AlfalfaGEDB | MS.gene21629

M. sativa cultivar XinJiangDaYe / MS.gene21629

KEGG: K13412
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005509 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046872 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF13499.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21629.t1	XP_003611046.1	90.9	517	40	1	1	510	1	517	1.90E-224	788.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21629.t1	Q6I587	72.5	458	125	1	53	509	83	540	4.1e-188	659.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21629.t1	G7KAQ8	90.9	517	40	1	1	510	1	517	1.3e-224	788.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene010622	MS.gene21629	PPI
MS.gene012634	MS.gene21629	PPI
MS.gene072326	MS.gene21629	PPI
MS.gene21629	MS.gene017915	PPI
MS.gene21629	MS.gene50368	PPI
MS.gene21629	MS.gene73393	PPI
MS.gene21629	MS.gene33954	PPI
MS.gene21629	MS.gene062288	PPI
MS.gene21629	MS.gene53433	PPI
MS.gene21629	MS.gene019069	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene21629.t1	MTR_5g009830	97.297	518	5	3	1	510	1	517	1030
MS.gene21629.t1	MTR_8g099095	83.172	517	79	3	1	510	1	516	878
MS.gene21629.t1	MTR_5g009830	96.394	416	6	3	1	408	1	415	816
MS.gene21629.t1	MTR_0028s0170	72.651	479	125	2	37	509	50	528	744
MS.gene21629.t1	MTR_5g089320	68.147	518	156	3	1	509	1	518	742
MS.gene21629.t1	MTR_5g092810	68.866	485	147	3	19	499	48	532	710
MS.gene21629.t1	MTR_3g051770	67.735	499	147	3	14	500	35	531	707
MS.gene21629.t1	MTR_4g132070	65.430	512	161	2	6	501	22	533	704
MS.gene21629.t1	MTR_1g026190	68.043	460	142	2	48	502	66	525	659
MS.gene21629.t1	MTR_1g041150	64.208	461	163	2	48	507	106	565	636

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene21629.t1	AT4G23650	80.000	465	92	1	46	509	64	528	806
MS.gene21629.t1	AT5G12180	68.039	510	162	1	2	510	15	524	748
MS.gene21629.t1	AT5G19360	71.605	486	131	2	26	510	40	519	744
MS.gene21629.t1	AT3G20410	63.602	533	162	6	1	501	1	533	699
MS.gene21629.t1	AT3G20410	63.602	533	162	6	1	501	1	533	699
MS.gene21629.t1	AT1G50700	66.000	500	158	3	3	501	27	515	692
MS.gene21629.t1	AT4G04720	62.984	516	170	3	6	500	5	520	685
MS.gene21629.t1	AT4G04720	62.984	516	170	3	6	500	5	520	685
MS.gene21629.t1	AT1G50700	62.738	526	158	4	3	501	27	541	678
MS.gene21629.t1	AT4G21940	63.655	498	175	2	7	499	45	541	676

