71510220-71510239 | MS.gene21361:CDS | 45.0% | |
| ! | TCTGTTCCAGCTACTGCTTT+TGG | + | chr1.4:71510867-71510886 | None:intergenic | 45.0% |
| ATCGACATACAGTGTGGACG+AGG | - | chr1.4:71510647-71510666 | MS.gene21361:intron | 50.0% | |
| CTAGCACCAAAAGCAGTAGC+TGG | - | chr1.4:71510858-71510877 | MS.gene21361:CDS | 50.0% | |
| !! | TGTTGGAGATAGCTCTGGCT+GGG | - | chr1.4:71510237-71510256 | MS.gene21361:CDS | 50.0% |
| CATTGACAAGAGCCGGAGAC+AGG | - | chr1.4:71510745-71510764 | MS.gene21361:intron | 55.0% | |
| CTGTCTCCGGCTCTTGTCAA+TGG | + | chr1.4:71510747-71510766 | None:intergenic | 55.0% | |
| !! | ACGGTGCCATTGACAAGAGC+CGG | - | chr1.4:71510738-71510757 | MS.gene21361:intron | 55.0% |
| !! | CTGTTGGAGATAGCTCTGGC+TGG | - | chr1.4:71510236-71510255 | MS.gene21361:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 71510166 | 71511004 | 71510166 | ID=MS.gene21361 |
| chr1.4 | mRNA | 71510166 | 71511004 | 71510166 | ID=MS.gene21361.t1;Parent=MS.gene21361 |
| chr1.4 | exon | 71510848 | 71511004 | 71510848 | ID=MS.gene21361.t1.exon1;Parent=MS.gene21361.t1 |
| chr1.4 | CDS | 71510848 | 71511004 | 71510848 | ID=cds.MS.gene21361.t1;Parent=MS.gene21361.t1 |
| chr1.4 | exon | 71510166 | 71510536 | 71510166 | ID=MS.gene21361.t1.exon2;Parent=MS.gene21361.t1 |
| chr1.4 | CDS | 71510166 | 71510536 | 71510166 | ID=cds.MS.gene21361.t1;Parent=MS.gene21361.t1 |
| Gene Sequence |
| Protein sequence |
