Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21537.t1 | XP_003611360.2 | 91 | 388 | 35 | 0 | 1 | 388 | 18 | 405 | 1.50E-197 | 698.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21537.t1 | G7JXG1 | 91.0 | 388 | 35 | 0 | 1 | 388 | 1 | 388 | 1.1e-197 | 698.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050648 | MS.gene21537 | 0.801287 | 9.67E-49 | -1.69E-46 |
| MS.gene051629 | MS.gene21537 | 0.81533 | 9.77E-52 | -1.69E-46 |
| MS.gene059300 | MS.gene21537 | 0.830029 | 3.70E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21537.t1 | MTR_5g013140 | 90.979 | 388 | 35 | 0 | 1 | 388 | 1 | 388 | 0.0 | 723 |
| MS.gene21537.t1 | MTR_5g013080 | 68.027 | 147 | 45 | 1 | 114 | 258 | 1 | 147 | 5.38e-59 | 191 |
| MS.gene21537.t1 | MTR_5g013080 | 92.157 | 51 | 4 | 0 | 338 | 388 | 149 | 199 | 7.75e-25 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21537.t1 | AT4G16807 | 28.125 | 416 | 225 | 12 | 5 | 388 | 65 | 438 | 1.30e-25 | 107 |
Find 70 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGTTCAACACAAACTTTC+GGG | 0.249535 | 5.3:+6165180 | None:intergenic |
| TCGTCGTCATCGTGCCCTTC+TGG | 0.289085 | 5.3:-6166676 | MS.gene21537:intron |
| TATTGCCAGCACTTCCCATT+TGG | 0.366346 | 5.3:-6164732 | MS.gene21537:CDS |
| TCCAATGTCATGGAGATTAC+AGG | 0.369680 | 5.3:-6164230 | MS.gene21537:CDS |
| TTTCAGAGCCTCCTGATGTT+GGG | 0.387418 | 5.3:-6166521 | MS.gene21537:intron |
| AGCCTCCTGATGTTGGGAAT+TGG | 0.387623 | 5.3:-6166515 | MS.gene21537:CDS |
| AGAAGCGCATTTAATGTCAT+TGG | 0.389700 | 5.3:-6164600 | MS.gene21537:CDS |
| TTGTGTTCAACACAAACTTT+CGG | 0.390958 | 5.3:+6165179 | None:intergenic |
| CGCATAATGAGCCGGTGAAC+CGG | 0.395632 | 5.3:-6164649 | MS.gene21537:CDS |
| AGCTCAGGCACACATTTCTC+TGG | 0.405970 | 5.3:-6165528 | MS.gene21537:intron |
| AGGTTAGGGTTCAAGATGAA+TGG | 0.407110 | 5.3:-6166377 | MS.gene21537:CDS |
| AACCAGGAGTTCCATGATTC+CGG | 0.410764 | 5.3:+6164630 | None:intergenic |
| TTCAAAGCAGGCCCACGATC+AGG | 0.440360 | 5.3:+6164179 | None:intergenic |
| AAATTTCACTCTCGAAGAAT+CGG | 0.441523 | 5.3:-6166454 | MS.gene21537:CDS |
| TGAATATCAATCTCCCAATC+TGG | 0.442361 | 5.3:-6166481 | MS.gene21537:CDS |
| GAGAACCAGTTTCTGATATC+CGG | 0.443196 | 5.3:+6165344 | None:intergenic |
| GCTAAACATGTGTTGATGTC+AGG | 0.446908 | 5.3:+6164482 | None:intergenic |
| ATGTTTAGCTAAAAGATTCT+CGG | 0.447592 | 5.3:-6164468 | MS.gene21537:CDS |
| GTGAAATTTGAATCCAGATT+GGG | 0.447623 | 5.3:+6166468 | None:intergenic |
| TCATGGAGATTACAGGGAAA+TGG | 0.453039 | 5.3:-6164223 | MS.gene21537:CDS |
| AATCTGGATTCTTGCAGCTC+AGG | 0.454144 | 5.3:-6165543 | MS.gene21537:CDS |
