AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene21584

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21584.t1 MTR_1g090150 96.460 226 8 0 1 226 1 226 1.64e-165 455
MS.gene21584.t1 MTR_1g115195 49.321 221 108 2 1 218 1 220 4.38e-75 226
MS.gene21584.t1 MTR_4g019780 46.226 212 111 2 1 211 6 215 3.30e-68 209
MS.gene21584.t1 MTR_1g090060 50.472 212 102 2 1 210 1 211 4.13e-68 209
MS.gene21584.t1 MTR_4g059730 48.341 211 108 1 2 211 3 213 9.63e-68 207
MS.gene21584.t1 MTR_7g065590 47.964 221 110 3 1 219 5 222 5.84e-67 206
MS.gene21584.t1 MTR_7g065600 46.818 220 112 2 2 219 6 222 1.91e-66 204
MS.gene21584.t1 MTR_8g087425 48.636 220 110 2 2 220 4 221 2.54e-66 204
MS.gene21584.t1 MTR_4g019790 46.606 221 113 3 3 221 7 224 5.68e-66 203
MS.gene21584.t1 MTR_3g099757 47.032 219 113 2 2 219 4 220 2.56e-65 202
MS.gene21584.t1 MTR_7g065290 49.065 214 104 3 2 213 6 216 3.87e-65 201
MS.gene21584.t1 MTR_7g065720 45.622 217 104 4 2 211 6 215 1.89e-64 199
MS.gene21584.t1 MTR_1g090070 46.948 213 111 1 1 211 7 219 3.28e-64 199
MS.gene21584.t1 MTR_7g065270 48.131 214 106 3 2 213 6 216 3.57e-64 199
MS.gene21584.t1 MTR_1g090100 49.524 210 103 2 4 211 3 211 9.75e-64 197
MS.gene21584.t1 MTR_6g080440 46.919 211 109 2 1 210 1 209 3.22e-63 196
MS.gene21584.t1 MTR_7g065230 47.664 214 102 4 2 213 6 211 3.11e-62 194
MS.gene21584.t1 MTR_7g065660 44.395 223 119 3 1 221 5 224 8.42e-61 190
MS.gene21584.t1 MTR_7g065740 42.411 224 123 3 1 221 5 225 1.13e-60 190
MS.gene21584.t1 MTR_7g065265 47.196 214 108 3 2 213 6 216 1.97e-60 189
MS.gene21584.t1 MTR_7g065750 44.444 216 114 4 1 213 5 217 2.03e-60 189
MS.gene21584.t1 MTR_8g087410 45.161 217 116 2 2 217 5 219 5.65e-60 188
MS.gene21584.t1 MTR_1g090090 46.445 211 110 3 1 209 1 210 1.69e-59 187
MS.gene21584.t1 MTR_7g065640 42.601 223 105 4 1 221 5 206 9.67e-58 182
MS.gene21584.t1 MTR_7g065630 43.243 222 117 4 2 221 24 238 2.53e-56 179
MS.gene21584.t1 MTR_7g065260 46.154 221 113 4 2 219 13 230 1.55e-55 177
MS.gene21584.t1 MTR_7g065710 45.714 210 105 4 4 211 5 207 6.42e-55 175
MS.gene21584.t1 MTR_5g040430 40.187 214 123 4 3 211 7 220 1.90e-50 164
MS.gene21584.t1 MTR_7g065680 43.182 220 116 4 2 219 6 218 1.20e-49 162
MS.gene21584.t1 MTR_7g065700 42.453 212 113 4 2 211 6 210 1.46e-46 154
MS.gene21584.t1 MTR_5g037380 40.741 216 117 4 3 209 5 218 5.72e-46 152
MS.gene21584.t1 MTR_2g070130 38.009 221 119 7 2 212 3 215 8.47e-45 149
MS.gene21584.t1 MTR_2g070120 37.209 215 129 4 2 214 3 213 8.75e-45 149
MS.gene21584.t1 MTR_8g061950 38.961 231 130 5 3 224 5 233 9.91e-45 149
MS.gene21584.t1 MTR_2g070150 38.756 209 114 6 2 204 3 203 3.17e-44 147
