Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21539.t1 | XP_003611360.2 | 91.1 | 395 | 35 | 0 | 1 | 395 | 18 | 412 | 2.00E-202 | 714.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21539.t1 | G7JXG1 | 91.1 | 395 | 35 | 0 | 1 | 395 | 1 | 395 | 1.5e-202 | 714.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051629 | MS.gene21539 | 0.807625 | 4.61E-50 | -1.69E-46 |
| MS.gene059300 | MS.gene21539 | 0.826189 | 3.11E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21539.t1 | MTR_5g013140 | 91.139 | 395 | 35 | 0 | 1 | 395 | 1 | 395 | 0.0 | 739 |
| MS.gene21539.t1 | MTR_5g013080 | 68.027 | 147 | 45 | 1 | 114 | 258 | 1 | 147 | 7.82e-59 | 190 |
| MS.gene21539.t1 | MTR_5g013080 | 91.228 | 57 | 5 | 0 | 338 | 394 | 149 | 205 | 1.35e-28 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21539.t1 | AT4G16807 | 28.297 | 417 | 225 | 12 | 5 | 389 | 65 | 439 | 2.09e-26 | 110 |
Find 72 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGTTCAACACAAACTTTC+GGG | 0.249535 | 5.3:+6411139 | None:intergenic |
| TCGTCGTCATCGTGCCCTTC+TGG | 0.289085 | 5.3:-6412631 | MS.gene21539:intron |
| TATTGCCAGCACTTCCCATT+TGG | 0.366346 | 5.3:-6410691 | MS.gene21539:CDS |
| TCCAATGTCATGGAGATTAC+AGG | 0.369680 | 5.3:-6410189 | MS.gene21539:CDS |
| TTTCAGAGCCTCCTGATGTT+GGG | 0.387418 | 5.3:-6412477 | MS.gene21539:intron |
| AGCCTCCTGATGTTGGGAAT+TGG | 0.387623 | 5.3:-6412471 | MS.gene21539:CDS |
| AGAAGCGCATTTAATGTCAT+TGG | 0.389700 | 5.3:-6410559 | MS.gene21539:CDS |
| TTGTGTTCAACACAAACTTT+CGG | 0.390958 | 5.3:+6411138 | None:intergenic |
| CGCATAATGAGCCGGTGAAC+CGG | 0.395632 | 5.3:-6410608 | MS.gene21539:CDS |
| AGCTCAGGCACACATTTCTC+TGG | 0.405970 | 5.3:-6411488 | MS.gene21539:intron |
| AGGTTAGGGTTCAAGATGAA+TGG | 0.407110 | 5.3:-6412333 | MS.gene21539:CDS |
| AACCAGGAGTTCCATGATTC+CGG | 0.410764 | 5.3:+6410589 | None:intergenic |
| TTCAAAGCAGGCCCACGATC+AGG | 0.440360 | 5.3:+6410138 | None:intergenic |
| AAATTTCACTCTCGAAGAAT+CGG | 0.441523 | 5.3:-6412410 | MS.gene21539:CDS |
| TGAATATCAATCTCCCAATC+TGG | 0.442361 | 5.3:-6412437 | MS.gene21539:CDS |
| GAGAACCAGTTTCTGATATC+CGG | 0.443196 | 5.3:+6411303 | None:intergenic |
| GCTAAACATGTGTTGATGTC+AGG | 0.446908 | 5.3:+6410441 | None:intergenic |
| ATGTTTAGCTAAAAGATTCT+CGG | 0.447592 | 5.3:-6410427 | MS.gene21539:CDS |
| GTGAAATTTGAATCCAGATT+GGG | 0.447623 | 5.3:+6412424 | None:intergenic |
| TCATGGAGATTACAGGGAAA+TGG | 0.453039 | 5.3:-6410182 | MS.gene21539:CDS |
| AATCTGGATTCTTGCAGCTC+AGG | 0.454144 | 5.3:-6411503 | MS.gene21539:CDS |
| GCAGCCATGCATGCAAGATA+AGG | 0.455441 | 5.3:-6410658 | MS.gene21539:CDS |
