Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22042.t1 | XP_003602984.1 | 95.4 | 391 | 18 | 0 | 1 | 391 | 1 | 391 | 2.00E-210 | 741.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22042.t1 | Q9S7T8 | 50.6 | 389 | 184 | 4 | 5 | 387 | 4 | 390 | 2.6e-105 | 383.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22042.t1 | G7J5R9 | 95.4 | 391 | 18 | 0 | 1 | 391 | 1 | 391 | 1.4e-210 | 741.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene045585 | MS.gene22042 | PPI |
| MS.gene031697 | MS.gene22042 | PPI |
| MS.gene065945 | MS.gene22042 | PPI |
| MS.gene065944 | MS.gene22042 | PPI |
| MS.gene006610 | MS.gene22042 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22042.t1 | MTR_3g101130 | 95.396 | 391 | 18 | 0 | 1 | 391 | 1 | 391 | 0.0 | 760 |
| MS.gene22042.t1 | MTR_3g101180 | 65.664 | 399 | 126 | 4 | 1 | 388 | 1 | 399 | 1.42e-179 | 505 |
| MS.gene22042.t1 | MTR_7g050750 | 64.615 | 390 | 133 | 2 | 5 | 389 | 7 | 396 | 4.36e-175 | 493 |
| MS.gene22042.t1 | MTR_8g461160 | 64.031 | 392 | 136 | 2 | 1 | 387 | 1 | 392 | 2.78e-174 | 491 |
| MS.gene22042.t1 | MTR_3g101010 | 64.267 | 389 | 132 | 3 | 5 | 389 | 4 | 389 | 1.59e-168 | 476 |
| MS.gene22042.t1 | MTR_7g050810 | 63.333 | 390 | 136 | 3 | 6 | 389 | 16 | 404 | 2.82e-168 | 476 |
| MS.gene22042.t1 | MTR_3g101200 | 64.359 | 390 | 113 | 4 | 1 | 388 | 26 | 391 | 7.41e-168 | 475 |
| MS.gene22042.t1 | MTR_3g018740 | 62.850 | 393 | 133 | 5 | 1 | 387 | 1 | 386 | 5.81e-166 | 470 |
| MS.gene22042.t1 | MTR_7g451890 | 61.440 | 389 | 145 | 2 | 6 | 389 | 14 | 402 | 3.94e-164 | 466 |
| MS.gene22042.t1 | MTR_7g047780 | 60.925 | 389 | 147 | 2 | 6 | 389 | 14 | 402 | 1.33e-162 | 462 |
| MS.gene22042.t1 | MTR_4g045707 | 60.660 | 394 | 144 | 4 | 1 | 389 | 1 | 388 | 1.14e-161 | 459 |
| MS.gene22042.t1 | MTR_8g027395 | 60.814 | 393 | 143 | 3 | 1 | 389 | 12 | 397 | 2.35e-160 | 456 |
| MS.gene22042.t1 | MTR_4g088525 | 63.361 | 363 | 124 | 3 | 30 | 388 | 11 | 368 | 9.14e-156 | 443 |
| MS.gene22042.t1 | MTR_3g101030 | 58.779 | 393 | 143 | 3 | 15 | 389 | 38 | 429 | 1.12e-155 | 446 |
| MS.gene22042.t1 | MTR_8g027420 | 59.033 | 393 | 139 | 4 | 1 | 389 | 1 | 375 | 3.03e-153 | 437 |
| MS.gene22042.t1 | MTR_2g046030 | 57.908 | 392 | 147 | 7 | 5 | 387 | 4 | 386 | 3.40e-148 | 425 |
| MS.gene22042.t1 | MTR_2g045980 | 57.398 | 392 | 149 | 6 | 5 | 387 | 4 | 386 | 2.08e-147 | 423 |
| MS.gene22042.t1 | MTR_3g048000 | 57.841 | 389 | 132 | 6 | 7 | 388 | 28 | 391 | 7.36e-147 | 422 |
| MS.gene22042.t1 | MTR_4g088535 | 56.234 | 393 | 144 | 6 | 1 | 388 | 1 | 370 | 1.84e-139 | 402 |
| MS.gene22042.t1 | MTR_3g101050 | 56.331 | 387 | 144 | 7 | 7 | 387 | 29 | 396 | 1.09e-136 | 396 |
