Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21650.t1 | XP_003611015.2 | 94.6 | 1040 | 49 | 4 | 1 | 1039 | 1 | 1034 | 0.00E+00 | 1887.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21650.t1 | Q9T014 | 46.2 | 1078 | 472 | 16 | 2 | 1039 | 27 | 1036 | 1.0e-246 | 854.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21650.t1 | G7KAM7 | 94.6 | 1040 | 49 | 4 | 1 | 1039 | 1 | 1034 | 0.0e+00 | 1887.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene21650 | MS.gene036180 | PPI |
| MS.gene21650 | MS.gene49369 | PPI |
| MS.gene21650 | MS.gene50554 | PPI |
| MS.gene21650 | MS.gene39936 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21650.t1 | MTR_5g009530 | 95.288 | 1040 | 42 | 4 | 1 | 1039 | 1 | 1034 | 0.0 | 2039 |
| MS.gene21650.t1 | MTR_5g009530 | 94.995 | 979 | 42 | 4 | 1 | 978 | 1 | 973 | 0.0 | 1911 |
| MS.gene21650.t1 | MTR_5g009530 | 93.781 | 804 | 43 | 4 | 1 | 803 | 1 | 798 | 0.0 | 1548 |
| MS.gene21650.t1 | MTR_8g027985 | 51.250 | 800 | 334 | 15 | 274 | 1039 | 187 | 964 | 0.0 | 729 |
| MS.gene21650.t1 | MTR_2g085210 | 40.618 | 842 | 394 | 16 | 271 | 1039 | 67 | 875 | 1.71e-180 | 548 |
| MS.gene21650.t1 | MTR_5g085250 | 47.688 | 346 | 169 | 3 | 694 | 1038 | 204 | 538 | 1.01e-108 | 349 |
| MS.gene21650.t1 | MTR_5g085250 | 47.688 | 346 | 169 | 3 | 694 | 1038 | 237 | 571 | 8.50e-108 | 348 |
| MS.gene21650.t1 | MTR_5g085250 | 47.688 | 346 | 169 | 3 | 694 | 1038 | 341 | 675 | 3.01e-106 | 347 |
| MS.gene21650.t1 | MTR_2g085210 | 34.763 | 653 | 323 | 14 | 271 | 850 | 67 | 689 | 1.22e-94 | 317 |
| MS.gene21650.t1 | MTR_2g085210 | 34.763 | 653 | 323 | 14 | 271 | 850 | 67 | 689 | 1.43e-94 | 316 |
| MS.gene21650.t1 | MTR_2g016160 | 30.323 | 155 | 105 | 2 | 781 | 932 | 113 | 267 | 5.04e-13 | 71.6 |
| MS.gene21650.t1 | MTR_1g090827 | 23.643 | 258 | 183 | 9 | 788 | 1035 | 21 | 274 | 6.63e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21650.t1 | AT4G11110 | 47.977 | 1038 | 455 | 17 | 25 | 1039 | 61 | 1036 | 0.0 | 882 |
| MS.gene21650.t1 | AT2G46340 | 44.802 | 1087 | 487 | 25 | 6 | 1039 | 3 | 1029 | 0.0 | 798 |
| MS.gene21650.t1 | AT2G46340 | 44.802 | 1087 | 487 | 25 | 6 | 1039 | 3 | 1029 | 0.0 | 798 |
| MS.gene21650.t1 | AT1G53090 | 40.482 | 788 | 391 | 12 | 277 | 1039 | 60 | 794 | 0.0 | 553 |
| MS.gene21650.t1 | AT1G53090 | 40.482 | 788 | 391 | 12 | 277 | 1039 | 60 | 794 | 0.0 | 553 |
| MS.gene21650.t1 | AT1G53090 | 40.482 | 788 | 391 | 12 | 277 | 1039 | 60 | 794 | 0.0 | 553 |
| MS.gene21650.t1 | AT3G15354 | 40.000 | 815 | 407 | 14 | 271 | 1039 | 66 | 844 | 0.0 | 552 |
| MS.gene21650.t1 | AT3G15354 | 39.264 | 815 | 405 | 15 | 271 | 1039 | 66 | 836 | 1.07e-174 | 532 |
| MS.gene21650.t1 | AT3G15354 | 44.816 | 598 | 284 | 9 | 484 | 1039 | 1 | 594 | 1.89e-165 | 499 |