| GCAGCCATGCATGCAAGATA+AGG | 0.455441 | 5.3:-6164699 | MS.gene21537:CDS |
| AGTGAAATTTGAATCCAGAT+TGG | 0.462440 | 5.3:+6166467 | None:intergenic |
| GACATTGGACTGTTGAAGAT+TGG | 0.464044 | 5.3:+6164244 | None:intergenic |
| TCCATTGTCATGTGAAAAGA+AGG | 0.465069 | 5.3:-6164300 | MS.gene21537:CDS |
| AGCCTCCGGATATCAGAAAC+TGG | 0.465768 | 5.3:-6165349 | MS.gene21537:CDS |
| GAGAACCAATTCCCAACATC+AGG | 0.480177 | 5.3:+6166510 | None:intergenic |
| GGTTAGGGTTCAAGATGAAT+GGG | 0.480528 | 5.3:-6166376 | MS.gene21537:CDS |
| AACCGGAATCATGGAACTCC+TGG | 0.483317 | 5.3:-6164632 | MS.gene21537:CDS |
| TGATTTCGCTTCTTCGGCAG+TGG | 0.483565 | 5.3:+6164529 | None:intergenic |
| GCAACTTAGGCTTGAGCGAT+GGG | 0.488460 | 5.3:-6164156 | MS.gene21537:CDS |
| ATAAGAAATAACGAAAATGA+TGG | 0.492938 | 5.3:-6164428 | MS.gene21537:CDS |
| ATCTCAGCAAGATGAAAAGA+AGG | 0.497254 | 5.3:-6166415 | MS.gene21537:CDS |
| TGACAGGATGATGGTAGTAC+TGG | 0.499078 | 5.3:-6164773 | MS.gene21537:intron |
| GAGCCGGTGAACCGGAATCA+TGG | 0.503728 | 5.3:-6164641 | MS.gene21537:CDS |
| AGTGCCTTATCTTGCATGCA+TGG | 0.506122 | 5.3:+6164695 | None:intergenic |
| AGGCCTCATTGCACTTGTAT+CGG | 0.507145 | 5.3:+6164574 | None:intergenic |
| GTTCCATGATTCCGGTTCAC+CGG | 0.512708 | 5.3:+6164638 | None:intergenic |
| TTGCAGTGTTCAACAAGTAC+AGG | 0.515016 | 5.3:-6164329 | MS.gene21537:CDS |
| AGCAACTTAGGCTTGAGCGA+TGG | 0.515958 | 5.3:-6164157 | MS.gene21537:CDS |
| AGTAATGAAGAAGTTTCTGA+AGG | 0.528030 | 5.3:-6165275 | MS.gene21537:CDS |
| CCCTGTAATCTCCATGACAT+TGG | 0.528548 | 5.3:+6164229 | None:intergenic |
| GGCCTGCTTTGAAGCAACTT+AGG | 0.532572 | 5.3:-6164169 | MS.gene21537:CDS |
| AGCCTAAGTTGCTTCAAAGC+AGG | 0.537361 | 5.3:+6164167 | None:intergenic |
| TTGTTAATAAAGATGAAGTC+AGG | 0.541273 | 5.3:-6165217 | MS.gene21537:CDS |
| TAAAGATGATAATCAGAAAG+AGG | 0.543354 | 5.3:-6166313 | MS.gene21537:CDS |
| GAAGGGTGTTGCAAAGAGAA+AGG | 0.548528 | 5.3:-6164282 | MS.gene21537:CDS |
| ATATTCACCTTGGTCAAACA+TGG | 0.550722 | 5.3:+6166288 | None:intergenic |
| GGAATAAGTGTGAAGAGGAG+AGG | 0.560247 | 5.3:-6165253 | MS.gene21537:CDS |
| CCAATGTCATGGAGATTACA+GGG | 0.563427 | 5.3:-6164229 | MS.gene21537:CDS |
| TGAAGGGAATAAGTGTGAAG+AGG | 0.567436 | 5.3:-6165258 | MS.gene21537:CDS |
| TTCAACCACGCATAATGAGC+CGG | 0.575278 | 5.3:-6164657 | MS.gene21537:CDS |
| TCTTCAACAGTCCAATGTCA+TGG | 0.584453 | 5.3:-6164240 | MS.gene21537:CDS |
| GTAATGAAGAAGTTTCTGAA+GGG | 0.585358 | 5.3:-6165274 | MS.gene21537:CDS |
| GTGTTCAACACAAACTTTCG+GGG | 0.605811 | 5.3:+6165181 | None:intergenic |