| MS.gene22042.t1 | MTR_3g015620 | 56.041 | 389 | 138 | 6 | 6 | 387 | 16 | 378 | 3.60e-132 | 384 |
| MS.gene22042.t1 | MTR_3g102920 | 54.430 | 395 | 135 | 6 | 1 | 388 | 53 | 409 | 4.79e-130 | 380 |
| MS.gene22042.t1 | MTR_3g101190 | 52.893 | 363 | 103 | 4 | 31 | 389 | 14 | 312 | 1.12e-117 | 345 |
| MS.gene22042.t1 | MTR_3g100995 | 64.961 | 254 | 83 | 3 | 139 | 389 | 14 | 264 | 2.49e-114 | 334 |
| MS.gene22042.t1 | MTR_7g050830 | 54.777 | 314 | 111 | 2 | 6 | 299 | 16 | 318 | 2.37e-108 | 321 |
| MS.gene22042.t1 | MTR_3g015760 | 63.077 | 260 | 89 | 4 | 132 | 387 | 23 | 279 | 3.37e-99 | 296 |
| MS.gene22042.t1 | MTR_3g100010 | 49.367 | 316 | 112 | 3 | 31 | 313 | 40 | 340 | 2.49e-98 | 296 |
| MS.gene22042.t1 | MTR_3g018747 | 58.238 | 261 | 88 | 3 | 132 | 387 | 9 | 253 | 6.93e-97 | 290 |
| MS.gene22042.t1 | MTR_3g114310 | 41.995 | 381 | 196 | 10 | 28 | 389 | 36 | 410 | 7.28e-83 | 259 |
| MS.gene22042.t1 | MTR_3g111160 | 62.326 | 215 | 73 | 2 | 180 | 389 | 9 | 220 | 1.21e-82 | 252 |
| MS.gene22042.t1 | MTR_3g100520 | 57.399 | 223 | 75 | 3 | 173 | 389 | 1 | 209 | 2.85e-82 | 250 |
| MS.gene22042.t1 | MTR_3g101110 | 54.852 | 237 | 72 | 4 | 135 | 363 | 71 | 280 | 5.88e-76 | 237 |
| MS.gene22042.t1 | MTR_2g046410 | 59.615 | 208 | 71 | 4 | 189 | 387 | 144 | 347 | 7.77e-75 | 236 |
| MS.gene22042.t1 | MTR_3g099970 | 60.000 | 195 | 59 | 2 | 132 | 323 | 20 | 198 | 1.21e-74 | 231 |
| MS.gene22042.t1 | MTR_3g101150 | 65.000 | 160 | 45 | 3 | 238 | 388 | 1 | 158 | 1.25e-62 | 198 |
| MS.gene22042.t1 | MTR_3g101020 | 57.838 | 185 | 52 | 3 | 206 | 389 | 1 | 160 | 1.67e-62 | 198 |
| MS.gene22042.t1 | MTR_3g102870 | 57.792 | 154 | 61 | 1 | 198 | 347 | 4 | 157 | 9.76e-53 | 173 |
| MS.gene22042.t1 | MTR_3g111150 | 48.603 | 179 | 66 | 3 | 8 | 186 | 1 | 153 | 4.28e-48 | 161 |
| MS.gene22042.t1 | MTR_3g100990 | 62.791 | 129 | 46 | 1 | 4 | 132 | 3 | 129 | 2.79e-42 | 155 |
| MS.gene22042.t1 | MTR_3g101140 | 51.261 | 119 | 47 | 2 | 271 | 389 | 9 | 116 | 1.64e-28 | 108 |
| MS.gene22042.t1 | MTR_4g093550 | 51.648 | 91 | 42 | 1 | 1 | 91 | 1 | 89 | 6.00e-20 | 84.3 |
| MS.gene22042.t1 | MTR_6g046890 | 62.121 | 66 | 25 | 0 | 23 | 88 | 14 | 79 | 1.62e-17 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22042.t1 | AT1G47710 | 50.643 | 389 | 184 | 4 | 5 | 387 | 4 | 390 | 1.03e-133 | 388 |
| MS.gene22042.t1 | AT1G47710 | 50.643 | 389 | 184 | 4 | 5 | 387 | 31 | 417 | 6.86e-133 | 387 |
| MS.gene22042.t1 | AT3G45220 | 44.162 | 394 | 199 | 5 | 6 | 386 | 5 | 390 | 3.32e-112 | 333 |
| MS.gene22042.t1 | AT2G25240 | 44.987 | 389 | 195 | 8 | 6 | 386 | 5 | 382 | 5.38e-109 | 325 |
| MS.gene22042.t1 | AT2G26390 | 42.347 | 392 | 205 | 6 | 6 | 386 | 5 | 386 | 1.59e-101 | 306 |