| MS.gene21650.t1 | AT3G15354 | 44.816 | 598 | 284 | 9 | 484 | 1039 | 1 | 594 | 1.89e-165 | 499 |
| MS.gene21650.t1 | AT1G53090 | 46.274 | 577 | 285 | 8 | 484 | 1039 | 1 | 573 | 1.15e-164 | 497 |
| MS.gene21650.t1 | AT2G32950 | 43.902 | 410 | 206 | 5 | 629 | 1038 | 175 | 560 | 2.29e-111 | 357 |
| MS.gene21650.t1 | AT2G32950 | 43.902 | 410 | 206 | 5 | 629 | 1038 | 288 | 673 | 7.78e-110 | 356 |
| MS.gene21650.t1 | AT1G53090 | 34.775 | 601 | 317 | 10 | 277 | 852 | 60 | 610 | 4.22e-99 | 326 |
| MS.gene21650.t1 | AT3G15354 | 34.505 | 626 | 331 | 12 | 271 | 850 | 66 | 658 | 7.31e-99 | 327 |
| MS.gene21650.t1 | AT5G52250 | 34.877 | 324 | 184 | 11 | 726 | 1036 | 71 | 380 | 8.97e-43 | 161 |
| MS.gene21650.t1 | AT5G23730 | 34.627 | 335 | 179 | 12 | 727 | 1035 | 41 | 361 | 1.17e-42 | 160 |
| MS.gene21650.t1 | AT2G21390 | 24.419 | 258 | 181 | 9 | 788 | 1035 | 21 | 274 | 1.70e-11 | 69.3 |
| MS.gene21650.t1 | AT3G49660 | 27.203 | 261 | 164 | 13 | 729 | 980 | 27 | 270 | 3.94e-11 | 66.2 |
Find 224 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAATTCAATTAGTGATAT+TGG | 0.180525 | 5.2:+3189840 | MS.gene21650:CDS |
| TGGAAAGTTTAAATATATTT+AGG | 0.190587 | 5.2:+3190447 | MS.gene21650:CDS |
| AACATCTTCCTCTGTTGATA+TGG | 0.226062 | 5.2:+3190625 | MS.gene21650:CDS |
| CTACAATCTGAAGTGATTAA+TGG | 0.230123 | 5.2:+3192814 | MS.gene21650:CDS |
| TATCAGATTGGAAATAATTC+AGG | 0.230148 | 5.2:+3189813 | MS.gene21650:CDS |
| GTTCTTAGTATATCTTTATC+TGG | 0.244121 | 5.2:-3193243 | None:intergenic |
| TGTTGGATCCACCTCGTTTC+CGG | 0.261043 | 5.2:+3189908 | MS.gene21650:CDS |
| ATTCCGATTCTGCATCTTCT+TGG | 0.266535 | 5.2:-3192879 | None:intergenic |
| TCCTCTCATTTGCTTGCCTT+TGG | 0.266707 | 5.2:+3195924 | MS.gene21650:CDS |
| AATCGGAAACTTTGCAATCT+TGG | 0.268860 | 5.2:-3190327 | None:intergenic |
| GACGAGAGTGCGAGGGTTAC+TGG | 0.269493 | 5.2:+3190668 | MS.gene21650:CDS |
| ATTTAGGAAAATTGTGGATT+TGG | 0.269624 | 5.2:+3190463 | MS.gene21650:CDS |
| CATTCAGTCGTGCTAGATTT+AGG | 0.275646 | 5.2:-3190368 | None:intergenic |
| CCAAACTTGTGTGAAGTAAT+TGG | 0.283179 | 5.2:-3197232 | None:intergenic |
| CCAATTACTTCACACAAGTT+TGG | 0.299695 | 5.2:+3197232 | MS.gene21650:CDS |
| CTGATAATTCATTGAAGATC+TGG | 0.300298 | 5.2:+3196078 | MS.gene21650:CDS |
| AAAGTGTTACAAATGGTTTA+AGG | 0.300773 | 5.2:+3197373 | MS.gene21650:CDS |
| TCTTTCACATATCGAATTAC+TGG | 0.302636 | 5.2:-3190858 | None:intergenic |
| AGAGAGCATATAACATTTGC+AGG | 0.304868 | 5.2:-3193414 | None:intergenic |
| GGAATTCAATTAGTGATATT+GGG | 0.319812 | 5.2:+3189841 | MS.gene21650:CDS |
| TACATGTTTACCATCATATT+GGG | 0.324239 | 5.2:-3189643 | None:intergenic |
| ATACTCAGCAAACCCTGATT+TGG | 0.324942 | 5.2:-3190060 | None:intergenic |
| CTACATGTTTACCATCATAT+TGG | 0.324958 | 5.2:-3189644 | None:intergenic |