| GCTTGAGCGATGGGTTCACA+AGG | 0.606909 | 5.3:-6164147 | None:intergenic |
| AACCAATTCCCAACATCAGG+AGG | 0.613775 | 5.3:+6166513 | None:intergenic |
| ATTGAACAATGACAGGATGA+TGG | 0.629600 | 5.3:-6164782 | MS.gene21537:intron |
| TGCGCTTCTCTATTACAACC+AGG | 0.639097 | 5.3:+6164614 | None:intergenic |
| TATTCACCTTGGTCAAACAT+GGG | 0.643851 | 5.3:+6166289 | None:intergenic |
| GTTCACCGGCTCATTATGCG+TGG | 0.645544 | 5.3:+6164652 | None:intergenic |
| GAGAAGCTAGTGCAATGTGG+TGG | 0.647484 | 5.3:-6166345 | MS.gene21537:CDS |
| AAAGTTTGTGTTGAACACAA+TGG | 0.660009 | 5.3:-6165176 | MS.gene21537:CDS |
| AACCAGTTTCTGATATCCGG+AGG | 0.660103 | 5.3:+6165347 | None:intergenic |
| GATATGGACACATACCAGAA+GGG | 0.661804 | 5.3:+6166662 | None:intergenic |
| AGAGGACCCATGTTTGACCA+AGG | 0.677969 | 5.3:-6166295 | MS.gene21537:intron |
| CCATTGTCATGTGAAAAGAA+GGG | 0.677971 | 5.3:-6164299 | MS.gene21537:CDS |
| TGTTCAACACAAACTTTCGG+GGG | 0.687613 | 5.3:+6165182 | None:intergenic |
| ACACCGATACAAGTGCAATG+AGG | 0.733865 | 5.3:-6164577 | MS.gene21537:CDS |
| AGAGAGAAGCTAGTGCAATG+TGG | 0.775658 | 5.3:-6166348 | MS.gene21537:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTTTGTCATAAGTTATAA+GGG | - | chr5.3:6165063-6165082 | MS.gene21537:intron | 20.0% |
| !! | AATTGAAAATTTCTTCATGT+AGG | - | chr5.3:6164986-6165005 | MS.gene21537:intron | 20.0% |
| !! | AATTGTAAATAATACACCTT+TGG | - | chr5.3:6165744-6165763 | MS.gene21537:intron | 20.0% |
| !! | ATAAGAAATAACGAAAATGA+TGG | - | chr5.3:6166399-6166418 | MS.gene21537:CDS | 20.0% |
| !! | GAGAAAATAAAGAAAAATCT+TGG | - | chr5.3:6166454-6166473 | MS.gene21537:CDS | 20.0% |
| !! | TAAGTTTGTCATAAGTTATA+AGG | - | chr5.3:6165062-6165081 | MS.gene21537:intron | 20.0% |
| !! | TTAACACAAAAACCTAAAAA+AGG | - | chr5.3:6164250-6164269 | MS.gene21537:CDS | 20.0% |
| !!! | TGCTAAAAGTATCTATAATT+TGG | - | chr5.3:6165356-6165375 | MS.gene21537:intron | 20.0% |
| !!! | TTTTCAAGTTATAGTGTTAA+TGG | - | chr5.3:6164860-6164879 | MS.gene21537:intron | 20.0% |
| ! | AAACCATTGGAATTGAAATT+AGG | - | chr5.3:6164199-6164218 | MS.gene21537:CDS | 25.0% |
| ! | AAAGAAGGAAAAAAGAAATC+AGG | - | chr5.3:6165151-6165170 | MS.gene21537:intron | 25.0% |
| ! | AAGAAATTTGAAAAGAAGCA+TGG | + | chr5.3:6165335-6165354 | None:intergenic | 25.0% |
| ! | AATATGCATGATCAGAATTT+AGG | + | chr5.3:6165785-6165804 | None:intergenic | 25.0% |
| ! | AATCACTAACAGAAATCAAA+AGG | + | chr5.3:6164281-6164300 | None:intergenic | 25.0% |
| ! | AATTACAAAAAACACAAGCA+AGG | + | chr5.3:6165455-6165474 | None:intergenic | 25.0% |