| MS.gene22042.t1 | AT1G62170 | 43.989 | 366 | 175 | 6 | 29 | 386 | 88 | 431 | 2.48e-97 | 297 |
| MS.gene22042.t1 | AT1G64030 | 43.264 | 386 | 197 | 6 | 5 | 386 | 4 | 371 | 7.96e-97 | 294 |
| MS.gene22042.t1 | AT2G14540 | 44.875 | 361 | 178 | 4 | 29 | 386 | 55 | 397 | 4.48e-94 | 288 |
| MS.gene22042.t1 | AT1G62170 | 40.351 | 399 | 175 | 7 | 29 | 386 | 88 | 464 | 2.49e-90 | 280 |
| MS.gene22042.t1 | AT2G35580 | 39.846 | 389 | 206 | 9 | 5 | 386 | 4 | 371 | 2.17e-86 | 267 |
| MS.gene22042.t1 | AT1G64010 | 47.685 | 216 | 90 | 5 | 173 | 386 | 1 | 195 | 1.10e-62 | 200 |
| MS.gene22042.t1 | AT1G64010 | 47.264 | 201 | 83 | 5 | 188 | 386 | 2 | 181 | 1.19e-55 | 181 |
| MS.gene22042.t1 | AT1G62160 | 41.709 | 199 | 87 | 5 | 195 | 386 | 42 | 218 | 1.11e-34 | 128 |
| MS.gene22042.t1 | AT1G63280 | 50.847 | 118 | 54 | 2 | 129 | 244 | 5 | 120 | 4.16e-33 | 120 |
| MS.gene22042.t1 | AT1G51330 | 44.643 | 112 | 59 | 2 | 130 | 238 | 29 | 140 | 1.91e-25 | 102 |
Find 76 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAATGCACTATACTTTAA+AGG | 0.155210 | 3.3:+40227313 | MS.gene22042:CDS |
| CCACGTTTCAAAATTTATTC+TGG | 0.250552 | 3.3:+40227643 | MS.gene22042:CDS |
| ATATCGTTGCCTTTCTTATA+AGG | 0.269460 | 3.3:-40227481 | None:intergenic |
| TTCATTGAAGTAAATGAAAA+AGG | 0.281273 | 3.3:+40227781 | MS.gene22042:CDS |
| AAATGGCAAACTCTCCGATT+TGG | 0.285690 | 3.3:+40227734 | MS.gene22042:CDS |
| GGAAAAGAGGTGAGAGGATA+AGG | 0.329026 | 3.3:-40226937 | None:intergenic |
| AATGGCAAACTCTCCGATTT+GGG | 0.350203 | 3.3:+40227735 | MS.gene22042:CDS |
| AAGTGATAGTGGGTGACTTC+AGG | 0.357075 | 3.3:+40227617 | MS.gene22042:CDS |
| GGTCAGCTACAAAATCTATT+GGG | 0.367281 | 3.3:-40227870 | None:intergenic |
| CTACTATGCTTAGCACAGTT+TGG | 0.367964 | 3.3:-40226839 | None:intergenic |
| AGTATCAACAATTTCTTTGA+AGG | 0.389170 | 3.3:-40227051 | None:intergenic |
| TCTAATGTGTCAAAGGAGTT+AGG | 0.389227 | 3.3:+40227676 | MS.gene22042:CDS |
| CGTCAGCTTCTCTCCTTCCT+TGG | 0.391854 | 3.3:+40226888 | MS.gene22042:CDS |
| ATTAGTGATGTTCTTTCACC+TGG | 0.400115 | 3.3:+40227259 | MS.gene22042:CDS |
| TGGTCAGCTACAAAATCTAT+TGG | 0.402096 | 3.3:-40227871 | None:intergenic |
| TCTGGTACAATACTCTTTGT+TGG | 0.408824 | 3.3:+40227925 | MS.gene22042:CDS |
| CTTCGTCTTCCTTATAAGAA+AGG | 0.420477 | 3.3:+40227472 | MS.gene22042:CDS |
| GTTAGCTTTGATTGAGAAAG+TGG | 0.425057 | 3.3:+40227552 | MS.gene22042:CDS |
| CTGATAAGAGACGATTTGTC+TGG | 0.447026 | 3.3:+40227907 | MS.gene22042:CDS |
| TCCACGTAAGGAAGTGATAG+TGG | 0.448188 | 3.3:+40227606 | MS.gene22042:CDS |
| CAACAAGAGGATTGAGCACT+TGG | 0.450565 | 3.3:-40227948 | None:intergenic |
| AGTTTGTGTTTCAAAATCTC+AGG | 0.451018 | 3.3:-40227583 | None:intergenic |