| CAATCTCAGTTCATTTGTAT+TGG | 0.326529 | 5.2:-3193136 | None:intergenic |
| CATTAATCACTTCAGATTGT+AGG | 0.328405 | 5.2:-3192813 | None:intergenic |
| AATTGGTCTGTGACCCAAAA+AGG | 0.335217 | 5.2:+3193273 | MS.gene21650:CDS |
| GTTCATTTGTATTGGAGATT+GGG | 0.336479 | 5.2:-3193128 | None:intergenic |
| ATTTAATGTAAGATGGATAA+AGG | 0.342528 | 5.2:-3190523 | None:intergenic |
| TGAAGTGATTAATGGATTAC+AGG | 0.351762 | 5.2:+3192822 | MS.gene21650:CDS |
| AGTTCATTTGTATTGGAGAT+TGG | 0.355893 | 5.2:-3193129 | None:intergenic |
| AATTCTTCAACTGTTTCATA+TGG | 0.361630 | 5.2:-3189708 | None:intergenic |
| GCTTTAGGAACCTTCTTTGA+TGG | 0.364422 | 5.2:+3193321 | MS.gene21650:CDS |
| TGTTTCAGAAATCTGAACTT+TGG | 0.364662 | 5.2:-3193205 | None:intergenic |
| CAAAGCTTAGCTGTGTTTGC+TGG | 0.367423 | 5.2:+3193568 | MS.gene21650:CDS |
| GAAGTTCAAATGCCTTCAAT+TGG | 0.370322 | 5.2:+3190725 | MS.gene21650:CDS |
| ACATCTCAACAGCAGGATAA+TGG | 0.370679 | 5.2:-3193536 | None:intergenic |
| ACAAAGATGATATCCAAATC+AGG | 0.375965 | 5.2:+3190047 | MS.gene21650:CDS |
| TACTAAGAACTCGCGAGAAT+TGG | 0.379466 | 5.2:+3193256 | MS.gene21650:CDS |
| TGGCAGAATCTTTATCAGAT+TGG | 0.379730 | 5.2:+3189801 | MS.gene21650:CDS |
| GCGGTGATGCGAATCAGAAT+TGG | 0.379858 | 5.2:+3190183 | MS.gene21650:CDS |
| CATAAAAGTAAAGATGCTTT+AGG | 0.380101 | 5.2:+3193306 | MS.gene21650:CDS |
| CGGTGATGCGAATCAGAATT+GGG | 0.380736 | 5.2:+3190184 | MS.gene21650:CDS |
| CTTCCTTAGGATGTTCTGAT+AGG | 0.384102 | 5.2:-3191602 | None:intergenic |
| CTCTAATTGTTCAACCAACT+TGG | 0.385891 | 5.2:-3192953 | None:intergenic |
| ACATCTTCCTCTGTTGATAT+GGG | 0.391461 | 5.2:+3190626 | MS.gene21650:CDS |
| GAAGATTACTTTGCTTCTGC+TGG | 0.394367 | 5.2:+3193453 | MS.gene21650:CDS |
| AAATCTGGCCAGCGCAAATC+AGG | 0.395977 | 5.2:+3190419 | MS.gene21650:CDS |
| ATCCCTCGTGTATCTAATTC+AGG | 0.401971 | 5.2:+3190821 | MS.gene21650:CDS |
| CCATCATCACGTCCAACAAC+AGG | 0.401981 | 5.2:+3191657 | MS.gene21650:CDS |
| AGAAAATCCTTGGTTTCCTC+TGG | 0.410497 | 5.2:+3193021 | MS.gene21650:CDS |
| ATCAGTCTCTTTACCAGAGA+TGG | 0.417463 | 5.2:-3197266 | None:intergenic |
| GAAATTCTTTGGGCACAATC+AGG | 0.417682 | 5.2:+3195862 | MS.gene21650:CDS |
| TGATGAAAGAATTCAGTTAG+AGG | 0.419881 | 5.2:+3189575 | MS.gene21650:CDS |
| TTGAGAGAATGGTTAAAATC+TGG | 0.420168 | 5.2:+3190404 | MS.gene21650:CDS |
| TTTCAATAGTACCCTGTTGT+TGG | 0.422547 | 5.2:-3191669 | None:intergenic |
| CCGCAGCGACGTCTAGTGCT+TGG | 0.432510 | 5.2:+3189880 | MS.gene21650:CDS |
| GCTCGCAGCCTAACCCTGTC+TGG | 0.432747 | 5.2:+3196140 | MS.gene21650:CDS |
| GGATCTATTGATCCCATCTC+TGG | 0.434827 | 5.2:+3197253 | MS.gene21650:CDS |
| AATCTGAACTTTGGATCTCA+TGG | 0.436953 | 5.2:-3193196 | None:intergenic |
| TAGTATGTCCAGACAGGGTT+AGG | 0.437776 | 5.2:-3196148 | None:intergenic |