MS.gene21584.t1 MTR_2g070180 38.426 216 123 5 2 211 3 214 2.67e-42 142
MS.gene21584.t1 MTR_2g070210 35.909 220 133 5 2 217 3 218 3.08e-42 142
MS.gene21584.t1 MTR_2g070140 38.647 207 113 6 17 217 2 200 1.04e-41 140
MS.gene21584.t1 MTR_3g467420 40.000 210 111 7 3 205 9 210 1.55e-41 141
MS.gene21584.t1 MTR_2g070200 37.379 206 122 5 2 204 3 204 1.17e-40 139
MS.gene21584.t1 MTR_3g467430 40.094 212 110 8 2 205 8 210 1.43e-39 136
MS.gene21584.t1 MTR_4g124130 39.819 221 121 8 1 215 1 215 4.91e-38 132
MS.gene21584.t1 MTR_2g070060 36.842 209 126 4 3 209 4 208 8.45e-38 131
MS.gene21584.t1 MTR_8g056940 36.493 211 126 5 10 217 11 216 3.07e-37 130
MS.gene21584.t1 MTR_5g076900 37.156 218 129 6 2 216 5 217 8.60e-37 129
MS.gene21584.t1 MTR_2g070070 37.900 219 122 6 3 215 4 214 2.48e-34 122
MS.gene21584.t1 MTR_2g070110 36.652 221 123 5 3 216 4 214 5.16e-33 119
MS.gene21584.t1 MTR_0186s0030 42.963 135 73 3 2 133 3 136 1.15e-31 113
MS.gene21584.t1 MTR_2g072120 46.552 58 30 1 47 103 2 59 1.85e-13 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21584.t1 AT2G29420 47.887 213 108 2 2 213 8 218 1.18e-66 205
MS.gene21584.t1 AT3G09270 48.357 213 105 4 2 211 5 215 4.93e-63 196
MS.gene21584.t1 AT2G29490 46.890 209 107 3 2 208 6 212 4.20e-58 183
MS.gene21584.t1 AT2G29460 45.540 213 112 3 2 212 6 216 1.40e-56 179
MS.gene21584.t1 AT2G29450 45.872 218 110 4 2 213 5 220 2.70e-56 179
MS.gene21584.t1 AT2G29480 45.540 213 112 3 2 212 6 216 4.89e-56 178
MS.gene21584.t1 AT2G29440 44.550 211 113 3 2 210 5 213 1.06e-52 169
MS.gene21584.t1 AT2G29470 42.925 212 116 4 2 210 6 215 5.06e-52 168
MS.gene21584.t1 AT5G62480 38.158 228 125 5 4 219 9 232 7.46e-51 165
MS.gene21584.t1 AT1G78320 37.104 221 133 4 2 220 3 219 7.35e-47 154
MS.gene21584.t1 AT1G74590 38.222 225 125 5 8 223 12 231 9.70e-47 154
MS.gene21584.t1 AT1G27130 38.288 222 130 4 2 216 5 226 2.76e-46 153
MS.gene21584.t1 AT1G78370 39.904 208 119 4 10 215 11 214 5.38e-46 152
MS.gene21584.t1 AT1G78380 40.367 218 124 4 3 218 4 217 2.04e-45 150
MS.gene21584.t1 AT1G17170 39.815 216 123 5 2 215 3 213 5.36e-45 150
MS.gene21584.t1 AT1G10370 40.278 216 123 3 3 212 5 220 7.87e-45 149
MS.gene21584.t1 AT1G78340 36.986 219 132 4 2 218 3 217 1.01e-42 144
MS.gene21584.t1 AT1G17180 37.037 216 130 4 2 215 3 214 1.98e-41 140
MS.gene21584.t1 AT3G43800 39.806 206 114 6 2 201 4 205 4.22e-40 137
MS.gene21584.t1 AT1G59670 39.450 218 125 5 2 212 5 222 6.28e-40 137
MS.gene21584.t1 AT1G59700 38.636 220 124 5 2 212 5 222 1.00e-39 137
MS.gene21584.t1 AT1G27140 35.909 220 133 4 2 213 5 224 4.71e-39 135
MS.gene21584.t1 AT1G69930 36.279 215 132 3 2 211 11 225 4.98e-39 135