| ! | ATGACTCAATAAATGTTCTT+TGG | - | chr5.3:6166021-6166040 | MS.gene21537:intron | 25.0% |
| ! | ATGTTTAGCTAAAAGATTCT+CGG | - | chr5.3:6166359-6166378 | MS.gene21537:CDS | 25.0% |
| ! | ATTCCTAATTTCAATTCCAA+TGG | + | chr5.3:6164205-6164224 | None:intergenic | 25.0% |
| ! | ATTGAGTAAAATATTCACCT+TGG | + | chr5.3:6164552-6164571 | None:intergenic | 25.0% |
| ! | GATCATGCATATTTGTAATA+TGG | - | chr5.3:6165792-6165811 | MS.gene21537:intron | 25.0% |
| ! | TAAAAGCTTGTGTCTTTATA+AGG | + | chr5.3:6164752-6164771 | None:intergenic | 25.0% |
| ! | TAAAGATGATAATCAGAAAG+AGG | - | chr5.3:6164514-6164533 | MS.gene21537:CDS | 25.0% |
| ! | TAACTATCTAATCTACTTCT+AGG | + | chr5.3:6165842-6165861 | None:intergenic | 25.0% |
| ! | TGACTCAATAAATGTTCTTT+GGG | - | chr5.3:6166022-6166041 | MS.gene21537:intron | 25.0% |
| ! | TTGTTAATAAAGATGAAGTC+AGG | - | chr5.3:6165610-6165629 | MS.gene21537:intron | 25.0% |
| ! | TTTACTTTGTGAAAGTTCAT+AGG | - | chr5.3:6165979-6165998 | MS.gene21537:intron | 25.0% |
| !! | AAAGACACAAGCTTTTATAA+GGG | - | chr5.3:6164755-6164774 | MS.gene21537:CDS | 25.0% |
| !! | TAAAGACACAAGCTTTTATA+AGG | - | chr5.3:6164754-6164773 | MS.gene21537:CDS | 25.0% |
| !!! | CAAAAGGAAATTCCTTTTTT+AGG | + | chr5.3:6164265-6164284 | None:intergenic | 25.0% |
| AAAAACTGAAATCAAAGCTG+AGG | - | chr5.3:6166320-6166339 | MS.gene21537:CDS | 30.0% | |
| AAAAGAAATCAGGTTATGGT+TGG | - | chr5.3:6165161-6165180 | MS.gene21537:CDS | 30.0% | |
| AAAGTTTGTGTTGAACACAA+TGG | - | chr5.3:6165651-6165670 | MS.gene21537:intron | 30.0% | |
| AAATTTCACTCTCGAAGAAT+CGG | - | chr5.3:6164373-6164392 | MS.gene21537:CDS | 30.0% | |
| AGTAATGAAGAAGTTTCTGA+AGG | - | chr5.3:6165552-6165571 | MS.gene21537:intron | 30.0% | |
| AGTGAAATTTGAATCCAGAT+TGG | + | chr5.3:6164363-6164382 | None:intergenic | 30.0% | |
| CACAGAAGCAAATCTAAATT+AGG | - | chr5.3:6164815-6164834 | MS.gene21537:intron | 30.0% | |
| GGAAAAAAGAAATCAGGTTA+TGG | - | chr5.3:6165157-6165176 | MS.gene21537:CDS | 30.0% | |
| GGGTTAATATTCCATTTGAT+TGG | - | chr5.3:6164915-6164934 | MS.gene21537:intron | 30.0% | |
| GTAATGAAGAAGTTTCTGAA+GGG | - | chr5.3:6165553-6165572 | MS.gene21537:intron | 30.0% | |
| GTGAAATTTGAATCCAGATT+GGG | + | chr5.3:6164362-6164381 | None:intergenic | 30.0% | |
| TAACTGAATGATCTACTTCT+AGG | + | chr5.3:6165933-6165952 | None:intergenic | 30.0% | |
| TATAGAAGCTAATCTACACT+AGG | - | chr5.3:6165122-6165141 | MS.gene21537:intron | 30.0% | |
| TCCTTATAGAACAAAACCAT+TGG | - | chr5.3:6164186-6164205 | MS.gene21537:CDS | 30.0% | |
| TTGTGTTCAACACAAACTTT+CGG | + | chr5.3:6165651-6165670 | None:intergenic | 30.0% | |