| CGCAGCGACGTCTAGTGCTT+GGG | 0.439798 | 5.2:+3189881 | MS.gene21650:CDS |
| GAGTAATGCAGTTGAACATT+TGG | 0.442426 | 5.2:+3189965 | MS.gene21650:CDS |
| CCACTTTGCCTGATTTGCGC+TGG | 0.443062 | 5.2:-3190427 | None:intergenic |
| GGTTGAACAATTAGAGTGCT+TGG | 0.444330 | 5.2:+3192960 | MS.gene21650:CDS |
| GGTGGATGACTCACACTCTC+GGG | 0.449991 | 5.2:+3190484 | MS.gene21650:CDS |
| AAACAAATGAAGACTGGTAT+TGG | 0.453637 | 5.2:+3190266 | MS.gene21650:CDS |
| CAATGTCTGATCTTCATCAT+AGG | 0.456778 | 5.2:+3191562 | MS.gene21650:CDS |
| TAATCTTGTGATCCAATTGA+AGG | 0.460693 | 5.2:-3190737 | None:intergenic |
| ATCAGATTGGAAATAATTCA+GGG | 0.462085 | 5.2:+3189814 | MS.gene21650:CDS |
| GTTGGACGTGATGATGGTTC+AGG | 0.462126 | 5.2:-3191651 | None:intergenic |
| TCAGTTATGGGATGCTAGTA+CGG | 0.463758 | 5.2:+3194703 | MS.gene21650:intron |
| GTGGGTTTGTCTGTTGCTGA+TGG | 0.464615 | 5.2:+3196818 | MS.gene21650:CDS |
| AAATATATTTAGGAAAATTG+TGG | 0.466422 | 5.2:+3190457 | MS.gene21650:CDS |
| TGATAATTCATTGAAGATCT+GGG | 0.466607 | 5.2:+3196079 | MS.gene21650:CDS |
| ATTGGAAATAATTCAGGGAA+TGG | 0.468351 | 5.2:+3189819 | MS.gene21650:CDS |
| CCTGTTGTTGGACGTGATGA+TGG | 0.468695 | 5.2:-3191657 | None:intergenic |
| CTCAATAAAACCTCTTCGGT+TGG | 0.468709 | 5.2:+3196104 | MS.gene21650:CDS |
| TATGCTCTCTAAGCTTTGAC+CGG | 0.469053 | 5.2:+3193427 | MS.gene21650:CDS |
| GCATGGCTTAAGAAAATCCT+TGG | 0.470022 | 5.2:+3193011 | MS.gene21650:CDS |
| GTCTGGACATACTAATGAAA+AGG | 0.473081 | 5.2:+3196157 | MS.gene21650:CDS |
| TCATGATTATTAGCAGTCTC+AGG | 0.473314 | 5.2:-3190704 | None:intergenic |
| TTTCATTAGTATGTCCAGAC+AGG | 0.474015 | 5.2:-3196154 | None:intergenic |
| GTAATTCGATATGTGAAAGA+TGG | 0.474195 | 5.2:+3190861 | MS.gene21650:CDS |
| AGTTTGTTTCAAGTGTGTGC+TGG | 0.474338 | 5.2:+3197302 | MS.gene21650:CDS |
| TTCTTAGTATATCTTTATCT+GGG | 0.477468 | 5.2:-3193242 | None:intergenic |
| AGACAAAATCCAGCTTCCTT+AGG | 0.483629 | 5.2:-3191615 | None:intergenic |
| ATGTACATGACCTGGTTTGA+TGG | 0.483711 | 5.2:-3190551 | None:intergenic |
| ATGTATAAAAGTGTTACAAA+TGG | 0.485163 | 5.2:+3197366 | MS.gene21650:CDS |
| ATCAAACCAGGTCATGTACA+TGG | 0.485167 | 5.2:+3190553 | MS.gene21650:CDS |
| TTTGGCGGCTGCGGAAAGTA+AGG | 0.486066 | 5.2:+3189983 | MS.gene21650:CDS |
| AGACCAAGAAGATGCAGAAT+CGG | 0.486392 | 5.2:+3192876 | MS.gene21650:CDS |
| GGTAGCAATTTAATGTAAGA+TGG | 0.487289 | 5.2:-3190530 | None:intergenic |
| AATCCTTGGTTTCCTCTGGC+TGG | 0.487954 | 5.2:+3193025 | MS.gene21650:CDS |
| TTGGAAATAATTCAGGGAAT+GGG | 0.490364 | 5.2:+3189820 | MS.gene21650:CDS |
| AAAACAAACGGCAGGTAAAA+GGG | 0.490416 | 5.2:+3190589 | MS.gene21650:CDS |
| TAGAAGTCCCTGGTGTGTAT+TGG | 0.493208 | 5.2:+3195989 | MS.gene21650:CDS |
| GGATGTTCTGATAGGAAAGC+TGG | 0.493573 | 5.2:-3191594 | None:intergenic |