| AGTGAAATTTGAATCCAGAT+TGG | 0.462440 | 5.3:+6412423 | None:intergenic |
| GACATTGGACTGTTGAAGAT+TGG | 0.464044 | 5.3:+6410203 | None:intergenic |
| TCCATTGTCATGTGAAAAGA+AGG | 0.465069 | 5.3:-6410259 | MS.gene21539:CDS |
| AGCCTCCGGATATCAGAAAC+TGG | 0.465768 | 5.3:-6411308 | MS.gene21539:CDS |
| GAGAACCAATTCCCAACATC+AGG | 0.480177 | 5.3:+6412466 | None:intergenic |
| GGTTAGGGTTCAAGATGAAT+GGG | 0.480528 | 5.3:-6412332 | MS.gene21539:CDS |
| AACCGGAATCATGGAACTCC+TGG | 0.483317 | 5.3:-6410591 | MS.gene21539:CDS |
| TGATTTCGCTTCTTCGGCAG+TGG | 0.483565 | 5.3:+6410488 | None:intergenic |
| GCAACTTAGGCTTGAGCGAT+GGG | 0.488460 | 5.3:-6410115 | MS.gene21539:CDS |
| ATAAGAAATAACGAAAATGA+TGG | 0.492938 | 5.3:-6410387 | MS.gene21539:CDS |
| ATCTCAGCAAGATGAAAAGA+AGG | 0.497254 | 5.3:-6412371 | MS.gene21539:CDS |
| TGACAGGATGATGGTAGTAC+TGG | 0.499078 | 5.3:-6410732 | MS.gene21539:intron |
| GAGCCGGTGAACCGGAATCA+TGG | 0.503728 | 5.3:-6410600 | MS.gene21539:CDS |
| AGTGCCTTATCTTGCATGCA+TGG | 0.506122 | 5.3:+6410654 | None:intergenic |
| AGGCCTCATTGCACTTGTAT+CGG | 0.507145 | 5.3:+6410533 | None:intergenic |
| GAGCGATGGGTTCACAAGGT+TGG | 0.511141 | 5.3:-6410102 | MS.gene21539:CDS |
| GTTCCATGATTCCGGTTCAC+CGG | 0.512708 | 5.3:+6410597 | None:intergenic |
| TTGCAGTGTTCAACAAGTAC+AGG | 0.515016 | 5.3:-6410288 | MS.gene21539:CDS |
| AGCAACTTAGGCTTGAGCGA+TGG | 0.515958 | 5.3:-6410116 | MS.gene21539:CDS |
| AGTAATGAAGAAGTTTCTGA+AGG | 0.528030 | 5.3:-6411234 | MS.gene21539:CDS |
| CCCTGTAATCTCCATGACAT+TGG | 0.528548 | 5.3:+6410188 | None:intergenic |
| GGCCTGCTTTGAAGCAACTT+AGG | 0.532572 | 5.3:-6410128 | MS.gene21539:CDS |
| AGCCTAAGTTGCTTCAAAGC+AGG | 0.537361 | 5.3:+6410126 | None:intergenic |
| TTGTTAATAAAGATGAAGTC+AGG | 0.541273 | 5.3:-6411176 | MS.gene21539:CDS |
| TAAAGATGATAATCAGAAAG+AGG | 0.543354 | 5.3:-6412269 | MS.gene21539:CDS |
| GAAGGGTGTTGCAAAGAGAA+AGG | 0.548528 | 5.3:-6410241 | MS.gene21539:CDS |
| ATATTCACCTTGGTCAAACA+TGG | 0.550722 | 5.3:+6412244 | None:intergenic |
| GGAATAAGTGTGAAGAGGAG+AGG | 0.560247 | 5.3:-6411212 | MS.gene21539:CDS |
| CCAATGTCATGGAGATTACA+GGG | 0.563427 | 5.3:-6410188 | MS.gene21539:CDS |
| TGAAGGGAATAAGTGTGAAG+AGG | 0.567436 | 5.3:-6411217 | MS.gene21539:CDS |
| TTCAACCACGCATAATGAGC+CGG | 0.575278 | 5.3:-6410616 | MS.gene21539:CDS |
| TCTTCAACAGTCCAATGTCA+TGG | 0.584453 | 5.3:-6410199 | MS.gene21539:CDS |
| GTAATGAAGAAGTTTCTGAA+GGG | 0.585358 | 5.3:-6411233 | MS.gene21539:CDS |
| GTGTTCAACACAAACTTTCG+GGG | 0.605811 | 5.3:+6411140 | None:intergenic |
| GCTTGAGCGATGGGTTCACA+AGG | 0.606909 | 5.3:-6410106 | MS.gene21539:CDS |