MS.gene21584.t1 AT1G69920 36.364 220 133 4 4 216 35 254 5.51e-38 133
MS.gene21584.t1 AT1G53680 36.239 218 131 4 4 217 8 221 6.04e-38 132
MS.gene21584.t1 AT1G17190 37.727 220 131 4 2 219 4 219 1.56e-37 130
MS.gene21584.t1 AT1G10360 36.036 222 133 6 2 217 4 222 9.78e-37 129
MS.gene21584.t1 AT1G78360 36.199 221 128 6 3 217 4 217 1.73e-35 125
MS.gene21584.t1 AT5G62480 31.390 223 113 5 8 219 13 206 9.28e-34 120
MS.gene21584.t1 AT5G62480 31.390 223 112 5 8 219 13 205 2.25e-33 119
MS.gene21584.t1 AT1G78320 30.455 220 122 4 2 220 3 192 8.94e-30 110
MS.gene21584.t1 AT2G02390 27.103 214 132 5 2 201 7 210 1.79e-12 64.7
MS.gene21584.t1 AT2G02380 27.619 210 132 8 4 201 12 213 4.35e-12 63.5
MS.gene21584.t1 AT2G02390 25.792 221 133 5 2 201 7 217 7.69e-12 63.2

Find 53 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACACAACCCTCTGAGTAAA+TGG 0.229034 1.3:-63038783 None:intergenic
AGAGGTCCAATGTTCGTTTC+TGG 0.238880 1.3:+63039012 MS.gene21584:CDS
CATTTCCCCACCTTCACTCT+TGG 0.265735 1.3:+63040105 MS.gene21584:CDS
GTTCCTGTTCTTGTACATAA+TGG 0.304049 1.3:+63038903 MS.gene21584:CDS
CTCTTGGGTCAAGAATTTCT+TGG 0.313611 1.3:+63040121 MS.gene21584:CDS
ACAGGAACCTTCTTGTAGAT+TGG 0.343683 1.3:-63038888 None:intergenic
TTCATTGGTGGCAACACAAT+TGG 0.349905 1.3:+63039996 MS.gene21584:CDS
ATTTCCCCACCTTCACTCTT+GGG 0.369745 1.3:+63040106 MS.gene21584:CDS
GTCAAAATTCATCGAGGAAA+AGG 0.403539 1.3:+63039034 MS.gene21584:CDS
TTTCCATTATGTACAAGAAC+AGG 0.410891 1.3:-63038906 None:intergenic
GAGATCAATAAAAGAAACTT+TGG 0.416167 1.3:+63039926 MS.gene21584:CDS
GTGTGGACATTAAAACTAAA+GGG 0.449247 1.3:+63038801 MS.gene21584:CDS
TAAGCATCTTGTGGCAATAG+AGG 0.455670 1.3:-63038987 None:intergenic
GCTACTTGTCGAGTACTTCA+AGG 0.459707 1.3:+63040181 MS.gene21584:CDS
GGATTGGCAGACATAGCCTT+AGG 0.466349 1.3:+63040017 MS.gene21584:CDS
ATCACCATTGACTCTGCCAT+TGG 0.471524 1.3:-63038930 None:intergenic
CCAGTCATGGAAGAAATTGT+TGG 0.492761 1.3:+63040059 MS.gene21584:CDS
TGTGTGGACATTAAAACTAA+AGG 0.495150 1.3:+63038800 MS.gene21584:CDS
TGGCAGACATAGCCTTAGGT+TGG 0.497374 1.3:+63040021 MS.gene21584:CDS
AACTTTGAGAGTGATTGAAA+AGG 0.504867 1.3:+63039950 MS.gene21584:CDS
AAAACCAATGGCAGAGTCAA+TGG 0.512501 1.3:+63038926 MS.gene21584:CDS
AGAGTGATTGAAAAGGAAAG+TGG 0.513776 1.3:+63039957 MS.gene21584:CDS
GTCAAGTCCATTTACTCAGA+GGG 0.514134 1.3:+63038776 MS.gene21584:CDS
CTTAGTGAAAAGATGTTCAT+TGG 0.515605 1.3:+63039981 MS.gene21584:CDS
CCAACAATTTCTTCCATGAC+TGG 0.525633 1.3:-63040059 None:intergenic
TGGTGGCAACACAATTGGAT+TGG 0.546011 1.3:+63040001 MS.gene21584:CDS
TGCACATACTCTGCCAGTCA+TGG 0.554228 1.3:+63040046 MS.gene21584:CDS