| CAAGTGCTCAATCCTCTTGT+TGG | 0.453144 | 3.3:+40227949 | MS.gene22042:CDS |
| TTGTGTCGGACCCTCGGAAC+CGG | 0.453396 | 3.3:-40226865 | None:intergenic |
| GTCACTAGAACCGGACTATC+GGG | 0.467305 | 3.3:+40227820 | MS.gene22042:CDS |
| GCTGCTGCAGTCACTAGAAC+CGG | 0.471427 | 3.3:+40227811 | MS.gene22042:CDS |
| CAACAATTTCTTTGAAGGAA+GGG | 0.472215 | 3.3:-40227046 | None:intergenic |
| TTAAATTAGCGATTGATTCG+CGG | 0.473914 | 3.3:-40226731 | None:intergenic |
| AACAATCCATCTCTTGCATC+GGG | 0.475826 | 3.3:-40227532 | None:intergenic |
| GTCAAACCTCCATCAGAGAA+AGG | 0.475976 | 3.3:-40227709 | None:intergenic |
| GTGTTTCAAAATCTCAGGTT+TGG | 0.477894 | 3.3:-40227578 | None:intergenic |
| TCAACAATTTCTTTGAAGGA+AGG | 0.480156 | 3.3:-40227047 | None:intergenic |
| TCTCGGTGGCAGCTCAATCA+AGG | 0.492253 | 3.3:+40227390 | MS.gene22042:CDS |
| TGAAGGAAGGGTAAACAGAA+AGG | 0.497719 | 3.3:-40227034 | None:intergenic |
| GAAGGAAGGGTAAACAGAAA+GGG | 0.500206 | 3.3:-40227033 | None:intergenic |
| GAGAGGATAAGGAGTTGAGA+TGG | 0.502008 | 3.3:-40226926 | None:intergenic |
| AGACAACTGTGGACCACCAT+AGG | 0.503886 | 3.3:-40226982 | None:intergenic |
| TAAGGAGTTGAGATGGTCAA+TGG | 0.510048 | 3.3:-40226919 | None:intergenic |
| TGAACTTTCTAATGTGTCAA+AGG | 0.513651 | 3.3:+40227669 | MS.gene22042:CDS |
| ACGAGCACATCCCGATAGTC+CGG | 0.528493 | 3.3:-40227830 | None:intergenic |
| AGTCACTAGAACCGGACTAT+CGG | 0.529335 | 3.3:+40227819 | MS.gene22042:CDS |
| TAACAATCCATCTCTTGCAT+CGG | 0.531098 | 3.3:-40227533 | None:intergenic |
| TTTCTTCCCGATGCAAGAGA+TGG | 0.534096 | 3.3:+40227526 | MS.gene22042:CDS |
| GAAACACAAACTTCCACGTA+AGG | 0.535930 | 3.3:+40227594 | MS.gene22042:CDS |
| CTAGACGACGCTGCTCCCTA+TGG | 0.544397 | 3.3:+40226966 | MS.gene22042:CDS |
| AATATGTTCGAAACCCAAAT+CGG | 0.546103 | 3.3:-40227748 | None:intergenic |
| CATAGTAGCTGCCGGTTCCG+AGG | 0.550280 | 3.3:+40226854 | MS.gene22042:CDS |
| CTGACGTTGTGTCGGACCCT+CGG | 0.555565 | 3.3:-40226871 | None:intergenic |
| CGTCTAGCACAGAGGAAAAG+AGG | 0.559719 | 3.3:-40226950 | None:intergenic |
| TCTCTTATCAGAAACATGAA+AGG | 0.561884 | 3.3:-40227895 | None:intergenic |
| ATAGTAGCTGCCGGTTCCGA+GGG | 0.565910 | 3.3:+40226855 | MS.gene22042:CDS |
| CCCACTATCACTTCCTTACG+TGG | 0.567927 | 3.3:-40227607 | None:intergenic |
| CTCTTATCAGAAACATGAAA+GGG | 0.569385 | 3.3:-40227894 | None:intergenic |
| CACTATACTTTAAAGGAGCA+TGG | 0.570932 | 3.3:+40227320 | MS.gene22042:CDS |
| ATTGGGGTCGGAATTGAAGT+AGG | 0.576372 | 3.3:-40227853 | None:intergenic |
| GTGCTAAGCATAGTAGCTGC+CGG | 0.576729 | 3.3:+40226846 | MS.gene22042:CDS |
| GCTACAAAATCTATTGGGGT+CGG | 0.598942 | 3.3:-40227865 | None:intergenic |