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Find 117 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACAGATAGACCGAAAT+CGG	0.419895	5.2:+3451359	None:intergenic
AAAGCTGGTCTCCCCAAACT+AGG	0.529317	5.2:-3448061	MS.gene21629:CDS
AAATCTTAGTACCTAGTTTG+GGG	0.615766	5.2:+3448050	None:intergenic
AAATTATTTGCGACGTTTGT+TGG	0.356767	5.2:+3446739	None:intergenic
AACCAGAATGAAACAATTCA+GGG	0.543661	5.2:-3448462	MS.gene21629:CDS
AATATTCAAAAGCTTTGTAT+AGG	0.371934	5.2:+3447387	None:intergenic
ACAGCTGAAATTCGTTCTTT+AGG	0.241901	5.2:+3449463	None:intergenic
ACCCATGTTGTACTTTGTAA+GGG	0.578215	5.2:+3447027	None:intergenic
ACGTTCAGAGTAATGACCTT+TGG	0.507919	5.2:+3451515	None:intergenic
ACTAAAGAAAGTAGCTCTAA+AGG	0.469525	5.2:-3448429	MS.gene21629:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCTTAGTACCTAGTTTG+GGG	+	chr5.2:3450664-3450683	None:intergenic	30.0%
AACCAGAATGAAACAATTCA+GGG	-	chr5.2:3450249-3450268	MS.gene21629:CDS	30.0%
ACGTAGATTCATTTGTTTAC+TGG	-	chr5.2:3448567-3448586	MS.gene21629:intron	30.0%
ACTAAGAGCAAAAGAGAATA+AGG	+	chr5.2:3448993-3449012	None:intergenic	30.0%
AGAAAAGGACACATAAGTAA+TGG	-	chr5.2:3451452-3451471	MS.gene21629:CDS	30.0%
AGATTAAGATTTACCGACAT+AGG	+	chr5.2:3448744-3448763	None:intergenic	30.0%
ATCTTTGATGCTATTCTTCA+TGG	-	chr5.2:3449143-3449162	MS.gene21629:intron	30.0%
ATTATCACTATCATACTCCT+AGG	+	chr5.2:3449979-3449998	None:intergenic	30.0%
ATTTGTATCCAAATCCTGAT+TGG	-	chr5.2:3450995-3451014	MS.gene21629:intron	30.0%
CAAACTAGGTACTAAGATTT+CGG	-	chr5.2:3450664-3450683	MS.gene21629:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	3446742	3451991	3446742	ID=MS.gene21629
chr5.2	mRNA	3446742	3451991	3446742	ID=MS.gene21629.t1;Parent=MS.gene21629
chr5.2	exon	3451349	3451991	3451349	ID=MS.gene21629.t1.exon1;Parent=MS.gene21629.t1
chr5.2	CDS	3451349	3451991	3451349	ID=cds.MS.gene21629.t1;Parent=MS.gene21629.t1
chr5.2	exon	3450237	3450380	3450237	ID=MS.gene21629.t1.exon2;Parent=MS.gene21629.t1
chr5.2	CDS	3450237	3450380	3450237	ID=cds.MS.gene21629.t1;Parent=MS.gene21629.t1
chr5.2	exon	3449452	3449604	3449452	ID=MS.gene21629.t1.exon3;Parent=MS.gene21629.t1
chr5.2	CDS	3449452	3449604	3449452	ID=cds.MS.gene21629.t1;Parent=MS.gene21629.t1
chr5.2	exon	3448430	3448542	3448430	ID=MS.gene21629.t1.exon4;Parent=MS.gene21629.t1
chr5.2	CDS	3448430	3448542	3448430	ID=cds.MS.gene21629.t1;Parent=MS.gene21629.t1
chr5.2	exon	3448018	3448185	3448018	ID=MS.gene21629.t1.exon5;Parent=MS.gene21629.t1
chr5.2	CDS	3448018	3448185	3448018	ID=cds.MS.gene21629.t1;Parent=MS.gene21629.t1
chr5.2	exon	3447368	3447495	3447368	ID=MS.gene21629.t1.exon6;Parent=MS.gene21629.t1
chr5.2	CDS	3447368	3447495	3447368	ID=cds.MS.gene21629.t1;Parent=MS.gene21629.t1
chr5.2	exon	3446979	3447078	3446979	ID=MS.gene21629.t1.exon7;Parent=MS.gene21629.t1
chr5.2	CDS	3446979	3447078	3446979	ID=cds.MS.gene21629.t1;Parent=MS.gene21629.t1
chr5.2	exon	3446742	3446825	3446742	ID=MS.gene21629.t1.exon8;Parent=MS.gene21629.t1
chr5.2	CDS	3446742	3446825	3446742	ID=cds.MS.gene21629.t1;Parent=MS.gene21629.t1