GTACTCGACAAGTAGCTCAT+GGG 0.563068 1.3:-63040174 None:intergenic
TCTTGACCCAAGAGTGAAGG+TGG 0.567830 1.3:-63040112 None:intergenic
CATTTACTCAGAGGGTTGTG+TGG 0.569240 1.3:+63038784 MS.gene21584:CDS
AGTGAAAAGATGTTCATTGG+TGG 0.577298 1.3:+63039984 MS.gene21584:CDS
AGTACTCGACAAGTAGCTCA+TGG 0.579552 1.3:-63040175 None:intergenic
ATAAACCATGGAGGATGTCA+AGG 0.583420 1.3:+63038740 None:intergenic
TTGAATATATTGATGAGACT+TGG 0.584030 1.3:+63038955 MS.gene21584:CDS
AAGCATCTTGTGGCAATAGA+GGG 0.589426 1.3:-63038986 None:intergenic
AGTATGTGCAATCCAACCTA+AGG 0.590838 1.3:-63040033 None:intergenic
GAGTGATTGAAAAGGAAAGT+GGG 0.591381 1.3:+63039958 MS.gene21584:CDS
GACCTCTCATAAGCATCTTG+TGG 0.597852 1.3:-63038996 None:intergenic
TGTACATAATGGAAAACCAA+TGG 0.599116 1.3:+63038914 MS.gene21584:CDS
ATACAATCCAATCTACAAGA+AGG 0.599962 1.3:+63038881 MS.gene21584:CDS
AATTCTTGACCCAAGAGTGA+AGG 0.605291 1.3:-63040115 None:intergenic
TTGTCGAGTACTTCAAGGAA+AGG 0.619516 1.3:+63040186 MS.gene21584:CDS
CTTGACCCAAGAGTGAAGGT+GGG 0.630426 1.3:-63040111 None:intergenic
GGTCAAGTCCATTTACTCAG+AGG 0.633849 1.3:+63038775 MS.gene21584:CDS
GGTGTGAGTTATGAGTATTA+TGG 0.634625 1.3:+63038822 MS.gene21584:CDS
GTACTTCAAGGAAAGGAGGA+AGG 0.639820 1.3:+63040193 MS.gene21584:CDS
TACTCGACAAGTAGCTCATG+GGG 0.641224 1.3:-63040173 None:intergenic
TCGAGTACTTCAAGGAAAGG+AGG 0.649520 1.3:+63040189 MS.gene21584:CDS
TGTGGCAATAGAGGGATCTG+AGG 0.656588 1.3:-63038978 None:intergenic
TCGACAAGTAGCTCATGGGG+TGG 0.666333 1.3:-63040170 None:intergenic
TGCCACAAGATGCTTATGAG+AGG 0.667321 1.3:+63038994 MS.gene21584:CDS
TTGACCCAAGAGTGAAGGTG+GGG 0.669984 1.3:-63040110 None:intergenic
TTTCTGGTCAAAATTCATCG+AGG 0.698544 1.3:+63039028 MS.gene21584:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAATAGGAATTATAAT+AGG - chr1.3:63039587-63039606 None:intergenic 10.0%
!! ATAAAAGAAAAATAAAGAAT+AGG - chr1.3:63039352-63039371 None:intergenic 10.0%
!!! AATCGTATAAAATATTTTTT+TGG - chr1.3:63039317-63039336 None:intergenic 10.0%
!!! ATATTTTTTCTCTATATTTA+GGG - chr1.3:63039738-63039757 None:intergenic 10.0%
!!! TATATTTTTTCTCTATATTT+AGG - chr1.3:63039739-63039758 None:intergenic 10.0%
!!! TATTATAATTCCTATTTTTA+TGG + chr1.3:63039586-63039605 MS.gene21584:intron 10.0%
!! ATTTAAATTTGATTATGGAA+AGG - chr1.3:63039097-63039116 None:intergenic 15.0%
!! GTTAACTTTATAATATTCTT+AGG - chr1.3:63039614-63039633 None:intergenic 15.0%
!! TTTAAATTTGATTATGGAAA+GGG - chr1.3:63039096-63039115 None:intergenic 15.0%
!!! TTGTCATTTAAATTTGATTA+TGG - chr1.3:63039102-63039121 None:intergenic 15.0%
!! GATACAAAGATCTATTTAAA+AGG - chr1.3:63039248-63039267 None:intergenic 20.0%