| TGATTGAGCTGCCACCGAGA+AGG | 0.604903 | 3.3:-40227387 | None:intergenic |
| GACAACTGTGGACCACCATA+GGG | 0.607442 | 3.3:-40226981 | None:intergenic |
| CTTTCTTATAAGGAAGACGA+AGG | 0.614295 | 3.3:-40227471 | None:intergenic |
| GAGAGAAGCTGACGTTGTGT+CGG | 0.614776 | 3.3:-40226879 | None:intergenic |
| AGCACAGTTTGGAGTGACAA+CGG | 0.616387 | 3.3:-40226828 | None:intergenic |
| ATCACTTGATTTCATAAACA+AGG | 0.616736 | 3.3:+40227094 | MS.gene22042:CDS |
| GTTAAGCTATTAATTGACCC+AGG | 0.618787 | 3.3:-40227277 | None:intergenic |
| AGCAGCGTCGTCTAGCACAG+AGG | 0.630122 | 3.3:-40226958 | None:intergenic |
| CACAGAGGAAAAGAGGTGAG+AGG | 0.632829 | 3.3:-40226943 | None:intergenic |
| CCACGTAAGGAAGTGATAGT+GGG | 0.633032 | 3.3:+40227607 | MS.gene22042:CDS |
| TTAGTGATGTTCTTTCACCT+GGG | 0.638192 | 3.3:+40227260 | MS.gene22042:CDS |
| GAAATCAAGTGATCTGAGAG+TGG | 0.639757 | 3.3:-40227084 | None:intergenic |
| GACGACGCTGCTCCCTATGG+TGG | 0.640142 | 3.3:+40226969 | MS.gene22042:CDS |
| CACCGAGAAGGTGAAAATCA+CGG | 0.643065 | 3.3:-40227375 | None:intergenic |
| TTATCAGAAACATGAAAGGG+TGG | 0.645384 | 3.3:-40227891 | None:intergenic |
| GTCAGCTACAAAATCTATTG+GGG | 0.645625 | 3.3:-40227869 | None:intergenic |
| AATTATGATCTACCAACAAG+AGG | 0.656976 | 3.3:-40227961 | None:intergenic |
| AATTAGCGATTGATTCGCGG+TGG | 0.680650 | 3.3:-40226728 | None:intergenic |
| GAGTTGACAAAAGACAACTG+TGG | 0.761019 | 3.3:-40226993 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAAGGAAAATATATAT+AGG | - | chr3.3:40227122-40227141 | None:intergenic | 15.0% |
| !! | TTCATTGAAGTAAATGAAAA+AGG | + | chr3.3:40227781-40227800 | MS.gene22042:CDS | 20.0% |
| !!! | TTTACTGTTCTAAAAAAAGA+AGG | - | chr3.3:40227136-40227155 | None:intergenic | 20.0% |
| ! | AGTATCAACAATTTCTTTGA+AGG | - | chr3.3:40227054-40227073 | None:intergenic | 25.0% |
| ! | ATCACTTGATTTCATAAACA+AGG | + | chr3.3:40227094-40227113 | MS.gene22042:CDS | 25.0% |
| !! | CAGTTTATAAATGCTTTTGA+TGG | + | chr3.3:40227439-40227458 | MS.gene22042:CDS | 25.0% |
| !!! | TGTTTTTGATAGCAAATGTT+TGG | - | chr3.3:40226778-40226797 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTGAAGCATCAAA+TGG | - | chr3.3:40227352-40227371 | None:intergenic | 25.0% |
| AATATGTTCGAAACCCAAAT+CGG | - | chr3.3:40227751-40227770 | None:intergenic | 30.0% | |
| AGTTTGTGTTTCAAAATCTC+AGG | - | chr3.3:40227586-40227605 | None:intergenic | 30.0% | |
| ATATCGTTGCCTTTCTTATA+AGG | - | chr3.3:40227484-40227503 | None:intergenic | 30.0% | |
| CCACGTTTCAAAATTTATTC+TGG | + | chr3.3:40227643-40227662 | MS.gene22042:CDS | 30.0% | |
| CGTCAAAAAAGTGAATGTAT+GGG | + | chr3.3:40227213-40227232 | MS.gene22042:CDS | 30.0% | |
| CTCTTATCAGAAACATGAAA+GGG | - | chr3.3:40227897-40227916 | None:intergenic | 30.0% | |
