Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21544.t1 | XP_003591588.1 | 98.8 | 495 | 6 | 0 | 1 | 495 | 1 | 495 | 4.50E-292 | 1013.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21544.t1 | Q40153 | 67.4 | 475 | 153 | 1 | 13 | 487 | 1 | 473 | 4.6e-192 | 672.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21544.t1 | G7I2T4 | 98.8 | 495 | 6 | 0 | 1 | 495 | 1 | 495 | 3.3e-292 | 1013.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006974 | MS.gene21544 | PPI |
| MS.gene21544 | MS.gene02160 | PPI |
| MS.gene02843 | MS.gene21544 | PPI |
| MS.gene21544 | MS.gene003186 | PPI |
| MS.gene048313 | MS.gene21544 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21544.t1 | MTR_1g089290 | 98.788 | 495 | 6 | 0 | 1 | 495 | 1 | 495 | 0.0 | 1020 |
| MS.gene21544.t1 | MTR_2g020720 | 69.954 | 436 | 127 | 2 | 49 | 484 | 32 | 463 | 0.0 | 644 |
| MS.gene21544.t1 | MTR_2g020720 | 71.588 | 359 | 98 | 2 | 49 | 407 | 32 | 386 | 0.0 | 536 |
| MS.gene21544.t1 | MTR_7g086360 | 23.297 | 279 | 143 | 7 | 224 | 465 | 96 | 340 | 2.38e-16 | 80.9 |
| MS.gene21544.t1 | MTR_4g119620 | 26.800 | 250 | 164 | 6 | 224 | 464 | 76 | 315 | 1.22e-15 | 78.2 |
| MS.gene21544.t1 | MTR_1g072140 | 25.311 | 241 | 137 | 5 | 224 | 464 | 109 | 306 | 3.15e-15 | 77.0 |
| MS.gene21544.t1 | MTR_6g004040 | 30.667 | 150 | 93 | 3 | 224 | 373 | 57 | 195 | 1.20e-12 | 70.9 |
| MS.gene21544.t1 | MTR_5g022690 | 31.933 | 119 | 77 | 1 | 224 | 342 | 361 | 475 | 5.31e-11 | 65.1 |
| MS.gene21544.t1 | MTR_8g038550 | 23.554 | 242 | 135 | 7 | 229 | 468 | 228 | 421 | 6.92e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21544.t1 | AT4G03020 | 71.753 | 485 | 132 | 3 | 10 | 491 | 10 | 492 | 0.0 | 724 |
| MS.gene21544.t1 | AT4G03020 | 71.753 | 485 | 132 | 3 | 10 | 491 | 10 | 492 | 0.0 | 724 |
| MS.gene21544.t1 | AT4G03020 | 71.753 | 485 | 132 | 3 | 10 | 491 | 10 | 492 | 0.0 | 724 |
| MS.gene21544.t1 | AT2G43770 | 23.843 | 281 | 139 | 6 | 224 | 465 | 94 | 338 | 4.44e-18 | 85.9 |
| MS.gene21544.t1 | AT3G49660 | 24.542 | 273 | 181 | 7 | 208 | 468 | 53 | 312 | 3.97e-15 | 76.6 |
| MS.gene21544.t1 | AT4G02730 | 26.141 | 241 | 125 | 7 | 224 | 459 | 126 | 318 | 7.43e-12 | 67.0 |
| MS.gene21544.t1 | AT1G11160 | 24.696 | 247 | 138 | 7 | 224 | 469 | 56 | 255 | 1.26e-11 | 67.8 |
| MS.gene21544.t1 | AT1G11160 | 24.696 | 247 | 138 | 6 | 224 | 469 | 56 | 255 | 1.27e-11 | 67.8 |
| MS.gene21544.t1 | AT1G11160 | 24.696 | 247 | 138 | 6 | 224 | 469 | 56 | 255 | 1.36e-11 | 67.8 |
| MS.gene21544.t1 | AT1G11160 | 24.696 | 247 | 138 | 6 | 224 | 469 | 14 | 213 | 1.49e-11 | 67.4 |
| MS.gene21544.t1 | AT5G08390 | 29.333 | 150 | 95 | 3 | 224 | 373 | 57 | 195 | 2.24e-11 | 67.0 |
| MS.gene21544.t1 | AT1G61210 | 23.394 | 218 | 135 | 5 | 265 | 468 | 12 | 211 | 5.05e-11 | 65.9 |
| MS.gene21544.t1 | AT1G61210 | 23.394 | 218 | 135 | 5 | 265 | 468 | 12 | 211 | 7.85e-11 | 65.5 |
| MS.gene21544.t1 | AT1G61210 | 23.394 | 218 | 135 | 5 | 265 | 468 | 12 | 211 | 8.05e-11 | 65.5 |
| MS.gene21544.t1 | AT5G23430 | 28.105 | 153 | 93 | 4 | 224 | 373 | 57 | 195 | 9.32e-11 | 65.1 |
| MS.gene21544.t1 | AT5G23430 | 28.105 | 153 | 93 | 4 | 224 | 373 | 57 | 195 | 9.32e-11 | 65.1 |
| MS.gene21544.t1 | AT5G23430 | 28.105 | 153 | 93 | 4 | 224 | 373 | 57 | 195 | 9.41e-11 | 65.1 |
Find 105 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTCTTACAGGTGATTTA+TGG | 0.181919 | 1.1:-65580484 | None:intergenic |
| CTATGCTCGTTAGCTCTTCT+TGG | 0.255220 | 1.1:+65580528 | MS.gene21544:CDS |
| AGCAGATATTTACCTGTAAA+TGG | 0.272385 | 1.1:+65577071 | MS.gene21544:CDS |
| ATATGATCTTGAAACAAATA+AGG | 0.306324 | 1.1:+65577862 | MS.gene21544:CDS |
| TAGCACTGGAAAATCTAAAA+AGG | 0.311940 | 1.1:+65576860 | MS.gene21544:CDS |
| GACGATGGAGGATACTCTTT+TGG | 0.318718 | 1.1:+65577767 | MS.gene21544:CDS |
| CCTTCCCCGTCCTGAACAAT+TGG | 0.339582 | 1.1:-65577018 | None:intergenic |
| AGCATCTTCACCGGGGAAAC+AGG | 0.359807 | 1.1:-65576981 | None:intergenic |
| ACGTATGTCCCAAAGTTTGA+TGG | 0.361310 | 1.1:-65578772 | None:intergenic |
| TGCACTTTACGTTGACCAAA+TGG | 0.380038 | 1.1:+65576767 | MS.gene21544:CDS |
| TGCCAACTACAATCTCTTAC+AGG | 0.382540 | 1.1:-65580494 | None:intergenic |
| TTCCAGTGCTAGAATCTTCA+AGG | 0.382938 | 1.1:-65576848 | None:intergenic |
| ATAGTTATGTACGCTATATC+TGG | 0.384746 | 1.1:+65576744 | None:intergenic |
| CTTACTAGATGGCTTTGATC+AGG | 0.388290 | 1.1:-65577350 | None:intergenic |
| ATCTGCTGGGAGCTCTGATA+TGG | 0.391469 | 1.1:+65580574 | MS.gene21544:CDS |
| GGCCAGAAGTATATCTATAC+TGG | 0.393179 | 1.1:+65579817 | MS.gene21544:CDS |
| ATCCAGTATAGATATACTTC+TGG | 0.402582 | 1.1:-65579819 | None:intergenic |