!! GTATTTAGGAAAAATATGTT+TGG - chr1.3:63039636-63039655 None:intergenic 20.0%
!! TGATATTTAACCAGTAAATA+TGG + chr1.3:63039197-63039216 MS.gene21584:intron 20.0%
!!! AAGTTATATTTATTGATTCC+CGG + chr1.3:63039405-63039424 MS.gene21584:intron 20.0%
!!! AATTTTATTCCAAGGTATTT+AGG - chr1.3:63039650-63039669 None:intergenic 20.0%
!!! AGTTTACTAAATTTTATTCC+CGG + chr1.3:63039468-63039487 MS.gene21584:intron 20.0%
! AAATGTTCTTCCATATTTAC+TGG - chr1.3:63039210-63039229 None:intergenic 25.0%
! AATCATTACAATGTCATTGT+AGG - chr1.3:63039848-63039867 None:intergenic 25.0%
! AGTAAACTTGTAACAAACAT+AGG - chr1.3:63039456-63039475 None:intergenic 25.0%
! AGTTGATCAAATTTATTCCT+AGG - chr1.3:63039702-63039721 None:intergenic 25.0%
! ATTCCTTGGAATATAAAGAT+GGG - chr1.3:63039673-63039692 None:intergenic 25.0%
! GAGATCAATAAAAGAAACTT+TGG + chr1.3:63039926-63039945 MS.gene21584:CDS 25.0%
! TACGTTAACATTTGATATGT+TGG - chr1.3:63039783-63039802 None:intergenic 25.0%
! TCTCATAAGTATTACTTTGA+TGG - chr1.3:63039814-63039833 None:intergenic 25.0%
! TTCTTAGGAACCATAAAAAT+AGG - chr1.3:63039599-63039618 None:intergenic 25.0%
! TTGAATATATTGATGAGACT+TGG + chr1.3:63038955-63038974 MS.gene21584:CDS 25.0%
!! AAAAATTTTCCCAAGGAAAA+GGG + chr1.3:63039514-63039533 MS.gene21584:intron 25.0%
!! CATATTTTTCCTAAATACCT+TGG + chr1.3:63039638-63039657 MS.gene21584:intron 25.0%
!! GTTTACTAAATTTTATTCCC+GGG + chr1.3:63039469-63039488 MS.gene21584:intron 25.0%
!! TATTCCTATCATTTTATTCC+CGG - chr1.3:63039427-63039446 None:intergenic 25.0%
!! TTACTGGTTAAATATCAAGT+TGG - chr1.3:63039194-63039213 None:intergenic 25.0%
!!! AGTTATATTTATTGATTCCC+GGG + chr1.3:63039406-63039425 MS.gene21584:intron 25.0%
ATACAATCCAATCTACAAGA+AGG + chr1.3:63038881-63038900 MS.gene21584:CDS 30.0%
ATTCCCATCTTTATATTCCA+AGG + chr1.3:63039667-63039686 MS.gene21584:intron 30.0%
CATTCCTTGGAATATAAAGA+TGG - chr1.3:63039674-63039693 None:intergenic 30.0%
CTTAGTGAAAAGATGTTCAT+TGG + chr1.3:63039981-63040000 MS.gene21584:CDS 30.0%
GAATTTATTCTCATCTCCAT+GGG - chr1.3:63039553-63039572 None:intergenic 30.0%
GTGTGGACATTAAAACTAAA+GGG + chr1.3:63038801-63038820 MS.gene21584:CDS 30.0%
TGAATTTATTCTCATCTCCA+TGG - chr1.3:63039554-63039573 None:intergenic 30.0%
TGTGTGGACATTAAAACTAA+AGG + chr1.3:63038800-63038819 MS.gene21584:CDS 30.0%
TTTCCATTATGTACAAGAAC+AGG - chr1.3:63038909-63038928 None:intergenic 30.0%
! AACTTTGAGAGTGATTGAAA+AGG + chr1.3:63039950-63039969 MS.gene21584:CDS 30.0%
! AAGATGGGAATTTTATTCCA+AGG - chr1.3:63039658-63039677 None:intergenic 30.0%
! ATTCCTATCATTTTATTCCC+GGG - chr1.3:63039426-63039445 None:intergenic 30.0%
! GAAAAATTTTCCCAAGGAAA+AGG + chr1.3:63039513-63039532 MS.gene21584:intron 30.0%