| TTTATTTGTCTTGCAGAATC+TGG | - | chr5.3:6165268-6165287 | MS.gene21537:CDS | 30.0% | |
| ! | AATGGATCATAGTTACTTTC+AGG | - | chr5.3:6164878-6164897 | MS.gene21537:intron | 30.0% |
| ! | AGATTTGCTTCTGTGATTTA+TGG | + | chr5.3:6164810-6164829 | None:intergenic | 30.0% |
| ! | ATGGATCATAGTTACTTTCA+GGG | - | chr5.3:6164879-6164898 | MS.gene21537:intron | 30.0% |
| ! | CTCTTTTGATAAAAACATGG+AGG | - | chr5.3:6165674-6165693 | MS.gene21537:intron | 30.0% |
| ! | CTGCAAAATCTTTTCCAAAT+GGG | + | chr5.3:6166112-6166131 | None:intergenic | 30.0% |
| ! | TGGCTCTTTTGATAAAAACA+TGG | - | chr5.3:6165671-6165690 | MS.gene21537:intron | 30.0% |
| !! | AAGCAGATTTTGATAAGGTT+AGG | - | chr5.3:6164435-6164454 | MS.gene21537:CDS | 30.0% |
| !! | AGCAGATTTTGATAAGGTTA+GGG | - | chr5.3:6164436-6164455 | MS.gene21537:CDS | 30.0% |
| !! | TAGTTAGTTGATGATCTGAT+AGG | - | chr5.3:6165856-6165875 | MS.gene21537:intron | 30.0% |
| !! | TTAGTTGATGATGACATGAA+TGG | - | chr5.3:6165950-6165969 | MS.gene21537:intron | 30.0% |
| !!! | AGTTTTTGATTTCGCTTCTT+CGG | + | chr5.3:6166307-6166326 | None:intergenic | 30.0% |
| !!! | GGTTTTGTTCTATAAGGATA+TGG | + | chr5.3:6164184-6164203 | None:intergenic | 30.0% |
| !!! | TCCAATGGTTTTGTTCTATA+AGG | + | chr5.3:6164190-6164209 | None:intergenic | 30.0% |
| AAAAACGTAAACCTGATCGT+GGG | - | chr5.3:6166637-6166656 | MS.gene21537:intron | 35.0% | |
| AAATGTTTACCTTTGAGCCT+TGG | + | chr5.3:6165897-6165916 | None:intergenic | 35.0% | |
| ATATTCACCTTGGTCAAACA+TGG | + | chr5.3:6164542-6164561 | None:intergenic | 35.0% | |
| ATCTAGACAGTCCAATCAAA+TGG | + | chr5.3:6164929-6164948 | None:intergenic | 35.0% | |
| ATCTCAGCAAGATGAAAAGA+AGG | - | chr5.3:6164412-6164431 | MS.gene21537:CDS | 35.0% | |
| ATTGAACAATGACAGGATGA+TGG | - | chr5.3:6166045-6166064 | MS.gene21537:intron | 35.0% | |
| CACCTTTGGTTAATGATCAA+TGG | - | chr5.3:6165758-6165777 | MS.gene21537:intron | 35.0% | |
| CCATTGTCATGTGAAAAGAA+GGG | - | chr5.3:6166528-6166547 | MS.gene21537:intron | 35.0% | |
| GACCATTGATCATTAACCAA+AGG | + | chr5.3:6165763-6165782 | None:intergenic | 35.0% | |
| GCAAATCTAAATTAGGCTGA+AGG | - | chr5.3:6164822-6164841 | MS.gene21537:intron | 35.0% | |
| GGATATTGTTTACTTTGCCA+AGG | - | chr5.3:6165877-6165896 | MS.gene21537:intron | 35.0% | |
| TACACTAGGCTAAAGAAAGA+AGG | - | chr5.3:6165136-6165155 | MS.gene21537:intron | 35.0% | |
| TATTCACCTTGGTCAAACAT+GGG | + | chr5.3:6164541-6164560 | None:intergenic | 35.0% | |
| TCCATTGTCATGTGAAAAGA+AGG | - | chr5.3:6166527-6166546 | MS.gene21537:intron | 35.0% | |