| ATAGGCCAAGGACCATTTAC+AGG | 0.415805 | 1.1:-65577083 | None:intergenic |
| GGCCGCGAATCCAATTGTTC+AGG | 0.416503 | 1.1:+65577008 | MS.gene21544:CDS |
| CGTATGCTCGACTAGGCATT+TGG | 0.426545 | 1.1:-65577109 | None:intergenic |
| TACTCATAGCATAACCCATT+TGG | 0.431168 | 1.1:-65576782 | None:intergenic |
| AGATCAGACCATCAAACTTT+GGG | 0.433353 | 1.1:+65578764 | MS.gene21544:CDS |
| GGGATGGAGATGTTGTAAAA+TGG | 0.435817 | 1.1:+65580549 | MS.gene21544:CDS |
| AAGATCAGACCATCAAACTT+TGG | 0.439366 | 1.1:+65578763 | MS.gene21544:CDS |
| TATGCTCGTTAGCTCTTCTT+GGG | 0.443104 | 1.1:+65580529 | MS.gene21544:CDS |
| GATGGGAGGGAATTAGTTGC+AGG | 0.457956 | 1.1:+65577815 | MS.gene21544:CDS |
| AATTTCAGTAACCGTGTTCG+TGG | 0.462360 | 1.1:+65579471 | MS.gene21544:intron |
| ATGTGTTTATGTATATGATT+TGG | 0.470295 | 1.1:+65579852 | MS.gene21544:CDS |
| ATCGTACACATTGTAAATGT+TGG | 0.472091 | 1.1:+65577491 | MS.gene21544:CDS |
| ATTTACCTGTAAATGGTCCT+TGG | 0.479935 | 1.1:+65577078 | MS.gene21544:CDS |
| CGGCCTGCCAGCATCTTCAC+CGG | 0.481898 | 1.1:-65576990 | None:intergenic |
| CAGTCAGTGGCTACGTATAG+AGG | 0.482615 | 1.1:+65579570 | MS.gene21544:CDS |
| GCACTTTACGTTGACCAAAT+GGG | 0.482739 | 1.1:+65576768 | MS.gene21544:CDS |
| CGAATCCAATTGTTCAGGAC+GGG | 0.482995 | 1.1:+65577013 | MS.gene21544:CDS |
| ATCCTTGAAGATTCTAGCAC+TGG | 0.486362 | 1.1:+65576846 | MS.gene21544:CDS |
| TCCCCGGTGAAGATGCTGGC+AGG | 0.486810 | 1.1:+65576987 | MS.gene21544:CDS |
| CTCGTTAGCTCTTCTTGGGA+TGG | 0.489305 | 1.1:+65580533 | MS.gene21544:CDS |
| TGAATGGGATTACAGGTGGA+TGG | 0.490487 | 1.1:+65579506 | MS.gene21544:CDS |
| GTCCTGAACAATTGGATTCG+CGG | 0.491213 | 1.1:-65577010 | None:intergenic |
| ACTGGCCATCTTATTTACTC+TGG | 0.494750 | 1.1:+65578280 | MS.gene21544:CDS |
| GAAAGAGTTGCCTGTTTCCC+CGG | 0.495375 | 1.1:+65576971 | MS.gene21544:CDS |
| TATACAATGTGGACAAAGGT+TGG | 0.499477 | 1.1:+65577264 | MS.gene21544:CDS |
| CTGCTAGTACATGATGGGTC+TGG | 0.500073 | 1.1:+65576945 | MS.gene21544:CDS |
| TTACTAGATGGCTTTGATCA+GGG | 0.501289 | 1.1:-65577349 | None:intergenic |
| CTCTGATATGGCAGCCTCGT+CGG | 0.501439 | 1.1:+65580586 | MS.gene21544:CDS |
| GGACGCTATTTCATTTCAAA+CGG | 0.501559 | 1.1:+65578738 | MS.gene21544:CDS |
| CATCAACTGCTAGTACATGA+TGG | 0.505267 | 1.1:+65576939 | MS.gene21544:CDS |
| CAAGAAGAGCTAACGAGCAT+AGG | 0.505730 | 1.1:-65580527 | None:intergenic |
| CACCTGTAAGAGATTGTAGT+TGG | 0.509483 | 1.1:+65580492 | MS.gene21544:CDS |
| TGTCCCATCAAAACCCCTGC+CGG | 0.512728 | 1.1:-65578678 | None:intergenic |
| GTAACCGTGTTCGTGGATAT+AGG | 0.517492 | 1.1:+65579478 | MS.gene21544:intron |
| CCAATTGTTCAGGACGGGGA+AGG | 0.517976 | 1.1:+65577018 | MS.gene21544:CDS |
| TGTTTCCCCGGTGAAGATGC+TGG | 0.519063 | 1.1:+65576983 | MS.gene21544:CDS |
| AATGCTAAAGACAAGCCGGC+AGG | 0.520946 | 1.1:+65578663 | MS.gene21544:CDS |
| TTTATTGATACCCGTGGAGA+TGG | 0.521044 | 1.1:+65578717 | MS.gene21544:CDS |
| TTTAGTGGTCACCTAAAAGC+TGG | 0.522377 | 1.1:-65579633 | None:intergenic |
| CAATAAATGTAATGCCCTCA+AGG | 0.532155 | 1.1:-65578701 | None:intergenic |
| AAGAGCATACCTGGTAACAT+TGG | 0.534358 | 1.1:-65578805 | None:intergenic |
| GTTGTAAAATGGCAATCTGC+TGG | 0.535124 | 1.1:+65580560 | MS.gene21544:CDS |
| TGCTAAAGACAAGCCGGCAG+GGG | 0.535291 | 1.1:+65578665 | MS.gene21544:CDS |
| GACTCTAGTGATACTGAAGA+TGG | 0.540581 | 1.1:+65576816 | MS.gene21544:CDS |
| CAAGAGTGCGTAAGACTGAA+TGG | 0.543044 | 1.1:-65579593 | None:intergenic |
| GATGATTCATTACAGGTGAG+TGG | 0.544157 | 1.1:+65580437 | MS.gene21544:intron |
| CGACTAGGCATTTGGTCGAT+AGG | 0.547791 | 1.1:-65577101 | None:intergenic |
| TACTAGATGGCTTTGATCAG+GGG | 0.548826 | 1.1:-65577348 | None:intergenic |
| GCAGGAGATCCACGATGGGT+TGG | 0.550911 | 1.1:+65577730 | MS.gene21544:intron |
| GGCCTGCCAGCATCTTCACC+GGG | 0.553632 | 1.1:-65576989 | None:intergenic |
| AAGAAGAGCTAACGAGCATA+GGG | 0.554781 | 1.1:-65580526 | None:intergenic |
| ATGCTAAAGACAAGCCGGCA+GGG | 0.560101 | 1.1:+65578664 | MS.gene21544:CDS |
| CACTTCCAGAGTAAATAAGA+TGG | 0.565103 | 1.1:-65578285 | None:intergenic |
| CTTAAATGCTAAAGACAAGC+CGG | 0.577168 | 1.1:+65578659 | MS.gene21544:CDS |
| ACATTTACAATGTGTACGAT+AGG | 0.581114 | 1.1:-65577488 | None:intergenic |
| ATCAACTGCTAGTACATGAT+GGG | 0.581257 | 1.1:+65576940 | MS.gene21544:CDS |
| TTGTAAAATGGCAATCTGCT+GGG | 0.586915 | 1.1:+65580561 | MS.gene21544:CDS |
| GAAATAGCGTCCATCTCCAC+GGG | 0.592069 | 1.1:-65578727 | None:intergenic |
| TGAAATAGCGTCCATCTCCA+CGG | 0.592795 | 1.1:-65578728 | None:intergenic |
| ATGAGGTGTTGATTTCAACT+TGG | 0.593854 | 1.1:-65576919 | None:intergenic |
| AAATGTCATCCAATGTTACC+AGG | 0.595793 | 1.1:+65578796 | MS.gene21544:CDS |