| GGATCTCAATAAAACCTCTT+CGG | 0.497863 | 5.2:+3196100 | MS.gene21650:CDS |
| AGTTGAACATTTGGCGGCTG+CGG | 0.498441 | 5.2:+3189974 | MS.gene21650:CDS |
| TCAGAACATCCTAAGGAAGC+TGG | 0.499024 | 5.2:+3191606 | MS.gene21650:CDS |
| TGGTGGATGACTCACACTCT+CGG | 0.500502 | 5.2:+3190483 | MS.gene21650:CDS |
| GTGAACATGAAAAGAGGGCT+TGG | 0.501727 | 5.2:+3194747 | MS.gene21650:CDS |
| GAGCAAAATCAGACAAAGGC+AGG | 0.503141 | 5.2:+3190161 | MS.gene21650:CDS |
| CTTCTTGCTGCCAATTCAAG+TGG | 0.504977 | 5.2:+3197343 | MS.gene21650:CDS |
| GATATTGGGTTGATTAGTAG+TGG | 0.505458 | 5.2:+3189855 | MS.gene21650:CDS |
| TTCATTTGTATTGGAGATTG+GGG | 0.507234 | 5.2:-3193127 | None:intergenic |
| AAGATTACTTTGCTTCTGCT+GGG | 0.507710 | 5.2:+3193454 | MS.gene21650:CDS |
| TAGGAAAATTGTGGATTTGG+TGG | 0.511869 | 5.2:+3190466 | MS.gene21650:CDS |
| ACTGCAGCATCGCTGTGAAT+CGG | 0.512278 | 5.2:-3190344 | None:intergenic |
| TTACAGCAAGCTTGAAGTGC+GGG | 0.514348 | 5.2:+3193362 | MS.gene21650:CDS |
| ACGAGAGTGCGAGGGTTACT+GGG | 0.515885 | 5.2:+3190669 | MS.gene21650:CDS |
| CAGTTATGGGATGCTAGTAC+GGG | 0.517815 | 5.2:+3194704 | MS.gene21650:intron |
| GTCGTAAAATCCCAATATGA+TGG | 0.518250 | 5.2:+3189633 | MS.gene21650:CDS |
| CGGGTCTACACACCTCGAAA+AGG | 0.518792 | 5.2:-3190955 | None:intergenic |
| CATGGGAAGCGACTTATAGT+AGG | 0.520691 | 5.2:-3197209 | None:intergenic |
| GATATTGTGCAACCTCCCTC+AGG | 0.523069 | 5.2:-3190905 | None:intergenic |
| GGTTAGGCTGCGAGCACTAG+TGG | 0.523379 | 5.2:-3196132 | None:intergenic |
| ACATAAATGCGATCAGAAGC+TGG | 0.525523 | 5.2:-3190128 | None:intergenic |
| AATTCAGTTAGAGGCTGTTG+AGG | 0.529039 | 5.2:+3189584 | MS.gene21650:CDS |
| TAATTGTTCAACCAACTTGG+AGG | 0.530716 | 5.2:-3192950 | None:intergenic |
| GTGAAAGATGGGAAAATAAG+TGG | 0.531333 | 5.2:+3190873 | MS.gene21650:CDS |
| AGAGGAAGATGTTACTTGCT+CGG | 0.532696 | 5.2:-3190615 | None:intergenic |
| CTGTTTGACATCTCAACAGC+AGG | 0.533413 | 5.2:-3193543 | None:intergenic |
| AATACAGTGAACATGAAAAG+AGG | 0.539565 | 5.2:+3194741 | MS.gene21650:CDS |
| TAATGCAGTTGAACATTTGG+CGG | 0.540996 | 5.2:+3189968 | MS.gene21650:CDS |
| GTGATGTTCATCGAGGAATA+CGG | 0.544130 | 5.2:+3190024 | MS.gene21650:CDS |
| AGATTATCGTAACAGATATG+AGG | 0.544583 | 5.2:+3190754 | MS.gene21650:CDS |
| CAAGCACTAGACGTCGCTGC+GGG | 0.545238 | 5.2:-3189879 | None:intergenic |
| TCTAGTGCTTGGGAGGATGT+TGG | 0.545873 | 5.2:+3189891 | MS.gene21650:CDS |
| ATCTTTATCTGGGTGATCTG+TGG | 0.548330 | 5.2:-3193232 | None:intergenic |
| TAATTCGATATGTGAAAGAT+GGG | 0.552192 | 5.2:+3190862 | MS.gene21650:CDS |
| CTCATCGAAAGAGAAGAAGC+AGG | 0.554730 | 5.2:+3192921 | MS.gene21650:CDS |
| TTTCCTATCAGAACATCCTA+AGG | 0.555337 | 5.2:+3191599 | MS.gene21650:CDS |
| TCTTCTCTTTCGATGAGATG+AGG | 0.557563 | 5.2:-3192915 | None:intergenic |