| GCTAATGCACTATACTTTAA+AGG | + | chr3.3:40227313-40227332 | MS.gene22042:CDS | 30.0% | |
| TATATTTGATGCTGTCGTAA+AGG | + | chr3.3:40227180-40227199 | MS.gene22042:intron | 30.0% | |
| TCTCTTATCAGAAACATGAA+AGG | - | chr3.3:40227898-40227917 | None:intergenic | 30.0% | |
| TGAACTTTCTAATGTGTCAA+AGG | + | chr3.3:40227669-40227688 | MS.gene22042:CDS | 30.0% | |
| ! | CAACAATTTCTTTGAAGGAA+GGG | - | chr3.3:40227049-40227068 | None:intergenic | 30.0% |
| ! | TCAACAATTTCTTTGAAGGA+AGG | - | chr3.3:40227050-40227069 | None:intergenic | 30.0% |
| ! | TTCTTTTTGCTAGTCATGAA+GGG | - | chr3.3:40227418-40227437 | None:intergenic | 30.0% |
| !! | TTAAATTAGCGATTGATTCG+CGG | - | chr3.3:40226734-40226753 | None:intergenic | 30.0% |
| !!! | CCAGAATAAATTTTGAAACG+TGG | - | chr3.3:40227646-40227665 | None:intergenic | 30.0% |
| !!! | CCATACATTCACTTTTTTGA+CGG | - | chr3.3:40227215-40227234 | None:intergenic | 30.0% |
| ATTAGTGATGTTCTTTCACC+TGG | + | chr3.3:40227259-40227278 | MS.gene22042:CDS | 35.0% | |
| CCGTCAAAAAAGTGAATGTA+TGG | + | chr3.3:40227212-40227231 | MS.gene22042:CDS | 35.0% | |
| CTTCGTCTTCCTTATAAGAA+AGG | + | chr3.3:40227472-40227491 | MS.gene22042:CDS | 35.0% | |
| CTTTCTTATAAGGAAGACGA+AGG | - | chr3.3:40227474-40227493 | None:intergenic | 35.0% | |
| GGTCAGCTACAAAATCTATT+GGG | - | chr3.3:40227873-40227892 | None:intergenic | 35.0% | |
| GTCAGCTACAAAATCTATTG+GGG | - | chr3.3:40227872-40227891 | None:intergenic | 35.0% | |
| GTGTTTCAAAATCTCAGGTT+TGG | - | chr3.3:40227581-40227600 | None:intergenic | 35.0% | |
| GTTAAGCTATTAATTGACCC+AGG | - | chr3.3:40227280-40227299 | None:intergenic | 35.0% | |
| TAACAATCCATCTCTTGCAT+CGG | - | chr3.3:40227536-40227555 | None:intergenic | 35.0% | |
| TCTAATGTGTCAAAGGAGTT+AGG | + | chr3.3:40227676-40227695 | MS.gene22042:CDS | 35.0% | |
| TCTGGTACAATACTCTTTGT+TGG | + | chr3.3:40227925-40227944 | MS.gene22042:CDS | 35.0% | |
| TGATGGAGGTTTGACAAAAA+TGG | + | chr3.3:40227717-40227736 | MS.gene22042:CDS | 35.0% | |
| TGGGCTAAAAAAGAGACAAA+CGG | + | chr3.3:40227232-40227251 | MS.gene22042:CDS | 35.0% | |
| TGGTCAGCTACAAAATCTAT+TGG | - | chr3.3:40227874-40227893 | None:intergenic | 35.0% | |
| TTAGTGATGTTCTTTCACCT+GGG | + | chr3.3:40227260-40227279 | MS.gene22042:CDS | 35.0% | |
| TTATCAGAAACATGAAAGGG+TGG | - | chr3.3:40227894-40227913 | None:intergenic | 35.0% | |
| ! | CACTATACTTTAAAGGAGCA+TGG | + | chr3.3:40227320-40227339 | MS.gene22042:CDS | 35.0% |
| ! | CTTCTTTTTGCTAGTCATGA+AGG | - | chr3.3:40227419-40227438 | None:intergenic | 35.0% |
| ! | TGTCTTTTGTCAACTCTGTT+TGG | + | chr3.3:40227000-40227019 | MS.gene22042:CDS | 35.0% |