| AAAATATACAATGTGGACAA+AGG | 0.599948 | 1.1:+65577260 | MS.gene21544:CDS |
| AGCCTCGTCGGTTAAGAAGA+GGG | 0.600390 | 1.1:+65580598 | MS.gene21544:CDS |
| CAGCCTCGTCGGTTAAGAAG+AGG | 0.601348 | 1.1:+65580597 | MS.gene21544:CDS |
| GAATTAGTTGCAGGAACTAG+TGG | 0.606878 | 1.1:+65577824 | MS.gene21544:CDS |
| TTCTAACTAAGAGTTTGAGA+TGG | 0.609877 | 1.1:+65577303 | MS.gene21544:CDS |
| CTAACGAGCATAGGGTGGAA+AGG | 0.614104 | 1.1:-65580518 | None:intergenic |
| TAGTACATGATGGGTCTGGA+AGG | 0.615748 | 1.1:+65576949 | MS.gene21544:CDS |
| GCGAATCCAATTGTTCAGGA+CGG | 0.617169 | 1.1:+65577012 | MS.gene21544:CDS |
| TGAGACACGTATGCTCGACT+AGG | 0.624491 | 1.1:-65577116 | None:intergenic |
| AACTCCTATATCCACGAACA+CGG | 0.626589 | 1.1:-65579482 | None:intergenic |
| GGCATTTGGTCGATAGGCCA+AGG | 0.629750 | 1.1:-65577095 | None:intergenic |
| GAATCCAATTGTTCAGGACG+GGG | 0.630776 | 1.1:+65577014 | MS.gene21544:CDS |
| AGTTTCATCAGCAAAACATA+CGG | 0.631088 | 1.1:-65578260 | None:intergenic |
| GTGTACGATAGGTGACATGC+TGG | 0.632627 | 1.1:-65577477 | None:intergenic |
| TGCTATGAGTAGATTAGACG+TGG | 0.632706 | 1.1:+65576794 | MS.gene21544:CDS |
| AAGAGCTAACGAGCATAGGG+TGG | 0.635204 | 1.1:-65580523 | None:intergenic |
| TCATGTACTAGCAGTTGATG+AGG | 0.637096 | 1.1:-65576936 | None:intergenic |
| ATTACATTTATTGATACCCG+TGG | 0.637357 | 1.1:+65578711 | MS.gene21544:CDS |
| CAAAAGATGACAGCGATCAG+CGG | 0.644029 | 1.1:-65577048 | None:intergenic |
| AAGTGATGATAGTTTCTGCA+AGG | 0.652431 | 1.1:+65578303 | MS.gene21544:CDS |
| AATATGCAGGAGATCCACGA+TGG | 0.665955 | 1.1:+65577725 | MS.gene21544:intron |
| TCATCCTTGTGATCAGTCAG+TGG | 0.674274 | 1.1:+65579557 | MS.gene21544:CDS |
| GTAGCCACTGACTGATCACA+AGG | 0.680555 | 1.1:-65579561 | None:intergenic |
| ATATGCAGGAGATCCACGAT+GGG | 0.686383 | 1.1:+65577726 | MS.gene21544:intron |
| AGAGTCACTAGCAAATGTGA+CGG | 0.704087 | 1.1:+65577526 | MS.gene21544:CDS |
| TACCCTCTTCTTAACCGACG+AGG | 0.713771 | 1.1:-65580600 | None:intergenic |
| GCCTGCCAGCATCTTCACCG+GGG | 0.715871 | 1.1:-65576988 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAATTATAAAACTTG+AGG | - | chr1.1:65579993-65580012 | None:intergenic | 10.0% |
| !! | AAATAAATTATAAAACTTGA+GGG | - | chr1.1:65579992-65580011 | None:intergenic | 10.0% |
| !! | AAGAAAAATAATTGATTAAA+AGG | - | chr1.1:65577401-65577420 | None:intergenic | 10.0% |
| !!! | CTAAATTAATTTATTTTTCA+GGG | + | chr1.1:65577227-65577246 | MS.gene21544:intron | 10.0% |
| !!! | TCTAAATTAATTTATTTTTC+AGG | + | chr1.1:65577226-65577245 | MS.gene21544:intron | 10.0% |
| !! | AAATAGTATAATCTATAACT+AGG | + | chr1.1:65579934-65579953 | MS.gene21544:intron | 15.0% |
| !! | AATAAATTATAAAACTTGAG+GGG | - | chr1.1:65579991-65580010 | None:intergenic | 15.0% |
| !! | AATAGTATAATCTATAACTA+GGG | + | chr1.1:65579935-65579954 | MS.gene21544:intron | 15.0% |
| !! | CTAAATAGATGTAATATTTA+TGG | - | chr1.1:65577927-65577946 | None:intergenic | 15.0% |
| !! | TTGATAAATTATTCAATCAT+TGG | - | chr1.1:65580045-65580064 | None:intergenic | 15.0% |
| !!! | AAAAGATGAAATTTAAGATT+TGG | + | chr1.1:65580099-65580118 | MS.gene21544:intron | 15.0% |
| !!! | AGATTTTATGTTTTTATCAT+CGG | + | chr1.1:65579900-65579919 | MS.gene21544:intron | 15.0% |
| !!! | TGTAATGTATTATTTTTAAG+CGG | + | chr1.1:65580339-65580358 | MS.gene21544:intron | 15.0% |
| !! | AATTATGTTGTAAAATTGTG+AGG | + | chr1.1:65579165-65579184 | MS.gene21544:intron | 20.0% |
| !! | ACTGAAATTTAGAGAAAAAT+CGG | - | chr1.1:65579460-65579479 | None:intergenic | 20.0% |
| !! | ATAGTATAATCTATAACTAG+GGG | + | chr1.1:65579936-65579955 | MS.gene21544:intron | 20.0% |
| !! | ATATGATCTTGAAACAAATA+AGG | + | chr1.1:65577862-65577881 | MS.gene21544:CDS | 20.0% |
| !! | ATGTGTTTATGTATATGATT+TGG | + | chr1.1:65579852-65579871 | MS.gene21544:CDS | 20.0% |
| !! | CTTGAGCATATTAAAATTAT+TGG | + | chr1.1:65579737-65579756 | MS.gene21544:intron | 20.0% |
| !! | TAAATTAGACGACTTATATT+AGG | + | chr1.1:65579050-65579069 | MS.gene21544:intron | 20.0% |
| !! | TAAATTATAGATTCAGACAA+TGG | - | chr1.1:65577966-65577985 | None:intergenic | 20.0% |
| !! | TCTAATGTACAAAATTGTTT+AGG | + | chr1.1:65578620-65578639 | MS.gene21544:intron | 20.0% |
| !! | TTCATATAATTCAACAGATA+TGG | - | chr1.1:65578846-65578865 | None:intergenic | 20.0% |
| !! | TTGTCTGAATCTATAATTTA+TGG | + | chr1.1:65577966-65577985 | MS.gene21544:intron | 20.0% |
| !!! | AAACTCTGTATTTTTCATTT+TGG | - | chr1.1:65579249-65579268 | None:intergenic | 20.0% |
| ! | AAAACTATAGATGCATACAT+AGG | - | chr1.1:65577203-65577222 | None:intergenic | 25.0% |
| ! | AAAATATACAATGTGGACAA+AGG | + | chr1.1:65577260-65577279 | MS.gene21544:CDS | 25.0% |