| AACCAATTCCCAACATCAGG+AGG | 0.613775 | 5.3:+6412469 | None:intergenic |
| ATTGAACAATGACAGGATGA+TGG | 0.629600 | 5.3:-6410741 | MS.gene21539:intron |
| TGCGCTTCTCTATTACAACC+AGG | 0.639097 | 5.3:+6410573 | None:intergenic |
| TATTCACCTTGGTCAAACAT+GGG | 0.643851 | 5.3:+6412245 | None:intergenic |
| GTTCACCGGCTCATTATGCG+TGG | 0.645544 | 5.3:+6410611 | None:intergenic |
| GAGAAGCTAGTGCAATGTGG+TGG | 0.647484 | 5.3:-6412301 | MS.gene21539:CDS |
| AAAGTTTGTGTTGAACACAA+TGG | 0.660009 | 5.3:-6411135 | MS.gene21539:CDS |
| AACCAGTTTCTGATATCCGG+AGG | 0.660103 | 5.3:+6411306 | None:intergenic |
| GATATGGACACATACCAGAA+GGG | 0.661804 | 5.3:+6412617 | None:intergenic |
| ATGAGCCAACTATGTCAATG+AGG | 0.668959 | 5.3:+6410069 | None:intergenic |
| AGAGGACCCATGTTTGACCA+AGG | 0.677969 | 5.3:-6412251 | MS.gene21539:intron |
| CCATTGTCATGTGAAAAGAA+GGG | 0.677971 | 5.3:-6410258 | MS.gene21539:CDS |
| TGTTCAACACAAACTTTCGG+GGG | 0.687613 | 5.3:+6411141 | None:intergenic |
| ACACCGATACAAGTGCAATG+AGG | 0.733865 | 5.3:-6410536 | MS.gene21539:CDS |
| AGAGAGAAGCTAGTGCAATG+TGG | 0.775658 | 5.3:-6412304 | MS.gene21539:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTTTGTCATAAGTTATAA+GGG | - | chr5.3:6410994-6411013 | MS.gene21539:intron | 20.0% |
| !! | AATTGAAAATTTCTTCATGT+AGG | - | chr5.3:6410917-6410936 | MS.gene21539:intron | 20.0% |
| !! | AATTGTAAATAATACACCTT+TGG | - | chr5.3:6411675-6411694 | MS.gene21539:intron | 20.0% |
| !! | ATAAGAAATAACGAAAATGA+TGG | - | chr5.3:6412330-6412349 | MS.gene21539:CDS | 20.0% |
| !! | GAGAAAATAAAGAAAAATCT+TGG | - | chr5.3:6412385-6412404 | MS.gene21539:CDS | 20.0% |
| !! | TAAGTTTGTCATAAGTTATA+AGG | - | chr5.3:6410993-6411012 | MS.gene21539:intron | 20.0% |
| !! | TTAACACAAAAACCTAAAAA+AGG | - | chr5.3:6410184-6410203 | MS.gene21539:CDS | 20.0% |
| !!! | TGCTAAAAGTATCTATAATT+TGG | - | chr5.3:6411286-6411305 | MS.gene21539:CDS | 20.0% |
| !!! | TTTTCAAGTTATAGTGTTAA+TGG | - | chr5.3:6410791-6410810 | MS.gene21539:intron | 20.0% |
| ! | AAACCATTGGAATTGAAATT+AGG | - | chr5.3:6410134-6410153 | MS.gene21539:CDS | 25.0% |
| ! | AAAGAAGGAAAAAAGAAATC+AGG | - | chr5.3:6411082-6411101 | MS.gene21539:intron | 25.0% |
| ! | AAGAAATTTGAAAAGAAGCA+TGG | + | chr5.3:6411265-6411284 | None:intergenic | 25.0% |
| ! | AATATGCATGATCAGAATTT+AGG | + | chr5.3:6411716-6411735 | None:intergenic | 25.0% |
| ! | AATCACTAACAGAAATCAAA+AGG | + | chr5.3:6410215-6410234 | None:intergenic | 25.0% |
| ! | ATGACTCAATAAATGTTCTT+TGG | - | chr5.3:6411952-6411971 | MS.gene21539:intron | 25.0% |