| TGAATATCAATCTCCCAATC+TGG | - | chr5.3:6164346-6164365 | MS.gene21537:CDS | 35.0% | |
| TGTGTTCAACACAAACTTTC+GGG | + | chr5.3:6165650-6165669 | None:intergenic | 35.0% | |
| TTCAGGGTCATCAAATTTCA+GGG | - | chr5.3:6164895-6164914 | MS.gene21537:intron | 35.0% | |
| TTTCAGGGTCATCAAATTTC+AGG | - | chr5.3:6164894-6164913 | MS.gene21537:intron | 35.0% | |
| ! | AGAAGCGCATTTAATGTCAT+TGG | - | chr5.3:6166227-6166246 | MS.gene21537:intron | 35.0% |
| ! | CACTGCAATAATGTCTTTTC+TGG | + | chr5.3:6166486-6166505 | None:intergenic | 35.0% |
| ! | CCATCAAAGTTTTGCTGATA+GGG | - | chr5.3:6165201-6165220 | MS.gene21537:CDS | 35.0% |
| ! | GATCAGGTTTACGTTTTTGT+GGG | + | chr5.3:6166635-6166654 | None:intergenic | 35.0% |
| ! | GCTGCAAAATCTTTTCCAAA+TGG | + | chr5.3:6166113-6166132 | None:intergenic | 35.0% |
| ! | TTTTTGTAATTCAGAGCCTC+CGG | - | chr5.3:6165464-6165483 | MS.gene21537:intron | 35.0% |
| !! | GAAGGAAGCAGATTTTGATA+AGG | - | chr5.3:6164430-6164449 | MS.gene21537:CDS | 35.0% |
| !!! | ATGATGGTTTTGTTACAACG+AGG | - | chr5.3:6166415-6166434 | MS.gene21537:CDS | 35.0% |
| AGGTTAGGGTTCAAGATGAA+TGG | - | chr5.3:6164450-6164469 | MS.gene21537:CDS | 40.0% | |
| CAAAAACGTAAACCTGATCG+TGG | - | chr5.3:6166636-6166655 | MS.gene21537:intron | 40.0% | |
| CCAATGTCATGGAGATTACA+GGG | - | chr5.3:6166598-6166617 | MS.gene21537:intron | 40.0% | |
| CCCTATCAGCAAAACTTTGA+TGG | + | chr5.3:6165204-6165223 | None:intergenic | 40.0% | |
| GACATTGGACTGTTGAAGAT+TGG | + | chr5.3:6166586-6166605 | None:intergenic | 40.0% | |
| GAGAACCAGTTTCTGATATC+CGG | + | chr5.3:6165486-6165505 | None:intergenic | 40.0% | |
| GATATGGACACATACCAGAA+GGG | + | chr5.3:6164168-6164187 | None:intergenic | 40.0% | |
| GGTTAGGGTTCAAGATGAAT+GGG | - | chr5.3:6164451-6164470 | MS.gene21537:CDS | 40.0% | |
| GTGTTCAACACAAACTTTCG+GGG | + | chr5.3:6165649-6165668 | None:intergenic | 40.0% | |
| TCATGGAGATTACAGGGAAA+TGG | - | chr5.3:6166604-6166623 | MS.gene21537:intron | 40.0% | |
| TCCAATGTCATGGAGATTAC+AGG | - | chr5.3:6166597-6166616 | MS.gene21537:intron | 40.0% | |
| TCTTCAACAGTCCAATGTCA+TGG | - | chr5.3:6166587-6166606 | MS.gene21537:intron | 40.0% | |
| TGAAGGGAATAAGTGTGAAG+AGG | - | chr5.3:6165569-6165588 | MS.gene21537:intron | 40.0% | |
| TGTTCAACACAAACTTTCGG+GGG | + | chr5.3:6165648-6165667 | None:intergenic | 40.0% | |
| TTGCAGTGTTCAACAAGTAC+AGG | - | chr5.3:6166498-6166517 | MS.gene21537:CDS | 40.0% | |
| TTTACTTTGCCAAGGCTCAA+AGG | - | chr5.3:6165885-6165904 | MS.gene21537:intron | 40.0% | |
| ! | CCCTTCTTTTCACATGACAA+TGG | + | chr5.3:6166531-6166550 | None:intergenic | 40.0% |