Gene Sequence

>MS.gene21629

ATGGGCAACCGCATCAGCTCCAAACACAAACCCTCTTCCGATTCTTCTCAAACTCATTCCAAATCACATTCCACTCCTCCTAATCAAACCCCCAAACAATCCACTCACACCCCCACTCCTTCCTCTTCCCCCCTCGGCCGCGTCTTAGGCAAACCCATGGAAGACGTCCGATCAACCTACACCTTTGGCCGCGAACTCGGTCGCGGCCAATTCGGTGTAACCTACTTAGTCACACACAAACTCACCAAAGAACAATTCGCCTGCAAATCTATCGCTACTCGGAAACTCATCCGCCGTGATGATCTCGACGATATTCGCCGTGAAGTTCAGATCATGCATCATCTCACCGGTCACCGGAACATTGTTGAGCTTAAAGGTGCTTTTGAGGATCGTCATTCGGTTAATCTCATCATGGAGCTTTGTGCTGGTGGTGAGCTTTTTGACAGGATTATATCCAAAGGTCATTACTCTGAACGTGCTGCGGCTGAGCTATGTCGCCAGATTGTCACTGTTGTTCATAATTGTCATACTATGGGTGTTATGCATAGAGATTTGAAGCCTGAGAATTTCTTGTTTCTTAGTAAGCATGAGAATTCGCCGCTTAAAGCTACCGATTTCGGTCTATCTGTGTTTTTCAAGCCTGGTTAGTAAGCTCCCTTTAGCTTAATTAAGTGTGTTTGGTTCTACGATGACAAAAATTAATTTTAGTGCATGTTTGGTTTATAATGAGTTTGTTGGGGTGAGTGTAGTTTTTTGAAAACTCACGGCGACTCACCATGATTTCTACAAACCCTCGATGATTCCAAACATAGTTTCTTAAAAATTGATTATAGTTAAAAGTGAGTTGAATGTTGAGTAATTTATGTTTGGATATGTTCATGTAAAAAGTAAGTTGAACAATTCTAGTCGAGAGCAAATAAACTTGTCAATTTTGCACTCAAAATCAATTCTAGTCGAGAGCAAATGAGAGCAAATATACATGTTAAAAATTAATTTTACTCCTTTAGAATCAATTTTGGATTCTCCACAGGTGGAACCAACGTACACCAAGTGCTAATAGTATAACCGCTTATCATTTAGTGCTTTTGGGCAAGTTGTTTACGTAACAAAAAGAACATTTTTATAGACTTTTAAAGAATCGACTATGCAACTTCCAAAACGTTATTTCTACCATATTTGATTACTTAACGTTAGCATTTTCCATAAAATAAATTAAAATTATTTTTATATAGAGTGATGCTAAATGGTGCGAACCATCATGTGTGAAATTCAACGAATTGTGTAACTCAAACACTTAAATAGCATTGTTTTAATAGAAACGTAATAATACAAATTCCATGTTCCGGAATACACGGTGGTTGGGGTTAATTTTTTTATTTTTTTTTAATAAGAATAATAACAACACTCAGATTTTGTGGGATACATGGGGTGGTGGGTGTTCGTCAAATTTCGTTTAACCATTATTTACACCAACAAGCATTTCTCTTTTATATAAACTATATGTTGTTTAATTAGTTATCCAGCAGCATCATTTCAAACATAGGCTTAGTTAATTTGTTAGTTCCATTTTACTGATGTTAATATTTTCTTTGAAACACTTTTTGAGAACAGAAGATGTATTCAAAGATCTTGTTGGGAGTGCATATTATGTTGCTCCTGAGGTGTTGCGTAGAAGTTATGGACCTGAAGCTGATATTTGGAGTGCTGGAATTATTTTGTACATTCTCCTCTCTGGTGTTCCTCCCTTCTGGGCAGGTATACTTCCTTTCTTTATTGTTTTTGAATACTCAGTCTCATGCATACTATTGTGTAGCTGCATGAAGTCACGTAGATTCATTTGTTTACTGGGTGAGCTTTCTATAAGATTTTGAACTTCAATTTAGTTAGATAAGGTGTTTGTGCATCAATGTGCAACTTTGGTTGTCATGTCTCAGTTGTTTTGACAATACCTTATGTAGAATTCTGGTGGATTATCAATTGCTTAGTTAGTTAGGATAAGCCTATGTCGGTAAATCTTAATCTGTTATATCTTTCTGATTATTTTAGTTACATGGATGTTGAAATAACTGTTGTAACTACCTAGACCGGATTGGGAGAGCTGCTTATGTAAGTCTAAGCCTGATGCTTTTAAAGCATGATTAGATTGACTGATTCTAGATCAACAAAACTGTGATGCAAGTGAGTGAACTCAATGAGGATGCAGGAGACAATTGCTCCGAATTCGATAAACTTTGTGTTCTCTTCTTTTCCTTATTCTCTTTTGCTCTTAGTTTTTTCTTCTCTTTATCAAAAAACTGCTGAATTCATAACACCTTACTTTGATTACAGTTTAGTATATGGTACCTTTCTGATCTTTCTCACACTTTCGTCTTCTACTTTCTGTGAAGAAAATGAACAGGGTATCTTTGATGCTATTCTTCATGGACATCTTGATTTCGCATCTGATCCTTGGCCTAAAATATCGAGTATTGCTAAAGATCTGATCAAGAAGATGTTGCGAGCTGACCCTAAAGAACGAATTTCAGCTGTTGAAGTCCTTGGTAAGTTTTACTTTTGTTGTAAATGCAAATTGTTTAGTTTTACACCATAAGGGTTTGTATTTTACTTGAATCATGTTGACTCTGTGGATCAGCTAGGCATTGTTGGTCTCTAACCATATCTTTGAGAGATATGAACTTTAGGATGTACAATAAAGTGAAAGTGAATCCGAATAACTGGCAGGAAAAAGGATATTAATTTTGAAAGAAGCTATCGTGTATCACTTGATTGATCCATGATATTGCTAAGAATAATTAAGTAGCATGTCTCATTGAATAGGATAAAGAGAAGATGGACATTTATTTTGCACATACACACTTCGATCCCCTTTCCAGAATAAAAGAAAAGGTAGGTGATGACATATGCATATCTGCCAAGTGTCATATTTCTTTTTTGTAAAATTCATGGACGTTGCACAACTATTTCCTGGACAAATGCATTGTTTCTTCTAATTACTTGACTTGATATTTTCTCTCTGCTTGACTTCTTCATCTACATTGTACTCTCTTTTGCCTCTCACCACATCCCCCTTATTGCATTTTTCTATTTTCTCTGAATGAGTAGTATGCATGAGTTTGTTTTGTGAATATTTTTCTGCTTTGAAAGTTACAACTACCTTTGCCTCCTTGGCTCGCTTTCTTTCGATATTGTAGCCATATGATTGGGTTATGCTGCTTCTTGGTTAAATTGGCTTGCCCTAGGAGTATGATAGTGATAATGTGTTTATTTATTTATTTATTTATTTTGAATAAGTGTGTTTATTTTACTGTTACGTGCTCACATACACTGCATGGTTTCTCTAGTCCTGTTCTCTTTTCCCTTTTCTCTAGCCTGGACCATTTGAGCTGTATCATGAAAATTCTCTTATTTGAGTCAACTAAACACAATAAATTGTTATATATACACTCCAGACCATCCTTGGATGAAAGAAGATGGAGCATCTGATAAGCCTCTCGATATTGCTGTCTTAACCAGAATGAAACAATTCAGGGCAATGAACAAACTAAAGAAAGTAGCTCTAAAGGTAAATAATCCTTTACAATCATTTTGTTATATAAATCAAGGCCTCAAAATCAAGCTTTTAGTAAAGTATCTAGAATTATGGTTATATTTAAATCCTTGAGGATAAAAAATGGTAAATATTAATAGAAAATGACAAATTATGAATTAAGTAAATGACGGTTAAAAAAAGTAACTAAATAGGGAGAAGAAATTCATAATGGAACAGGATGAAAGGATAATATCTGAAAATTCTAAATGTTTTGCAGGTTATTGCTGAAAATCTTTCTGAAGAAGAAATTATTGGCTTGAAGGAAATGTTTAAATCCATGGACACAGATAACAGTGGAACAATCACTTTTGAAGAGTTGAAAGCTGGTCTCCCCAAACTAGGTACTAAGATTTCGGAGTCTGAAGTGAGGCAGTTGATGGAAGCGGTAAGATTTCTTTTACACCATTACTTCTATGTTACAGTTTATTACAACTTGTATTTCTGATCCAATAACGTAATGTTTGATTATAGATTACTGTGTATATTTAGTGACAGAGACACACTCGCTGACATACACACACTCTTGCCCATCTATACTAGTAGTACCTGCAGAGTTATACTTTTGTGGCTTAACCACTGGAATTTAATTTCCGTAGCTAACTCTCTGCATATGTCACATGTATCGGATAAATGTATTCTCTGCAAGTTCGTCCCCTTGATGATTATTTGTATCCAAATCCTGATTGGTTCTTGTAATTAACGTAACGGGTGAGGCCTGATGTGCTGCATTTATAGAACACCCATATTTTCCATTGATATTGTATAATCATATACGTATTAGGGTGCTAGGAAAATAGTTGAATACTATATTTAGAGCTGTTTAAAATTGTGATTCCAAGTTTACCACTTCTCTTGATGTCACTGATTTTTTTCCCATCTATTATAATTTATAACATCTTATTTGCAGGCTGATGTTGACGGAAATGGAACCATTGATTATATTGAATTTATAACAGCTACCATGCACTTGAATAGAATGGAAAGAGAGGACCACCTATACAAAGCTTTTGAATATTTTGACAACGACAAAAGCGGGTAATCTCTTTTTAGGATTTTTTTTTATCAGAGGCCTCTCTTATTATAAATGAATTTGAACATGACATGGTCCTGCTATATGAATGAGAAAAGGACACATAAGTAATGGCCGGTCTTACAATTCTTGTGCCTTTCTCACCACACAGATATAACCTTTTCACGCTAGTTAGTAACATGAGAGGATCTTGGTCTTCTTCCTACTTTTTCATTCACATTTTTATCAACACACCTGTATTACCTTGGTTGTTGAATAACATTTTGGTCTATTTTCTTGCTCCTGTTTTCATAGGTACATTACAAAAGAAGAGTTGGAATCTGCCCTTACAAAGTACAACATGGGTGATGAGAAAACAATAAAGGAGATTATTGACGAAGTTGATTCAGATAATGTACCCACTTTCTTCCTTTACTTTTTCCTTTGTCTCGGCCTCTCGGGTCACATTTTCGTTCTACTTGATAGTTTATCCAGTCCTAAAATAAAATTGTAAATGTTTGTATGTTATTATTGTTTAGTTGTTCATTGCATCCCAAATCTCTTGCAGGATGGAAGAATTAACTATGAGGAGTTTGTAGCCATGATGAGGAAAGGCAATCCAGACTTGATAACCAACAAACGTCGCAAATAA

Protein sequence

>MS.gene21629.t1

MGNRISSKHKPSSDSSQTHSKSHSTPPNQTPKQSTHTPTPSSSPLGRVLGKPMEDVRSTYTFGRELGRGQFGVTYLVTHKLTKEQFACKSIATRKLIRRDDLDDIRREVQIMHHLTGHRNIVELKGAFEDRHSVNLIMELCAGGELFDRIISKGHYSERAAAELCRQIVTVVHNCHTMGVMHRDLKPENFLFLSKHENSPLKATDFGLSVFFKPEDVFKDLVGSAYYVAPEVLRRSYGPEADIWSAGIILYILLSGVPPFWAENEQGIFDAILHGHLDFASDPWPKISSIAKDLIKKMLRADPKERISAVEVLDHPWMKEDGASDKPLDIAVLTRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGTKISESEVRQLMEAADVDGNGTIDYIEFITATMHLNRMEREDHLYKAFEYFDNDKSGYITKEELESALTKYNMGDEKTIKEIIDEVDSDNDGRINYEEFVAMMRKGNPDLITNKRRK