| ! | ATGTTTAGCTAAAAGATTCT+CGG | - | chr5.3:6412290-6412309 | MS.gene21539:CDS | 25.0% |
| ! | ATTACAAAAAAACACAAGCA+AGG | + | chr5.3:6411385-6411404 | None:intergenic | 25.0% |
| ! | ATTCCTAATTTCAATTCCAA+TGG | + | chr5.3:6410140-6410159 | None:intergenic | 25.0% |
| ! | ATTGAGTAAAATATTCACCT+TGG | + | chr5.3:6410486-6410505 | None:intergenic | 25.0% |
| ! | GATCATGCATATTTGTAATA+TGG | - | chr5.3:6411723-6411742 | MS.gene21539:intron | 25.0% |
| ! | TAAAAGCTTGTGTCTTTATA+AGG | + | chr5.3:6410682-6410701 | None:intergenic | 25.0% |
| ! | TAAAGATGATAATCAGAAAG+AGG | - | chr5.3:6410448-6410467 | MS.gene21539:CDS | 25.0% |
| ! | TAACTATCTAATCTACTTCT+AGG | + | chr5.3:6411773-6411792 | None:intergenic | 25.0% |
| ! | TGACTCAATAAATGTTCTTT+GGG | - | chr5.3:6411953-6411972 | MS.gene21539:intron | 25.0% |
| ! | TTGTTAATAAAGATGAAGTC+AGG | - | chr5.3:6411541-6411560 | MS.gene21539:intron | 25.0% |
| ! | TTTACTTTGTGAAAGTTCAT+AGG | - | chr5.3:6411910-6411929 | MS.gene21539:intron | 25.0% |
| !! | AAAGACACAAGCTTTTATAA+GGG | - | chr5.3:6410685-6410704 | MS.gene21539:CDS | 25.0% |
| !! | TAAAGACACAAGCTTTTATA+AGG | - | chr5.3:6410684-6410703 | MS.gene21539:CDS | 25.0% |
| !!! | CAAAAGGAAATTCCTTTTTT+AGG | + | chr5.3:6410199-6410218 | None:intergenic | 25.0% |
| AAAAACTGAAATCAAAGCTG+AGG | - | chr5.3:6412251-6412270 | MS.gene21539:intron | 30.0% | |
| AAAAGAAATCAGGTTATGGT+TGG | - | chr5.3:6411092-6411111 | MS.gene21539:intron | 30.0% | |
| AAAGTTTGTGTTGAACACAA+TGG | - | chr5.3:6411582-6411601 | MS.gene21539:intron | 30.0% | |
| AAATTTCACTCTCGAAGAAT+CGG | - | chr5.3:6410307-6410326 | MS.gene21539:CDS | 30.0% | |
| AGTAATGAAGAAGTTTCTGA+AGG | - | chr5.3:6411483-6411502 | MS.gene21539:intron | 30.0% | |
| AGTGAAATTTGAATCCAGAT+TGG | + | chr5.3:6410297-6410316 | None:intergenic | 30.0% | |
| CAAATCTAAATTAGGCTGAA+TGG | - | chr5.3:6410753-6410772 | MS.gene21539:intron | 30.0% | |
| CACAGAAGCAAATCTAAATT+AGG | - | chr5.3:6410745-6410764 | MS.gene21539:intron | 30.0% | |
| GGAAAAAAGAAATCAGGTTA+TGG | - | chr5.3:6411088-6411107 | MS.gene21539:intron | 30.0% | |
| GGGTTAATATTCCATTTGAT+TGG | - | chr5.3:6410846-6410865 | MS.gene21539:intron | 30.0% | |
| GTAATGAAGAAGTTTCTGAA+GGG | - | chr5.3:6411484-6411503 | MS.gene21539:intron | 30.0% | |
| GTGAAATTTGAATCCAGATT+GGG | + | chr5.3:6410296-6410315 | None:intergenic | 30.0% | |
| TAACTGAATGATCTACTTCT+AGG | + | chr5.3:6411864-6411883 | None:intergenic | 30.0% | |
| TATAGAAGCTAATCTACACT+AGG | - | chr5.3:6411053-6411072 | MS.gene21539:intron | 30.0% | |
| TCCTTATAGAACAAAACCAT+TGG | - | chr5.3:6410121-6410140 | MS.gene21539:CDS | 30.0% | |