| GTTTCAAGTGTGTGCTGGAG+AGG | 0.558709 | 5.2:+3197307 | MS.gene21650:CDS |
| TCAGTCTCTTTACCAGAGAT+GGG | 0.559728 | 5.2:-3197265 | None:intergenic |
| TCATCAAACATCTACTGCCT+CGG | 0.561737 | 5.2:+3190926 | MS.gene21650:CDS |
| TTCGCAATCTTAGAAGTCCC+TGG | 0.562968 | 5.2:+3195979 | MS.gene21650:CDS |
| AATCAGAAACAAATGAAGAC+TGG | 0.563404 | 5.2:+3190260 | MS.gene21650:CDS |
| CAAAGATGATATCCAAATCA+GGG | 0.570823 | 5.2:+3190048 | MS.gene21650:CDS |
| AAAAGTAAGCACTTTCAAGA+TGG | 0.572294 | 5.2:-3193173 | None:intergenic |
| TTGGAGATTGGGGACACTGT+GGG | 0.573052 | 5.2:-3193117 | None:intergenic |
| AAGGAGGGTGTAGGACCCGC+AGG | 0.573680 | 5.2:+3190002 | MS.gene21650:CDS |
| AAGTGGTATGCGAGTCCTGA+GGG | 0.573844 | 5.2:+3190890 | MS.gene21650:CDS |
| AGTAAGGGTGTTGTACGTAA+AGG | 0.574103 | 5.2:+3190104 | MS.gene21650:CDS |
| CTCAAGTTCAACATAAACAT+TGG | 0.574254 | 5.2:+3189781 | MS.gene21650:CDS |
| CATCTTCCTCTGTTGATATG+GGG | 0.576607 | 5.2:+3190627 | MS.gene21650:CDS |
| CTTGCACAAACCATCAAAGA+AGG | 0.577758 | 5.2:-3193331 | None:intergenic |
| TCAAACCAGGTCATGTACAT+GGG | 0.577858 | 5.2:+3190554 | MS.gene21650:CDS |
| AGTACAATCATCACTTCCAC+TGG | 0.586568 | 5.2:-3194807 | None:intergenic |
| AATCAGAATTGGGGTAAGAT+CGG | 0.586685 | 5.2:+3190194 | MS.gene21650:CDS |
| GAAGAGGCAGAGAGGAGGCA+TGG | 0.588049 | 5.2:+3192994 | MS.gene21650:CDS |
| AATTGGGGTAAGATCGGCGT+TGG | 0.590002 | 5.2:+3190200 | MS.gene21650:CDS |
| AGTCCCTGGTGTGTATTGGC+TGG | 0.591751 | 5.2:+3195993 | MS.gene21650:CDS |
| TGAGTAATTCGCAGATCCAA+AGG | 0.594338 | 5.2:-3195940 | None:intergenic |
| CCTCGATGAACATCACCTGC+GGG | 0.594373 | 5.2:-3190017 | None:intergenic |
| ATACAGTGAACATGAAAAGA+GGG | 0.594379 | 5.2:+3194742 | MS.gene21650:CDS |
| ACGGTGTAACATTGAGAGAA+TGG | 0.595622 | 5.2:+3190393 | MS.gene21650:CDS |
| TTCATTAGTATGTCCAGACA+GGG | 0.595786 | 5.2:-3196153 | None:intergenic |
| ATATTGGGTTGATTAGTAGT+GGG | 0.599244 | 5.2:+3189856 | MS.gene21650:CDS |
| TTTCAAGTGTGTGCTGGAGA+GGG | 0.601436 | 5.2:+3197308 | MS.gene21650:CDS |
| GCAGGGTGATGCCTCCAAGT+TGG | 0.602461 | 5.2:+3192939 | MS.gene21650:CDS |
| CAGATATAGAAGAGGCAGAG+AGG | 0.604924 | 5.2:+3192986 | MS.gene21650:CDS |
| ATTACAGGAGTTGTGTAATG+AGG | 0.606394 | 5.2:+3192837 | MS.gene21650:CDS |
| GGCGGCTGCGGAAAGTAAGG+AGG | 0.607941 | 5.2:+3189986 | MS.gene21650:CDS |
| GCTAGAAAATCGCATAGTGA+TGG | 0.608608 | 5.2:+3189939 | MS.gene21650:CDS |
| CTTGGAATCAGATATAGAAG+AGG | 0.610271 | 5.2:+3192978 | MS.gene21650:CDS |
| ATGCTCTCTAAGCTTTGACC+GGG | 0.612774 | 5.2:+3193428 | MS.gene21650:CDS |
| AAGCAAAGTAATCTTCATCC+CGG | 0.620471 | 5.2:-3193446 | None:intergenic |
| ACTTTGCAATCTTGGAACCA+CGG | 0.621269 | 5.2:-3190319 | None:intergenic |
| AGACTACGACGGTGTAGTGA+AGG | 0.621641 | 5.2:+3193623 | MS.gene21650:CDS |