| ! | CGATCAGGTTTACGTTTTTG+TGG | + | chr5.3:6166636-6166655 | None:intergenic | 40.0% |
| ! | GCCATCAAAGTTTTGCTGAT+AGG | - | chr5.3:6165200-6165219 | MS.gene21537:CDS | 40.0% |
| ! | GCTAAACATGTGTTGATGTC+AGG | + | chr5.3:6166348-6166367 | None:intergenic | 40.0% |
| !! | CTTTGGGATTGAACAATGAC+AGG | - | chr5.3:6166038-6166057 | MS.gene21537:intron | 40.0% |
| !! | GCATGCTTTTGTACTAGCTT+TGG | + | chr5.3:6166279-6166298 | None:intergenic | 40.0% |
| !!! | TGCTTTTGTACTAGCTTTGG+AGG | + | chr5.3:6166276-6166295 | None:intergenic | 40.0% |
| AACCAATTCCCAACATCAGG+AGG | + | chr5.3:6164317-6164336 | None:intergenic | 45.0% | |
| AACCAGGAGTTCCATGATTC+CGG | + | chr5.3:6166200-6166219 | None:intergenic | 45.0% | |
| AACCAGTTTCTGATATCCGG+AGG | + | chr5.3:6165483-6165502 | None:intergenic | 45.0% | |
| AATCTGGATTCTTGCAGCTC+AGG | - | chr5.3:6165284-6165303 | MS.gene21537:CDS | 45.0% | |
| ACACCGATACAAGTGCAATG+AGG | - | chr5.3:6166250-6166269 | MS.gene21537:intron | 45.0% | |
| AGAGAGAAGCTAGTGCAATG+TGG | - | chr5.3:6164479-6164498 | MS.gene21537:CDS | 45.0% | |
| AGCCTAAGTTGCTTCAAAGC+AGG | + | chr5.3:6166663-6166682 | None:intergenic | 45.0% | |
| AGGCCTCATTGCACTTGTAT+CGG | + | chr5.3:6166256-6166275 | None:intergenic | 45.0% | |
| AGTGCCTTATCTTGCATGCA+TGG | + | chr5.3:6166135-6166154 | None:intergenic | 45.0% | |
| CCCTGTAATCTCCATGACAT+TGG | + | chr5.3:6166601-6166620 | None:intergenic | 45.0% | |
| GAGAACCAATTCCCAACATC+AGG | + | chr5.3:6164320-6164339 | None:intergenic | 45.0% | |
| GGAATAAGTGTGAAGAGGAG+AGG | - | chr5.3:6165574-6165593 | MS.gene21537:intron | 45.0% | |
| GGATATGGACACATACCAGA+AGG | + | chr5.3:6164169-6164188 | None:intergenic | 45.0% | |
| TATTGCCAGCACTTCCCATT+TGG | - | chr5.3:6166095-6166114 | MS.gene21537:intron | 45.0% | |
| TGCGCTTCTCTATTACAACC+AGG | + | chr5.3:6166216-6166235 | None:intergenic | 45.0% | |
| TTCAACCACGCATAATGAGC+CGG | - | chr5.3:6166170-6166189 | MS.gene21537:intron | 45.0% | |
| TTTCAGAGCCTCCTGATGTT+GGG | - | chr5.3:6164306-6164325 | MS.gene21537:CDS | 45.0% | |
| ! | TGACAGGATGATGGTAGTAC+TGG | - | chr5.3:6166054-6166073 | MS.gene21537:intron | 45.0% |
| ! | TTTTCAGAGCCTCCTGATGT+TGG | - | chr5.3:6164305-6164324 | MS.gene21537:CDS | 45.0% |
| !! | CTTTTCCAAATGGGAAGTGC+TGG | + | chr5.3:6166103-6166122 | None:intergenic | 45.0% |
| !! | GAAGGGTGTTGCAAAGAGAA+AGG | - | chr5.3:6166545-6166564 | MS.gene21537:intron | 45.0% |
| AACCGGAATCATGGAACTCC+TGG | - | chr5.3:6166195-6166214 | MS.gene21537:intron | 50.0% | |
| AGAGGACCCATGTTTGACCA+AGG | - | chr5.3:6164532-6164551 | MS.gene21537:CDS | 50.0% | |