| TTGTGTTCAACACAAACTTT+CGG | + | chr5.3:6411582-6411601 | None:intergenic | 30.0% | |
| TTTATTTGTCTTGCAGAATC+TGG | - | chr5.3:6411198-6411217 | MS.gene21539:CDS | 30.0% | |
| ! | AATGGATCATAGTTACTTTC+AGG | - | chr5.3:6410809-6410828 | MS.gene21539:intron | 30.0% |
| ! | AGATTTGCTTCTGTGATTTA+TGG | + | chr5.3:6410740-6410759 | None:intergenic | 30.0% |
| ! | ATGGATCATAGTTACTTTCA+GGG | - | chr5.3:6410810-6410829 | MS.gene21539:intron | 30.0% |
| ! | CTCTTTTGATAAAAACATGG+AGG | - | chr5.3:6411605-6411624 | MS.gene21539:intron | 30.0% |
| ! | CTGCAAAATCTTTTCCAAAT+GGG | + | chr5.3:6412043-6412062 | None:intergenic | 30.0% |
| ! | TGGCTCTTTTGATAAAAACA+TGG | - | chr5.3:6411602-6411621 | MS.gene21539:intron | 30.0% |
| !! | AAGCAGATTTTGATAAGGTT+AGG | - | chr5.3:6410369-6410388 | MS.gene21539:CDS | 30.0% |
| !! | AGCAGATTTTGATAAGGTTA+GGG | - | chr5.3:6410370-6410389 | MS.gene21539:CDS | 30.0% |
| !! | TAGTTAGTTGATGATCTGAT+AGG | - | chr5.3:6411787-6411806 | MS.gene21539:intron | 30.0% |
| !! | TTAGTTGATGATGACATGAA+TGG | - | chr5.3:6411881-6411900 | MS.gene21539:intron | 30.0% |
| !!! | AGTTTTTGATTTCGCTTCTT+CGG | + | chr5.3:6412238-6412257 | None:intergenic | 30.0% |
| !!! | GGTTTTGTTCTATAAGGATA+TGG | + | chr5.3:6410119-6410138 | None:intergenic | 30.0% |
| !!! | TCCAATGGTTTTGTTCTATA+AGG | + | chr5.3:6410125-6410144 | None:intergenic | 30.0% |
| AAAAACGTAAACCTGATCGT+GGG | - | chr5.3:6412568-6412587 | MS.gene21539:intron | 35.0% | |
| AAATGTTTACCTTTGAGCCT+TGG | + | chr5.3:6411828-6411847 | None:intergenic | 35.0% | |
| ATATTCACCTTGGTCAAACA+TGG | + | chr5.3:6410476-6410495 | None:intergenic | 35.0% | |
| ATCTAGACAGTCCAATCAAA+TGG | + | chr5.3:6410860-6410879 | None:intergenic | 35.0% | |
| ATCTCAGCAAGATGAAAAGA+AGG | - | chr5.3:6410346-6410365 | MS.gene21539:CDS | 35.0% | |
| ATTGAACAATGACAGGATGA+TGG | - | chr5.3:6411976-6411995 | MS.gene21539:intron | 35.0% | |
| CACCTTTGGTTAATGATCAA+TGG | - | chr5.3:6411689-6411708 | MS.gene21539:intron | 35.0% | |
| CCATTGTCATGTGAAAAGAA+GGG | - | chr5.3:6412459-6412478 | MS.gene21539:CDS | 35.0% | |
| GACCATTGATCATTAACCAA+AGG | + | chr5.3:6411694-6411713 | None:intergenic | 35.0% | |
| GGATATTGTTTACTTTGCCA+AGG | - | chr5.3:6411808-6411827 | MS.gene21539:intron | 35.0% | |
| TACACTAGGCTAAAGAAAGA+AGG | - | chr5.3:6411067-6411086 | MS.gene21539:intron | 35.0% | |
| TATTCACCTTGGTCAAACAT+GGG | + | chr5.3:6410475-6410494 | None:intergenic | 35.0% | |
| TCCATTGTCATGTGAAAAGA+AGG | - | chr5.3:6412458-6412477 | MS.gene21539:CDS | 35.0% | |
| TGAATATCAATCTCCCAATC+TGG | - | chr5.3:6410280-6410299 | MS.gene21539:CDS | 35.0% | |