| !! | AATGGATTTTGATCCAAGGA+AGG | - | chr3.3:40226904-40226923 | None:intergenic | 35.0% |
| !! | GTTAGCTTTGATTGAGAAAG+TGG | + | chr3.3:40227552-40227571 | MS.gene22042:CDS | 35.0% |
| !! | GTTGTTTTACCTTTCTCTGA+TGG | + | chr3.3:40227700-40227719 | MS.gene22042:CDS | 35.0% |
| AAATGGCAAACTCTCCGATT+TGG | + | chr3.3:40227734-40227753 | MS.gene22042:CDS | 40.0% | |
| AACAATCCATCTCTTGCATC+GGG | - | chr3.3:40227535-40227554 | None:intergenic | 40.0% | |
| AATGGCAAACTCTCCGATTT+GGG | + | chr3.3:40227735-40227754 | MS.gene22042:CDS | 40.0% | |
| CTACTATGCTTAGCACAGTT+TGG | - | chr3.3:40226842-40226861 | None:intergenic | 40.0% | |
| CTGATAAGAGACGATTTGTC+TGG | + | chr3.3:40227907-40227926 | MS.gene22042:CDS | 40.0% | |
| GAAACACAAACTTCCACGTA+AGG | + | chr3.3:40227594-40227613 | MS.gene22042:CDS | 40.0% | |
| GAAATCAAGTGATCTGAGAG+TGG | - | chr3.3:40227087-40227106 | None:intergenic | 40.0% | |
| GAAGGAAGGGTAAACAGAAA+GGG | - | chr3.3:40227036-40227055 | None:intergenic | 40.0% | |
| GAGTTGACAAAAGACAACTG+TGG | - | chr3.3:40226996-40227015 | None:intergenic | 40.0% | |
| GCTACAAAATCTATTGGGGT+CGG | - | chr3.3:40227868-40227887 | None:intergenic | 40.0% | |
| TAAGGAGTTGAGATGGTCAA+TGG | - | chr3.3:40226922-40226941 | None:intergenic | 40.0% | |
| TGAAGGAAGGGTAAACAGAA+AGG | - | chr3.3:40227037-40227056 | None:intergenic | 40.0% | |
| ! | GTTTTACCTTTCTCTGATGG+AGG | + | chr3.3:40227703-40227722 | MS.gene22042:CDS | 40.0% |
| !! | GGTCAATGGATTTTGATCCA+AGG | - | chr3.3:40226908-40226927 | None:intergenic | 40.0% |
| AGTCACTAGAACCGGACTAT+CGG | + | chr3.3:40227819-40227838 | MS.gene22042:CDS | 45.0% | |
| ATTGGGGTCGGAATTGAAGT+AGG | - | chr3.3:40227856-40227875 | None:intergenic | 45.0% | |
| CAACAAGAGGATTGAGCACT+TGG | - | chr3.3:40227951-40227970 | None:intergenic | 45.0% | |
| CAAGTGCTCAATCCTCTTGT+TGG | + | chr3.3:40227949-40227968 | MS.gene22042:CDS | 45.0% | |
| CACCGAGAAGGTGAAAATCA+CGG | - | chr3.3:40227378-40227397 | None:intergenic | 45.0% | |
| CCACGTAAGGAAGTGATAGT+GGG | + | chr3.3:40227607-40227626 | MS.gene22042:CDS | 45.0% | |
| GAGAGGATAAGGAGTTGAGA+TGG | - | chr3.3:40226929-40226948 | None:intergenic | 45.0% | |
| GGAAAAGAGGTGAGAGGATA+AGG | - | chr3.3:40226940-40226959 | None:intergenic | 45.0% | |
| GTCAAACCTCCATCAGAGAA+AGG | - | chr3.3:40227712-40227731 | None:intergenic | 45.0% | |
| TCCACGTAAGGAAGTGATAG+TGG | + | chr3.3:40227606-40227625 | MS.gene22042:CDS | 45.0% | |
| TTTCTTCCCGATGCAAGAGA+TGG | + | chr3.3:40227526-40227545 | MS.gene22042:CDS | 45.0% | |
| ! | AGCACAGTTTGGAGTGACAA+CGG | - | chr3.3:40226831-40226850 | None:intergenic | 45.0% |
| ! | GACCGTGATTTTCACCTTCT+CGG | + | chr3.3:40227373-40227392 | MS.gene22042:CDS | 45.0% |