| ! | AAACTATAGATGCATACATA+GGG | - | chr1.1:65577202-65577221 | None:intergenic | 25.0% |
| ! | AATTTGAAGAAAACAACATC+AGG | - | chr1.1:65579788-65579807 | None:intergenic | 25.0% |
| ! | ACCAAAATTTAGAAAACCTA+TGG | - | chr1.1:65578210-65578229 | None:intergenic | 25.0% |
| ! | CAGAAAGTTTATATTGTAGT+TGG | + | chr1.1:65578553-65578572 | MS.gene21544:intron | 25.0% |
| ! | CCACATAAAAATATACAATG+TGG | + | chr1.1:65577253-65577272 | MS.gene21544:CDS | 25.0% |
| ! | GAAAATGAAGAATGATGAAA+AGG | - | chr1.1:65579668-65579687 | None:intergenic | 25.0% |
| ! | GAGATACTGCTTATAAAATT+CGG | - | chr1.1:65580308-65580327 | None:intergenic | 25.0% |
| ! | GTATACTTGTGAATTATCTA+TGG | + | chr1.1:65579192-65579211 | MS.gene21544:intron | 25.0% |
| ! | GTCCAAATATGAAAATCAAA+GGG | - | chr1.1:65579703-65579722 | None:intergenic | 25.0% |
| ! | TAGTATAATCTATAACTAGG+GGG | + | chr1.1:65579937-65579956 | MS.gene21544:intron | 25.0% |
| ! | TCCAAATATGAAAATCAAAG+GGG | - | chr1.1:65579702-65579721 | None:intergenic | 25.0% |
| ! | TCTATGTGAAATCAAAAGTT+GGG | - | chr1.1:65578398-65578417 | None:intergenic | 25.0% |
| ! | TGTCCAAATATGAAAATCAA+AGG | - | chr1.1:65579704-65579723 | None:intergenic | 25.0% |
| ! | TTCTATGTGAAATCAAAAGT+TGG | - | chr1.1:65578399-65578418 | None:intergenic | 25.0% |
| ! | TTTCAGTTCTTATAATATGC+AGG | + | chr1.1:65577712-65577731 | MS.gene21544:intron | 25.0% |
| !! | AAACTTTGATGATTCATTAC+AGG | + | chr1.1:65580430-65580449 | MS.gene21544:intron | 25.0% |
| !! | AAAGTATTTACACATACCAT+AGG | + | chr1.1:65578191-65578210 | MS.gene21544:intron | 25.0% |
| !! | AAATCATTTTCATATTGGGA+TGG | + | chr1.1:65578154-65578173 | MS.gene21544:intron | 25.0% |
| !! | AACTGTCATAGTTTTTCTTA+TGG | + | chr1.1:65577425-65577444 | MS.gene21544:intron | 25.0% |
| !! | ACCATAGGTTTTCTAAATTT+TGG | + | chr1.1:65578206-65578225 | MS.gene21544:intron | 25.0% |
| !! | ATATAGAATTAGCTTAGTCT+CGG | - | chr1.1:65579405-65579424 | None:intergenic | 25.0% |
| !! | ATGAAATTTAAGATTTGGAG+TGG | + | chr1.1:65580104-65580123 | MS.gene21544:intron | 25.0% |
| !! | CTAATATTTTCATGCAGAAA+TGG | - | chr1.1:65580069-65580088 | None:intergenic | 25.0% |
| !! | CTATTTAGCTTCATATGATT+TGG | + | chr1.1:65577939-65577958 | MS.gene21544:intron | 25.0% |
| !! | GGAGAAATCATTTTCATATT+GGG | + | chr1.1:65578150-65578169 | MS.gene21544:intron | 25.0% |
| !! | TGGAGAAATCATTTTCATAT+TGG | + | chr1.1:65578149-65578168 | MS.gene21544:intron | 25.0% |
| !!! | CAAGGCATTGTATTTTTATT+GGG | - | chr1.1:65580401-65580420 | None:intergenic | 25.0% |
| !!! | CCACATTGTATATTTTTATG+TGG | - | chr1.1:65577256-65577275 | None:intergenic | 25.0% |
| AATCTCTTACAGGTGATTTA+TGG | - | chr1.1:65580487-65580506 | None:intergenic | 30.0% | |
| ACATTTACAATGTGTACGAT+AGG | - | chr1.1:65577491-65577510 | None:intergenic | 30.0% | |
| ACTCTAAATTTCCATGAACA+AGG | - | chr1.1:65578991-65579010 | None:intergenic | 30.0% | |
| AGCAGATATTTACCTGTAAA+TGG | + | chr1.1:65577071-65577090 | MS.gene21544:CDS | 30.0% | |
| AGGTATGTTCTACAATAAGA+TGG | + | chr1.1:65578323-65578342 | MS.gene21544:intron | 30.0% | |
| AGTAAAATACACCTTGTTCA+TGG | + | chr1.1:65578977-65578996 | MS.gene21544:intron | 30.0% | |
| AGTTTCATCAGCAAAACATA+CGG | - | chr1.1:65578263-65578282 | None:intergenic | 30.0% | |
| ATCCAGTATAGATATACTTC+TGG | - | chr1.1:65579822-65579841 | None:intergenic | 30.0% | |
| ATCGTACACATTGTAAATGT+TGG | + | chr1.1:65577491-65577510 | MS.gene21544:CDS | 30.0% | |
| ATCTCATACTTATATCGTCA+AGG | + | chr1.1:65578448-65578467 | MS.gene21544:intron | 30.0% | |
| ATGAAAAGAACACCATCAAA+CGG | - | chr1.1:65577679-65577698 | None:intergenic | 30.0% | |
| ATTACATTTATTGATACCCG+TGG | + | chr1.1:65578711-65578730 | MS.gene21544:CDS | 30.0% | |
| CATTTGCATTCTTCAATTTC+AGG | + | chr1.1:65577448-65577467 | MS.gene21544:intron | 30.0% | |
| CCAAAGATCATAATTCAATG+TGG | - | chr1.1:65577555-65577574 | None:intergenic | 30.0% | |
| CCACATTGAATTATGATCTT+TGG | + | chr1.1:65577552-65577571 | MS.gene21544:intron | 30.0% | |
| CTAATGCATAATAGAGATAC+AGG | + | chr1.1:65579114-65579133 | MS.gene21544:intron | 30.0% | |
| GTACAAAATTGTTTAGGTCT+GGG | + | chr1.1:65578626-65578645 | MS.gene21544:intron | 30.0% | |
| TAAAAGTGAAAATGCTTACC+TGG | - | chr1.1:65577178-65577197 | None:intergenic | 30.0% | |
| TAAAATTCGGTTATGAACAG+CGG | - | chr1.1:65580295-65580314 | None:intergenic | 30.0% | |
| TCAAAGTTTCTTATTGAGCA+AGG | - | chr1.1:65580419-65580438 | None:intergenic | 30.0% | |
| TCAGAGGAATAGATACAAAT+TGG | + | chr1.1:65577614-65577633 | MS.gene21544:intron | 30.0% | |
| TGAAGAATGATGAAAAGGTA+AGG | - | chr1.1:65579663-65579682 | None:intergenic | 30.0% | |