| TGTGTTCAACACAAACTTTC+GGG | + | chr5.3:6411581-6411600 | None:intergenic | 35.0% | |
| TTCAGGGTCATCAAATTTCA+GGG | - | chr5.3:6410826-6410845 | MS.gene21539:intron | 35.0% | |
| TTTCAGGGTCATCAAATTTC+AGG | - | chr5.3:6410825-6410844 | MS.gene21539:intron | 35.0% | |
| ! | AGAAGCGCATTTAATGTCAT+TGG | - | chr5.3:6412158-6412177 | MS.gene21539:intron | 35.0% |
| ! | CACTGCAATAATGTCTTTTC+TGG | + | chr5.3:6412417-6412436 | None:intergenic | 35.0% |
| ! | CCATCAAAGTTTTGCTGATA+GGG | - | chr5.3:6411131-6411150 | MS.gene21539:CDS | 35.0% |
| ! | GATCAGGTTTACGTTTTTGT+GGG | + | chr5.3:6412566-6412585 | None:intergenic | 35.0% |
| ! | GCTGCAAAATCTTTTCCAAA+TGG | + | chr5.3:6412044-6412063 | None:intergenic | 35.0% |
| ! | TTTTTGTAATTCAGAGCCTC+CGG | - | chr5.3:6411395-6411414 | MS.gene21539:intron | 35.0% |
| !! | GAAGGAAGCAGATTTTGATA+AGG | - | chr5.3:6410364-6410383 | MS.gene21539:CDS | 35.0% |
| !!! | ATGATGGTTTTGTTACAACG+AGG | - | chr5.3:6412346-6412365 | MS.gene21539:CDS | 35.0% |
| AGGTTAGGGTTCAAGATGAA+TGG | - | chr5.3:6410384-6410403 | MS.gene21539:CDS | 40.0% | |
| CAAAAACGTAAACCTGATCG+TGG | - | chr5.3:6412567-6412586 | MS.gene21539:intron | 40.0% | |
| CCAATGTCATGGAGATTACA+GGG | - | chr5.3:6412529-6412548 | MS.gene21539:intron | 40.0% | |
| CCCTATCAGCAAAACTTTGA+TGG | + | chr5.3:6411134-6411153 | None:intergenic | 40.0% | |
| GACATTGGACTGTTGAAGAT+TGG | + | chr5.3:6412517-6412536 | None:intergenic | 40.0% | |
| GAGAACCAGTTTCTGATATC+CGG | + | chr5.3:6411417-6411436 | None:intergenic | 40.0% | |
| GATATGGACACATACCAGAA+GGG | + | chr5.3:6410103-6410122 | None:intergenic | 40.0% | |
| GGTTAGGGTTCAAGATGAAT+GGG | - | chr5.3:6410385-6410404 | MS.gene21539:CDS | 40.0% | |
| GTGTTCAACACAAACTTTCG+GGG | + | chr5.3:6411580-6411599 | None:intergenic | 40.0% | |
| TCATGGAGATTACAGGGAAA+TGG | - | chr5.3:6412535-6412554 | MS.gene21539:intron | 40.0% | |
| TCCAATGTCATGGAGATTAC+AGG | - | chr5.3:6412528-6412547 | MS.gene21539:intron | 40.0% | |
| TCTTCAACAGTCCAATGTCA+TGG | - | chr5.3:6412518-6412537 | MS.gene21539:intron | 40.0% | |
| TGAAGGGAATAAGTGTGAAG+AGG | - | chr5.3:6411500-6411519 | MS.gene21539:CDS | 40.0% | |
| TGTTCAACACAAACTTTCGG+GGG | + | chr5.3:6411579-6411598 | None:intergenic | 40.0% | |
| TTGCAGTGTTCAACAAGTAC+AGG | - | chr5.3:6412429-6412448 | MS.gene21539:CDS | 40.0% | |
| TTTACTTTGCCAAGGCTCAA+AGG | - | chr5.3:6411816-6411835 | MS.gene21539:intron | 40.0% | |
| ! | CCCTTCTTTTCACATGACAA+TGG | + | chr5.3:6412462-6412481 | None:intergenic | 40.0% |
| ! | CGATCAGGTTTACGTTTTTG+TGG | + | chr5.3:6412567-6412586 | None:intergenic | 40.0% |