| AGCAACTTAGGCTTGAGCGA+TGG | - | chr5.3:6166670-6166689 | MS.gene21537:intron | 50.0% | |
| AGCCTCCGGATATCAGAAAC+TGG | - | chr5.3:6165478-6165497 | MS.gene21537:intron | 50.0% | |
| AGCCTCCTGATGTTGGGAAT+TGG | - | chr5.3:6164312-6164331 | MS.gene21537:CDS | 50.0% | |
| AGCTCAGGCACACATTTCTC+TGG | - | chr5.3:6165299-6165318 | MS.gene21537:CDS | 50.0% | |
| GAGAAGCTAGTGCAATGTGG+TGG | - | chr5.3:6164482-6164501 | MS.gene21537:CDS | 50.0% | |
| GCAACTTAGGCTTGAGCGAT+GGG | - | chr5.3:6166671-6166690 | MS.gene21537:intron | 50.0% | |
| GCAGCCATGCATGCAAGATA+AGG | - | chr5.3:6166128-6166147 | MS.gene21537:intron | 50.0% | |
| GTTCCATGATTCCGGTTCAC+CGG | + | chr5.3:6166192-6166211 | None:intergenic | 50.0% | |
| TGATTTCGCTTCTTCGGCAG+TGG | + | chr5.3:6166301-6166320 | None:intergenic | 50.0% | |
| !! | GGCCTGCTTTGAAGCAACTT+AGG | - | chr5.3:6166658-6166677 | MS.gene21537:intron | 50.0% |
| CGCATAATGAGCCGGTGAAC+CGG | - | chr5.3:6166178-6166197 | MS.gene21537:intron | 55.0% | |
| TTCAAAGCAGGCCCACGATC+AGG | + | chr5.3:6166651-6166670 | None:intergenic | 55.0% | |
| !! | GTTCACCGGCTCATTATGCG+TGG | + | chr5.3:6166178-6166197 | None:intergenic | 55.0% |
| GAGCCGGTGAACCGGAATCA+TGG | - | chr5.3:6166186-6166205 | MS.gene21537:intron | 60.0% | |
| TCGTCGTCATCGTGCCCTTC+TGG | - | chr5.3:6164151-6164170 | MS.gene21537:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 6164148 | 6166701 | 6164148 | ID=MS.gene21537 |
| chr5.3 | mRNA | 6164148 | 6166701 | 6164148 | ID=MS.gene21537.t1;Parent=MS.gene21537 |
| chr5.3 | exon | 6166677 | 6166701 | 6166677 | ID=MS.gene21537.t1.exon1;Parent=MS.gene21537.t1 |
| chr5.3 | CDS | 6166677 | 6166701 | 6166677 | ID=cds.MS.gene21537.t1;Parent=MS.gene21537.t1 |
| chr5.3 | exon | 6166296 | 6166537 | 6166296 | ID=MS.gene21537.t1.exon2;Parent=MS.gene21537.t1 |
| chr5.3 | CDS | 6166296 | 6166537 | 6166296 | ID=cds.MS.gene21537.t1;Parent=MS.gene21537.t1 |
| chr5.3 | exon | 6165529 | 6165565 | 6165529 | ID=MS.gene21537.t1.exon3;Parent=MS.gene21537.t1 |
| chr5.3 | CDS | 6165529 | 6165565 | 6165529 | ID=cds.MS.gene21537.t1;Parent=MS.gene21537.t1 |
| chr5.3 | exon | 6165154 | 6165371 | 6165154 | ID=MS.gene21537.t1.exon4;Parent=MS.gene21537.t1 |
| chr5.3 | CDS | 6165154 | 6165371 | 6165154 | ID=cds.MS.gene21537.t1;Parent=MS.gene21537.t1 |
| chr5.3 | exon | 6164148 | 6164789 | 6164148 | ID=MS.gene21537.t1.exon5;Parent=MS.gene21537.t1 |
| chr5.3 | CDS | 6164148 | 6164789 | 6164148 | ID=cds.MS.gene21537.t1;Parent=MS.gene21537.t1 |
| Gene Sequence |
| Protein sequence |