| GAGATTGGGGACACTGTGGG+CGG | 0.622277 | 5.2:-3193114 | None:intergenic |
| CCAGCGCAAATCAGGCAAAG+TGG | 0.623535 | 5.2:+3190427 | MS.gene21650:CDS |
| TTGTGTGAAGTAATTGGCAT+GGG | 0.625244 | 5.2:-3197226 | None:intergenic |
| TCCAAAGGCAAGCAAATGAG+AGG | 0.625566 | 5.2:-3195925 | None:intergenic |
| GCGGAAAGTAAGGAGGGTGT+AGG | 0.626048 | 5.2:+3189993 | MS.gene21650:CDS |
| GTCTACACACCTCGAAAAGG+AGG | 0.626294 | 5.2:-3190952 | None:intergenic |
| GTGGATGACTCACACTCTCG+GGG | 0.627042 | 5.2:+3190485 | MS.gene21650:CDS |
| ATGGCCAGCCAATACACACC+AGG | 0.627800 | 5.2:-3195997 | None:intergenic |
| AGCGACGTCTAGTGCTTGGG+AGG | 0.629292 | 5.2:+3189884 | MS.gene21650:CDS |
| AAAATTTGACGAGAGTGCGA+GGG | 0.629892 | 5.2:+3190661 | MS.gene21650:CDS |
| TAGAGAGCAAAATCAGACAA+AGG | 0.631176 | 5.2:+3190157 | MS.gene21650:CDS |
| CACTTGAAACAAACTGACCA+TGG | 0.631982 | 5.2:-3197294 | None:intergenic |
| AGCTAATAACTCCGGAAACG+AGG | 0.632584 | 5.2:-3189919 | None:intergenic |
| TCCTCGATGAACATCACCTG+CGG | 0.634907 | 5.2:-3190018 | None:intergenic |
| CCAAGCACTAGACGTCGCTG+CGG | 0.646502 | 5.2:-3189880 | None:intergenic |
| CTTGTGTGAAGTAATTGGCA+TGG | 0.647108 | 5.2:-3197227 | None:intergenic |
| ATATAGAAGAGGCAGAGAGG+AGG | 0.647655 | 5.2:+3192989 | MS.gene21650:CDS |
| ATTGGAGATTGGGGACACTG+TGG | 0.648633 | 5.2:-3193118 | None:intergenic |
| TCATCGAAAGAGAAGAAGCA+GGG | 0.652709 | 5.2:+3192922 | MS.gene21650:CDS |
| CATAGCTTACAGCTTTACGA+TGG | 0.656922 | 5.2:-3196016 | None:intergenic |
| GCGGCTGCGGAAAGTAAGGA+GGG | 0.659078 | 5.2:+3189987 | MS.gene21650:CDS |
| TAAATTGCTACCATCAAACC+AGG | 0.660402 | 5.2:+3190541 | MS.gene21650:CDS |
| CTTGGACCCCATATCAACAG+AGG | 0.661094 | 5.2:-3190633 | None:intergenic |
| TACAGCAAGCTTGAAGTGCG+GGG | 0.661460 | 5.2:+3193363 | MS.gene21650:CDS |
| CTGCCAGCCAGAGGAAACCA+AGG | 0.661718 | 5.2:-3193028 | None:intergenic |
| TGCCCTACAAAATTTGCCAG+TGG | 0.662507 | 5.2:+3194791 | MS.gene21650:CDS |
| CATCATCACGTCCAACAACA+GGG | 0.666527 | 5.2:+3191658 | MS.gene21650:CDS |
| AGTGGATGAACCAACCGAAG+AGG | 0.670752 | 5.2:-3196114 | None:intergenic |
| TACACCGTCGTAGTCTGTAG+AGG | 0.672028 | 5.2:-3193616 | None:intergenic |
| GTAACCCCATGTACATGACC+TGG | 0.680105 | 5.2:-3190559 | None:intergenic |
| CAAACCAGGTCATGTACATG+GGG | 0.680738 | 5.2:+3190555 | MS.gene21650:CDS |
| TGATGGTAAACATGTAGCTG+AGG | 0.684076 | 5.2:+3189650 | MS.gene21650:CDS |
| GTTACAGCAAGCTTGAAGTG+CGG | 0.685905 | 5.2:+3193361 | MS.gene21650:CDS |
| GCTGATGGATATATTGCATG+CGG | 0.691894 | 5.2:+3196833 | MS.gene21650:CDS |
| GTAATTGTTCTGCCAGCCAG+AGG | 0.692765 | 5.2:-3193037 | None:intergenic |
| GGTGATGCGAATCAGAATTG+GGG | 0.694044 | 5.2:+3190185 | MS.gene21650:CDS |
| ATGATTGTACTGTCAAGCTG+TGG | 0.694220 | 5.2:+3194819 | MS.gene21650:CDS |