| ! | GCCATCAAAGTTTTGCTGAT+AGG | - | chr5.3:6411130-6411149 | MS.gene21539:CDS | 40.0% |
| ! | GCTAAACATGTGTTGATGTC+AGG | + | chr5.3:6412279-6412298 | None:intergenic | 40.0% |
| !! | CTTTGGGATTGAACAATGAC+AGG | - | chr5.3:6411969-6411988 | MS.gene21539:intron | 40.0% |
| !! | GCATGCTTTTGTACTAGCTT+TGG | + | chr5.3:6412210-6412229 | None:intergenic | 40.0% |
| !!! | TGCTTTTGTACTAGCTTTGG+AGG | + | chr5.3:6412207-6412226 | None:intergenic | 40.0% |
| AACCAATTCCCAACATCAGG+AGG | + | chr5.3:6410251-6410270 | None:intergenic | 45.0% | |
| AACCAGGAGTTCCATGATTC+CGG | + | chr5.3:6412131-6412150 | None:intergenic | 45.0% | |
| AACCAGTTTCTGATATCCGG+AGG | + | chr5.3:6411414-6411433 | None:intergenic | 45.0% | |
| AATCTGGATTCTTGCAGCTC+AGG | - | chr5.3:6411214-6411233 | MS.gene21539:CDS | 45.0% | |
| ACACCGATACAAGTGCAATG+AGG | - | chr5.3:6412181-6412200 | MS.gene21539:intron | 45.0% | |
| AGAGAGAAGCTAGTGCAATG+TGG | - | chr5.3:6410413-6410432 | MS.gene21539:CDS | 45.0% | |
| AGCCTAAGTTGCTTCAAAGC+AGG | + | chr5.3:6412594-6412613 | None:intergenic | 45.0% | |
| AGGCCTCATTGCACTTGTAT+CGG | + | chr5.3:6412187-6412206 | None:intergenic | 45.0% | |
| AGTGCCTTATCTTGCATGCA+TGG | + | chr5.3:6412066-6412085 | None:intergenic | 45.0% | |
| CCCTGTAATCTCCATGACAT+TGG | + | chr5.3:6412532-6412551 | None:intergenic | 45.0% | |
| GAGAACCAATTCCCAACATC+AGG | + | chr5.3:6410254-6410273 | None:intergenic | 45.0% | |
| GGAATAAGTGTGAAGAGGAG+AGG | - | chr5.3:6411505-6411524 | MS.gene21539:CDS | 45.0% | |
| GGATATGGACACATACCAGA+AGG | + | chr5.3:6410104-6410123 | None:intergenic | 45.0% | |
| TATTGCCAGCACTTCCCATT+TGG | - | chr5.3:6412026-6412045 | MS.gene21539:intron | 45.0% | |
| TGCGCTTCTCTATTACAACC+AGG | + | chr5.3:6412147-6412166 | None:intergenic | 45.0% | |
| TTCAACCACGCATAATGAGC+CGG | - | chr5.3:6412101-6412120 | MS.gene21539:intron | 45.0% | |
| TTTCAGAGCCTCCTGATGTT+GGG | - | chr5.3:6410240-6410259 | MS.gene21539:CDS | 45.0% | |
| ! | TGACAGGATGATGGTAGTAC+TGG | - | chr5.3:6411985-6412004 | MS.gene21539:intron | 45.0% |
| ! | TTTTCAGAGCCTCCTGATGT+TGG | - | chr5.3:6410239-6410258 | MS.gene21539:CDS | 45.0% |
| !! | CTTTTCCAAATGGGAAGTGC+TGG | + | chr5.3:6412034-6412053 | None:intergenic | 45.0% |
| !! | GAAGGGTGTTGCAAAGAGAA+AGG | - | chr5.3:6412476-6412495 | MS.gene21539:intron | 45.0% |
| AACCGGAATCATGGAACTCC+TGG | - | chr5.3:6412126-6412145 | MS.gene21539:intron | 50.0% | |
| AGAGGACCCATGTTTGACCA+AGG | - | chr5.3:6410466-6410485 | MS.gene21539:CDS | 50.0% | |
| AGCAACTTAGGCTTGAGCGA+TGG | - | chr5.3:6412601-6412620 | MS.gene21539:intron | 50.0% | |