| TGGGAAAGATAAAATTCATG+TGG | + | chr1.1:65578922-65578941 | MS.gene21544:intron | 30.0% | |
| TGTACAAAATTGTTTAGGTC+TGG | + | chr1.1:65578625-65578644 | MS.gene21544:intron | 30.0% | |
| TTCTAACTAAGAGTTTGAGA+TGG | + | chr1.1:65577303-65577322 | MS.gene21544:CDS | 30.0% | |
| TTTCTTCAAATTTACAGCAC+TGG | + | chr1.1:65579796-65579815 | MS.gene21544:intron | 30.0% | |
| ! | CTGTGAAATTTTCAACAGAT+GGG | + | chr1.1:65577798-65577817 | MS.gene21544:CDS | 30.0% |
| ! | GATTTTTCATCAAATGACGA+TGG | + | chr1.1:65577752-65577771 | MS.gene21544:CDS | 30.0% |
| ! | TAGCACTGGAAAATCTAAAA+AGG | + | chr1.1:65576860-65576879 | MS.gene21544:CDS | 30.0% |
| ! | TCTGTGAAATTTTCAACAGA+TGG | + | chr1.1:65577797-65577816 | MS.gene21544:CDS | 30.0% |
| !! | AACTCTAGTTAACTTGTATC+TGG | + | chr1.1:65579025-65579044 | MS.gene21544:intron | 30.0% |
| !! | TAGTAGTTTGCTGATTGTTT+AGG | - | chr1.1:65580176-65580195 | None:intergenic | 30.0% |
| !! | TCCCCTTTGATTTTCATATT+TGG | + | chr1.1:65579698-65579717 | MS.gene21544:intron | 30.0% |
| !! | TTTAGGCATTTTGCTATGTT+CGG | - | chr1.1:65580159-65580178 | None:intergenic | 30.0% |
| !!! | GAGTATTAGAGTTTTGTTCA+TGG | + | chr1.1:65580241-65580260 | MS.gene21544:intron | 30.0% |
| !!! | GCAAGGCATTGTATTTTTAT+TGG | - | chr1.1:65580402-65580421 | None:intergenic | 30.0% |
| !!! | TGGATATAGGAGTTTTGAAT+GGG | + | chr1.1:65579491-65579510 | MS.gene21544:CDS | 30.0% |
| !!! | TTTTCTAAGATGTCTGTAAC+TGG | + | chr1.1:65577638-65577657 | MS.gene21544:intron | 30.0% |
| AAAGCCATCTAGTAAGTAAC+TGG | + | chr1.1:65577357-65577376 | MS.gene21544:intron | 35.0% | |
| AAATGTCATCCAATGTTACC+AGG | + | chr1.1:65578796-65578815 | MS.gene21544:CDS | 35.0% | |
| AAGATCAGACCATCAAACTT+TGG | + | chr1.1:65578763-65578782 | MS.gene21544:CDS | 35.0% | |
| AAGTGATGATAGTTTCTGCA+AGG | + | chr1.1:65578303-65578322 | MS.gene21544:CDS | 35.0% | |
| ACCTTATAGAAATGTGTGCT+CGG | - | chr1.1:65579145-65579164 | None:intergenic | 35.0% | |
| AGATCAGACCATCAAACTTT+GGG | + | chr1.1:65578764-65578783 | MS.gene21544:CDS | 35.0% | |
| AGATTGAACTCCTGTGTAAA+AGG | - | chr1.1:65578432-65578451 | None:intergenic | 35.0% | |
| ATCAACTGCTAGTACATGAT+GGG | + | chr1.1:65576940-65576959 | MS.gene21544:CDS | 35.0% | |
| ATTTACCTGTAAATGGTCCT+TGG | + | chr1.1:65577078-65577097 | MS.gene21544:CDS | 35.0% | |
| ATTTATGGTGCAGTTTGAAG+CGG | + | chr1.1:65577981-65578000 | MS.gene21544:intron | 35.0% | |
| CAAAAGTTGGGATACTCAAA+AGG | - | chr1.1:65578386-65578405 | None:intergenic | 35.0% | |
| CAACAGATATGGATACCAAA+AGG | - | chr1.1:65578835-65578854 | None:intergenic | 35.0% | |
| CAATAAATGTAATGCCCTCA+AGG | - | chr1.1:65578704-65578723 | None:intergenic | 35.0% | |
| CACTTCCAGAGTAAATAAGA+TGG | - | chr1.1:65578288-65578307 | None:intergenic | 35.0% | |
| CTTAAATGCTAAAGACAAGC+CGG | + | chr1.1:65578659-65578678 | MS.gene21544:CDS | 35.0% | |
| GACACTGTCAATAGATTAAG+TGG | - | chr1.1:65578065-65578084 | None:intergenic | 35.0% | |
| GTTTCCAGTTACTTACTAGA+TGG | - | chr1.1:65577364-65577383 | None:intergenic | 35.0% | |
| TACTCATAGCATAACCCATT+TGG | - | chr1.1:65576785-65576804 | None:intergenic | 35.0% | |
| TATACAATGTGGACAAAGGT+TGG | + | chr1.1:65577264-65577283 | MS.gene21544:CDS | 35.0% | |
| TATGATTGTTCGCAATGCAA+AGG | + | chr1.1:65579422-65579441 | MS.gene21544:intron | 35.0% | |
| TTGTAAAATGGCAATCTGCT+GGG | + | chr1.1:65580561-65580580 | MS.gene21544:CDS | 35.0% | |
| ! | AGTTTGCTTAGCTGCATAAT+AGG | + | chr1.1:65578032-65578051 | MS.gene21544:intron | 35.0% |
| ! | GAAATTTTCAACAGATGGGA+GGG | + | chr1.1:65577802-65577821 | MS.gene21544:CDS | 35.0% |
| ! | GGACGCTATTTCATTTCAAA+CGG | + | chr1.1:65578738-65578757 | MS.gene21544:CDS | 35.0% |
| ! | GTAATGAACACCTTTTACAC+AGG | + | chr1.1:65578419-65578438 | MS.gene21544:intron | 35.0% |
| ! | GTATGTTTTGCTGATGAAAC+TGG | + | chr1.1:65578262-65578281 | MS.gene21544:CDS | 35.0% |
| ! | TGAAATTTTCAACAGATGGG+AGG | + | chr1.1:65577801-65577820 | MS.gene21544:CDS | 35.0% |
| ! | TGATTCAAGTCTTTTGCTTG+TGG | - | chr1.1:65579540-65579559 | None:intergenic | 35.0% |
| ! | TTTTCATCAAATGACGATGG+AGG | + | chr1.1:65577755-65577774 | MS.gene21544:CDS | 35.0% |
| !! | ATGAGGTGTTGATTTCAACT+TGG | - | chr1.1:65576922-65576941 | None:intergenic | 35.0% |
| !! | GTTTTGAATGCTATGATCAG+AGG | + | chr1.1:65577598-65577617 | MS.gene21544:intron | 35.0% |
| !! | TTACTAGATGGCTTTGATCA+GGG | - | chr1.1:65577352-65577371 | None:intergenic | 35.0% |
| !! | TTGGTTTTCATTTTACGTGC+AGG | + | chr1.1:65578225-65578244 | MS.gene21544:intron | 35.0% |
| !!! | ATGGTTCACTTTTTGTTGCT+GGG | + | chr1.1:65577150-65577169 | MS.gene21544:CDS | 35.0% |