| CAAAATCAGACAAAGGCAGG+CGG | 0.694575 | 5.2:+3190164 | MS.gene21650:CDS |
| TAATAACTCCGGAAACGAGG+TGG | 0.696527 | 5.2:-3189916 | None:intergenic |
| TGTTCTGATAGGAAAGCTGG+AGG | 0.696572 | 5.2:-3191591 | None:intergenic |
| TGACCTGAATTAGATACACG+AGG | 0.698186 | 5.2:-3190824 | None:intergenic |
| GACCTGAATTAGATACACGA+GGG | 0.702403 | 5.2:-3190823 | None:intergenic |
| TGGTATGCGAGTCCTGAGGG+AGG | 0.704127 | 5.2:+3190893 | MS.gene21650:CDS |
| TAAGTGGTATGCGAGTCCTG+AGG | 0.705242 | 5.2:+3190889 | MS.gene21650:CDS |
| TGGCCAGCCAATACACACCA+GGG | 0.709578 | 5.2:-3195996 | None:intergenic |
| TCTAGCACGACTGAATGTGA+CGG | 0.713007 | 5.2:+3190374 | MS.gene21650:CDS |
| CCCGCAGGTGATGTTCATCG+AGG | 0.729473 | 5.2:+3190017 | MS.gene21650:CDS |
| CCTCGAAAAGGAGGACACCG+AGG | 0.731822 | 5.2:-3190943 | None:intergenic |
| TCTAATGTATCAGTGAACCG+TGG | 0.736096 | 5.2:+3190302 | MS.gene21650:CDS |
| CTTGCCTCTACAGACTACGA+CGG | 0.736845 | 5.2:+3193612 | MS.gene21650:CDS |
| CAAGCTGTGGAGCATCAGTG+AGG | 0.737737 | 5.2:+3194832 | MS.gene21650:CDS |
| AAAGAGACTGATGATGACCA+TGG | 0.778100 | 5.2:+3197277 | MS.gene21650:CDS |
| ATGCGGTTCAGAATCAAACG+AGG | 0.781275 | 5.2:+3196850 | MS.gene21650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 3189558 | 3197393 | 3189558 | ID=MS.gene21650 |
| chr5.2 | mRNA | 3189558 | 3197393 | 3189558 | ID=MS.gene21650.t1;Parent=MS.gene21650 |
| chr5.2 | exon | 3189558 | 3190964 | 3189558 | ID=MS.gene21650.t1.exon1;Parent=MS.gene21650.t1 |
| chr5.2 | CDS | 3189558 | 3190964 | 3189558 | ID=cds.MS.gene21650.t1;Parent=MS.gene21650.t1 |
| chr5.2 | exon | 3191522 | 3191679 | 3191522 | ID=MS.gene21650.t1.exon2;Parent=MS.gene21650.t1 |
| chr5.2 | CDS | 3191522 | 3191679 | 3191522 | ID=cds.MS.gene21650.t1;Parent=MS.gene21650.t1 |
| chr5.2 | exon | 3192807 | 3193644 | 3192807 | ID=MS.gene21650.t1.exon3;Parent=MS.gene21650.t1 |
| chr5.2 | CDS | 3192807 | 3193644 | 3192807 | ID=cds.MS.gene21650.t1;Parent=MS.gene21650.t1 |
| chr5.2 | exon | 3194707 | 3194853 | 3194707 | ID=MS.gene21650.t1.exon4;Parent=MS.gene21650.t1 |
| chr5.2 | CDS | 3194707 | 3194853 | 3194707 | ID=cds.MS.gene21650.t1;Parent=MS.gene21650.t1 |
| chr5.2 | exon | 3195861 | 3196178 | 3195861 | ID=MS.gene21650.t1.exon5;Parent=MS.gene21650.t1 |
| chr5.2 | CDS | 3195861 | 3196178 | 3195861 | ID=cds.MS.gene21650.t1;Parent=MS.gene21650.t1 |
| chr5.2 | exon | 3196812 | 3196871 | 3196812 | ID=MS.gene21650.t1.exon6;Parent=MS.gene21650.t1 |
| chr5.2 | CDS | 3196812 | 3196871 | 3196812 | ID=cds.MS.gene21650.t1;Parent=MS.gene21650.t1 |
| chr5.2 | exon | 3197202 | 3197393 | 3197202 | ID=MS.gene21650.t1.exon7;Parent=MS.gene21650.t1 |
| chr5.2 | CDS | 3197202 | 3197393 | 3197202 | ID=cds.MS.gene21650.t1;Parent=MS.gene21650.t1 |
| Gene Sequence |
| Protein sequence |