| AGCCTCCGGATATCAGAAAC+TGG | - | chr5.3:6411409-6411428 | MS.gene21539:intron | 50.0% | |
| AGCCTCCTGATGTTGGGAAT+TGG | - | chr5.3:6410246-6410265 | MS.gene21539:CDS | 50.0% | |
| AGCTCAGGCACACATTTCTC+TGG | - | chr5.3:6411229-6411248 | MS.gene21539:CDS | 50.0% | |
| GAGAAGCTAGTGCAATGTGG+TGG | - | chr5.3:6410416-6410435 | MS.gene21539:CDS | 50.0% | |
| GCAACTTAGGCTTGAGCGAT+GGG | - | chr5.3:6412602-6412621 | MS.gene21539:intron | 50.0% | |
| GCAGCCATGCATGCAAGATA+AGG | - | chr5.3:6412059-6412078 | MS.gene21539:intron | 50.0% | |
| GTTCCATGATTCCGGTTCAC+CGG | + | chr5.3:6412123-6412142 | None:intergenic | 50.0% | |
| TGATTTCGCTTCTTCGGCAG+TGG | + | chr5.3:6412232-6412251 | None:intergenic | 50.0% | |
| !! | GGCCTGCTTTGAAGCAACTT+AGG | - | chr5.3:6412589-6412608 | MS.gene21539:intron | 50.0% |
| CGCATAATGAGCCGGTGAAC+CGG | - | chr5.3:6412109-6412128 | MS.gene21539:intron | 55.0% | |
| TTCAAAGCAGGCCCACGATC+AGG | + | chr5.3:6412582-6412601 | None:intergenic | 55.0% | |
| ! | GAGCGATGGGTTCACAAGGT+TGG | - | chr5.3:6412615-6412634 | MS.gene21539:intron | 55.0% |
| ! | GCTTGAGCGATGGGTTCACA+AGG | - | chr5.3:6412611-6412630 | MS.gene21539:intron | 55.0% |
| !! | GTTCACCGGCTCATTATGCG+TGG | + | chr5.3:6412109-6412128 | None:intergenic | 55.0% |
| GAGCCGGTGAACCGGAATCA+TGG | - | chr5.3:6412117-6412136 | MS.gene21539:intron | 60.0% | |
| TCGTCGTCATCGTGCCCTTC+TGG | - | chr5.3:6410086-6410105 | MS.gene21539:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 6410083 | 6412656 | 6410083 | ID=MS.gene21539 |
| chr5.3 | mRNA | 6410083 | 6412656 | 6410083 | ID=MS.gene21539.t1;Parent=MS.gene21539 |
| chr5.3 | exon | 6412632 | 6412656 | 6412632 | ID=MS.gene21539.t1.exon1;Parent=MS.gene21539.t1 |
| chr5.3 | CDS | 6412632 | 6412656 | 6412632 | ID=cds.MS.gene21539.t1;Parent=MS.gene21539.t1 |
| chr5.3 | exon | 6412252 | 6412493 | 6412252 | ID=MS.gene21539.t1.exon2;Parent=MS.gene21539.t1 |
| chr5.3 | CDS | 6412252 | 6412493 | 6412252 | ID=cds.MS.gene21539.t1;Parent=MS.gene21539.t1 |
| chr5.3 | exon | 6411489 | 6411525 | 6411489 | ID=MS.gene21539.t1.exon3;Parent=MS.gene21539.t1 |
| chr5.3 | CDS | 6411489 | 6411525 | 6411489 | ID=cds.MS.gene21539.t1;Parent=MS.gene21539.t1 |
| chr5.3 | exon | 6411113 | 6411330 | 6411113 | ID=MS.gene21539.t1.exon4;Parent=MS.gene21539.t1 |
| chr5.3 | CDS | 6411113 | 6411330 | 6411113 | ID=cds.MS.gene21539.t1;Parent=MS.gene21539.t1 |
| chr5.3 | exon | 6410083 | 6410748 | 6410083 | ID=MS.gene21539.t1.exon5;Parent=MS.gene21539.t1 |
| chr5.3 | CDS | 6410083 | 6410748 | 6410083 | ID=cds.MS.gene21539.t1;Parent=MS.gene21539.t1 |
| Gene Sequence |
| Protein sequence |