| !!! | GTGGATATAGGAGTTTTGAA+TGG | + | chr1.1:65579490-65579509 | MS.gene21544:CDS | 35.0% |
| AAAAGGTAAGGCCAGTTTAG+TGG | - | chr1.1:65579651-65579670 | None:intergenic | 40.0% | |
| AACCATAAGTCTGTGACTGA+TGG | + | chr1.1:65579076-65579095 | MS.gene21544:intron | 40.0% | |
| AACTCCTATATCCACGAACA+CGG | - | chr1.1:65579485-65579504 | None:intergenic | 40.0% | |
| AAGAAGAGCTAACGAGCATA+GGG | - | chr1.1:65580529-65580548 | None:intergenic | 40.0% | |
| AAGTTGGGATACTCAAAAGG+AGG | - | chr1.1:65578383-65578402 | None:intergenic | 40.0% | |
| AATCTATAACTAGGGGGAAG+AGG | + | chr1.1:65579943-65579962 | MS.gene21544:intron | 40.0% | |
| AATTTCAGTAACCGTGTTCG+TGG | + | chr1.1:65579471-65579490 | MS.gene21544:intron | 40.0% | |
| ACCATAAGTCTGTGACTGAT+GGG | + | chr1.1:65579077-65579096 | MS.gene21544:intron | 40.0% | |
| ACGTATGTCCCAAAGTTTGA+TGG | - | chr1.1:65578775-65578794 | None:intergenic | 40.0% | |
| AGAGTCACTAGCAAATGTGA+CGG | + | chr1.1:65577526-65577545 | MS.gene21544:CDS | 40.0% | |
| AGGAACAGACAACATTAGCT+AGG | - | chr1.1:65579380-65579399 | None:intergenic | 40.0% | |
| AGTTGGGATACTCAAAAGGA+GGG | - | chr1.1:65578382-65578401 | None:intergenic | 40.0% | |
| ATCCTTGAAGATTCTAGCAC+TGG | + | chr1.1:65576846-65576865 | MS.gene21544:CDS | 40.0% | |
| ATCTATAACTAGGGGGAAGA+GGG | + | chr1.1:65579944-65579963 | MS.gene21544:intron | 40.0% | |
| ATGAAAAATCCAACCCATCG+TGG | - | chr1.1:65577742-65577761 | None:intergenic | 40.0% | |
| ATGTACAAGGTTCCGTTTGA+TGG | + | chr1.1:65577664-65577683 | MS.gene21544:intron | 40.0% | |
| CACCTGTAAGAGATTGTAGT+TGG | + | chr1.1:65580492-65580511 | MS.gene21544:CDS | 40.0% | |
| CATCAACTGCTAGTACATGA+TGG | + | chr1.1:65576939-65576958 | MS.gene21544:CDS | 40.0% | |
| CTGTAACTGGTGTATGTACA+AGG | + | chr1.1:65577651-65577670 | MS.gene21544:intron | 40.0% | |
| GAATTAGTTGCAGGAACTAG+TGG | + | chr1.1:65577824-65577843 | MS.gene21544:CDS | 40.0% | |
| GACACAGAATCATCGTTGAT+TGG | - | chr1.1:65579317-65579336 | None:intergenic | 40.0% | |
| GACTCTAGTGATACTGAAGA+TGG | + | chr1.1:65576816-65576835 | MS.gene21544:CDS | 40.0% | |
| GATGATTCATTACAGGTGAG+TGG | + | chr1.1:65580437-65580456 | MS.gene21544:intron | 40.0% | |
| GCACTTTACGTTGACCAAAT+GGG | + | chr1.1:65576768-65576787 | MS.gene21544:CDS | 40.0% | |
| GGGATGGAGATGTTGTAAAA+TGG | + | chr1.1:65580549-65580568 | MS.gene21544:CDS | 40.0% | |
| GTTGTAAAATGGCAATCTGC+TGG | + | chr1.1:65580560-65580579 | MS.gene21544:CDS | 40.0% | |
| TCCGAGCACACATTTCTATA+AGG | + | chr1.1:65579141-65579160 | MS.gene21544:intron | 40.0% | |
| TCTCCTTGAACTTTGATTCC+TGG | + | chr1.1:65580264-65580283 | MS.gene21544:intron | 40.0% | |
| TGCACTTTACGTTGACCAAA+TGG | + | chr1.1:65576767-65576786 | MS.gene21544:CDS | 40.0% | |
| TGCCAACTACAATCTCTTAC+AGG | - | chr1.1:65580497-65580516 | None:intergenic | 40.0% | |
| TGCTATGAGTAGATTAGACG+TGG | + | chr1.1:65576794-65576813 | MS.gene21544:CDS | 40.0% | |
| TTCCAGTGCTAGAATCTTCA+AGG | - | chr1.1:65576851-65576870 | None:intergenic | 40.0% | |
| TTTAGTGGTCACCTAAAAGC+TGG | - | chr1.1:65579636-65579655 | None:intergenic | 40.0% | |
| TTTATTGATACCCGTGGAGA+TGG | + | chr1.1:65578717-65578736 | MS.gene21544:CDS | 40.0% | |
| ! | AAAGGCTAAAAGAGCATACC+TGG | - | chr1.1:65578817-65578836 | None:intergenic | 40.0% |
| ! | AAGAGCATACCTGGTAACAT+TGG | - | chr1.1:65578808-65578827 | None:intergenic | 40.0% |
| ! | ACTGGCCATCTTATTTACTC+TGG | + | chr1.1:65578280-65578299 | MS.gene21544:CDS | 40.0% |
| ! | CATATTGGGATGGCTCTATA+TGG | + | chr1.1:65578164-65578183 | MS.gene21544:intron | 40.0% |
| ! | GAATTAGCTTAGTCTCGGAT+AGG | - | chr1.1:65579400-65579419 | None:intergenic | 40.0% |
| ! | GGCCAGAAGTATATCTATAC+TGG | + | chr1.1:65579817-65579836 | MS.gene21544:CDS | 40.0% |
| ! | TATGCTCGTTAGCTCTTCTT+GGG | + | chr1.1:65580529-65580548 | MS.gene21544:CDS | 40.0% |
| ! | TCATGTACTAGCAGTTGATG+AGG | - | chr1.1:65576939-65576958 | None:intergenic | 40.0% |
| ! | TTCAAGTCTTTTGCTTGTGG+CGG | - | chr1.1:65579537-65579556 | None:intergenic | 40.0% |
| ! | TTTATGGTGCAGTTTGAAGC+GGG | + | chr1.1:65577982-65578001 | MS.gene21544:intron | 40.0% |
| !! | CTTACTAGATGGCTTTGATC+AGG | - | chr1.1:65577353-65577372 | None:intergenic | 40.0% |
| !! | CTTTTAGGTGACCACTAAAC+TGG | + | chr1.1:65579637-65579656 | MS.gene21544:intron | 40.0% |
| !! | GCTTTTTCTCTCCAGCTTTT+AGG | + | chr1.1:65579622-65579641 | MS.gene21544:CDS | 40.0% |
| !! | GGTATGCTCTTTTAGCCTTT+TGG | + | chr1.1:65578817-65578836 | MS.gene21544:intron | 40.0% |
| !! | GTTGTTTTGTTCTTTCCCTC+TGG | + | chr1.1:65578577-65578596 | MS.gene21544:intron | 40.0% |
| !! | GTTTTGAATGGGATTACAGG+TGG | + | chr1.1:65579502-65579521 | MS.gene21544:CDS | 40.0% |