! GGAATAGAAAAATTTTCCCA+AGG + chr1.3:63039507-63039526 MS.gene21584:intron 30.0%
! TGTACATAATGGAAAACCAA+TGG + chr1.3:63038914-63038933 MS.gene21584:CDS 30.0%
!!! ATGGAATTTTTTCTGTACGA+TGG + chr1.3:63039891-63039910 MS.gene21584:CDS 30.0%
!!! GGAAGATTGTTTTTTATAGC+AGG - chr1.3:63040152-63040171 None:intergenic 30.0%
AGAGTGATTGAAAAGGAAAG+TGG + chr1.3:63039957-63039976 MS.gene21584:CDS 35.0%
AGTGAAAAGATGTTCATTGG+TGG + chr1.3:63039984-63040003 MS.gene21584:CDS 35.0%
ATGAAACTCACACACACTAA+GGG + chr1.3:63039370-63039389 MS.gene21584:intron 35.0%
ATTCCCGGGAATAAAATGAT+AGG + chr1.3:63039420-63039439 MS.gene21584:intron 35.0%
GAGTGATTGAAAAGGAAAGT+GGG + chr1.3:63039958-63039977 MS.gene21584:CDS 35.0%
GGTCAAATATACCCTTCAAT+CGG - chr1.3:63039296-63039315 None:intergenic 35.0%
GGTGTGAGTTATGAGTATTA+TGG + chr1.3:63038822-63038841 MS.gene21584:CDS 35.0%
GTCAAAATTCATCGAGGAAA+AGG + chr1.3:63039034-63039053 MS.gene21584:CDS 35.0%
GTTCCTGTTCTTGTACATAA+TGG + chr1.3:63038903-63038922 MS.gene21584:CDS 35.0%
TATGAAACTCACACACACTA+AGG + chr1.3:63039369-63039388 MS.gene21584:intron 35.0%
TCAATTGTGTCACATTACGT+CGG - chr1.3:63039141-63039160 None:intergenic 35.0%
TTCCAAGGAATGTTATTCCT+AGG + chr1.3:63039682-63039701 MS.gene21584:intron 35.0%
TTCCTAGGAATAACATTCCT+TGG - chr1.3:63039687-63039706 None:intergenic 35.0%
! GGGAAAATTTTTCTATTCCC+AGG - chr1.3:63039506-63039525 None:intergenic 35.0%
! TTTCTGGTCAAAATTCATCG+AGG + chr1.3:63039028-63039047 MS.gene21584:CDS 35.0%
! TTTTCAGTCAATGCACATGA+TGG + chr1.3:63039872-63039891 MS.gene21584:intron 35.0%
! TTTTGACCAGAAACGAACAT+TGG - chr1.3:63039021-63039040 None:intergenic 35.0%
!!! ATGTCAAGGTTTTTGGTCTA+TGG + chr1.3:63038754-63038773 MS.gene21584:CDS 35.0%
AAAACCAATGGCAGAGTCAA+TGG + chr1.3:63038926-63038945 MS.gene21584:CDS 40.0%
AAGCATCTTGTGGCAATAGA+GGG - chr1.3:63038989-63039008 None:intergenic 40.0%
AATTCTTGACCCAAGAGTGA+AGG - chr1.3:63040118-63040137 None:intergenic 40.0%
ACAGGAACCTTCTTGTAGAT+TGG - chr1.3:63038891-63038910 None:intergenic 40.0%
AGTATGTGCAATCCAACCTA+AGG - chr1.3:63040036-63040055 None:intergenic 40.0%
CCAACAATTTCTTCCATGAC+TGG - chr1.3:63040062-63040081 None:intergenic 40.0%
CCAGTCATGGAAGAAATTGT+TGG + chr1.3:63040059-63040078 MS.gene21584:CDS 40.0%
CTCTTGGGTCAAGAATTTCT+TGG + chr1.3:63040121-63040140 MS.gene21584:CDS 40.0%
GTCAAGTCCATTTACTCAGA+GGG + chr1.3:63038776-63038795 MS.gene21584:CDS 40.0%
TAAGCATCTTGTGGCAATAG+AGG - chr1.3:63038990-63039009 None:intergenic 40.0%
TTGTCGAGTACTTCAAGGAA+AGG + chr1.3:63040186-63040205 MS.gene21584:CDS 40.0%
! AATTTTCCCAAGGAAAAGGG+TGG + chr1.3:63039517-63039536 MS.gene21584:intron 40.0%