| !! | AAGTGATAGTGGGTGACTTC+AGG | + | chr3.3:40227617-40227636 | MS.gene22042:CDS | 45.0% |
| !! | AATTAGCGATTGATTCGCGG+TGG | - | chr3.3:40226731-40226750 | None:intergenic | 45.0% |
| AGACAACTGTGGACCACCAT+AGG | - | chr3.3:40226985-40227004 | None:intergenic | 50.0% | |
| CACAGAGGAAAAGAGGTGAG+AGG | - | chr3.3:40226946-40226965 | None:intergenic | 50.0% | |
| CCCACTATCACTTCCTTACG+TGG | - | chr3.3:40227610-40227629 | None:intergenic | 50.0% | |
| CGTCTAGCACAGAGGAAAAG+AGG | - | chr3.3:40226953-40226972 | None:intergenic | 50.0% | |
| GACAACTGTGGACCACCATA+GGG | - | chr3.3:40226984-40227003 | None:intergenic | 50.0% | |
| GAGAGAAGCTGACGTTGTGT+CGG | - | chr3.3:40226882-40226901 | None:intergenic | 50.0% | |
| GTCACTAGAACCGGACTATC+GGG | + | chr3.3:40227820-40227839 | MS.gene22042:CDS | 50.0% | |
| GTGCTAAGCATAGTAGCTGC+CGG | + | chr3.3:40226846-40226865 | MS.gene22042:CDS | 50.0% | |
| ! | CGTGATTTTCACCTTCTCGG+TGG | + | chr3.3:40227376-40227395 | MS.gene22042:CDS | 50.0% |
| ACGAGCACATCCCGATAGTC+CGG | - | chr3.3:40227833-40227852 | None:intergenic | 55.0% | |
| CGTCAGCTTCTCTCCTTCCT+TGG | + | chr3.3:40226888-40226907 | MS.gene22042:CDS | 55.0% | |
| GCTGCTGCAGTCACTAGAAC+CGG | + | chr3.3:40227811-40227830 | MS.gene22042:CDS | 55.0% | |
| TCTCGGTGGCAGCTCAATCA+AGG | + | chr3.3:40227390-40227409 | MS.gene22042:CDS | 55.0% | |
| TGATTGAGCTGCCACCGAGA+AGG | - | chr3.3:40227390-40227409 | None:intergenic | 55.0% | |
| !! | ATAGTAGCTGCCGGTTCCGA+GGG | + | chr3.3:40226855-40226874 | MS.gene22042:CDS | 55.0% |
| AGCAGCGTCGTCTAGCACAG+AGG | - | chr3.3:40226961-40226980 | None:intergenic | 60.0% | |
| CTAGACGACGCTGCTCCCTA+TGG | + | chr3.3:40226966-40226985 | MS.gene22042:CDS | 60.0% | |
| CTGACGTTGTGTCGGACCCT+CGG | - | chr3.3:40226874-40226893 | None:intergenic | 60.0% | |
| TTGTGTCGGACCCTCGGAAC+CGG | - | chr3.3:40226868-40226887 | None:intergenic | 60.0% | |
| !! | CATAGTAGCTGCCGGTTCCG+AGG | + | chr3.3:40226854-40226873 | MS.gene22042:CDS | 60.0% |
| GACGACGCTGCTCCCTATGG+TGG | + | chr3.3:40226969-40226988 | MS.gene22042:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 40226720 | 40227981 | 40226720 | ID=MS.gene22042 |
| chr3.3 | mRNA | 40226720 | 40227981 | 40226720 | ID=MS.gene22042.t1;Parent=MS.gene22042 |
| chr3.3 | exon | 40226720 | 40227115 | 40226720 | ID=MS.gene22042.t1.exon1;Parent=MS.gene22042.t1 |
| chr3.3 | CDS | 40226720 | 40227115 | 40226720 | ID=cds.MS.gene22042.t1;Parent=MS.gene22042.t1 |
| chr3.3 | exon | 40227202 | 40227981 | 40227202 | ID=MS.gene22042.t1.exon2;Parent=MS.gene22042.t1 |
| chr3.3 | CDS | 40227202 | 40227981 | 40227202 | ID=cds.MS.gene22042.t1;Parent=MS.gene22042.t1 |
| Gene Sequence |
| Protein sequence |