| !! | TACTAGATGGCTTTGATCAG+GGG | - | chr1.1:65577351-65577370 | None:intergenic | 40.0% |
| !!! | GATGGTTCACTTTTTGTTGC+TGG | + | chr1.1:65577149-65577168 | MS.gene21544:CDS | 40.0% |
| !!! | GGAGTTTTGAATGGGATTAC+AGG | + | chr1.1:65579499-65579518 | MS.gene21544:CDS | 40.0% |
| AAGCTGGAGAGAAAAAGCAG+CGG | - | chr1.1:65579620-65579639 | None:intergenic | 45.0% | |
| AATATGCAGGAGATCCACGA+TGG | + | chr1.1:65577725-65577744 | MS.gene21544:intron | 45.0% | |
| ACCCATCAGTCACAGACTTA+TGG | - | chr1.1:65579081-65579100 | None:intergenic | 45.0% | |
| AGGCCAGGAATCAAAGTTCA+AGG | - | chr1.1:65580270-65580289 | None:intergenic | 45.0% | |
| ATAGGCCAAGGACCATTTAC+AGG | - | chr1.1:65577086-65577105 | None:intergenic | 45.0% | |
| ATATGCAGGAGATCCACGAT+GGG | + | chr1.1:65577726-65577745 | MS.gene21544:intron | 45.0% | |
| CAAAAGATGACAGCGATCAG+CGG | - | chr1.1:65577051-65577070 | None:intergenic | 45.0% | |
| CAAGAAGAGCTAACGAGCAT+AGG | - | chr1.1:65580530-65580549 | None:intergenic | 45.0% | |
| CGAATCCAATTGTTCAGGAC+GGG | + | chr1.1:65577013-65577032 | MS.gene21544:CDS | 45.0% | |
| GAATCCAATTGTTCAGGACG+GGG | + | chr1.1:65577014-65577033 | MS.gene21544:CDS | 45.0% | |
| GCGAATCCAATTGTTCAGGA+CGG | + | chr1.1:65577012-65577031 | MS.gene21544:CDS | 45.0% | |
| GTAACCGTGTTCGTGGATAT+AGG | + | chr1.1:65579478-65579497 | MS.gene21544:intron | 45.0% | |
| GTCCTGAACAATTGGATTCG+CGG | - | chr1.1:65577013-65577032 | None:intergenic | 45.0% | |
| TCATCCTTGTGATCAGTCAG+TGG | + | chr1.1:65579557-65579576 | MS.gene21544:CDS | 45.0% | |
| TGAAATAGCGTCCATCTCCA+CGG | - | chr1.1:65578731-65578750 | None:intergenic | 45.0% | |
| TGAATGGGATTACAGGTGGA+TGG | + | chr1.1:65579506-65579525 | MS.gene21544:CDS | 45.0% | |
| ! | AAGTCTGTGACTGATGGGTA+TGG | + | chr1.1:65579082-65579101 | MS.gene21544:intron | 45.0% |
| ! | ACTTTTTGTTGCTGGGTTCC+AGG | + | chr1.1:65577157-65577176 | MS.gene21544:CDS | 45.0% |
| ! | CAAGAGTGCGTAAGACTGAA+TGG | - | chr1.1:65579596-65579615 | None:intergenic | 45.0% |
| ! | CTATGCTCGTTAGCTCTTCT+TGG | + | chr1.1:65580528-65580547 | MS.gene21544:CDS | 45.0% |
| ! | GACGATGGAGGATACTCTTT+TGG | + | chr1.1:65577767-65577786 | MS.gene21544:CDS | 45.0% |
| ! | GTGTCTCAGTTTTCAGCTGA+TGG | + | chr1.1:65577131-65577150 | MS.gene21544:CDS | 45.0% |
| ! | TCAAGTCTTTTGCTTGTGGC+GGG | - | chr1.1:65579536-65579555 | None:intergenic | 45.0% |
| !! | GCTTCGAATTTTAGCGCACA+CGG | + | chr1.1:65577889-65577908 | MS.gene21544:CDS | 45.0% |
| !! | GTTTTGATGGGACACCTTGA+GGG | + | chr1.1:65578687-65578706 | MS.gene21544:CDS | 45.0% |
| !! | TAGTACATGATGGGTCTGGA+AGG | + | chr1.1:65576949-65576968 | MS.gene21544:CDS | 45.0% |
| !!! | TAATTTATTTATCATTTTTA+TGG | + | chr1.1:65578129-65578148 | MS.gene21544:intron | 5.0% |
| AAGAGCTAACGAGCATAGGG+TGG | - | chr1.1:65580526-65580545 | None:intergenic | 50.0% | |
| AATGCTAAAGACAAGCCGGC+AGG | + | chr1.1:65578663-65578682 | MS.gene21544:CDS | 50.0% | |
| ATGCTAAAGACAAGCCGGCA+GGG | + | chr1.1:65578664-65578683 | MS.gene21544:CDS | 50.0% | |
| CAGTCAGTGGCTACGTATAG+AGG | + | chr1.1:65579570-65579589 | MS.gene21544:CDS | 50.0% | |
| CGACTAGGCATTTGGTCGAT+AGG | - | chr1.1:65577104-65577123 | None:intergenic | 50.0% | |
| CGTATGCTCGACTAGGCATT+TGG | - | chr1.1:65577112-65577131 | None:intergenic | 50.0% | |
| CTAACGAGCATAGGGTGGAA+AGG | - | chr1.1:65580521-65580540 | None:intergenic | 50.0% | |
| GAAAGAGTTGCCTGTTTCCC+CGG | + | chr1.1:65576971-65576990 | MS.gene21544:CDS | 50.0% | |
| GAAATAGCGTCCATCTCCAC+GGG | - | chr1.1:65578730-65578749 | None:intergenic | 50.0% | |
| GATGGGAGGGAATTAGTTGC+AGG | + | chr1.1:65577815-65577834 | MS.gene21544:CDS | 50.0% | |
| GTGTACGATAGGTGACATGC+TGG | - | chr1.1:65577480-65577499 | None:intergenic | 50.0% | |
| GTTCTTTCCCTCTGGACTTC+AGG | + | chr1.1:65578585-65578604 | MS.gene21544:intron | 50.0% | |
| GTTGTGTCAGCTTGTCTGTC+TGG | + | chr1.1:65579339-65579358 | MS.gene21544:intron | 50.0% | |
| TACCCTCTTCTTAACCGACG+AGG | - | chr1.1:65580603-65580622 | None:intergenic | 50.0% | |
| TATAACTAGGGGGAAGAGGG+AGG | + | chr1.1:65579947-65579966 | MS.gene21544:intron | 50.0% | |
| TCCCTAACCTGAAGTCCAGA+GGG | - | chr1.1:65578595-65578614 | None:intergenic | 50.0% | |
| TGAGACACGTATGCTCGACT+AGG | - | chr1.1:65577119-65577138 | None:intergenic | 50.0% | |
| ! | AGCCTCGTCGGTTAAGAAGA+GGG | + | chr1.1:65580598-65580617 | MS.gene21544:CDS | 50.0% |
| ! | ATCTGCTGGGAGCTCTGATA+TGG | + | chr1.1:65580574-65580593 | MS.gene21544:CDS | 50.0% |
| ! | CTCGTTAGCTCTTCTTGGGA+TGG | + | chr1.1:65580533-65580552 | MS.gene21544:CDS | 50.0% |
| ! | GCTAGAGCACTTCTGCTGAT+GGG | + | chr1.1:65578903-65578922 | MS.gene21544:intron | 50.0% |