! ATGGAGGATGTCAAGGTTTT+TGG + chr1.3:63038747-63038766 MS.gene21584:CDS 40.0%
! ATTTTCCCAAGGAAAAGGGT+GGG + chr1.3:63039518-63039537 MS.gene21584:intron 40.0%
! TCCCAGGAACATTTTATACC+CGG - chr1.3:63039490-63039509 None:intergenic 40.0%
! TTATTCCCACCCTTTTCCTT+GGG - chr1.3:63039526-63039545 None:intergenic 40.0%
! TTCATTGGTGGCAACACAAT+TGG + chr1.3:63039996-63040015 MS.gene21584:CDS 40.0%
! TTTATTCCCACCCTTTTCCT+TGG - chr1.3:63039527-63039546 None:intergenic 40.0%
!! AGTCTCTAGAATCCGATTGA+AGG + chr1.3:63039281-63039300 MS.gene21584:intron 40.0%
!! GTCTCTAGAATCCGATTGAA+GGG + chr1.3:63039282-63039301 MS.gene21584:intron 40.0%
AGAGGTCCAATGTTCGTTTC+TGG + chr1.3:63039012-63039031 MS.gene21584:CDS 45.0%
AGTACTCGACAAGTAGCTCA+TGG - chr1.3:63040178-63040197 None:intergenic 45.0%
ATTTCCCCACCTTCACTCTT+GGG + chr1.3:63040106-63040125 MS.gene21584:CDS 45.0%
CACACAACCCTCTGAGTAAA+TGG - chr1.3:63038786-63038805 None:intergenic 45.0%
CACATTACGTCGGCAGTATA+AGG - chr1.3:63039131-63039150 None:intergenic 45.0%
CATTTACTCAGAGGGTTGTG+TGG + chr1.3:63038784-63038803 MS.gene21584:CDS 45.0%
CCCGGGTATAAAATGTTCCT+GGG + chr1.3:63039486-63039505 MS.gene21584:intron 45.0%
GACCTCTCATAAGCATCTTG+TGG - chr1.3:63038999-63039018 None:intergenic 45.0%
GCTACTTGTCGAGTACTTCA+AGG + chr1.3:63040181-63040200 MS.gene21584:CDS 45.0%
GGGAAAACTAGCTACACAGA+AGG - chr1.3:63039076-63039095 None:intergenic 45.0%
GGTCAAGTCCATTTACTCAG+AGG + chr1.3:63038775-63038794 MS.gene21584:CDS 45.0%
GTACTCGACAAGTAGCTCAT+GGG - chr1.3:63040177-63040196 None:intergenic 45.0%
GTACTTCAAGGAAAGGAGGA+AGG + chr1.3:63040193-63040212 MS.gene21584:CDS 45.0%
TACTCGACAAGTAGCTCATG+GGG - chr1.3:63040176-63040195 None:intergenic 45.0%
TCCCGGGTATAAAATGTTCC+TGG + chr1.3:63039485-63039504 MS.gene21584:intron 45.0%
TCGAGTACTTCAAGGAAAGG+AGG + chr1.3:63040189-63040208 MS.gene21584:CDS 45.0%
TGCCACAAGATGCTTATGAG+AGG + chr1.3:63038994-63039013 MS.gene21584:CDS 45.0%
TGGTGGCAACACAATTGGAT+TGG + chr1.3:63040001-63040020 MS.gene21584:CDS 45.0%
! CCCAGGAACATTTTATACCC+GGG - chr1.3:63039489-63039508 None:intergenic 45.0%
!! ATCACCATTGACTCTGCCAT+TGG - chr1.3:63038933-63038952 None:intergenic 45.0%
CATTTCCCCACCTTCACTCT+TGG + chr1.3:63040105-63040124 MS.gene21584:CDS 50.0%
CTTGACCCAAGAGTGAAGGT+GGG - chr1.3:63040114-63040133 None:intergenic 50.0%
GGGTGGGAATAAAGTTCCCA+TGG + chr1.3:63039534-63039553 MS.gene21584:intron 50.0%
TCTTGACCCAAGAGTGAAGG+TGG - chr1.3:63040115-63040134 None:intergenic 50.0%
TGCACATACTCTGCCAGTCA+TGG + chr1.3:63040046-63040065 MS.gene21584:CDS 50.0%
TGTGGCAATAGAGGGATCTG+AGG - chr1.3:63038981-63039000 None:intergenic 50.0%