| ! | GTAGCCACTGACTGATCACA+AGG | - | chr1.1:65579564-65579583 | None:intergenic | 50.0% |
| ! | TCCCTCTGGACTTCAGGTTA+GGG | + | chr1.1:65578591-65578610 | MS.gene21544:intron | 50.0% |
| ! | TGCTAGAGCACTTCTGCTGA+TGG | + | chr1.1:65578902-65578921 | MS.gene21544:intron | 50.0% |
| ! | TTCCCTCTGGACTTCAGGTT+AGG | + | chr1.1:65578590-65578609 | MS.gene21544:intron | 50.0% |
| !! | CTGCTAGTACATGATGGGTC+TGG | + | chr1.1:65576945-65576964 | MS.gene21544:CDS | 50.0% |
| !! | GGTTTTGATGGGACACCTTG+AGG | + | chr1.1:65578686-65578705 | MS.gene21544:CDS | 50.0% |
| AGCATCTTCACCGGGGAAAC+AGG | - | chr1.1:65576984-65577003 | None:intergenic | 55.0% | |
| CCAATTGTTCAGGACGGGGA+AGG | + | chr1.1:65577018-65577037 | MS.gene21544:CDS | 55.0% | |
| CCTTCCCCGTCCTGAACAAT+TGG | - | chr1.1:65577021-65577040 | None:intergenic | 55.0% | |
| CTCTGATATGGCAGCCTCGT+CGG | + | chr1.1:65580586-65580605 | MS.gene21544:CDS | 55.0% | |
| GGCATTTGGTCGATAGGCCA+AGG | - | chr1.1:65577098-65577117 | None:intergenic | 55.0% | |
| GGCCGCGAATCCAATTGTTC+AGG | + | chr1.1:65577008-65577027 | MS.gene21544:CDS | 55.0% | |
| GTCCCTAACCTGAAGTCCAG+AGG | - | chr1.1:65578596-65578615 | None:intergenic | 55.0% | |
| TGCTAAAGACAAGCCGGCAG+GGG | + | chr1.1:65578665-65578684 | MS.gene21544:CDS | 55.0% | |
| TGTCCCATCAAAACCCCTGC+CGG | - | chr1.1:65578681-65578700 | None:intergenic | 55.0% | |
| TGTTTCCCCGGTGAAGATGC+TGG | + | chr1.1:65576983-65577002 | MS.gene21544:CDS | 55.0% | |
| TTCGGTTATGAACAGCGGCG+AGG | - | chr1.1:65580290-65580309 | None:intergenic | 55.0% | |
| ! | ATGGTGCAGTTTGAAGCGGG+TGG | + | chr1.1:65577985-65578004 | MS.gene21544:intron | 55.0% |
| ! | CAGCCTCGTCGGTTAAGAAG+AGG | + | chr1.1:65580597-65580616 | MS.gene21544:CDS | 55.0% |
| !! | AAGCCGGCAGGGGTTTTGAT+GGG | + | chr1.1:65578675-65578694 | MS.gene21544:CDS | 55.0% |
| CTAGGGGGAAGAGGGAGGAT+AGG | + | chr1.1:65579952-65579971 | MS.gene21544:intron | 60.0% | |
| GCAGGAGATCCACGATGGGT+TGG | + | chr1.1:65577730-65577749 | MS.gene21544:intron | 60.0% | |
| TTATGAACAGCGGCGAGGCC+AGG | - | chr1.1:65580285-65580304 | None:intergenic | 60.0% | |
| !! | CAAGCCGGCAGGGGTTTTGA+TGG | + | chr1.1:65578674-65578693 | MS.gene21544:CDS | 60.0% |
| CGGCCTGCCAGCATCTTCAC+CGG | - | chr1.1:65576993-65577012 | None:intergenic | 65.0% | |
| GCCTGCCAGCATCTTCACCG+GGG | - | chr1.1:65576991-65577010 | None:intergenic | 65.0% | |
| GGCCTGCCAGCATCTTCACC+GGG | - | chr1.1:65576992-65577011 | None:intergenic | 65.0% | |
| TCCCCGGTGAAGATGCTGGC+AGG | + | chr1.1:65576987-65577006 | MS.gene21544:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 65576750 | 65580655 | 65576750 | ID=MS.gene21544 |
| chr1.1 | mRNA | 65576750 | 65580655 | 65576750 | ID=MS.gene21544.t1;Parent=MS.gene21544 |
| chr1.1 | exon | 65576750 | 65577178 | 65576750 | ID=MS.gene21544.t1.exon1;Parent=MS.gene21544.t1 |
| chr1.1 | CDS | 65576750 | 65577178 | 65576750 | ID=cds.MS.gene21544.t1;Parent=MS.gene21544.t1 |
| chr1.1 | exon | 65577248 | 65577367 | 65577248 | ID=MS.gene21544.t1.exon2;Parent=MS.gene21544.t1 |
| chr1.1 | CDS | 65577248 | 65577367 | 65577248 | ID=cds.MS.gene21544.t1;Parent=MS.gene21544.t1 |
| chr1.1 | exon | 65577470 | 65577547 | 65577470 | ID=MS.gene21544.t1.exon3;Parent=MS.gene21544.t1 |
| chr1.1 | CDS | 65577470 | 65577547 | 65577470 | ID=cds.MS.gene21544.t1;Parent=MS.gene21544.t1 |
| chr1.1 | exon | 65577734 | 65577910 | 65577734 | ID=MS.gene21544.t1.exon4;Parent=MS.gene21544.t1 |
| chr1.1 | CDS | 65577734 | 65577910 | 65577734 | ID=cds.MS.gene21544.t1;Parent=MS.gene21544.t1 |
| chr1.1 | exon | 65578247 | 65578324 | 65578247 | ID=MS.gene21544.t1.exon5;Parent=MS.gene21544.t1 |
| chr1.1 | CDS | 65578247 | 65578324 | 65578247 | ID=cds.MS.gene21544.t1;Parent=MS.gene21544.t1 |
| chr1.1 | exon | 65578642 | 65578817 | 65578642 | ID=MS.gene21544.t1.exon6;Parent=MS.gene21544.t1 |
| chr1.1 | CDS | 65578642 | 65578817 | 65578642 | ID=cds.MS.gene21544.t1;Parent=MS.gene21544.t1 |
| chr1.1 | exon | 65579479 | 65579643 | 65579479 | ID=MS.gene21544.t1.exon7;Parent=MS.gene21544.t1 |
| chr1.1 | CDS | 65579479 | 65579643 | 65579479 | ID=cds.MS.gene21544.t1;Parent=MS.gene21544.t1 |
| chr1.1 | exon | 65579813 | 65579873 | 65579813 | ID=MS.gene21544.t1.exon8;Parent=MS.gene21544.t1 |
| chr1.1 | CDS | 65579813 | 65579873 | 65579813 | ID=cds.MS.gene21544.t1;Parent=MS.gene21544.t1 |
| chr1.1 | exon | 65580452 | 65580655 | 65580452 | ID=MS.gene21544.t1.exon9;Parent=MS.gene21544.t1 |
| chr1.1 | CDS | 65580452 | 65580655 | 65580452 | ID=cds.MS.gene21544.t1;Parent=MS.gene21544.t1 |
| Gene Sequence |
| Protein sequence |