TTGACCCAAGAGTGAAGGTG+GGG - chr1.3:63040113-63040132 None:intergenic 50.0%
! GGATTGGCAGACATAGCCTT+AGG + chr1.3:63040017-63040036 MS.gene21584:CDS 50.0%
! TGGCAGACATAGCCTTAGGT+TGG + chr1.3:63040021-63040040 MS.gene21584:CDS 50.0%
TCGACAAGTAGCTCATGGGG+TGG - chr1.3:63040173-63040192 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 63038747 63040250 63038747 ID=MS.gene21584
chr1.3 mRNA 63038747 63040250 63038747 ID=MS.gene21584.t1;Parent=MS.gene21584
chr1.3 exon 63038747 63039055 63038747 ID=MS.gene21584.t1.exon1;Parent=MS.gene21584.t1
chr1.3 CDS 63038747 63039055 63038747 ID=cds.MS.gene21584.t1;Parent=MS.gene21584.t1
chr1.3 exon 63039879 63040250 63039879 ID=MS.gene21584.t1.exon2;Parent=MS.gene21584.t1
chr1.3 CDS 63039879 63040250 63039879 ID=cds.MS.gene21584.t1;Parent=MS.gene21584.t1
Gene Sequence

>MS.gene21584

ATGGAGGATGTCAAGGTTTTTGGTCTATGGTCAAGTCCATTTACTCAGAGGGTTGTGTGGACATTAAAACTAAAGGGTGTGAGTTATGAGTATTATGGTGAAGATCTTGCAAATAAGAGTAACTTGTTACTGCAATACAATCCAATCTACAAGAAGGTTCCTGTTCTTGTACATAATGGAAAACCAATGGCAGAGTCAATGGTGATTGTTGAATATATTGATGAGACTTGGCCTCAGATCCCTCTATTGCCACAAGATGCTTATGAGAGGTCCAATGTTCGTTTCTGGTCAAAATTCATCGAGGAAAAGGTAAGAAATTTTCTAAGCCTTCTGTGTAGCTAGTTTTCCCTTTCCATAATCAAATTTAAATGACAATACACACCTTATACTGCCGACGTAATGTGACACAATTGACAAATAGTTGAATCTCTTAAACATTACGAGCCAACTTGATATTTAACCAGTAAATATGGAAGAACATTTGTTGATAGAGATCAACCTTTTAAATAGATCTTTGTATCTCGAAAGATAATTAGTCTCTAGAATCCGATTGAAGGGTATATTTGACCAAAAAAATATTTTATACGATTCAATCAAATTTTCCTATTCTTTATTTTTCTTTTATGAAACTCACACACACTAAGGGTGTGTTTGTTTCAAGTTATATTTATTGATTCCCGGGAATAAAATGATAGGAATATATATGCCTATGTTTGTTACAAGTTTACTAAATTTTATTCCCGGGTATAAAATGTTCCTGGGAATAGAAAAATTTTCCCAAGGAAAAGGGTGGGAATAAAGTTCCCATGGAGATGAGAATAAATTCATAAATAGTTACCTATTATAATTCCTATTTTTATGGTTCCTAAGAATATTATAAAGTTAACCAAACATATTTTTCCTAAATACCTTGGAATAAAATTCCCATCTTTATATTCCAAGGAATGTTATTCCTAGGAATAAATTTGATCAACTTGAAACAAACACACCCTAAATATAGAGAAAAAATATACTGCAAGTTCAAACTCGTATTCCAACATATCAAATGTTAACGTAGTTTTTAACCATCAAAGTAATACTTATGAGATTAAATTTTATCCTACAATGACATTGTAATGATTTTCATTTTCAGTCAATGCACATGATGGAATTTTTTCTGTACGATGGAGAACGACAAGAGAGATCAATAAAAGAAACTTTGGAAACTTTGAGAGTGATTGAAAAGGAAAGTGGGCTTAGTGAAAAGATGTTCATTGGTGGCAACACAATTGGATTGGCAGACATAGCCTTAGGTTGGATTGCACATACTCTGCCAGTCATGGAAGAAATTGTTGGAGTCAAGTTCATTACAGTTGATGCATTTCCCCACCTTCACTCTTGGGTCAAGAATTTCTTGGAAATTCCTGCTATAAAAAACAATCTTCCACCCCATGAGCTACTTGTCGAGTACTTCAAGGAAAGGAGGAAGGTGTTTCTTGCATTGACTTGTCATCATCACCATTAG
Protein sequence

>MS.gene21584.t1

MEDVKVFGLWSSPFTQRVVWTLKLKGVSYEYYGEDLANKSNLLLQYNPIYKKVPVLVHNGKPMAESMVIVEYIDETWPQIPLLPQDAYERSNVRFWSKFIEEKSMHMMEFFLYDGERQERSIKETLETLRVIEKESGLSEKMFIGGNTIGLADIALGWIAHTLPVMEEIVGVKFITVDAFPHLHSWVKNFLEIPAIKNNLPPHELLVEYFKERRKVFLALTCHHHH